A Productive Year for Describing New Crayfish Species !
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Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Ecosystem Profile Madagascar and Indian
ECOSYSTEM PROFILE MADAGASCAR AND INDIAN OCEAN ISLANDS FINAL VERSION DECEMBER 2014 This version of the Ecosystem Profile, based on the draft approved by the Donor Council of CEPF was finalized in December 2014 to include clearer maps and correct minor errors in Chapter 12 and Annexes Page i Prepared by: Conservation International - Madagascar Under the supervision of: Pierre Carret (CEPF) With technical support from: Moore Center for Science and Oceans - Conservation International Missouri Botanical Garden And support from the Regional Advisory Committee Léon Rajaobelina, Conservation International - Madagascar Richard Hughes, WWF – Western Indian Ocean Edmond Roger, Université d‘Antananarivo, Département de Biologie et Ecologie Végétales Christopher Holmes, WCS – Wildlife Conservation Society Steve Goodman, Vahatra Will Turner, Moore Center for Science and Oceans, Conservation International Ali Mohamed Soilihi, Point focal du FEM, Comores Xavier Luc Duval, Point focal du FEM, Maurice Maurice Loustau-Lalanne, Point focal du FEM, Seychelles Edmée Ralalaharisoa, Point focal du FEM, Madagascar Vikash Tatayah, Mauritian Wildlife Foundation Nirmal Jivan Shah, Nature Seychelles Andry Ralamboson Andriamanga, Alliance Voahary Gasy Idaroussi Hamadi, CNDD- Comores Luc Gigord - Conservatoire botanique du Mascarin, Réunion Claude-Anne Gauthier, Muséum National d‘Histoire Naturelle, Paris Jean-Paul Gaudechoux, Commission de l‘Océan Indien Drafted by the Ecosystem Profiling Team: Pierre Carret (CEPF) Harison Rabarison, Nirhy Rabibisoa, Setra Andriamanaitra, -
Guide to Crustacea
46 Guide to Crustacea. Order 2.—Decapoda. (Table-cases Nos. 9-16.) The gills are arranged typically in three series—podo- branchiae, arthrobranchiae, and pleurobranchiae. Only in the aberrant genus Leucifer are the gills entirely absent. The first three pairs of thoracic limbs are more or less completely modified to act as jaws (maxillipeds), while the last five form the legs. This very extensive and varied Order includes all the larger and more familiar Crustacea, such as Crabs, Lobsters, Crayfish, FIG. 30. Penaeus caramote, from the side, about half natural size. [Table-case No. 9.] Prawns, and Shrimps. From their greater size and more general interest, it is both possible and desirable to exhibit a much larger series than in the other groups of Crustacea, and in Table-cases Nos. 9 to 16 will be found representatives of all the Tribes and of the more important families composing the Order. On the system of classification adopted here, these tribes are grouped under three Sub-orders :— Sub-order 1.—Macrura. „ 2.—Anomura. ,, 3.—Brachyura. Eucarida—Decapoda. 47 SUB-ORDER I.— MACRURA. (Table-cases Nos. 9-11.) The Macrura are generally distinguished by the large size of the abdomen, which is symmetrical and not folded under the body. The front, or rostrum, is not united with the " epistome." The sixth pair of abdominal appendages (uropods) are always present, generally broad and flattened, forming with the telson, a " tail-fan." The first Tribe of the Macrura, the PENAEIDEA, consists of prawn-like animals having the first three pairs of legs usually chelate or pincer-like, and not differing greatly in size. -
Phylogeny and Biogeography of the Freshwater Crayfish Euastacus
Molecular Phylogenetics and Evolution 37 (2005) 249–263 www.elsevier.com/locate/ympev Phylogeny and biogeography of the freshwater crayWsh Euastacus (Decapoda: Parastacidae) based on nuclear and mitochondrial DNA Heather C. Shull a, Marcos Pérez-Losada a, David Blair b, Kim Sewell b,c, Elizabeth A. Sinclair a, Susan Lawler d, Mark Ponniah e, Keith A. Crandall a,¤ a Department of Integrative Biology, Brigham Young University, Provo, UT 84602-5181, USA b School of Tropical Biology, James Cook University, Townsville, Qld, Australia c Centre for Microscopy and Microanalysis, University of Queensland, Qld 4072, Australia d Department of Environmental Management and Ecology, La Trobe University, Wodonga, Vic. 3689, Australia e Australian School of Environmental Studies, GriYth University, Nathan, Qld 4111, Australia Received 17 November 2004; revised 7 April 2005; accepted 29 April 2005 Available online 18 July 2005 Abstract Euastacus crayWsh are endemic to freshwater ecosystems of the eastern coast of Australia. While recent evolutionary studies have focused on a few of these species, here we provide a comprehensive phylogenetic estimate of relationships among the species within the genus. We sequenced three mitochondrial gene regions (COI, 16S, and 12S) and one nuclear region (28S) from 40 species of the genus Euastacus, as well as one undescribed species. Using these data, we estimated the phylogenetic relationships within the genus using maximum-likelihood, parsimony, and Bayesian Markov Chain Monte Carlo analyses. Using Bayes factors to test diVerent model hypotheses, we found that the best phylogeny supports monophyletic groupings of all but two recognized species and suggests a widespread ancestor that diverged by vicariance. -
Synopsis of Freshwater Crayfish Diseases and Commensal Organisms Brett .F Edgerton James Cook University, [email protected]
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications from the Harold W. Manter Parasitology, Harold W. Manter Laboratory of Laboratory of Parasitology 3-2002 Synopsis of Freshwater Crayfish Diseases and Commensal Organisms Brett .F Edgerton James Cook University, [email protected] Louis H. Evans Curtin University of Technology Frances J. Stephens Curtin University of Technology Robin M. Overstreet Gulf Coast Research Laboratory, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/parasitologyfacpubs Part of the Aquaculture and Fisheries Commons, and the Parasitology Commons Edgerton, Brett .;F Evans, Louis H.; Stephens, Frances J.; and Overstreet, Robin M., "Synopsis of Freshwater Crayfish Diseases and Commensal Organisms" (2002). Faculty Publications from the Harold W. Manter Laboratory of Parasitology. 884. https://digitalcommons.unl.edu/parasitologyfacpubs/884 This Article is brought to you for free and open access by the Parasitology, Harold W. Manter Laboratory of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications from the Harold W. Manter Laboratory of Parasitology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Published in Aquaculture 206:1–2 (March 2002), pp. 57–135; doi: 10.1016/S0044-8486(01)00865-1 Copyright © 2002 Elsevier Science. Creative Commons Attribution Non-Commercial No Deriva- tives License. Accepted October 18, 2001; published online November 30, 2001. Synopsis of Freshwater Crayfish Diseases and Commensal Organisms Brett F. Edgerton,1 Louis H. Evans,2 Frances J. Stephens,2 and Robin M. Overstreet3 1. Department of Microbiology and Immunology, James Cook University, Townsville, QLD 4810, Australia 2. -
A Revision of the Tasmanian Freshwater Crayfish Genus Astacopsis Huxley (Decapoda: Parastacidae)
Papers and Proceedings of the Royal Society of Tasmania, Volume 126, 1992 91 A REVISION OF THE TASMANIAN FRESHWATER CRAYFISH GENUS ASTACOPSIS HUXLEY (DECAPODA: PARASTACIDAE). by Premek Hamr (with three text-figures) HAMR, P., 1992 (31 :x): A revision of the Tasmanian freshwater crayfish genus Astacopsis Huxley (Dccapoda: ·Parastacidae). Pap. Proc. R. Soc. Tasm. 126: 91-94. ISSN 0080-4703. 28 Undercliffe Ave, Hamilton, Ontario, L8P 3HI, Canada: formerly Department of Zoology, University of Tasmania. During a broad study of the biology of the freshwater in rhe Tasmanian genus fWO distinct forms of Astacopsis franklinii were recognised. These "forms" were found to diffcr in terms of their general morphology and distribution. As a result, the taxonomy of Astacopsis has been revised to re-establish the three species originally described by Ellen Clark. Astacopsis franklinii Gray has been divided into fWO separate species, the eastern Astacopsis franklinti and the western Astacopsis tricorn is, while the status ofArtacopsis gouldi remains unaltered. Key Words: Astacopsis, Tasmania, distribution, taxonomy. INTRODUCTION to vary greatly in size and spininess. In their re-examination of the various morphological characters, Swain et al. (1982) The members of the genus Astacopsis, which include the found that the variation in spininess and size had a world's largest freshwater crayfish (and therefore invertebrate) geographical basis. It will be shown in this study that this species, are associated with riverine and lacustrine habitats variation is, in fact, at least partly due to the occurrence of throughout Tasmania (Swain et al. 1982). Taxonomically two distinct forms within A. franklinii, and it is further and ecologically their closest relatives are the crayfishes of the proposed that these two forms should be treated as two genera Euastacus and Astacoides (Hobbs 1987,1988, Riek separate species. -
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March 1941 �!Dr. NAT.. Mus. VrcT., 12, 1941. https://doi.org/10.24199/j.mmv.1941.12.01 REVISION OF THE GENUS EUAS11AGUS (CRAY FISHES, FAMILY PARASTACIDAE), WITH NOTES ON THE DISTRIBUTION OF CERTAIN SPECIES.1 By Ellen Clark Plates I-IX, Fig. 1. INTRODUCTION. In a previous paper (2) an attempt was made to clear up the synonymy of the Australian Parastacidae, but it was not possible to make a complete survey of the group as material from many districts ,vas not available. Since that time, how ever, much material from localities not previously repre sented bas been collected or received for identification. Special attention ,vas given to obtaining specimens from New South ,vales, the type locality of most species of the genus. With the material now available it has been possible to make a complete reYision of the genus Euastac1ts; this revision has resulted in several alterations in nomenclature, the reasons for which are explained below. The full synonymy of each species is included with its description, and the distribution (as for as is known) is indicated. Since difficulties arose in finding suitable maps of Victoria to illustrate the distribution, two special maps (Plates VIII and IX) were compiled from data on plans prepared by the State Rivers and "\VaterSupply Commission and maps issued by the Gcologieal Survey. N mIENCLATURE. Genus EUASTACUS Clark. Euastacus Clark, Mem. Nat. l\fos. Viet., x, 1936, p. 10. Carapace spinous or tuberculate; cervical groove deeply impressed, rounded. Rostral carinae spinous or tuberculate. Abdomen spinous or tuberculate; first segment with lateral lobes large and rounded. -
THE STATUS and DISTRIBUTION of Freshwater Biodiversity in Madagascar and the Indian Ocean Islands Hotspot
THE THE STATUs aNd dISTRIBUtION OF STAT U Freshwater biodIversIty in MadagasCar s a N aNd the INdIaN OCeaN IslaNds hOtspOt d d I STR Edited by Laura Máiz-Tomé, Catherine Sayer and William Darwall IUCN Freshwater Biodiversity Unit, Global Species Programme IBU t ION OF F OF ION RESHWATER N ds a BIO I N d I ar ar VERS d C N I TY IN IN sla Madagas I N C ar a ar N ea d the I the d d the I the d C N N d Madagas a O I a N O C ea N I sla N IUCN h ds Rue Mauverney 28 CH-1196 Gland O Switzerland tsp Tel: + 41 22 999 0000 Fax: + 41 22 999 0015 O www.iucn.org/redlist t the IUCN red list of threatened speciestM www.iucnredlist.org THE STATUS AND DISTRIBUTION OF freshwater biodiversity in Madagascar and the Indian Ocean islands hotspot Edited by Laura Máiz-Tomé, Catherine Sayer and William Darwall IUCN Freshwater Biodiversity Unit, Global Species Programme The designation of geographical entities in this book, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of IUCN concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. The views expressed in this publication do not necessarily reflect those of IUCN, or other participating organisations. This publication has been made possible by funding from The Critical Ecosystem Partnership Fund. Published by: IUCN Cambridge, UK in collaboration with IUCN Gland, Switzerland Copyright: © 2018 IUCN, International Union for Conservation of Nature and Natural Resources Reproduction of this publication for educational or other non-commercial purposes is authorised without prior written permission from the copyright holder provided the source is fully acknowledged. -
Synopsis of the Families and Genera of Crayfishes (Crustacea: Decapoda)
Synopsis of the Families and Genera of Crayfishes (Crustacea: Decapoda) HORTON H, HOBBS, JR. m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 164 SERIAL PUBLICATIONS OF THE SMITHSONIAN INSTITUTION The emphasis upon publications as a means of diffusing knowledge was expressed by the first Secretary of the Smithsonian Institution. In his formal plan for the Insti- tution, Joseph Henry articulated a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This keynote of basic research has been adhered to over the years in the issuance of thousands of titles in serial publications under the Smithsonian imprint, com- mencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Annals of Flight Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology Smithsonian Studies in History and Technology In these series, the Institution publishes original articles and monographs dealing with the research and collections of its several museums and offices and of professional colleagues at other institutions of learning. These papers report newly acquired facts, synoptic interpretations of data, or original theory in specialized fields. These pub- lications are distributed by mailing lists to libraries, laboratories, and other interested institutions and specialists throughout the world. Individual copies may be obtained from the Smithsonian Institution Press as long as stocks are available. S. DILLON RIPLEY Secretary Smithsonian Institution SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 164 Synopsis of the Families and Genera of Crayfishes (Crustacea: Decapoda) Horton H. -
Phylogeography and Population Genetics of a Headwater-Stream Adapted Crayfish
Phylogeography and population genetics of a headwater-stream adapted crayfish, Cambarus pristinus (Decapoda: Cambaridae), from the Cumberland Plateau in Tennessee A thesis Presented to The College of Graduate Studies Austin Peay State University In Partial Fulfillment Of the Requirements for the Degree Master of Science in Biology Brooke A. Grubb December, 2019 Statement of Permission to Use In presenting this thesis in partial fulfillment of the requirements for the Master of Science in Biology at Austin Peay State University, I agree that the library shall make it available to borrowers under the rules of the library. Brief quotations from this field study are allowable without special permission, provided that accurate acknowledgement of the source is made. Permissions for extensive quotations or reproduction of this field study may be granted by my major professor, or in his/her absence, by the Head of the Interlibrary Services when, in the opinion of either, the proposed use of the material is for scholarly purposes. Any copying or use of the material in this thesis for financial gain shall not be allowed without my written permission. Brooke A. Grubb Date: _____________________________ ___________________ For Rose Mier She introduced me to the wonderful world of crayfish. ACKNOWLEDGMENTS First, I want to thank Dr. Rebecca Blanton Johansen for all her help, guidance, and feedback during my master’s work. Without Rebecca focusing my enthusiasm, I likely would have followed every ‘shiny object’ and my master’s work would’ve been a much longer process. I also want to thank her for all the invaluable advice related to pursuing a PhD and being available to answer any and all questions I might have had and thank her for allowing me to pursue my Ph.D. -
Korean Red List of Threatened Species Korean Red List Second Edition of Threatened Species Second Edition Korean Red List of Threatened Species Second Edition
Korean Red List Government Publications Registration Number : 11-1480592-000718-01 of Threatened Species Korean Red List of Threatened Species Korean Red List Second Edition of Threatened Species Second Edition Korean Red List of Threatened Species Second Edition 2014 NIBR National Institute of Biological Resources Publisher : National Institute of Biological Resources Editor in President : Sang-Bae Kim Edited by : Min-Hwan Suh, Byoung-Yoon Lee, Seung Tae Kim, Chan-Ho Park, Hyun-Kyoung Oh, Hee-Young Kim, Joon-Ho Lee, Sue Yeon Lee Copyright @ National Institute of Biological Resources, 2014. All rights reserved, First published August 2014 Printed by Jisungsa Government Publications Registration Number : 11-1480592-000718-01 ISBN Number : 9788968111037 93400 Korean Red List of Threatened Species Second Edition 2014 Regional Red List Committee in Korea Co-chair of the Committee Dr. Suh, Young Bae, Seoul National University Dr. Kim, Yong Jin, National Institute of Biological Resources Members of the Committee Dr. Bae, Yeon Jae, Korea University Dr. Bang, In-Chul, Soonchunhyang University Dr. Chae, Byung Soo, National Park Research Institute Dr. Cho, Sam-Rae, Kongju National University Dr. Cho, Young Bok, National History Museum of Hannam University Dr. Choi, Kee-Ryong, University of Ulsan Dr. Choi, Kwang Sik, Jeju National University Dr. Choi, Sei-Woong, Mokpo National University Dr. Choi, Young Gun, Yeongwol Cave Eco-Museum Ms. Chung, Sun Hwa, Ministry of Environment Dr. Hahn, Sang-Hun, National Institute of Biological Resourses Dr. Han, Ho-Yeon, Yonsei University Dr. Kim, Hyung Seop, Gangneung-Wonju National University Dr. Kim, Jong-Bum, Korea-PacificAmphibians-Reptiles Institute Dr. Kim, Seung-Tae, Seoul National University Dr. -
Freshwater Crayfish of the Genus Euastacus Clark (Decapoda: Parastacidae) from New South Wales, with a Key to All Species of the Genus
Records of the Australian Museum (1997) Supplement 23. ISBN 0 7310 9726 2 Freshwater Crayfish of the Genus Euastacus Clark (Decapoda: Parastacidae) from New South Wales, With a Key to all Species of the Genus GARY 1. MORGAN Botany Bay National Park, Kurnell NSW 2231, Australia ABSTRACT. Twenty-four species of Euastacus are recorded from New South Wales. Nine new species are described: E. clarkae, E. dangadi, E. dharawalus, E. gamilaroi, E. gumar, E. guwinus, E. rieki, E. spinichelatus and E. yanga. The following species are synonymised: E. alienus with E. reductus, E. aquilus with E. neohirsutus, E. clydensis with E. spini[er, E. keirensis with E. hirsutus, E. nobilis with E. australasiensis and E. spinosus with E. spinifer. This study brings the number of recognised species in Euastacus to 41. A key to all species of the genus is provided. Relationships between taxa are discussed and comments on habitat are included. MORGAN, GARY J., 1997. Freshwater crayfish of the genus Euastacus Clark (Decapoda: Parastacidae) from New South Wales, with a key to all species of the genus. Records of the Australian Musuem, Supplement 23: 1-110. Contents Introduction.. ...... .... ....... .... ... .... ... ... ... ... ... .... ..... ... .... .... ..... ..... ... .... ... ....... ... ... ... ... .... ..... ........ ..... 2 Key to species of Euastacus.... ...... ... ... ......... ... ......... .......... ...... ........... ... ..... .... ..... ...... ........ 11 Euastacus armatus von Martens, 1866.. ....... .... ..... ...... .... ............. ... ... ..