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Department of Microbiology, Immunology, and Pathology 1

Department of Microbiology, Immunology, and Pathology 1

Department of , , and 1

The research programs in the department provide excellent opportunities DEPARTMENT OF for graduate training in fundamentals of modern investigative microbiology, immunology, and pathobiology. An emphasis is placed MICROBIOLOGY, on a multi-disciplinary approach to research problems. Areas of research strength in the department include bacteriology, immunology, IMMUNOLOGY, AND mycobacterial , , vector borne infectious diseases, and . Please visit the Department of Microbiology (https:// PATHOLOGY vetmedbiosci.colostate.edu/mip/) for more information. Master's Programs • Master of Science in Microbiology, Plan A* • Master of Science in Microbiology, Plan B (http:// catalog.colostate.edu/general-catalog/colleges/veterinary-- biomedical-sciences/microbiology-immunology-pathology/plan-b-ms- microbiology/) Ph.D. • Ph.D. in Microbiology* • Ph.D. in Pathology*

* Please see department for program of study.

Office in Pathology Building, Room 110 (970) 491-6144 Courses vetmedbiosci.colostate.edu/mip/ (https://vetmedbiosci.colostate.edu/ Microbiology, Immunology, and Pathology mip/) (MIP) Professor Gregg Dean, Department Head MIP 101 Introduction to Human (GT-SC2) Credits: 3 (3-0-0) Associate Professor Zaid Abdo, Associate Department Head for Graduate Course Description: Survey of human systems and diseases. Education Prerequisite: None. Associate Professor Jennifer McLean, Associate Department Head for Term Offered: Spring. Undergraduate Education Associate Grade Mode: Traditional. Professor Paul Avery, Associate Department Head for DVM and Clinical Special Course Fee: No. Service Additional Information: Biological & Physical Sciences 3A, Natural & Professor Jeff Wilusz, Associate Department Head for Research Physical Sciences w/o lab (GT-SC2). Associate Professor Kristy Pabilonia, Director of Clinical Diagnostics Associate Professor Brian Geiss, Director of the Microbiology– MIP 149 The Microbial World Credits: 3 (3-0-0) Immunology Master of Science (professional) Program Course Description: Importance of microbiology in daily life, with Associate Professor Candice Mathiason, Director of the Infectious emphasis on positive and negative roles of microbes, infectious disease, Disease Research & Response Network (IDRRN) and current microbiology issues. Associate Professor Amy MacNeill, Program Coordinator Prerequisite: None. Term Offered: Fall. Undergraduate Grade Mode: Traditional. Special Course Fee: No. Minor MIP 150 Introduction to Research Methods Credits: 3 (0-6-0) • Minor in Microbiology (http://catalog.colostate.edu/general-catalog/ Course Description: Undergraduate research experience highlighting colleges/veterinary-medicine-biomedical-sciences/microbiology- fundamental skills of laboratory research while working towards the goal immunology-pathology/microbiology-minor/) of novel microbial discovery. Prerequisite: None. Graduate Terms Offered: Fall, Spring. Grade Mode: Traditional. Graduate Programs in Microbiology, Special Course Fee: No. Immunology and Pathology MIP 192 Microbiology First-Year Seminar Credits: 2 (0-0-2) Course Description: Introduction to microbiology major and faculty; The department offers graduate programs leading to Master of academic and career planning; information sources in biomedical Science, Doctor of Philosophy, and combined Doctor of Veterinary sciences. Medicine/Doctor of Philosophy degrees. Students interested in Prerequisite: None. graduate work should refer to the Graduate and Professional Bulletin Term Offered: Fall. (http://catalog.colostate.edu/general-catalog/graduate-bulletin/) and Grade Mode: Traditional. the Department of Microbiology, Immunology and Pathology. (https:// Special Course Fee: No. vetmedbiosci.colostate.edu/mip/) 2 Department of Microbiology, Immunology, and Pathology

MIP 250 Eukaryotic Microbiology Credits: 3 (3-0-0) MIP 303 General Microbiology--Honors Recitation Credits: 2 (0-0-2) Course Description: biology topics with emphasis on eukaryotic Course Description: Research and present topics related to the material microbes. Topics include the central dogma of , presented in MIP 300. cell structure and , and cell membranes as they relate to the Prerequisite: None. importance of the host cell as well as parasites. Spotlight microbes Registration Information: Participation in the Honors Program required. will be studied that depict many eukaryotic processes important in cell Must have concurrent registration in MIP 300. Sections may be offered: biology, human health, and scientific models. Online. Prerequisite: CHEM 111, may be taken concurrently and LIFE 102. Terms Offered: Fall, Spring. Term Offered: Fall. Grade Mode: Traditional. Grade Mode: Traditional. Special Course Fee: No. Special Course Fee: No. MIP 315 Pathology of Human and Disease Credits: 3 (3-0-0) MIP 260 The World of Parasites Credits: 3 (3-0-0) Course Description: Biological systems critical to mammalian Course Description: Introduction to ; , , and how each is affected by metabolic, genetic, environmental, and , physiology, and morphology of representative parasites of infectious agents. every group. Prerequisite: BZ 110 or LIFE 102. Prerequisite: BZ 110 or LIFE 102. Terms Offered: Fall, Spring. Term Offered: Spring. Grade Mode: Traditional. Grade Mode: Traditional. Special Course Fee: No. Special Course Fee: No. MIP 334 Food Microbiology Credits: 3 (3-0-0) MIP 275 Microcomputing Applications in Microbiology Credits: 2 (1-0-1) Course Description: in the spoilage of foods. Methods of Course Description: Network software on MS-DOS microcomputers will control of microorganisms in food and the major food-borne diseases. be used to acquire and analyze data and information that are commonly Prerequisite: LIFE 205 or MIP 300. encountered in microbiology. Term Offered: Spring. Prerequisite: None. Grade Mode: Traditional. Registration Information: Must register for lecture and recitation. Special Course Fee: No. Term Offered: Spring. MIP 335 Food Microbiology Laboratory Credits: 2 (0-4-0) Grade Mode: Traditional. Course Description: Laboratory skills and techniques related to the Special Course Fee: No. presence of microorganisms in food, production, and preservation. MIP 298 Introductory Research Credits: Var[1-3] (0-0-0) Prerequisite: (LIFE 206 or MIP 302) and (MIP 334, may be taken Course Description: Freshman/sophomore research experience in a concurrently). working research environment. Term Offered: Spring (odd years). Prerequisite: None. Grade Mode: Traditional. Registration Information: Written consent of instructor required. Special Course Fee: No. Terms Offered: Fall, Spring, Summer. MIP 342 Immunology Credits: 4 (3-0-1) Grade Mode: Instructor Option. Course Description: Principles of immunology: components of the Special Course Fee: No. , interactions of humoral and cellular elements, and MIP 300 General Microbiology Credits: 3 (3-0-0) clinical applications of basic concepts. Course Description: Structure, function, development, physiology, and Prerequisite: (BZ 310 or BZ 350 or LIFE 201B or LIFE 210 or MIP 250) molecular biology of microorganisms emphasizing . and (CHEM 245, may be taken concurrently or CHEM 341, may be taken Prerequisite: (BZ 110 or BZ 120 or LIFE 102) and (CHEM 245, may concurrently or CHEM 345, may be taken concurrently) and (MIP 300). be taken concurrently or CHEM 341, may be taken concurrently or Registration Information: Must register for lecture and recitation. CHEM 345, may be taken concurrently). Terms Offered: Fall, Spring, Summer. Registration Information: Sections may be offered: Online. Grade Mode: Traditional. Terms Offered: Fall, Spring, Summer. Special Course Fee: No. Grade Mode: Traditional. MIP 343 Immunology Laboratory Credits: 2 (0-4-0) Special Course Fee: No. Course Description: Techniques used in research and clinical MIP 302 General Microbiology Laboratory Credits: 2 (0-4-0) immunology, including diagnostic problem solving and data analysis. Course Description: Laboratory skills and techniques for isolating, Prerequisite: MIP 302 and MIP 342, may be taken concurrently. characterizing, and identifying bacteria. Term Offered: Spring. Prerequisite: MIP 300, may be taken concurrently. Grade Mode: Traditional. Terms Offered: Fall, Spring, Summer. Special Course Fee: No. Grade Mode: Traditional. MIP 351 Medical Bacteriology Credits: 3 (3-0-0) Special Course Fee: No. Course Description: Bacteria which human and veterinary diseases; host-parasite relationships, disease mechanisms, prevention, and . Prerequisite: MIP 342. Term Offered: Spring. Grade Mode: Traditional. Special Course Fee: No. Department of Microbiology, Immunology, and Pathology 3

MIP 352 Medical Bacteriology Laboratory Credits: 3 (0-6-0) MIP 400F Capstone in Microbiology: Virology Credits: 2 (2-0-0) Course Description: Laboratory skills and techniques necessary for Course Description: identifying medically important bacteria. Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or Prerequisite: MIP 302 and MIP 351, may be taken concurrently. MIP 420, may be taken concurrently). Term Offered: Spring. Terms Offered: Fall, Spring. Grade Mode: Traditional. Grade Mode: Traditional. Special Course Fee: No. Special Course Fee: No. MIP 384 Supervised College Teaching Credits: Var[1-5] (0-0-0) MIP 400G Capstone in Microbiology: Service Learning Credits: 2 (2-0-0) Course Description: Course Description: Prerequisite: None. Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or Registration Information: Written consent of department required. MIP 420, may be taken concurrently). Maximum of 10 credits allowed in course. A maximum of 10 combined Registration Information: Written consent of department required. credits for all 384 and 484 courses are counted towards graduation Terms Offered: Fall, Spring. requirements. Grade Mode: Traditional. Terms Offered: Fall, Spring, Summer. Special Course Fee: No. Grade Mode: Instructor Option. MIP 400H Capstone in Microbiology: Prion Biology Credits: 2 (2-0-0) Special Course Fee: No. Course Description: Discussion of literature on a topic of importance to MIP 400A Capstone in Microbiology: Credits: the research in the discipline. 2 (2-0-0) Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or Course Description: MIP 420, may be taken concurrently). Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or Registration Information: Junior standing. Written consent of instructor. MIP 420, may be taken concurrently). Terms Offered: Fall, Spring. Registration Information: Written consent of department required. Grade Mode: Traditional. Terms Offered: Fall, Spring. Special Course Fee: No. Grade Mode: Traditional. MIP 400I Capstone in Microbiology: Mycobacterial Biology Credits: Special Course Fee: No. 2 (2-0-0) MIP 400B Capstone in Microbiology: Credits: 2 (0-0-2) Course Description: Discussion of literature on a topic of importance to Course Description: the research community in the discipline. Prerequisite: (BC 351 or BC 401) and (MIP 300). Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or Terms Offered: Fall, Spring. MIP 420, may be taken concurrently). Grade Mode: Traditional. Registration Information: Junior standing. Special Course Fee: No. Terms Offered: Fall, Spring. MIP 400C Capstone in Microbiology: Immunology Credits: 2 (2-0-0) Grade Mode: Traditional. Course Description: Special Course Fee: No. Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or MIP 400J Capstone in Microbiology: Big Data Sets in MIP 420, may be taken concurrently). Microbiology Credits: 2 (2-0-0) Terms Offered: Fall, Spring. Course Description: Discussion of literature on a topic of importance to Grade Mode: Traditional. the research community in the discipline. Special Course Fee: No. Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or MIP 400D Capstone in Microbiology: Microbial Diversity/ MIP 420, may be taken concurrently). Ecology Credits: 2 (2-0-0) Registration Information: Junior standing. Course Description: Terms Offered: Fall, Spring. Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or Grade Mode: Traditional. MIP 420, may be taken concurrently). Special Course Fee: No. Terms Offered: Fall, Spring. MIP 400K Capstone in Microbiology: Parasitology Credits: 2 (2-0-0) Grade Mode: Traditional. Course Description: Discussion of literature on a topic of importance to Special Course Fee: No. the research community in the discipline. MIP 400E Capstone in Microbiology: Microbial Credits: Prerequisite: (MIP 260 and MIP 342) and (MIP 351, may be taken 2 (2-0-0) concurrently or MIP 420, may be taken concurrently). Course Description: Registration Information: Junior standing. Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or Terms Offered: Fall, Spring. MIP 420, may be taken concurrently). Grade Mode: Traditional. Terms Offered: Fall, Spring. Special Course Fee: No. Grade Mode: Traditional. Special Course Fee: No. 4 Department of Microbiology, Immunology, and Pathology

MIP 400L Capstone in Microbiology: Biology Credits: MIP 400R Capstone in Microbiology: Food Microbiology Credits: 2 (2-0-0) 2 (2-0-0) Course Description: Discussion of literature on a topic of importance to Course Description: Discussion of literature on a topic of importance to the research community in the discipline. the research community in the discipline. Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or MIP 420, may be taken concurrently). MIP 420, may be taken concurrently). Registration Information: Junior standing. Registration Information: Junior standing. Terms Offered: Fall, Spring. Terms Offered: Fall, Spring. Grade Mode: Traditional. Grade Mode: Traditional. Special Course Fee: No. Special Course Fee: No. MIP 400M Capstone in Microbiology: Vector Biology Credits: 2 (2-0-0) MIP 400S Capstone in Microbiology: Biofilm Biology Credits: 2 (2-0-0) Course Description: Discussion of literature on a topic of importance to Course Description: Discussion of literature on a topic of importance to the research community in the discipline. the research community in the discipline. Prerequisite: (MIP 342 and MIP 462) and (MIP 351, may be taken Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or concurrently or MIP 420, may be taken concurrently). MIP 420, may be taken concurrently). Registration Information: Junior standing. Registration Information: Junior standing. Terms Offered: Fall, Spring. Terms Offered: Fall, Spring. Grade Mode: Traditional. Grade Mode: Traditional. Special Course Fee: No. Special Course Fee: No. MIP 400N Capstone in Microbiology: Environmental Sustainability & MIP 401 Laboratory Research Methods in Microbiology Credits: Health Science Credits: 2 (2-0-0) 4 (0-6-1) Course Description: Discussion of literature on a topic of importance to Course Description: Hands-on experience in laboratory research methods the research community in the discipline. for students working individually on a project which stems from a larger Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or research project of a faculty member's laboratory. All students will work MIP 420, may be taken concurrently). in the same facility equipped with appropriate equipment and supplies to Registration Information: Junior standing. conduct the student research project. Terms Offered: Fall, Spring. Prerequisite: MIP 150 and MIP 300 and MIP 302. Grade Mode: Traditional. Restriction: Must be a: Undergraduate. Special Course Fee: No. Registration Information: majors and Microbiology MIP 400O Capstone in Microbiology: Pathology of Infectious and Infectious Disease Concentration students only. Must register for Disease Credits: 2 (2-0-0) laboratory and recitation. Course Description: Discussion of literature on a topic of importance to Terms Offered: Fall, Spring. the research community in the discipline. Grade Mode: Traditional. Prerequisite: (MIP 315 and MIP 342) and (MIP 351, may be taken Special Course Fee: No. concurrently or MIP 420, may be taken concurrently). MIP 420 Medical and Molecular Virology Credits: 4 (4-0-0) Registration Information: Junior standing. Course Description: Principles of animal virology: structure, classification, Terms Offered: Fall, Spring. assay, diagnosis, control, replication, genetics, host-parasite Grade Mode: Traditional. relationships. Special Course Fee: No. Prerequisite: (MIP 342) and (BC 351, may be taken concurrently or MIP 400P Capstone in Microbiology: Veterinary Microbiology Credits: BC 401, may be taken concurrently). 2 (2-0-0) Term Offered: Fall. Course Description: Discussion of literature on a topic of importance to Grade Mode: Traditional. the research community in the discipline. Special Course Fee: No. Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or MIP 425 Virology and Cell Culture Laboratory Credits: 2 (0-4-0) MIP 420, may be taken concurrently). Course Description: Isolation and characterization of . Viral Registration Information: Junior standing. diagnostic and cell culture techniques. Terms Offered: Fall, Spring. Prerequisite: MIP 302 and MIP 420, may be taken concurrently. Grade Mode: Traditional. Term Offered: Fall. Special Course Fee: No. Grade Mode: Traditional. MIP 400Q Capstone in Microbiology: One Health Credits: 2 (2-0-0) Special Course Fee: No. Course Description: Discussion of literature on a topic of importance to the research community in the discipline. Prerequisite: (MIP 342) and (MIP 351, may be taken concurrently or MIP 420, may be taken concurrently). Registration Information: Junior standing. Terms Offered: Fall, Spring. Grade Mode: Traditional. Special Course Fee: No. Department of Microbiology, Immunology, and Pathology 5

MIP 432 Microbial Ecology Credits: 3 (2-0-1) MIP 470 Graduate Proposal Preparation Credit: 1 (0-0-1) Also Offered As: ESS 432. Course Description: Guidance for the process of preparing a proposal for Course Description: Principles of interactions with their submission to the National Science Foundation. living and non-living environments; implications for the environment, Prerequisite: None. plants, and . Restriction: Must not be a: Freshman, Sophomore, Junior. Prerequisite: MIP 300. Registration Information: Senior standing. This is a partial semester Registration Information: Must register for lecture and recitation. Credit course. Credit not allowed for both MIP 470 and MIP 481A2. not allowed for both ESS 432 and MIP 432. Term Offered: Fall. Term Offered: Fall (odd years). Grade Mode: S/U Sat/Unsat Only. Grade Mode: Traditional. Special Course Fee: No. Special Course Fee: No. MIP 492 Senior Professional Development Seminar Credits: 2 (1-0-1) MIP 433 Microbial Ecology Laboratory Credit: 1 (0-3-0) Course Description: Also Offered As: ESS 433. Prerequisite: MIP 342. Course Description: Experimental microbial ecology; the design, conduct Registration Information: Microbiology majors only. Must register for and interpretation of experiments that illustrate basic principles of lecture and recitation. microbial ecology. Term Offered: Fall. Prerequisite: MIP 300. Grade Mode: Traditional. Registration Information: Must be taken concurrently with ESS 432 or Special Course Fee: No. MIP 432. Credit not allowed for both ESS 433 and MIP 433. MIP 495 Independent Study Credits: Var[1-18] (0-0-0) Term Offered: Spring (even years). Course Description: Grade Mode: Traditional. Prerequisite: MIP 300. Special Course Fee: No. Registration Information: Written consent of department required. MIP 443 Microbial Physiology Credits: 4 (3-0-1) Terms Offered: Fall, Spring, Summer. Course Description: Structure, function of bacterial constituents; Grade Mode: Instructor Option. comparison with other . Bacterial growth, production, Special Course Fee: No. biosynthesis. MIP 496 Group Study Credits: Var[1-3] (0-0-0) Prerequisite: (MIP 300) and (BC 351 or BC 401). Course Description: Faculty-supervised investigation of areas of special Registration Information: Must register for lecture and laboratory. interest in microbiology, virology, microbial physiology, or microbial Term Offered: Spring. genetics. Grade Mode: Traditional. Prerequisite: None. Special Course Fee: No. Registration Information: Written consent of instructor required. MIP 450 Microbial Genetics Credits: 3 (3-0-0) Terms Offered: Fall, Spring. Course Description: Principles of genetics at molecular level; , Grade Mode: Traditional. recombination, complementation, suppression, control of gene Special Course Fee: No. expression, and recombinant DNA. MIP 498 Research Credits: Var[1-3] (0-0-0) Prerequisite: (MIP 300) and (BC 351, may be taken concurrently or Course Description: BC 401, may be taken concurrently). Prerequisite: MIP 302. Term Offered: Fall. Registration Information: Written consent of instructor required. Grade Mode: Traditional. Terms Offered: Fall, Spring, Summer. Special Course Fee: No. Grade Mode: Instructor Option. MIP 462 Parasitology and Vector Biology Credits: 5 (3-4-0) Special Course Fee: No. Also Offered As: BSPM 462 and BZ 462. MIP 520 Fundamentals of Prion Biology Credit: 1 (1-0-0) Course Description: , helminthes, and and related Course Description: Current state of prion research, future research arthropods of medical importance; , epidemiology, host directions, and the relationship of prion disease with other disease damage and control. systems. Critical reading and synthesis of the literature, with an Prerequisite: (BZ 110 or LIFE 103) and (MIP 302 or LIFE 206 or BZ 212). emphasis on writing skills. Registration Information: Credit allowed for only one of the following: Prerequisite: (BC 351 or MIP 342) and (MIP 300). MIP 462, BSPM 462, BZ 462. Must register for lecture and laboratory. Registration Information: Junior standing. Credit not allowed for both Term Offered: Fall. MIP 520 and MIP 581A3. Grade Mode: Traditional. Term Offered: Fall. Special Course Fee: No. Grade Mode: Traditional. Special Course Fee: No. 6 Department of Microbiology, Immunology, and Pathology

MIP 525 for Immunology Credit: 1 (1-0-0) MIP 545 Microbial Metagenomics/ Data Analysis Credits: Course Description: Understand and interpret flow cytometry principles. 2 (2-0-0) Background of flow cytometry, experimental design, applications, and Course Description: , microbes and their genetic material brief explanation of cell sorting. present in a host/environment, are linked to risk of disease in humans, Prerequisite: MIP 342 or MIP 651. animals, and plants. Metagenomics, including 16S rRNA community Registration Information: Senior standing. This is a partial semester survey methods and shotgun metagenomics, use high throughput course. Credit not allowed for both MIP 525 and MIP 581A4. sequencing technology to provide insight into the composition and Term Offered: Fall. potential function of microbiomes. Hands-on experience with using Grade Mode: Traditional. and statistical tools necessary to process and analyze the Special Course Fee: No. resulting large datasets. MIP 530 Advanced Molecular Virology Credits: 4 (3-0-1) Prerequisite: (DSCI 510) and (STAR 511 or STAT 511A). Course Description: -host interactions at the molecular and cellular Registration Information: Senior standing. This is a partial semester level. course. Credit not allowed for both MIP 545 and MIP 581A2. Prerequisite: (BC 351 or BC 401) and (BC 463 or MIP 450). Term Offered: Fall. Registration Information: Must register for lecture and recitation. Grade Mode: Traditional. Term Offered: Spring (even years). Special Course Fee: No. Grade Mode: Traditional. MIP 550 Microbial and Molecular Genetics Laboratory Credits: 4 (2-6-0) Special Course Fee: No. Course Description: Use of both genetics and molecular MIP 533 Epidemiology of Infectious Diseases/Zoonoses Credits: techniques to study gene structure, function, and regulation in bacteria. 3 (2-0-1) Prerequisite: MIP 302 and MIP 450. Also Offered As: VS 533. Registration Information: Written consent of department required. Must Course Description: Epidemiologic features of infectious and parasitic register for lecture and laboratory. diseases that have a major impact on community medicine. Term Offered: Spring. Prerequisite: MIP 300. Grade Mode: Traditional. Registration Information: Credit not allowed for both MIP 533 and Special Course Fee: Yes. VS 533. Must register for lecture and recitation. MIP 555 Principles and Mechanisms of Disease Credits: 3 (3-0-0) Term Offered: Spring. Course Description: Principles of disease processes; emphasis on Grade Mode: Traditional. reactivity of the diseased cell, , , or . Special Course Fee: No. Prerequisite: BMS 300. MIP 535 Vector Collection and Identification Methods Credit: 1 (0-4-0) Term Offered: Fall. Course Description: Training for the collection and morphological Grade Mode: Traditional. identification of mosquitoes and ticks. Special Course Fee: No. Prerequisite: None. MIP 563 Biology of Disease Vectors Credits: 3 (3-0-0) Restriction: Must not be a: Freshman, Sophomore. Course Description: Vector physiology and genomics, new strategies in Registration Information: Written consent of instructor. This is a partial vector control, and vector/host interactions. semester course. Required field trips. Credit not allowed for both MIP 535 Prerequisite: MIP 462 or BSPM 462 or BZ 462. and MIP 580A4. Term Offered: Spring (odd years). Term Offered: Fall (odd years). Grade Mode: Traditional. Grade Mode: Traditional. Special Course Fee: No. Special Course Fee: No. MIP 565 Next Generation Sequencing Platform/Libraries Credit: MIP 540 in Research Laboratories Credits: 2 (2-0-0) 1 (0-2-0) Course Description: Practical applications of biosafety principles, Also Offered As: BZ 565. including lab practices and regulatory aspects of research involving Course Description: Theoretical and experimental aspects of next infectious microorganisms and rDNA. generation sequencing experiments with a focus on the Illumina Prerequisite: MIP 300. platform. Students will create and sequence metagenomic and 16S rDNA Restriction: Must be a: Graduate. libraries from soil samples and unknown bacterial cultures. Registration Information: Sections may be offered: Online. Prerequisite: None. Terms Offered: Fall, Spring. Restriction: Must be a: Graduate. Grade Mode: Traditional. Registration Information: Graduate standing. This is a partial semester Special Course Fee: No. course. Credit allowed for only one of the following: BZ 565, CM 581A2, or MIP 543 RNA Biology Credits: 3 (3-0-0) MIP 565. Course Description: Gene expression and regulation that occurs at the Term Offered: Fall. level of RNA (e.g., splicing, stability, export, translation, RNAi, etc.). Grade Mode: Traditional. Prerequisite: BC 351, may be taken concurrently or BC 401, may be taken Special Course Fee: No. concurrently. Term Offered: Fall (odd years). Grade Mode: Traditional. Special Course Fee: No. Department of Microbiology, Immunology, and Pathology 7

MIP 570 Functional Genomics Credits: 3 (2-2-0) MIP 612 Applied Immunology Credits: 3 (3-0-0) Course Description: State-of-the-art genomic tools with applications to Course Description: Application of classic and modern principles in studies of and of infectious diseases. immunology currently being used in the medical, biotechnology and basic Prerequisite: MIP 300 and MIP 302 and MIP 443 and MIP 450. research fields. Registration Information: Must register for lecture and laboratory. Prerequisite: None. Term Offered: Fall. Restriction: Must be a: Graduate, Professional. Grade Mode: Traditional. Registration Information: Sections may be offered: Online. Enrollment in Special Course Fee: No. the face-to-face offering of the course requires admission to the M.S. in MIP 576 Bioinformatics Credits: 3 (3-0-0) Microbiology, Immunology, and Pathology, Plan B. Also Offered As: BSPM 576. Term Offered: Spring. Course Description: Technical computing across platforms using Grade Mode: Traditional. bioinformatics tools in molecular analysis. Special Course Fee: No. Prerequisite: BC 463 or BZ 310 or BZ 350 or CM 501 or CS 155 or MIP 613 Applied Microbiology and Virology Credits: 4 (4-0-0) ERHS 332 or MIP 275 or MIP 300 or MIP 450 or STAT 307. Course Description: Application of bacteria, fungi and viruses in Registration Information: Credit not allowed for both MIP 576 and translational research, from drug and vaccine development to the BSPM 576. generation of clean energy. Terms Offered: Fall, Spring. Prerequisite: None. Grade Mode: Traditional. Restriction: Must be a: Graduate, Professional. Special Course Fee: No. Registration Information: Sections may be offered: Online. Enrollment in MIP 577 Computer Analysis in Genetics Credits: 2 (0-4-0) the face-to-face offering of the course requires admission to the M.S. in Also Offered As: BZ 577. Microbiology, Immunology, and Pathology, Plan B. Course Description: Computational and statistical techniques and Term Offered: Fall. practical exercises in discrete and quantitative genetics. Grade Mode: Traditional. Prerequisite: MIP 578, may be taken concurrently or BZ 578. Special Course Fee: No. Registration Information: Credit not allowed for both MIP 577 and MIP 614 Medical Microbiology Credits: 3 (3-0-0) BZ 577. Course Description: In-depth examination of the pathogenic mechanisms Term Offered: Fall. of medically important bacteria, fungi, parasites and viruses. Grade Mode: Traditional. Prerequisite: None. Special Course Fee: No. Restriction: Must be a: Graduate, Professional. MIP 578 Genetics of Natural Credits: 4 (3-0-1) Registration Information: Sections may be offered: Online. Enrollment in Also Offered As: BZ 578. the face-to-face offering of the course requires admission to the M.S. in Course Description: Theoretical and empirical aspects of the genetics Microbiology, Immunology, and Pathology, Plan B. of natural populations; current molecular techniques and statistical Term Offered: Spring. analysis. Grade Mode: Traditional. Prerequisite: (BZ 350 or LIFE 201A or LIFE 201B or SOCR 330) and Special Course Fee: No. (STAT 201 or STAT 301 or STAT 307 or ERHS 307). MIP 615 Ophthalmic Pathology Credit: 1 (1-0-0) Registration Information: Must register for lecture and recitation. Credit Course Description: Background in normal ocular as well as not allowed for both MIP 578 and BZ 578. pathologic changes in the eye, taught through a combination of lectures Term Offered: Fall. and class discussions. Grade Mode: Traditional. Prerequisite: None. Special Course Fee: No. Restriction: Must be a: Graduate, Professional. MIP 611 Advanced Microbiological Research Methods Credits: 4 (2-0-2) Term Offered: Fall. Course Description: In-depth presentation of the ever-growing arsenal Grade Mode: Traditional. of techniques needed to be an effective experimental / Special Course Fee: No. molecular . MIP 616 Modern Molecular Biology for Credits: Prerequisite: None. 4 (3-0-1) Restriction: Must be a: Graduate, Professional. Course Description: Develop a working knowledge in the theory and Registration Information: Must register for lecture and recitation. Written applications of modern molecular biology to applied and translational consent of instructor. Sections may be offered: Online. research uses in microbiology. Term Offered: Fall. Prerequisite: None. Grade Mode: Traditional. Restriction: Must be a: Graduate, Professional. Special Course Fee: No. Registration Information: Admission to the MS in Microbiology, Immunology, and Pathology, Plan B program. Must register for lecture and recitation. Sections may be offered: Online. Term Offered: Fall. Grade Mode: Traditional. Special Course Fee: No. 8 Department of Microbiology, Immunology, and Pathology

MIP 617 Principles of Biodefense/Emerging Credits: MIP 628 to Credits: 3 (3-0-0) 3 (3-0-0) Course Description: How microorganisms have evolved to counteract Course Description: In-depth analysis of the physiology, biology and the immune system and how the immune system has evolved to resist epidemiology of biodefense agents and emerging pathogens. microbes. Prerequisite: None. Prerequisite: None. Restriction: Must be a: Graduate, Professional. Restriction: Must be a: Graduate, Professional. Registration Information: Admission to the MS in Microbiology, Term Offered: Spring (odd years). Immunology, and Pathology, Plan B program. Sections may be offered: Grade Mode: Traditional. Online. Special Course Fee: No. Term Offered: Spring. MIP 630 Advances in Microbial Physiology Credits: 3 (3-0-0) Grade Mode: Traditional. Course Description: Contemporary developments in bacterial structure, Special Course Fee: No. function, , and genetics. MIP 618 MIP Masters Seminar Series Credit: 1 (0-0-1) Prerequisite: MIP 443. Course Description: Foster the development of MIP master’s students by Restriction: Must be a: Graduate, Professional. improving communication skills and discussion of cutting edge research. Term Offered: Fall (even years). Prerequisite: None. Grade Mode: Traditional. Restriction: Must be a: Graduate, Professional. Special Course Fee: No. Registration Information: Admission to the MS in Microbiology, MIP 636 Mechanisms of Viral Infection and Disease Credits: 4 (3-0-1) Immunology, and Pathology, Plan B program. May be taken twice for Course Description: Cytopathic mechanisms, pathogenetic events in viral credit. Sections may be offered: Online. diseases; host response and antiviral immunity; induction by DNA Terms Offered: Fall, Spring. and RNA viruses. Grade Mode: Traditional. Prerequisite: MIP 420 or MIP 530. Special Course Fee: No. Restriction: Must be a: Graduate, Professional. MIP 619 MIP Masters Topics Credits: 2 (1-0-1) Registration Information: Must register for lecture and recitation. Course Description: Foster the development of MIP master’s students by Term Offered: Spring (odd years). improving communication skills and discussion of cutting edge research. Grade Mode: Traditional. Prerequisite: None. Special Course Fee: No. Restriction: Must be a: Graduate, Professional. MIP 643 Grant Writing for Microbiology/Pathology Credit: 1 (1-0-0) Registration Information: Admission to the MS in Microbiology, Course Description: To effectively communicate ideas, goals and Immunology, and Pathology, Plan B program. Must register for lecture and approaches in a scientific grant proposal. recitation. May be taken twice for credit. Sections may be offered: Online. Prerequisite: None. Terms Offered: Fall, Spring. Restriction: Must be a: Graduate, Professional. Grade Mode: Traditional. Registration Information: Enrollment in an MIP graduate program. Special Course Fee: No. Term Offered: Spring. MIP 620 Advanced Prion Biology Credit: 1 (1-0-0) Grade Mode: Traditional. Course Description: Advanced mechanisms and theories of prion Special Course Fee: No. diseases and other misfolding neurodegenerative diseases. MIP 651 Immunobiology Credits: 3 (3-0-0) Prerequisite: MIP 520. Course Description: Structure, function, regulation of immunoglobulins Restriction: Must be a: Graduate, Professional. and the immune system. Cellular immunity including transplantation and Registration Information: Credit not allowed for both MIP 620 and MIP cancer. 680A3. Prerequisite: MIP 342. Term Offered: Spring. Restriction: Must be a: Graduate, Professional. Grade Mode: Traditional. Term Offered: Fall. Special Course Fee: No. Grade Mode: Traditional. MIP 624 Advanced Topics in Microbial Ecology Credits: 2 (1-0-1) Special Course Fee: No. Course Description: Recent conceptual developments in microbial MIP 654 Research Policies and Regulations Credit: 1 (1-0-0) ecology, emphasizing theoretical aspects of microbial ecology, Course Description: Reviews CSU and federal policies, rules, and particularly in an evolutionary context. regulations on integrity, use of humans and animals, authorship, data, Prerequisite: (MIP 300) and (ESS 432 or MIP 432). genetics, etc., using case studies. Restriction: Must be a: Graduate, Professional. Prerequisite: None. Registration Information: Must register for lecture and recitation. Restriction: Must be a: Graduate, Professional. Term Offered: Fall (odd years). Registration Information: Sections may be offered: Online. Grade Mode: Traditional. Terms Offered: Fall, Spring. Special Course Fee: No. Grade Mode: Traditional. Special Course Fee: No. Department of Microbiology, Immunology, and Pathology 9

MIP 666 Writing Scientific Manuscripts Credits: 3 (0-0-3) MIP 700 Topics in Microbiology Credit: 1 (1-0-0) Course Description: Writing biological science manuscripts for Course Description: Current literature in bacteriology, virology, genetics, publication. and immunology. Prerequisite: None. Prerequisite: MIP 300. Restriction: Must be a: Graduate, Professional. Restriction: Must be a: Graduate, Professional. Registration Information: Written consent of instructor. Terms Offered: Fall, Spring. Term Offered: Fall (even years). Grade Mode: Traditional. Grade Mode: Traditional. Special Course Fee: No. Special Course Fee: No. MIP 720 Methods of Analysis Credits: 2 (1-3-0) MIP 670 Molecular Immunology and Credits: 3 (3-0-0) Course Description: Structural analysis of complex Course Description: Molecular basis and genetics of immune response. using gas , , and nuclear magnetic of immunologically mediated diseases. resonance. Prerequisite: MIP 651. Prerequisite: CHEM 346. Restriction: Must be a: Graduate, Professional. Restriction: Must be a: Graduate, Professional. Term Offered: Fall (odd years). Registration Information: Must register for lecture and laboratory. Grade Mode: Traditional. Term Offered: Spring (odd years). Special Course Fee: No. Grade Modes: S/U within Student Option, Trad within Student Option. MIP 675 Advanced Bioanalytic Pathology Credits: 2 (2-0-0) Special Course Fee: No. Course Description: Laboratory medicine for post-graduate MIP 730 Principles of Flow Cytometry & Cell Sorting Credits: 2 (1-2-0) and professional veterinary medical students. Also Offered As: ERHS 730. Prerequisite: VM 724. Course Description: Explores the background of flow cytometry, Restriction: Must be a: Graduate, Professional. fluorescent , experimental design, Flow Cytometry data Registration Information: Written consent of instructor or DVM degree Analysis, applications, and principles of cell sorting. required. Prerequisite: None. Term Offered: Spring (odd years). Restriction: Must be a: Graduate, Professional. Grade Mode: Traditional. Registration Information: Must register for lecture and laboratory. This Special Course Fee: No. is a partial semester course. Credit not allowed for both ERHS 730 and MIP 687 BioPharma Internship Credit: 1 (0-0-3) MIP 730. Course Description: Gain experience with a supervised mock project that Term Offered: Spring. encompasses the various biopharmaceutical areas while working with Grade Mode: Traditional. experienced staff leading the various units. Special Course Fee: No. Prerequisite: MIP 540 and MIP 611. MIP 740 Microbial and Molecular Genetics Credits: 3 (2-0-1) Restriction: Must be a: Graduate, Professional. Course Description: Molecular biology and genetics of prokaryotic and Registration Information: Admission to the MS Microbiology Plan B eukaryotic cells and their viruses; strategies for genetic manipulation. program. Written consent of instructor. This is a partial semester course. Prerequisite: MIP 450. Background check required. Credit not allowed for both MIP 681A3 and Restriction: Must be a: Graduate, Professional. MIP 687. Registration Information: Must register for lecture and recitation. Term Offered: Spring. Term Offered: Spring (odd years). Grade Mode: Instructor Option. Grade Mode: Traditional. Special Course Fee: No. Special Course Fee: No. MIP 698 Research Credits: Var[1-18] (0-0-0) MIP 760 Mechanisms of Bacterial Pathogenesis Credits: 3 (2-0-1) Course Description: Course Description: Mechanisms of bacterium-host interaction at Prerequisite: None. molecular and cellular levels in pathogenesis of bacterial disease. Restriction: Must be a: Graduate, Professional. Prerequisite: BC 351 and MIP 342. Registration Information: Enrollment in an MIP graduate program. Restriction: Must be a: Graduate, Professional. Terms Offered: Fall, Spring, Summer. Registration Information: Must register for lecture and recitation. Grade Mode: Instructor Option. Term Offered: Fall (odd years). Special Course Fee: No. Grade Mode: Traditional. MIP 699 Thesis Credits: Var[1-18] (0-0-0) Special Course Fee: No. Course Description: MIP 765 Comparative Credits: 2 (1-2-0) Prerequisite: None. Course Description: Spontaneous diseases of nervous system of Restriction: Must be a: Graduate, Professional. domesticated, laboratory, and wild animals. Registration Information: Enrollment in an MIP graduate program. Prerequisite: None. Terms Offered: Fall, Spring, Summer. Restriction: Must be a: Graduate, Professional. Grade Mode: Instructor Option. Registration Information: Must register for lecture and laboratory. Special Course Fee: No. Term Offered: Spring (odd years). Grade Mode: Traditional. Special Course Fee: No. 10 Department of Microbiology, Immunology, and Pathology

MIP 766 -- Credit: 1 (0-0-1) MIP 784 Supervised College Teaching Credits: Var[1-18] (0-0-0) Course Description: Discussion of cytology cases that are diagnostically Course Description: challenging, medically interesting, or classic case examples. Discussions Prerequisite: None. and microscopic reviews of the cases will be led by a clinical pathologist. Restriction: Must be a: Graduate, Professional. Prerequisite: MIP 786A and MIP 786B and MIP 786C. Registration Information: Written consent of department required. Restriction: Must be a: Graduate, Professional. Terms Offered: Fall, Spring, Summer. Registration Information: Written consent of instructor. Grade Mode: Instructor Option. Term Offered: Spring. Special Course Fee: No. Grade Mode: S/U Sat/Unsat Only. MIP 786A Practicum: Comparative Gross and Histologic Special Course Fee: No. Pathology Credits: Var[1-18] (0-0-0) MIP 767 Advanced General Pathology Credits: 3 (3-0-0) Course Description: Course Description: In-depth, detailed study of general pathology Prerequisite: None. and molecular mechanisms of disease. Help prepare students in the Restriction: Must be a: Graduate, Professional. Anatomic and/or Clinical Pathology Residency prepare for the ACVP Registration Information: Post-DVM graduate students only. Board examination. Enhance the pathology knowledge and skills of Terms Offered: Fall, Spring, Summer. Professional students and graduate students in Grade Mode: Instructor Option. related disciplines. Special Course Fee: No. Prerequisite: None. MIP 786B Practicum: Credits: Var[1-18] (0-0-0) Restriction: Must be a: Graduate, Professional. Course Description: Term Offered: Fall. Prerequisite: None. Grade Mode: Traditional. Restriction: Must be a: Graduate, Professional. Special Course Fee: No. Registration Information: Post-DVM graduate students only. MIP 768 Advanced Clinical Pathology Credits: 2 (2-0-0) Terms Offered: Fall, Spring, Summer. Course Description: In-depth clinical pathology (cytology, , Grade Mode: Instructor Option. and biochemistry) for post-professional students in CVMBS residency Special Course Fee: No. and/or graduate degree programs. MIP 786C Practicum: Clinical Pathology Credits: Var[1-18] (0-0-0) Prerequisite: None. Course Description: Restriction: Must be a: Graduate, Professional. Prerequisite: None. Registration Information: Credit not allowed for both MIP 768 and MIP Restriction: Must be a: Graduate, Professional. 781A2. Registration Information: Post-DVM graduate students only. Term Offered: Spring. Terms Offered: Fall, Spring, Summer. Grade Mode: Traditional. Grade Mode: Instructor Option. Special Course Fee: No. Special Course Fee: No. MIP 778 Pathobiology of Laboratory Animals Credits: 3 (3-0-0) MIP 786D Practicum: Credits: Var[1-18] (0-0-0) Course Description: Unique natural biology and diseases of laboratory Course Description: animal species emphasizing clinical, diagnostic, morphologic and clinical Prerequisite: None. pathologic features. Restriction: Must be a: Graduate, Professional. Prerequisite: None. Registration Information: Post-DVM graduate students only. Restriction: Must be a: Graduate, Professional. Terms Offered: Fall, Spring, Summer. Term Offered: Spring (even years). Grade Mode: S/U Sat/Unsat Only. Grade Mode: Traditional. Special Course Fee: No. Special Course Fee: No. MIP 792A Seminar: Research/Graduate Credits: Var[1-3] (0-0-0) MIP 779 Laboratory Animal Pathology Rotation Credit: 1 (1-0-0) Course Description: Course Description: Using case material compiled from submissions to Prerequisite: None. the Laboratory Animal Resources necropsy service, the VTH Diagnostic Restriction: Must be a: Graduate, Professional. services, the Armed Forces Institute of Pathology, and other resources, Registration Information: M.S. and Ph.D. candidates only. Maximum of 3 analyze selected slides demonstrating histologic pathology in laboratory credits allowed per subtopic. animals. Prepare a description of the slide, provide a diagnosis and a brief Terms Offered: Fall, Spring, Summer. summary of the pathogenesis. Grade Mode: Instructor Option. Prerequisite: MIP 778. Special Course Fee: No. Restriction: Must be a: Graduate, Professional. Registration Information: Credit not allowed for both MIP 779 and MIP MIP 792B Seminar: Research/Faculty Credits: Var[1-3] (0-0-0) 780A1. Course Description: Term Offered: Spring (even years). Prerequisite: None. Grade Mode: Traditional. Restriction: Must be a: Graduate, Professional. Special Course Fee: No. Registration Information: M.S. and Ph.D. candidates only. Maximum of 3 credits allowed per subtopic. Terms Offered: Fall, Spring, Summer. Grade Mode: Instructor Option. Special Course Fee: No. Department of Microbiology, Immunology, and Pathology 11

MIP 792C Seminar: Microscopic and Bioanalytic Pathology Credits: MIP 799 Dissertation Credits: Var[1-18] (0-0-0) Var[1-3] (0-0-0) Course Description: Course Description: Prerequisite: None. Prerequisite: None. Restriction: Must be a: Graduate, Professional. Restriction: Must be a: Graduate, Professional. Registration Information: Ph.D. candidates only. Maximum of 3 credits Registration Information: M.S. and Ph.D. candidates only. Maximum of 3 allowed per subtopic. credits allowed per subtopic. Terms Offered: Fall, Spring, Summer. Terms Offered: Fall, Spring, Summer. Grade Mode: Instructor Option. Grade Mode: Instructor Option. Special Course Fee: No. Special Course Fee: No. MIP 792D Seminar: Anatomic Pathology Credits: Var[1-3] (0-0-0) Course Description: Prerequisite: None. Restriction: Must be a: Graduate, Professional. Registration Information: M.S. and Ph.D. candidates only. Maximum of 3 credits allowed per subtopic. Terms Offered: Fall, Spring, Summer. Grade Mode: Instructor Option. Special Course Fee: No. MIP 792E Seminar: Clinical Pathology Credits: Var[1-3] (0-0-0) Course Description: Prerequisite: None. Restriction: Must be a: Graduate, Professional. Registration Information: M.S. and Ph.D. candidates only. Maximum of 3 credits allowed per subtopic. Terms Offered: Fall, Spring, Summer. Grade Mode: Instructor Option. Special Course Fee: No. MIP 795 Independent Study Credits: Var[1-18] (0-0-0) Course Description: Prerequisite: None. Restriction: Must be a: Graduate, Professional. Registration Information: Written consent of department required. Terms Offered: Fall, Spring, Summer. Grade Mode: Instructor Option. Special Course Fee: No. MIP 796 Group Study Credits: Var[1-18] (0-0-0) Course Description: Prerequisite: None. Restriction: Must be a: Graduate, Professional. Terms Offered: Fall, Spring, Summer. Grade Mode: Instructor Option. Special Course Fee: No. MIP 798 Research Credits: Var[1-18] (0-0-0) Course Description: Prerequisite: None. Restriction: Must be a: Graduate, Professional. Registration Information: Ph.D. candidates only. Maximum of 3 credits allowed per subtopic. Terms Offered: Fall, Spring, Summer. Grade Mode: Instructor Option. Special Course Fee: No.

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