“Candidatus Rickettsia Kellyi,” India
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Ohio Department of Health, Bureau of Infectious Diseases Disease Name Class A, Requires Immediate Phone Call to Local Health
Ohio Department of Health, Bureau of Infectious Diseases Reporting specifics for select diseases reportable by ELR Class A, requires immediate phone Susceptibilities specimen type Reportable test name (can change if Disease Name other specifics+ call to local health required* specifics~ state/federal case definition or department reporting requirements change) Culture independent diagnostic tests' (CIDT), like BioFire panel or BD MAX, E. histolytica Stain specimen = stool, bile results should be sent as E. histolytica DNA fluid, duodenal fluid, 260373001^DETECTED^SCT with E. histolytica Antigen Amebiasis (Entamoeba histolytica) No No tissue large intestine, disease/organism-specific DNA LOINC E. histolytica Antibody tissue small intestine codes OR a generic CIDT-LOINC code E. histolytica IgM with organism-specific DNA SNOMED E. histolytica IgG codes E. histolytica Total Antibody Ova and Parasite Anthrax Antibody Anthrax Antigen Anthrax EITB Acute Anthrax EITB Convalescent Anthrax Yes No Culture ELISA PCR Stain/microscopy Stain/spore ID Eastern Equine Encephalitis virus Antibody Eastern Equine Encephalitis virus IgG Antibody Eastern Equine Encephalitis virus IgM Arboviral neuroinvasive and non- Eastern Equine Encephalitis virus RNA neuroinvasive disease: Eastern equine California serogroup virus Antibody encephalitis virus disease; LaCrosse Equivocal results are accepted for all California serogroup virus IgG Antibody virus disease (other California arborviral diseases; California serogroup virus IgM Antibody specimen = blood, serum, serogroup -
Paradoxical Evolution of Rickettsial Genomes
Ticks and Tick-borne Diseases 10 (2019) 462–469 Contents lists available at ScienceDirect Ticks and Tick-borne Diseases journal homepage: www.elsevier.com/locate/ttbdis Paradoxical evolution of rickettsial genomes T ⁎ Awa Diopa, Didier Raoultb, Pierre-Edouard Fourniera, a UMR VITROME, Aix-Marseille University, IRD, Service de Santé des Armées, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Uuniversitaire Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005, Marseille, France b UMR MEPHI, Aix-Marseille University, IRD, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Uuniversitaire Méditerranée Infection, Marseille, France ARTICLE INFO ABSTRACT Keywords: Rickettsia species are strictly intracellular bacteria that evolved approximately 150 million years ago from a Rickettsia presumably free-living common ancestor from the order Rickettsiales that followed a transition to an obligate Genomics intracellular lifestyle. Rickettsiae are best known as human pathogens vectored by various arthropods causing a Evolution range of mild to severe human diseases. As part of their obligate intracellular lifestyle, rickettsial genomes have Virulence undergone a convergent evolution that includes a strong genomic reduction resulting from progressive gene Genome rearrangement degradation, genomic rearrangements as well as a paradoxical expansion of various genetic elements, notably Non-coding DNA Gene loss small RNAs and short palindromic elements whose role remains unknown. This reductive evolutionary process is DNA repeats not unique to members of the Rickettsia genus but is common to several human pathogenic bacteria. Gene loss, gene duplication, DNA repeat duplication and horizontal gene transfer all have shaped rickettsial genome evolution. Gene loss mostly involved amino-acid, ATP, LPS and cell wall component biosynthesis and tran- scriptional regulators, but with a high preservation of toxin-antitoxin (TA) modules, recombination and DNA repair proteins. -
Pdf Files/WHA58- 6
Peer-Reviewed Journal Tracking and Analyzing Disease Trends pages 527–680 EDITOR-IN-CHIEF D. Peter Drotman EDITORIAL STAFF EDITORIAL BOARD Founding Editor Dennis Alexander, Addlestone Surrey, United Kingdom Joseph E. McDade, Rome, Georgia, USA Barry J. Beaty, Ft. Collins, Colorado, USA Managing Senior Editor Martin J. Blaser, New York, New York, USA Polyxeni Potter, Atlanta, Georgia, USA David Brandling-Bennet, Washington, D.C., USA Associate Editors Donald S. Burke, Baltimore, Maryland, USA Paul Arguin, Atlanta, Georgia, USA Arturo Casadevall, New York, New York, USA Charles Ben Beard, Ft. Collins, Colorado, USA Kenneth C. Castro, Atlanta, Georgia, USA David Bell, Atlanta, Georgia, USA Thomas Cleary, Houston, Texas, USA Jay C. Butler, Anchorage, Alaska, USA Anne DeGroot, Providence, Rhode Island, USA Charles H. Calisher, Ft. Collins, Colorado, USA Vincent Deubel, Shanghai, China Paul V. Effler, Honolulu, Hawaii, USA Stephanie James, Bethesda, Maryland, USA Ed Eitzen, Washington, D.C., USA Brian W.J. Mahy, Atlanta, Georgia, USA Duane J. Gubler, Honolulu, Hawaii, USA Nina Marano, Atlanta, Georgia, USA Richard L. Guerrant, Charlottesville, Virginia, USA Martin I. Meltzer, Atlanta, Georgia, USA Scott Halstead, Arlington, Virginia, USA David Morens, Bethesda, Maryland, USA David L. Heymann, Geneva, Switzerland J. Glenn Morris, Baltimore, Maryland, USA Daniel B. Jernigan, Atlanta, Georgia, USA Marguerite Pappaioanou, St. Paul, Minnesota, USA Charles King, Cleveland, Ohio, USA Tanja Popovic, Atlanta, Georgia, USA Keith Klugman, Atlanta, Georgia, USA Patricia M. Quinlisk, Des Moines, Iowa, USA Takeshi Kurata, Tokyo, Japan Jocelyn A. Rankin, Atlanta, Georgia, USA S.K. Lam, Kuala Lumpur, Malaysia Didier Raoult, Marseilles, France Bruce R. Levin, Atlanta, Georgia, USA Pierre Rollin, Atlanta, Georgia, USA Myron Levine, Baltimore, Maryland, USA David Walker, Galveston, Texas, USA Stuart Levy, Boston, Massachusetts, USA David Warnock, Atlanta, Georgia, USA John S. -
Tick- and Flea-Borne Rickettsial Emerging Zoonoses Philippe Parola, Bernard Davoust, Didier Raoult
Tick- and flea-borne rickettsial emerging zoonoses Philippe Parola, Bernard Davoust, Didier Raoult To cite this version: Philippe Parola, Bernard Davoust, Didier Raoult. Tick- and flea-borne rickettsial emerging zoonoses. Veterinary Research, BioMed Central, 2005, 36 (3), pp.469-492. 10.1051/vetres:2005004. hal- 00902973 HAL Id: hal-00902973 https://hal.archives-ouvertes.fr/hal-00902973 Submitted on 1 Jan 2005 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Vet. Res. 36 (2005) 469–492 469 © INRA, EDP Sciences, 2005 DOI: 10.1051/vetres:2005004 Review article Tick- and flea-borne rickettsial emerging zoonoses Philippe PAROLAa, Bernard DAVOUSTb, Didier RAOULTa* a Unité des Rickettsies, CNRS UMR 6020, IFR 48, Faculté de Médecine, Université de la Méditerranée, 13385 Marseille Cedex 5, France b Direction Régionale du Service de Santé des Armées, BP 16, 69998 Lyon Armées, France (Received 30 March 2004; accepted 5 August 2004) Abstract – Between 1984 and 2004, nine more species or subspecies of spotted fever rickettsiae were identified as emerging agents of tick-borne rickettsioses throughout the world. Six of these species had first been isolated from ticks and later found to be pathogenic to humans. -
Using Core Genome Alignments to Assign Bacterial Species 2
bioRxiv preprint doi: https://doi.org/10.1101/328021; this version posted May 22, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 Using Core Genome Alignments to Assign Bacterial Species 2 3 Matthew Chunga,b, James B. Munroa, Julie C. Dunning Hotoppa,b,c,# 4 a Institute for Genome Sciences, University of Maryland Baltimore, Baltimore, MD 21201, USA 5 b Department of Microbiology and Immunology, University of Maryland Baltimore, Baltimore, MD 6 21201, USA 7 c Greenebaum Comprehensive Cancer Center, University of Maryland Baltimore, Baltimore, MD 21201, 8 USA 9 10 Running Title: Core Genome Alignments to Assign Bacterial Species 11 12 #Address correspondence to Julie C. Dunning Hotopp, [email protected]. 13 14 Word count Abstract: 371 words 15 Word count Text: 4,833 words 16 1 bioRxiv preprint doi: https://doi.org/10.1101/328021; this version posted May 22, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 17 ABSTRACT 18 With the exponential increase in the number of bacterial taxa with genome sequence data, a new 19 standardized method is needed to assign bacterial species designations using genomic data that is 20 consistent with the classically-obtained taxonomy. -
Copyrighted Material
361 Index a – PCR 224 abdominal and intestinal anthrax 14 – – virus culture and antigen testing 224 abscesses 40 – prevention 340–341 acid-fast bacilli (AFB) 151 – protection 338–339 activated partial thromboplastin time (APTT) – treatment 342 219 Argentinian hemorrhagic fever (AHF) 213, Advisory Committee on Immunization 217, 219, 220 Practices (ACIP) 203 ‘‘Army Vaccine’’ 97 African tick bite fever (ATBF) 124, 129, 142 arthropod-borne infections 124, 125, 127, agar gel immunodiffusion (AGID) 181 128, 129, 139, 142 Agrobacterium 20 avian influenza viruses (AIVs) 177, 178 Alphaproteobacteria 124 Amblyomma hebraeum 129 b Amblyomma variegatum 129 bacille Calmette–Guerin´ (BCG) 150, 153, amplified fragment length polymorphism 155 (AFLP) 159 Bacillus anthracis 5, 159 Anaplasmataceae 124, 126 – characteristics 5–6 Andes virus (ANDV) 273, 276, 277 – clinical and pathological findings anthrax. See Bacillus anthracis 13–14 antibiotic resistance 7–8 – – abdominal and intestinal anthrax 14 antigen detection 8 – – inhalation and pulmonary anthrax 14 Antiqua biovar 93 – – oropharyngeal anthrax 14 Arenaviridae 253 – clinical guidelines 297 arenaviruses 211–212 – decontamination 296 – clinical signs – diagnosis – – New World hemorrhagic fevers 214–215 – – antibiotic resistance 7–8 – – Old World hemorrhagic fevers 214 – – antigen detection 8 – decontamination 340 – – chromosome 10–11 – diagnostics COPYRIGHTED– – growth characteristics MATERIAL 6–7 – – serological tests 223 – – MLVA, SNR, and SNP typing 11 – disinfection 339–340 – – molecular identification 8–10 – epidemiology – – phage testing and biochemistry 8 – – New World 213–214 – – phenotypical identification 6 – – Old World 212–213 – – serological investigations 11 – pathogenesis 218–223 – disinfection 295, 296 – pathological signs – epidemiology 15 – – New World hemorrhagic fevers 217–218 – pathogenesis – – Old World hemorrhagic fevers 215–216 – – animals 12 BSL3 and BSL4 Agents: Epidemiology, Microbiology, and Practical Guidelines, First Edition. -
Rocky Mountain Spotted Fever
23.03.2013 CHYPRE «Emerging Rickettsioses» © by author ESCMID Online Lecture Library Didier Raoult Marseille - France [email protected] www.mediterranee-infection.com Gram negative bacterium Strictly intracellular Transmitted by arthropods: ticks, fleas, lice,© mites by author ESCMIDMosquitoes? Online Lecture Library U R 2 Louse borne disease - typhus Tick borne : the big killer - RMSF Other: less severe Flea borne - Murine typhus (Maxcy 1925 and Mooser 1921 ) Mite borne diseases - Scrub typhus (tsutsugamushi disease) Rickettsial pox (Huebner 1946© ) by author OtherESCMID rickettsia: non Online pathogenic Lecture Library Any Gram negative intracellular bacteria= Rickettsiales U R 3 NEW RICKETTSIAL DISEASES Many new diseases comparable to Arboviruses New clinical features no rash but adenopathy (R. slovaca, R. raoultii ) no rash, no inoculation eschar (R. helvetica ) others? Several species involved in a same area R. conorii and R. africae - Africa R. conorii, R. mongolotimonae© by author- France R. conorii, R. aeschlimannii - Spain, North Africa R. typhi and R. felis - USA ESCMID R. honei and R.Online australis - Australia Lecture Library R. rickettsii and R. parkeri - USA R. conorii and R. helvetica, R. slovaca - Switzerland U R 4 SITUATION DURING THE XXTH CENTURY One tick borne rickettsiosis per geographical area R. rickettsii agent of RMSF in the USA – other found in ticks: non pathogenic rickettsia (such as Coxiella burnetii or Legionella pneumophila) R. conorii alone in Europe© byand author Africa ESCMID -
Microbial Source Tracking in Coastal Recreational Waters of Southern Maine
University of New Hampshire University of New Hampshire Scholars' Repository Master's Theses and Capstones Student Scholarship Fall 2017 MICROBIAL SOURCE TRACKING IN COASTAL RECREATIONAL WATERS OF SOUTHERN MAINE: RELATIONSHIPS BETWEEN ENTEROCOCCI, ENVIRONMENTAL FACTORS, POTENTIAL PATHOGENS, AND FECAL SOURCES Derek Rothenheber University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/thesis Recommended Citation Rothenheber, Derek, "MICROBIAL SOURCE TRACKING IN COASTAL RECREATIONAL WATERS OF SOUTHERN MAINE: RELATIONSHIPS BETWEEN ENTEROCOCCI, ENVIRONMENTAL FACTORS, POTENTIAL PATHOGENS, AND FECAL SOURCES" (2017). Master's Theses and Capstones. 1133. https://scholars.unh.edu/thesis/1133 This Thesis is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Master's Theses and Capstones by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. MICROBIAL SOURCE TRACKING IN COASTAL RECREATIONAL WATERS OF SOUTHERN MAINE: RELATIONSHIPS BETWEEN ENTEROCOCCI, ENVIRONMENTAL FACTORS, POTENTIAL PATHOGENS, AND FECAL SOURCES BY DEREK ROTHENHEBER Microbiology BS, University of Maine, 2013 THESIS Submitted to the University of New Hampshire In Partial Fulfillment of the Requirements for the Degree of Master of Science in Microbiology September, 2017 This thesis has been examined and approved in partial fulfillment of the -
Rocky Mountain Spotted Fever
Spotted Fevers Importance Spotted fevers, which are caused by Rickettsia spp. in the spotted fever group (including (SFG), have been recognized in people for more than a hundred years. The clinical signs are broadly similar in all of these diseases, but the course ranges from mild and Rocky Mountain self-limited to severe and life-threatening. For a long time, spotted fevers were thought to be caused by only a few organisms, including Rickettsia rickettsii (Rocky Spotted Fever Mountain spotted fever) in the Americas, R. conorii (Mediterranean spotted fever) in the Mediterranean region and R. australis (Queensland tick typhus) in Australia. and Many additional species have been recognized as human pathogens since the 1980s. Mediterranean These infections are easily misidentified with commonly used diagnostic tests. For example, some illnesses once attributed to R. rickettsii are caused by R. parkeri, a less Spotted Fever) virulent organism. Animals can be infected with SFG rickettsiae, and develop antibodies to these organisms. With the exception of Rocky Mountain spotted fever and possibly Mediterranean spotted fever in dogs, there is no strong evidence that these organisms Last Updated: November 2012 are pathogenic in animals. It is nevertheless possible that illnesses have not been recognized, or have been attributed to another agent. Rocky Mountain spotted fever, which is a recognized illness among dogs in the North America, was only recently documented in dogs in South America. Etiology Spotted fevers are caused by Rickettsia spp., which are pleomorphic, obligate intracellular, Gram negative coccobacilli in the family Rickettsiaceae and order Rickettsiales of the α-Proteobacteria. The genus Rickettsia contains at least 25 officially validated species and many incompletely characterized organisms. -
Syndromic Classification of Rickettsioses
International Journal of Infectious Diseases 28 (2014) 126–139 Contents lists available at ScienceDirect International Journal of Infectious Diseases jou rnal homepage: www.elsevier.com/locate/ijid Review Syndromic classification of rickettsioses: an approach for clinical practice ´ a ´ b a b, Alvaro A. Faccini-Martı´nez , Lara Garcı´a-Alvarez , Marylin Hidalgo , Jose´ A. Oteo * a Microbiology Department, Faculty of Sciences, Pontificia Universidad Javeriana, Bogota´, Colombia b Infectious Diseases Department, Center of Rickettsioses and Vector-borne Diseases, Hospital San Pedro-CIBIR, Logron˜o, Spain A R T I C L E I N F O S U M M A R Y Article history: Rickettsioses share common clinical manifestations, such as fever, malaise, exanthema, the presence or Received 28 February 2014 absence of an inoculation eschar, and lymphadenopathy. Some of these manifestations can be suggestive Received in revised form 23 April 2014 of certain species of Rickettsia infection. Nevertheless none of these manifestations are pathognomonic, Accepted 24 May 2014 and direct diagnostic methods to confirm the involved species are always required. A syndrome is a set of Corresponding Editor: Eskild Petersen, signs and symptoms that characterizes a disease with many etiologies or causes. This situation is Aarhus, Denmark applicable to rickettsioses, where different species can cause similar clinical presentations. We propose a syndromic classification for these diseases: exanthematic rickettsiosis syndrome with a low probability Keywords: of inoculation eschar and rickettsiosis syndrome with a probability of inoculation eschar and their Rickettsioses variants. In doing so, we take into account the clinical manifestations, the geographic origin, and the Syndrome possible vector involved, in order to provide a guide for physicians of the most probable etiological agent. -
Diagnosis of Spotted Fever Group Rickettsia Infections: the Asian Perspective Cambridge.Org/Hyg
Epidemiology and Infection Diagnosis of spotted fever group Rickettsia infections: the Asian perspective cambridge.org/hyg Matthew T. Robinson1,2, Jaruwan Satjanadumrong3, Tom Hughes4, John Stenos5 and Stuart D. Blacksell1,2,3 Review 1Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit (LOMWRU), Mahosot Hospital, Vientiane, Lao Cite this article: Robinson MT, People’s Democratic Republic; 2Nuffield Department of Clinical Medicine, Centre for Tropical Medicine and Global Satjanadumrong J, Hughes T, Stenos J, Health, University of Oxford, Churchill Hospital, Oxford, OX3 7FZ, UK; 3Mahidol-Oxford Tropical Medicine Research Blacksell SD (2019). Diagnosis of spotted fever Unit, Faculty of Tropical Medicine, Mahidol University, 420/6 Rajvithee Road, 10400 Bangkok, Thailand; 4EcoHealth group Rickettsia infections: the Asian 5 perspective. Epidemiology and Infection 147, Alliance, 460 West 34th Street, 17th floor, New York, NY, USA and Australian Rickettsial Reference Laboratory, e286, 1–9. https://doi.org/10.1017/ Barwon Health, Geelong VIC 3220, Australia S0950268819001390 Abstract Received: 2 May 2019 Revised: 27 June 2019 Spotted fever group rickettsiae (SFG) are a neglected group of bacteria, belonging to the genus Accepted: 3 July 2019 Rickettsia, that represent a large number of new and emerging infectious diseases with a world- wide distribution. The diseases are zoonotic and are transmitted by arthropod vectors, mainly Key words: Asia; diagnosis; rickettsial infection; SFG; ticks, fleas and mites, to hosts such as wild animals. Domesticated animals and humans are spotted fever rickettsia accidental hosts. In Asia, local people in endemic areas as well as travellers to these regions are at high risk of infection. In this review we compare SFG molecular and serological diagnostic Author for correspondence: methods and discuss their limitations. -
Tik-Borne Rickettsial Pathogens in Ticks and Small Mammals in Korea
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Sept. 2006, p. 5766–5776 Vol. 72, No. 9 0099-2240/06/$08.00ϩ0 doi:10.1128/AEM.00431-06 Copyright © 2006, American Society for Microbiology. All Rights Reserved. Tick-Borne Rickettsial Pathogens in Ticks and Small Mammals in Korea Chul-Min Kim,1 Ying-Hua Yi,1 Do-Hyeon Yu,1 Mi-Jin Lee,1 Mae-Rim Cho,1 Atul R. Desai,1 Smriti Shringi,1 Terry A. Klein,2 Heung-Chul Kim,3 Jin-Won Song,4 Luck-Ju Baek,4 Sung-Tae Chong,3 Monica L. O’Guinn,5 John S. Lee,5 In-Yong Lee,6 Jin-Ho Park,1 Janet Foley,7 and Joon-Seok Chae1* Bio-Safety Research Institute and College of Veterinary Medicine, Chonbuk National University, Jeonju 561-756, Korea1; Force Health Protection, 18th Medical Command, Unit 15821, Box 754, APO AP 96205-52812; 5th Medical Detachment, 168th Medical Battalion (AS), 18th Medical Command, Unit 15247, APO AP 96205-52473; Department of Microbiology, College of Medicine, Korea University, 126-1, 5 Ka, Anam-Dong, Sungbuk-Gu, Seoul 136-705, Korea4; Department of Virology, 1425 Porter Street, U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, Maryland 21702-50115; Department of Parasitology, College of Medicine, Yonsei University, Seoul 120-749, Korea6; and Center for Vector-Borne Diseases, School of Veterinary Medicine, University of California, Davis, California 956167 Received 21 February 2006/Accepted 16 June 2006 In order to investigate the prevalence of tick-borne infectious agents among ticks, ticks comprising five species from two genera (Hemaphysalis spp.