Synopsis of Freshwater Crayfish Diseases and Commensal Organisms Brett .F Edgerton James Cook University, [email protected]
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Settlement-Driven, Multiscale Demographic Patterns of Large Benthic Decapods in the Gulf of Maine
Journal of Experimental Marine Biology and Ecology, L 241 (1999) 107±136 Settlement-driven, multiscale demographic patterns of large benthic decapods in the Gulf of Maine Alvaro T. Palmaa,* , Robert S. Steneck b , Carl J. Wilson b aDepartamento EcologõaÂÂ, Ponti®cia Universidad Catolica de Chile, Alameda 340, Casilla 114-D, Santiago, Chile bIra C. Darling Marine Center, School of Marine Sciences, University of Maine, Walpole, ME 04573, USA Received 3 November 1998; received in revised form 30 April 1999; accepted 5 May 1999 Abstract Three decapod species in the Gulf of Maine (American lobster Homarus americanus Milne Edwards, 1837, rock crab Cancer irroratus Say, 1817, and Jonah crab Cancer borealis Stimpson, 1859) were investigated to determine how their patterns of settlement and post-settlement abundance varied at different spatial and temporal scales. Spatial scales ranged from centimeters to hundreds of kilometers. Abundances of newly settled and older (sum of several cohorts) individuals were measured at different substrata, depths, sites within and among widely spaced regions, and along estuarine gradients. Temporal scales ranged from weekly censuses of new settlers within a season to inter-annual comparisons of settlement strengths. Over the scales considered here, only lobsters and rock crabs were consistently abundant in their early post- settlement stages. Compared to rock crabs, lobsters settled at lower densities but in speci®c habitats and over a narrower range of conditions. The abundance and distribution of older individuals of both species were, however, similar at all scales. This is consistent with previous observations that, by virtue of high fecundity, rock crabs have high rates of settlement, but do not discriminate among habitats, and suffer high levels of post-settlement mortality relative to lobsters. -
DNA-Based Methods for Freshwater Biodiversity Conservation
DNA-based methods for freshwater biodiversity conservation - Phylogeographic analysis of noble crayfish (Astacus astacus) and new insights into the distribution of crayfish plague DISSERTATION zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften Fachbereich 7: Natur- und Umweltwissenschaften der Universität Koblenz-Landau Campus Landau vorgelegt am 16. Januar 2013 von Anne Schrimpf geboren am 21. September 1984 in Frankfurt am Main Referent: Prof. Dr. Ralf Schulz Koreferent: Prof. Dr. Klaus Schwenk - This thesis is dedicated to my grandparents - Content CONTENT CONTENT ............................................................................................................... 5 ABSTRACT ............................................................................................................ 8 ZUSAMMENFASSUNG ........................................................................................ 10 ABBEREVIATIONS .............................................................................................. 13 GENERAL INTRODUCTION ................................................................................ 15 Conservation of biological diversity ........................................................................ 15 The freshwater crayfish ............................................................................................ 17 General ............................................................................................................... 17 The noble crayfish (Astacus astacus) ................................................................ -
Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
<I>Cancer Irroratus</I>
BULLETIN OF MARINE SCIENCE, 36(3): 454-466,1985 RHYTHMICITY UNDER CONSTANT CONDITIONS IN THE ROCK CRAB, CANCER IRRORATUS Steve Rebach ABSTRACT The existence of activity rhythms in migratory populations of the rock crab, Cancer ir- roratus, which spend most of the year in deep water, was investigated. Mature individuals from the Mid-Atlantic Bight were tested under laboratory conditions of constant light (LL) and constant dark (DD) after an initial ambient photoperiod was presented. Activity levels were simultaneously monitored for 20 crabs maintained in separate compartments, using an infrared beam-break system. Activity was analyzed using an Enright periodogram. Activity under LL was at a relatively low level and with no rhythmic periodicity exhibited. In DD, activity was concentrated at approximately 25-h intervals, approximating a tidal period. Under ambient (natural photoperiod) conditions, a 24-h rhythm was present with activity greatest during the scotophase and with peaks at dawn and dusk. Possible advantages to the presence of a tidal rhythmicity in a deep water species are discussed and include temporal partitioning of the environment, a timekeeping mechanism for the initiation of migration, and an evolutionary or ecological remnant from shallow water populations. The common rock crab, Cancer irroratus, is found from Labrador to South Carolina (Haefner, 1976) and is most abundant from Maine to North Carolina. Rock crabs inhabit cold water (50-15°C, Haefner, 1976) and in the mid-Atlantic region they live at depths of 10-700 m (depending on age and season), with highest densities between 40 and 60 m (15-30 km offshore) (Musick and McEachran, 1972; Haefner, 1976). -
Atic Fa and T Ralia's Sout
Aquatic fauna refuges in Marrggaret River and the Cape to Cape region of Australia’s Mediterranean-climatic Southwestern Province Mark G. Allen1,2, Stephen J. Beatty1 and David L. Morgan1* 1. Freshwater Fish Group & Fish Health Unit, Centre for Fish & Fisheries Research, School of Veterinary and Life Sciences, Murdoch University, South St, Murdoch 6150, Western Austrralia 2. Current address: Department of Aquattic Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Perth, Western Australia, 6986, Australia * correspondence to [email protected] SUUMMARY Margaret River and the Cape to Cape region in the extreme south-western tip of Australia are located between Capee Naturaliste in the north and Cape Leeuwin in the south and encompass all intervening catchments that drain westward to the In- dian Ocean. The region has a Mediteerranean climate and houses 13 native, obligate freshwater macrofauna species (i.e. fishes, decapod crustaceans and a bivalve mol- lusc), four of which are listed as threatened under State and/or Commonwealth leg- islation. The most imperiled species are the Margaret River Burrowing Crayfish (Engaewa pseudoreducta) and Hairy Marron (Cherax tenuimanus), both of which are endemic to the Margaret River catchment and listed as critically endangered (also by the IUCN), and Balston’s Pygmy Perch (Nannatherina balstoni) which is vulner- able. The region also houses several fishes that may represent neew, endemic taxa based on preliminary molecular evidence. Freshwater ecosystems in the region face numerous threats including global climate change, a growing huuman population, introduced species, destructive land uses, riparian degradation, waater abstraction, declinning environmental flows, instream barriers, and fire. -
Molecular Identification of Fungi
Molecular Identification of Fungi Youssuf Gherbawy l Kerstin Voigt Editors Molecular Identification of Fungi Editors Prof. Dr. Youssuf Gherbawy Dr. Kerstin Voigt South Valley University University of Jena Faculty of Science School of Biology and Pharmacy Department of Botany Institute of Microbiology 83523 Qena, Egypt Neugasse 25 [email protected] 07743 Jena, Germany [email protected] ISBN 978-3-642-05041-1 e-ISBN 978-3-642-05042-8 DOI 10.1007/978-3-642-05042-8 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2009938949 # Springer-Verlag Berlin Heidelberg 2010 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: WMXDesign GmbH, Heidelberg, Germany, kindly supported by ‘leopardy.com’ Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Dedicated to Prof. Lajos Ferenczy (1930–2004) microbiologist, mycologist and member of the Hungarian Academy of Sciences, one of the most outstanding Hungarian biologists of the twentieth century Preface Fungi comprise a vast variety of microorganisms and are numerically among the most abundant eukaryotes on Earth’s biosphere. -
Ecological Effects of Predator Information Mediated by Prey Behavior
ECOLOGICAL EFFECTS OF PREDATOR INFORMATION MEDIATED BY PREY BEHAVIOR Tyler C. Wood A Dissertation Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY May 2020 Committee: Paul Moore, Advisor Robert Green Graduate Faculty Representative Shannon Pelini Andrew Turner Daniel Wiegmann ii ABSTRACT Paul Moore, Advisor The interactions between predators and their prey are complex and drive much of what we know about the dynamics of ecological communities. When prey animals are exposed to threatening stimuli from a predator, they respond by altering their morphology, physiology, or behavior to defend themselves or avoid encountering the predator. The non-consumptive effects of predators (NCEs) are costly for prey in terms of energy use and lost opportunities to access resources. Often, the antipredator behaviors of prey impact their foraging behavior which can influence other species in the community; a process known as a behaviorally mediated trophic cascade (BMTC). In this dissertation, predator odor cues were manipulated to explore how prey use predator information to assess threats in their environment and make decisions about resource use. The three studies were based on a tri-trophic interaction involving predatory fish, crayfish as prey, and aquatic plants as the prey’s food. Predator odors were manipulated while the foraging behavior, shelter use, and activity of prey were monitored. The abundances of aquatic plants were also measured to quantify the influence of altered crayfish foraging behavior on plant communities. The first experiment tested the influence of predator odor presence or absence on crayfish behavior. -
Dunsborough Burrowing Crayfish (Engaewa Reducta), Margaret River
Dunsborough Burrowing Crayfish (Engaewa reducta), Margaret River Burrowing Crayfish (Engaewa pseudoreducta) and Walpole Burrowing Crayfish (Engaewa walpolea) Recovery Plan 2007 –2016 Wildlife Management Program No. 41 WESTERN AUSTRALIAN WILDLIFE MANAGEMENT PROGRAM NO. 41 Dunsborough Burrowing Crayfish (Engaewa reducta), Margaret River Burrowing Crayfish (Engaewa pseudoreducta) and Walpole Burrowing Crayfish (Engaewa walpolea) Recovery Plan 2007-2016 23 January 2008 Species and Communities Branch Department of Conservation and Land Management Locked Bag 104, Bentley Delivery Centre WA 6983 Above: Dunsborough Burrowing Crayfish (Engaewa reducta) Photo:Kelly Rogerson Cover: Walpole Burrowing Crayfish (Engaewa walpolea) Photo:Kelly Rogerson i. FOREWORD Recovery Plans are developed within the framework laid down in Department of Conservation and Land Management (CALM) Policy Statements No 44 and 50. Recovery Plans outline the recovery actions that are required to address those threatening processes most affecting the ongoing survival of threatened taxa or ecological communities, and begin the recovery process. Recovery Plans delineate, justify and schedule management actions necessary to support the recovery of threatened species and ecological communities. The attainment of objectives and the provision of funds necessary to implement actions are subject to budgetary and other constraints affecting the parties involved, as well as the need to address other priorities. Recovery Plans do not necessarily represent the views or the official position of individuals or organisations represented on the Recovery Team. This Recovery Plan was approved by the Department of Environment and Conservation, Western Australia. Approved Recovery Plans are subject to modification as dictated by new findings, changes in status of the taxon or ecological community and the completion of recovery actions. -
A Toolkit for Developing a Catchment-Scale Conservation
A toolkit for developing catchment-scale conservation strategy for White-clawed crayfish A toolkit for developing catchment-scale conservation strategy for White- clawed crayfish Version 2 October 2011 Reference this document as: Peay S., Kindemba V., Attwood F. and Christmas M. (2011). A toolkit for developing catchment-scale conservation strategy for White-clawed crayfish. Version 1 October 2011 Buglife – The Invertebrate Conservation Trust, Peterborough. ISBN 978-1-908657-00-8 Available to download from the crayfish website www.crayfish.org.uk Document history Consultation draft issued January 2011 Final Version 1 issued October 2011 White-clawed crayfish Signal crayfish Acknowledgements: This guidance has been produced with funding from the Environment Agency. The project has been developed following a crayfish conservation workshop held by the Environment Agency in July 2009 at Malham Tarn Field Centre, North Yorkshire. Assistance with graphics in the guidance was provided by Paul Bryden. Photographs are by Stephanie Peay. Thanks go to all those who have kindly provided comments on earlier drafts, including Margaret Palmer and Suzannah Dangerfield, Buglife; Pete Sibley, Environment Agency; Julia Stansfield, Environment Agency; Mike Howe, Countryside Council for Wales, David Heaver, Natural England, Joanne Backshall, Eden Rivers Trust; Abigail Stancliffe-Vaughn, University of East Anglia, Paul Bradley, PBA Applied Ecology. Contents 1. Introduction 1 1.1 How to use this guidance on conservation strategy for White-clawed crayfish ......................... 1 2. Considerations before starting a catchment strategy 3 2.1 Policy and regulations in the countries of the UK ...................................................................... 3 2.2 Status of crayfish in the River Basin Districts ............................................................................. 4 2.3 Policy and planning at country to catchment scale ................................................................... -
Phylogeny and Biogeography of the Freshwater Crayfish Euastacus
Molecular Phylogenetics and Evolution 37 (2005) 249–263 www.elsevier.com/locate/ympev Phylogeny and biogeography of the freshwater crayWsh Euastacus (Decapoda: Parastacidae) based on nuclear and mitochondrial DNA Heather C. Shull a, Marcos Pérez-Losada a, David Blair b, Kim Sewell b,c, Elizabeth A. Sinclair a, Susan Lawler d, Mark Ponniah e, Keith A. Crandall a,¤ a Department of Integrative Biology, Brigham Young University, Provo, UT 84602-5181, USA b School of Tropical Biology, James Cook University, Townsville, Qld, Australia c Centre for Microscopy and Microanalysis, University of Queensland, Qld 4072, Australia d Department of Environmental Management and Ecology, La Trobe University, Wodonga, Vic. 3689, Australia e Australian School of Environmental Studies, GriYth University, Nathan, Qld 4111, Australia Received 17 November 2004; revised 7 April 2005; accepted 29 April 2005 Available online 18 July 2005 Abstract Euastacus crayWsh are endemic to freshwater ecosystems of the eastern coast of Australia. While recent evolutionary studies have focused on a few of these species, here we provide a comprehensive phylogenetic estimate of relationships among the species within the genus. We sequenced three mitochondrial gene regions (COI, 16S, and 12S) and one nuclear region (28S) from 40 species of the genus Euastacus, as well as one undescribed species. Using these data, we estimated the phylogenetic relationships within the genus using maximum-likelihood, parsimony, and Bayesian Markov Chain Monte Carlo analyses. Using Bayes factors to test diVerent model hypotheses, we found that the best phylogeny supports monophyletic groupings of all but two recognized species and suggests a widespread ancestor that diverged by vicariance. -
Differentiation and Pathogenicity Within the Saprolegniaceae
Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 680 _____________________________ _____________________________ Differentiation and Pathogenicity within the Saprolegniaceae Studies on Physiology and Gene Expression Patterns in Saprolegnia parasitica and Aphanomyces astaci BY GUNNAR ANDERSSON ACTA UNIVERSITATIS UPSALIENSIS UPPSALA 2001 Dissertation for the Degree of Doctor of Philosophy in Physiological Mycology presented at Uppsala University in 2002 Abstract Andersson, M. G. 2001. Differentiation and Pathogenicity within the Saprolegniaceae. Studies on Physiology and Gene Expression Patterns in Saprolegnia parasitica and Aphanomyces astaci. Acta Universitatis Upsaliensis. Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 680, 41 pp. Uppsala. ISBN 91-554-5203-5. Saprolegnia parasitica and Aphanomyces astaci are parasitic water moulds belonging to the Oomycetes. Despite their importance as parasites they are very little studied at the molecular level and the work described in this thesis was aimed at increasing the molecular knowledge of these organisms by cloning and characterising genes of potential importance for reproduction and pathogenicity. Stage-specific transcripts from Saprolegnia parasitica were isolated by differential display RT-PCR. One of the markers, puf1 encodes a putative mRNA binding protein which may be involved in post-transcriptional regulation of gene expression. S. parasitica puf1 is expressed exclusively in spore cysts that have not been determined for germination or repeated zoospore emergence indicating that the cyst stage has two phases, of about equal duration, which are physiologically and transcriptionally distinct. A similar expression pattern is observed in Aphanomyces spp. with different regulation of spore development and in the transcript is detected in both primary and secondary cysts. -
Wellington National Park, Westralia Conservation Park and Wellington Discovery Forest
WELLINGTON NATIONAL PARK, WESTRALIA CONSERVATION PARK AND WELLINGTON DISCOVERY FOREST Management Plan 2008 Department of Environment and Conservation Conservation Commission of Western Australia VISION Over the life of the plan, a balance will exist between the conservation of the planning areas’ natural values and the public demand for recreation and water supply. The area will make an important contribution to reservation of the Jarrah Forest, where natural values, such as granite outcrops, mature growth forest, ecosystems of the Collie River, and our knowledge of them, will be maintained and enhanced for future generations. Visitors to the area will enjoy a range of sustainable recreation opportunities in a variety of forest settings, and provide a benefit to the regional economy. The community will regard the area as a natural asset and will have a greater understanding of its values, and support for their management, through the Wellington Discovery Forest and other education and interpretive facilities. The ancient landscape of the Collie River valley will be recognised as a forest environment of great visual aesthetic appeal, and for its rich Aboriginal heritage, which will be kept alive through the active and ongoing involvement of local Aboriginal people. ii PREFACE The Department of Environment and Conservation (the Department) manages reserves vested in the Conservation Commission of Western Australia (Conservation Commission) and prepares management plans on their behalf. The Conservation Commission issues draft management plans for public comment and provides proposed (final) management plans for approval by the Minister for the Environment. The Conservation and Land Management Act 1984 (the ‘CALM Act’) specifies that management plans must contain: a) a statement of policies and guidelines proposed to be followed; and b) a summary of operations proposed to be undertaken.