Authors: Pallavi Subhraveti Peter D Karp Ingrid Keseler An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Anamika Kothari Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. Gcf_000772065Cyc: Vibrio coralliilyticus RE98 Cellular Overview Connections between pathways are omitted for legibility. Ron Caspi an amino an amino an amino a dicarboxylate a dicarboxylate a dicarboxylate a hexose 6- a maltodextrin acid acid acid an amino an amino phosphate an amino an amino an amino maltose maltose an amino an amino an amino an amino an amino an amino an amino an amino an amino phosphate phosphate an amino an amino an amino an amino an amino an amino thiamine uracil N-acetyl-D- sn-glycerol sn-glycerol acid acid phosphate acid acid acid melibiose melibiose D-mannitol acid acid acid acid acid acid acid acid acid phosphate acid acid acid acid acid acid (S)-lactate diphosphate muramate 3-phosphate 3-phosphate predicted predicted predicted predicted predicted ABC ABC ABC ABC ABC RS13590 RS19660 RS02415 RS11050 RS03140 RS13170 RS01670 RS03965 RS08090 RS17660 RS23220 RS02445 RS13225 RS28895 RS16315 transporter transporter RS05215 RS09905 RS22355 RS22380 transporter RS22255 RS18830 RS01855 RS02020 RS08505 RS18315 RS18450 RS05010 RS18640 RS00075 RS05300 RS02990 RS24120 RS19310 transporter transporter of an of an of an of maltose/a of maltose amino acid amino acid amino acid maltodextrin uracil N-acetyl-D- D-mannitol an amino an amino phosphate thiamine melibiose melibiose sn-glycerol sn-glycerol an amino an amino an amino an amino an amino an amino an amino an amino an amino an amino an amino an amino an amino an amino an amino an amino an amino an amino muramate 6- 1-phosphate acid acid phosphate phosphate phosphate (S)-lactate diphosphate 3-phosphate 3-phosphate acid acid acid acid acid acid acid acid acid a hexose 6- acid acid acid acid acid acid acid acid acid phosphate a maltodextrin maltose an amino an amino phosphate an amino a dicarboxylate a dicarboxylate a dicarboxylate maltose acid acid acid

Cofactor, Carrier, and Vitamin Biosynthesis Aldehyde Degradation molybdopterin N 6 -dimethylallyladenosine 37 an [HPr]- phosphoenol a carboxy- a [ThiI sulfur- an N-terminal- phosphoenol an N-terminal- (S)-1-pyrroline- a [protein]-L- a [protein]-L- a protein-L- biotin biosynthesis I Fatty Acid and Lipid Biosynthesis purine nucleotides degradation II (aerobic) Nucleoside and Nucleotide Degradation a sulfurated a purine hydrogen cyanide a sulfurated tungstate a [glutamine- 5 superpathway of adenosylcobalamin salvage from cobinamide I pyridoxal 5'-phosphate biosynthesis I base-degraded Fermentation mixed acid fermentation superpathway of purine deoxyribonucleosides degradation methylglyoxal degradation I adenosylcobinamide adenine adenylated- cys carrier protein]- cys L-methionyl-L- L-methionyl-L- glutamate-O methionine methionine- trp [2Fe-2S] iron-sulfur superpathway of menaquinol-8 biosynthesis I superpathway of demethylmenaquinol-8 biosynthesis I superpathway of tetrahydrofolate biosynthesis heme b biosynthesis II ubiquinol-8 biosynthesis (prokaryotic) adenosylcobalamin thiamine diphosphate salvage II adeninyl adenosylcobamide superpathway of pyrimidine [sulfur carrier] in tRNA ribonucleoside L-histidine pyruvate [sulfur carrier] ATP synthetase]- dGDP pyruvate 5-carboxylate ATP thiamine salvage dinucleotide [ThiS sulfur- L-cysteine cysteinyl-[protein] alanyl-[protein] 1-pyrroline-5- -methyl-ester biotin peptide- (R)-S-oxide cluster biosynthesis (oxygen-independent) salvage from cobalamin biosynthesis from deoxyribonucleosides degradation 5'-triphosphate L-tyrosine peptide- D-erythrose 4-amino-2-methyl-5- palmitate biosynthesis II methylglyoxal carrier protein] carboxylate methionine a malonyl-[acp] chorismate chorismate all-trans-octaprenyl cob(II)inamide adenosylcobinamide-GDP formylaminopyrimidine (bacteria and plant cytoplasm) oleate biosynthesis (5Z)-dodecenoate phosphatidylserine and phosphoenolpyruvate AMP 2'-deoxycytidine phosphoenolpyruvate- (S)-S-oxide methionine uroporphyrinogen-III 4-hydroxybenzoate cob(I)alamin 4-phosphate pyrimidinemethanol 2'-deoxyguanosine lactoylglutathione tRNA (N6-isopentenyl rhodanese bifunctional cysteine type I methionyl type I methionyl dehydrogenase: cysteine malonyl-[acyl- L-cysteine desulfurase GTP diphosphate IV (anaerobic) biosynthesis I phosphatidylethanolamine bifunctional protein chemotaxis (R)-S-oxide domain- molybdopterin- desulfurase bifunctional [glutamate- aminopeptidase: pyruvate aminopeptidase: IX92_RS23780 bifunctional biotin- reductase: desulfhydrase: carrier protein] O- isochorismate isochorismate uroporphyrinogen cob(I)yrinic acid erythrose-4- bifunctional adenine a (3R)-3- biosynthesis I bifunctional UDP- 2'-deoxyadenosine lyase: adenosine(37)-C2)- adenosylcobinamide phosphotransferase cysteine response reductase: an acetoacetyl-[acp] a (3R)-3- pyruvate kinase phosphoenolpyruvate cytidine containing guanine dinucleotide kinase PykF: -[acetyl-CoA- IX92_RS18200 methyltransferase synthase: synthase: decarboxylase: a,c-diamide phosphate hydroxymethylpyrimidine nicotinate-nucleotide-- aminomethylpyrimidine IX92_RS10235 methylthiotransferase desulfurase CsdA: -ammonia ligase]- IX92_RS16840 IX92_RS16840 bifunctional regulator protein- IX92_RS10190 tnaA IscS subfamily GTP 4-hydroxybenzoate hydroxydodecanoyl- hydroxydecanoyl- a CDP-diacylglycerol PykF: IX92_RS13200 carboxylase: sugar hydrolase/5'- deaminase: kinase/ PtsI: IX92_RS11535 protein: biosynthesis IX92_RS13200 carboxylase] BioC: IX92_RS09625 IX92_RS04405 IX92_RS04405 IX92_RS13935 cob(II)alamin adenosyltransferase: dehydrogenase: kinase/ dimethylbenzimidazole [+ 3 isozymes] MiaB: IX92_RS11550 CsdA: IX92_RS12145 adenylyl-L-tyrosine type I methionyl type I methionyl proline glutamate peptide- cysteine a malonyl-[acp] cysteine cyclohydrolase octaprenyltransferase: thiaminase II: 3-oxoacyl- [acp] 3-hydroxyacyl- [acp] bifunctional 3- CDP-diacylglycerol--serine IX92_RS15015 nucleotidase: ushA purine-nucleoside IX92_RS06240 thymidine (R)-S- adenosylcobinamide- phosphoenolpyruvate- IX92_RS18375 adaptor protein synthetase/ peptide- coproporphyrinogen III IX92_RS10480 IX92_RS13250 phosphomethylpyrimidine pyruvate kinase: IX92_RS12145 IscS subfamily phosphorylase/ aminopeptidase: pyruvate kinase: aminopeptidase: dehydrogenase/L- methylesterase: methionine desulfhydrase: methyl ester desulfurase: isochorismate I FolE: IX92_RS00895 phosphoribosyltransferase: IX92_RS24455 [acyl-carrier- hydroxydecanoyl- O-phosphatidyltransferase: [+ 3 isozymes] adenosine phosphorylase: [+ 2 isozymes] lactoylglutathione succinate phosphate protein methionine isochorismate cob(I)yrinic acid [corrinoid kinase: IX92_RS24475 ACP IX92_RS04320 thiosulfate MobB/molybdopterin [glutamate-- IX92_RS04320 glutamate gamma- IX92_RS03770 biotin operon (S)-S-oxide IX92_RS02260 IX92_RS20845 oxygen-independent 4-phospho- IX92_RS06305 protein] pssA deaminase: IX92_RS12170 thymidine dehydrogenase, guanylyltransferase: IscS subfamily cysteine IX92_RS11910 IX92_RS11910 (R)-S-oxide tnaA beta-ketoacyl- a,c-diamide adenosyltranferase]- adenine ribotide 4-amino-2-methyl-5- reductase ACP dehydratase/ a 3-sn-phosphatidyl- hydroxyacylglutathione phosphotransferase sulfurtransferase molybdotransferase ammonia-ligase] semialdehyde repressor: reductase MsrA: 3-octaprenyl-4- D-erythronate dehydratase oxaloacetate phosphorylase: hydrophobic IX92_RS06315 cysteine desulfurase: cysteine 2-succinyl-5- 2-succinyl-5- GTP coproporphyrinogen adenosyltransferase: cob(II)inamide HMP-P pyrimidinemethanol FabG: fabG trans-2-decenoyl- L-serine adenosine IX92_RS04375 purine-nucleoside 2'-deoxyuridine PtsP: IX92_RS02000 MoeA: IX92_RS07695 adenylyltransferase: chemotaxis IX92_RS15165 reductase: [acyl-carrier- DUF3410 phosphate pyruvate IX92_RS12180 hydrolase: IX92_RS11790 GlpE: desulfurase: IX92_RS02260 dehydrogenase IX92_RS13635 desulfurase enolpyruvyl- enolpyruvyl- cyclohydrolase III oxidase: hydroxybenzoate FabZ: ACP isomerase: IMP adenosine purine-nucleoside phosphorylase: membrane adenosyl- an N-terminal L- an N-terminal L- response a protein-L- IX92_RS20830 protein] IX92_RS10480 [+ 2 isozymes] phosphatidylserine NAD-dependent IX92_RS00875 molybdopterin IX92_RS01880 pyruvate PutA: a [protein]-L- indole pyruvate CsdA: 6-hydroxy-3- 6-hydroxy-3- IX92_RS00390 4-hydroxy-3- domain- bifunctional 5-(2-hydroxyethyl) IX92_RS11850 IX92_RS06900 adenosine deaminase: GMP IX92_RS23685 anchor protein: IX92_RS02260 met cysteinyl-[protein] dGTP met alanyl-[protein] regulator protein- methionine- synthase I: I FolE: cob(II)alamin- adenosylcobinamide- a (3R)-3- a (2E)-dodec- decarboxylase: malic enzyme: deaminase: phosphorylase: thymine (R)-lactate cobinamide an [HPr protein]- molybdotransferase: IX92_RS23785 methionine IX92_RS12145 cyclohexene- cyclohexene- polyprenylbenzoate containing hydroxymethylpyrimidine -4-methylthiazole IX92_RS04375 IX92_RS03205 a purine π pyruvate a [ThiI sulfur- glutamate biotinyl-5'- (S)-S-oxide IX92_RS03625 IX92_RS10470 [corrinoid GDP hydroxybutanoyl- 2-enoyl-[acp] 3-hydroxyacyl- IX92_RS13895 2-hydroxyacid formate C- IX92_RS05440 IX92_RS15695 IX92_RS12170 uridine phosphate N -phospho- protoporphyrinogen IX [corrinoid protein: kinase/ IMP dehydrogenase: an unsulfurated IX92_RS20850 ala carrier protein]- a [glutamine methylesterase: adenylate 1-carboxylic- 1-carboxylic- 7,8- decarboxylase: adenosyltranferase] ribazoletransferase: [acp] dehydrogenase: adenosine deaminase: bifunctional UDP- purine-nucleoside ribonucleoside L-histidine thiocyanate glu an S-sulfanyl-[L- adenosyltranferase]- [acyl-carrier- an L-1- acetyltransferase: IX92_RS02795 phosphorylase: 6 a thiocarboxy- synthetase]-O beta-ketoacyl- acid synthase: acid synthase: dihydroneopterin IX92_RS00630 IX92_RS03630 phosphomethylpyrimidine bifunctional 3- cyclopropane (S)-malate 2-methylsulfanyl-N - 5'-diphosphate [sulfur carrier] ala S-sulfanyl- IX92_RS24670 IX92_RS06310 3-hydroxyacyl- IX92_RS19350 IX92_RS15695 sugar hydrolase/5'- phosphorylase: WO - AMP 4 cysteine desulfurase] cob(I)inamide α α protein] phosphatidylethanolamine IX92_RS04985 IX92_RS10530 37 an unsulfurated 2 [ThiS-Protein] -(5'-adenylyl) [acyl-carrier- IX92_RS04410 IX92_RS04410 3'-triphosphate (3R)-3-hydroxy-2-oxo- kinase: IX92_RS24475 Co -[ -(adenin- hydroxydecanoyl- fatty acid (CFA) 5'-deoxyadenosine dimethylallyladenosine L-cysteine 4-methyl-5-(2- β [acyl-carrier- dehydratase D-lactate nucleotidase: ushA 2'-deoxyinosine purine-nucleoside IX92_RS23685 met molybdopterin -L-tyrosine formate RS09945 formate protein] scaffold protein 2-octaprenylphenol cob(I)yrinic acid 4 phosphooxybutanoate 9-yl)]-Co - ACP dehydratase/ biosynthesis fumarate hydratase: pyruvate in tRNA [sulfur carrier] AMP [+ 2 isozymes] [+ 2 isozymes] phosphooxyethyl) protein] FabZ: dehydrogenase: inosine [+ 3 isozymes] XMP phosphorylase: cofactor a [protein]-α- synthase II: for iron-sulfur cob(I)alamin- a,c-diamide HMP-PP adenosylcobamide trans-2-decenoyl- a [phospholipid] cis IX92_RS05540 MeOH 2-succinyl-5- 2-succinyl-5- protoporphyrin IX 2-octaprenylphenol 3-phosphoserine/ thiazole dehydratase formate acetyl-CoA IX92_RS12170 L-glutamate IX92_RS04260 [corrinoid adenosyltransferase: 5'-phosphate ACP isomerase: IX92_RS11850 -olefinic fatty acid IX92_RS09050 class II fumarate uracil 2-deoxy-α-D- cluster assembly: enolpyruvoyl- enolpyruvoyl- 7,8- 6-hydroxylase: phosphohydroxythreonine FabZ: a (2E)-dec- cyclopropane- purine-nucleoside guanosine bifunctional UDP- adenosyltranferase] IX92_RS10480 D-glyceraldehyde alpha-ribazole IX92_RS06900 hydratase: aspA purine-nucleoside ribose 1-phosphate formate RS20060 formate a 3-oxoglutaryl- IX92_RS02265 6-hydroxy-3- 6-hydroxy-3- deferrochelatase: pyruvate transaminase: IX92_RS05080 IX92_RS11850 2-enoyl-[acp] fatty-acyl- phosphorylase: sugar hydrolase/5'- dihydroneopterin IX92_RS01705 cob(I)yrinic acid 3-phosphate thiamine phosphatase: phosphatidylglycerol phosphate citrate synthase: phosphorylase: [acp] methyl ester an S-sulfanyl-[cysteine cyclohexene- IX92_RS03435 phospholipid (R)-lactate IX92_RS12170 nucleotidase: ushA phosphopentomutase: an inactive 3-phenyl-2- a [DNA]-3'- a 5'-phospho- a DNA containing sn-glycero-3- (S)-5-amino-3- a [glutamine an N-terminal- an N-terminal- an N-terminal- a peptide with queuosine at an oxidized cyclohexene- 3'-phosphate 3-(all-trans-octaprenyl) a,c-diamide adenosylcobinamide 4-phosphooxy- phosphate IX92_RS06320 a (3Z)-dodec- bifunctional 3- fumarate purine-nucleoside IX92_RS23685 a reduced + an unsulfurated phosphoenol L-threo-3- desulfurase]-[disordered- a (2E)-but- biosynthesis I (plastidic) acetyltransferase: IX92_RS03195 α ribonucleoside SAM tyr NAD an apurinic/ phospho-N- acetyl-CoA cys synthetase]-O L-methionyl-L- L-methionyl-L- L-methionyl- an N-terminal glu position 34 nitroaromatic 1-carboxylate 1-carboxylate [+ 2 isozymes] adenosyltransferase: L-threonine synthase: Coα-[α-(adenin- 3-enoyl-[acp] synthase: purine-nucleoside phosphorylase: [+ 3 isozymes] 2-deoxy- -D-ribose 1-phosphate IX92_RS12175 oxopropanoate hydroxyl [DNA] oxohexanoate dADP pyruvate phenylserine IMP 3-oxoacyl- benzene-1,2-diol 1-deoxy-D- 2-enoyl-[acp] hydroxydecanoyl- IX92_RS04525 flavodoxin [sulfur carrier] 4 Asp form scaffold 2-succinyl-6- 2-succinyl-6- bifunctional β IX92_RS28230 triphosphate apyrimidinic site (arachidonoyl) -(5'-adenylyl) threonyl-[protein] seryl-[protein] glycyl-[protein] L-methionine of a tRNA compound ACP IX92_RS10480 4-hydroxythreonine- IX92_RS08680 7-yl)]-Co - beta-ketoacyl- ACP dehydratase/ DHAP a [phospholipid] CO H acetaldehyde succinate phosphorylase: IX92_RS12170 2-deoxy-D-ribose oxygen- formate RS08055 formate protein] complex hydroxy-2, 4- protoheme bifunctional 2- xylulose-5- 2 2 phosphate phosphopentomutase: reductase ethanolamine -L-tyrosine bifunctional hydroxy-2, 4- adenosylcobinamide adenosylcobamide fatty acid containing citrate dehydrogenase/ IX92_RS23685 xanthosine 5-phosphate insensitive reductase [cysteine desulfurase]-S- polyprenyl-6- cob(I)alamin phosphate 4-phosphate thiamine [acyl-carrier- trans-2-decenoyl- NAD(P)H- purine-nucleoside DNA ligase: 3-keto-5- UDP-sugar cyclohexadiene- cyclohexadiene- D-erythro-7,8- kinase/ acetyltransferase: NADH-dependent fumarate reductase IX92_RS12175 aspartate/ endonuclease III: type I methionyl low-specificity type I methionyl type I methionyl type I methionyl NADPH FabG: fabG sulfanylcysteine:[acceptor synthase: dehydrogenase phosphate protein] ACP isomerase: cyclopropane phosphorylase: IX92_RS07780 aminohexanoate cysteine tRNA glutamyl- hydrolase/5'- 1-carboxylate 1-carboxylate dihydroneopterin hydroxyphenol adenolsyltransferase/ dependent IX92_RS04780 bifunctional tyrosine/aromatic pyruvate L-threonine protein]-cysteine chorismate adenosylcobinamide- PdxA: synthase: IX92_RS06900 alcohol iron-sulfur: hypoxanthine IX92_RS23685 deoxyribose- anaerobic IX92_RS10865 glycerophosphodiester desulfurase bifunctional [glutamate- aminopeptidase: aminopeptidase: aminopeptidase: aminopeptidase: Q(34) nitroreductase: a metal a metal [+ 2 isozymes] synthase: methylase/3- cobinamide IX92_RS03270 synthase I: glycerol-3- aconitate hydratase 2-deoxy-D-ribose 5-phosphate aminotransferase: NAD- cleavage protein: kinase PykF: nucleotidase: sulfurtransferase: synthase: bifunctional phosphate a butanoyl-[acp] dehydrogenase: IX92_RS15050 purine-nucleoside ribonucleoside- bifunctional DNA- phosphodiesterase: CsdA: -ammonia ligase]- IX92_RS16840 aldolase: IX92_RS16840 IX92_RS16840 IX92_RS16840 synthetase IX92_RS17190 a (3R)-3- demethylubiquinol 3- ATP-dependent IX92_RS13105 IX92_RS00185 IX92_RS03625 a (3Z)-dec- phosphate 2/2-methylisocitrate phosphate IX92_RS05460 dependent IX92_RS27460 ushA cation cation IX92_RS04415 IX92_RS04415 dihydroneopterin aminodeoxychorismate guanylyltransferase: phosphopantothenate biosynthesis I pyruvate IX92_RS20665 IX92_RS15055 triphosphate IX92_RS01665 IX92_RS12145 adenylyl-L-tyrosine IX92_RS13200 IX92_RS21495 GluQRS: RS14900 hydroxyglutaryl- IX92_RS02260 adenolsyltransferase: 1-deoxy-D- 3-amino-1- dehydrogenase: acetyl phosphate guanine phosphorylase: aldolase: DNA ligase formamidopyrimidine type I methionyl type I methionyl type I methionyl type I methionyl NAD(P)H a [cysteine desulfurase]- aldolase/7,8- O-methyltransferase IX92_RS06315 beta-ketoacyl- 3-enoyl-[acp] dehydratase: aspartate/ 3-keto-5- pyruvate kinase: [+ 3 isozymes] [acp] methyl ester 2-succinyl-6- 2-succinyl-6- synthase hydroxyacetone beta-ketoacyl- long-chain fatty fermentation IX92_RS15060 xanthine IX92_RS12170 deoxyribose- IX92_RS12185 reductase glycosylase/ glycerophosphodiester IscS subfamily phosphorylase/ aminopeptidase: aminopeptidase: aminopeptidase: aminopeptidase: IX92_RS12815 nitroreductase: acetate acetate S-sulfanyl-[disordered- UbiG: IX92_RS08215 IX92_RS19290 xylulose 5- thiamine [acyl-carrier- IX92_RS15030 ethanol IX92_RS12785 LigA: ligA aminohexanoate inosine hydroxy-2, 4- dihydroneopterin component 1: pabB adenosyl- 1-phosphate [acyl-carrier- beta-ketoacyl- sn-glycerol acid activation to (R)-acetoin II IX92_RS15065 phosphate aldolase: activating tyrosine/aromatic DNA-(apurinic or phosphodiesterase: [glutamate-- IX92_RS11910 IX92_RS04320 IX92_RS11910 IX92_RS11910 IX92_RS11910 IX92_RS03875 3-hydroxyacyl- hydroxy-2, 4- adenosylcob(III) phosphate phosphate 3-methyl-2-oxobutanoate protein] acetate kinase: dehydrogenase: purine-nucleoside cleavage protein: cysteine a reduced form scaffold cyclohexadiene- epimerase: 2-methoxy-6-(all-trans cobinamide [acyl-carrier- IX92_RS12185 protein: aminotransferase: ammonia-ligase] benzaldehyde gly predicted [acyl-carrier- cyclohexadiene- aminodeoxychorismate/ alamin-[corrinoid protein] 3-phosphate a long-chain pyruvate IX92_RS04785 cis-aconitate IX92_RS16545 guanine deaminase: phosphorylase: D-glyceraldehyde apyrimidinic site) IX92_RS23915 desulfurase: glutamyl- nitroaromatic protein] complex IX92_RS13045 -octaprenyl)phenol phosphate thiamine- synthase II: protein] succinate acetaldehyde purine ribonucleosides degradation IX92_RS19785 IX92_RS19790 IX92_RS23735 ABC protein] IscS subfamily 1-carboxylate 1-carboxylate anthranilate synthase pyridoxine 5'- 3-methyl-2-oxobutanoate synthase II: glycerol-3- acetolactate acetate kinase: IX92_RS16550 IX92_RS16535 IX92_RS23685 3-phosphate [DNA] NMN lyase: IX92_RS15385 IX92_RS02260 adenylyltransferase: queuosine at compound thiamine thiamine adenosyltranferase] phosphate IX92_RS04260 fatty acid an N-terminal L- pyruvate an N-terminal an N-terminal transporter dehydratase synthase: synthase: 6-(hydroxymethyl) component II: 2-octaprenyl-6- bifunctional phosphate hydroxymethyltransferase: IX92_RS04260 synthase I: phosphate 1-O- long-chain- synthase AlsS: bifunctional D-glyceraldehyde 3-phosphate AMP IX92_RS01880 met met met met position 34 cysteine cob(I)yrinic acid kinase: a (5Z)-3-oxo- IX92_RS21395 acetaldehyde 3-(4- sn-glycerol (S)-3- threonyl-[protein] dATP L-seryl-[protein] glycyl-[protein] a peptide IX92_RS13055 IX92_RS13055 -7,8-dihydropterin IX92_RS14785 methoxyphenyl 5,6-dimethylbenzimidazole adenosylcobinamide synthase: IX92_RS12830 IX92_RS03625 fatty-acid--CoA aconitate hydratase anandamide of a tRNA Asp of thiamine FabZ: desulfurase: a,c-diamide beta-ketoacyl- tetradec-5- acyltransferase IX92_RS27325 an active acetoacetate (1R,6R)-6-hydroxy- (1R,6R)-6-hydroxy- hydroxylase: kinase/ IX92_RS11930 ligase FadD: acetate 2/2-methylisocitrate xanthine adenosine 5'-deoxyadenosine a flavodoxin hydroxyphenyl) phe a 3'-terminal a 5'-phospho- 3-phosphate aminobutanoyl- a sulfurated IX92_RS11850 IX92_RS02260 2-amino-4-hydroxy-6- 4-amino-4- adenosyltransferase: IX92_RS01785 adenosylcobinamide- [acyl-carrier- beta-ketoacyl- PlsY: [+ 2 isozymes] met ribonucleoside ala a [glutamine- 2-succinylcyclohexa- 2-succinylcyclohexa- nicotinate-nucleotide-- 2-dehydropantoate enoyl-[acp] semiquinone pyruvate unsaturated sugar [DNA] CoA [sulfur carrier] thiamine RS09360 thiamine a (2E)- hydroxymethyldihydropteridine IX92_RS01700 adenosylcobinamide- GDP biosynthesis from thiamine protein] [acyl-carrier- IX92_RS13050 IX92_RS04195 dehydratase: UTP and CTP dephosphorylation I triphosphate synthetase]- cysteine 2,4-diene-1- 2,4-diene-1- deoxychorismate IX92_RS10480 dimethylbenzimidazole 3-oxoacyl- (S)-2-acetolactate pyrimidine xanthine acetyl-CoA ADP enoylglutaryl- 2-methoxy-6-all trans- phosphate cobyrinate a,c-diamide diphosphate [+ 2 isozymes] IX92_RS12785 adenosine deaminase: reductase L-tyrosine desulfurase diphosphokinase: IX92_RS10460 pyridoxine 2-dehydropantoate 2- synthase I: ACP protein] a long-chain ribonucleosides dehydrogenase [acp] methyl ester carboxylate carboxylate aminodeoxychorismate adenosylcobalamin phosphoribosyltransferase: guanylyltransferase: cob(II)yrinate glycerol-3- acetolactate IX92_RS04375 [+ 2 isozymes] octaprenyl-1,4-benzoquinol 5'-phosphate reductase: IX92_RS12135 IX92_RS03625 reductase synthase II: fatty acyl-CoA accessory protein UTP acetyl-CoA CsdA: o-succinylbenzoate o-succinylbenzoate lyase: IX92_RS04265 IX92_RS06305 IX92_RS06315 NAD de novo biosynthesis phosphate 1-O- decarboxylase: D-threo-isocitrate degradation adenosine deaminase: (7,8-dihydropterin- bifunctional a,c-diamide FabG: fabG IX92_RS04260 a purine RS16465 a purine IX92_RS12145 synthase: synthase: α pyridoxamine β acyltransferase: cytidine XdhC: IX92_RS16540 an S-sulfanyl-[cysteine 6-yl)methyl -ribazole adenosylcobinamide- cob(I)yrinic acid I (from aspartate) -alanine (R)-pantoate a 3-oxohexanoyl- a (3R,5Z)-3- a (5Z)-3- IX92_RS27320 CTP nucleoside IX92_RS15695 IX92_RS04425 IX92_RS04425 4-aminobenzoate demethylmenaquinone 5'-phosphate IX92_RS00900 NADP-dependent cytidine [+ 2 isozymes] core M-antigen a reduced an sn-glycero-3- an N-terminal- 5'-phosphate [acp] oxododec- synthase: triphosphate 34 ubiquinone-6 H O ammonium NAD(P) + H O an N-modified a lipid II an L-asparaginyl- an L-cysteinyl- an L-cysteinyl- desulfurase]-S- diphosphate methyltransferase/2- GDP a,c-diamide hydroxy-tetradec- isocitrate a 5,10- a uridine (variant) monomer electron-transfer diphosphate 2 phospho-N-(acyl) KDGP 2 L-allo-threonine L-methionyl-L- arg oxidase: a 1-acyl-sn (R)-acetoin deaminase: gly oligosaccharide- L-cystathionine Asn Cys ATP roseoflavin Pro a glutaryl-[acp] adenosyltransferase: asp 5-enoyl-[acp] 5-enoyl-[acp] pyrG hydrolase: xanthosine adenosine inosine guanosine aminoacyl-[tRNA] [tRNA ] [tRNA ] [tRNA ] sulfanyl-[disordered- 2-succinylbenzoate 2-succinylbenzoate methoxy-6-polyprenyl-1,4- IX92_RS23810 3-oxoacyl- -glycerol 3- dehydrogenase: IX92_RS06240 urate methylenetetrahydrofolate in tRNA lipid A (E. coli undecaprenyl flavoprotein ethanolamine valyl-[protein] arginine 2+ 2+ methyl ester pantoate--beta-alanine 5'-phosphate Fe RS03700 Fe form scaffold dihydropteroate benzoquinol methylase adenosylcobinamide- IX92_RS10480 L-aspartate ACP 3-hydroxyacyl- 3-oxoacyl- IX92_RS09985 IX92_RS05550 pyrimidine deoxyribonucleotides K-12 core type) diphosphate ligase: IX92_RS12835 phosphate [+ 2 isozymes] serine-type deiminase: beta-ketoacyl- protein] complex o-succinylbenzoate- o-succinylbenzoate- synthase: GDP cob(II)yrinate a,c- oxidase: reductase [acyl-carrier- ACP CTP dephosphorylation electron transfer nitrite reductase [cysteine desulfurase]-S- UbiE: IX92_RS00315 PLP 1-acyl-sn-glycerol- uridine tRNA uridine-5- (no GlcNAc) manganese- glycerophosphodiester 2-dehydro-3-deoxy- aminoacyl-tRNA D-Ala-D-Ala cysteine low-specificity type I methionyl aminoacyl-tRNA aminoacyl-tRNA Cys-tRNA(Pro) IX92_RS01125 [acyl-carrier- -CoA ligase: -CoA ligase: IX92_RS12620 diamide-[corrinoid protein] reductase 2-oxoglutarate UDP purine-nucleoside purine-nucleoside purine-nucleoside purine-nucleoside (NAD(P)H) sulfanylcysteine:[acceptor 6-methoxy-3-methyl- ribazoletransferase: IX92_RS01735 FabG: fabG 3-phosphate nucleoside nucleoside triphosphate flavoprotein- dependent inorganic phosphodiesterase: phosphogluconate hydrolase: carboxypeptidase: desulfhydrase: L-threonine aminopeptidase: hydrolase: hydrolase: bifunctional deacylase: IX92_RS04430 IX92_RS04430 flavin biosynthesis I (bacteria and plants) adenosyltranferase] 2-iminosuccinate FabG: fabG uridine carboxymethylaminomethyl(34) small subunit: arginine protein] 2-all-trans-octaprenyl- superpathway of thiamine diphosphate biosynthesis I IX92_RS06310 (R)-pantothenate [+ 2 isozymes] dehydratase acyltransferase: triphosphate pyrophosphohydrolase: phosphorylase: phosphorylase: phosphorylase: phosphorylase: ubiquinone pyrophosphatase: aldolase: riboflavin kinase/ IX92_RS11055 L-cystine RS06290 L-cystine protein]-cysteine 4-(2'- 4-(2'- a (3R,5Z)-3- phosphorylase: synthesis GTPase O-antigen IX92_RS23915 IX92_RS21050 IX92_RS11110 IX92_RS12650 tnaA aldolase: IX92_RS16840 IX92_RS11110 IX92_RS11110 deiminase: synthase I: 7,8- 1,4-benzoquinol a (3R)-3- FabZ: IX92_RS02850 hydrolase: IX92_RS01810 IX92_RS12170 IX92_RS12170 IX92_RS12170 IX92_RS12170 oxidoreductase: IX92_RS09485 IX92_RS16350 FAD synthetase: sulfurtransferase: carboxyphenyl)- carboxyphenyl)- quinolinate hydroxydodec- IX92_RS10530 MnmE: IX92_RS15990 ligase domain- glycerophosphodiester aminoacyl-tRNA cysteine IX92_RS21495 type I methionyl aminoacyl-tRNA aminoacyl-tRNA IX92_RS14850 IX92_RS03625 dihydropteroate adenosylcobalamin type I pantothenate hydroxyhexanoyl- IX92_RS11850 dCTP dCMP purine-nucleoside purine-nucleoside purine-nucleoside purine-nucleoside IX92_RS21180 nitrite IX92_RS02050 IX92_RS02260 2-octaprenyl- synthase NadA: 1-acyl-sn-glycerol- 2-oxoglutarate decarboxylation to succinyl-CoA Respiration IX92_RS05550 UMP containing inorganic phosphodiesterase: 2-dehydro-3-deoxy- hydrolase: desulfhydrase: aminopeptidase: hydrolase: hydrolase: a [cysteine 4-oxobutyryl-CoA 4-oxobutyryl-CoA bifunctional GTP cys kinase: IX92_RS14030 [acp] a (2E,5Z)- 5-enoyl-[acp] uracil tRNA uridine-5- a N- L-citrulline beta-ketoacyl- 3-methyl-6- 5'-phosphate cob(I)yrinate a,c- IX92_RS09815 3-phosphate phosphorylase: phosphorylase: phosphorylase: phosphorylase: diphosphatase: phosphogluconate reductase small Pro 2+ 2+ 1,4-dihydroxy- 3-hydroxyacyl- CDP protein: IX92_RS01665 IX92_RS23405 D-ala tnaA IX92_RS11910 IX92_RS23405 IX92_RS23405 cys a tRNA Ca RS01080 Ca desulfurase]-(S- (2E,6E)-farnesyl (2E,6E)-farnesyl 1,4-dihydroxy- tetrahydrofolate 3-hydroxyacyl- tetradeca-2,5- bifunctional nucleoside triphosphate IX92_RS23685 IX92_RS23685 IX92_RS23685 IX92_RS23685 carboxymethylaminomethyl(34) an oxidized subunit NirD: acetylglucosamine- [acyl-carrier- IPP IPP methoxy-1,4- diamide-[corrinoid acyltransferase: a [2-oxoglutarate + IX92_RS13615 aldolase: acetaldehyde roseoflavin sulfanyl) -[disordered- diphosphate 2-naphthoyl- diphosphate 2-naphthoyl- GTP IscS subfamily alpha-ribazole (R)-4'-phosphopantothenate dienoyl-[acp] [acyl-carrier- synthesis enzyme IX92_RS02400 H ubiquinol-6 -N-acetylmuramyl- gly 2 synthase/ quinolinate [acyl-carrier- Pentose Phosphate Pathways UDP-sugar pyrophosphohydrolase: electron-transfer IX92_RS08060 protein] benzoquinol phosphatase: adenosyltranferase] IX92_RS01120 dehydrogenase IX92_RS20715 adenine form scaffold CoA synthase: CoA synthase: cyclohydrolase cysteine protein] MnmG: IX92_RS00005 (tetrapeptide) + + synthase II: dihydrofolate hydroxylase: ubiF cob(I)yrinic acid protein] a 1,2-diacyl- E2 protein] N 6 hydrolase/5'- IX92_RS01810 flavoprotein sn-glycerol an N- an uncharged an N-terminal dinucleotide H RS22205 H IX92_RS06320 dehydratase α-D-ribose-1-phosphate an N-modified 2-oxobutanoate Asn Cys protein] complex octaprenyl IX92_RS04420 octaprenyl IX92_RS04420 synthase: II RibA: desulfurase: quinolinate dehydratase 2-oxoglutarate dUTP dUMP Alcohol Degradation di-trans,octa-cis pyrophosphoryl- cys met asn tRNA cys a tRNA IX92_RS04260 a,c-diamide sn-glycerol -lipoyl-L-lysine pentose phosphate pathway S-methyl-5'-thioadenosine CMP nucleotidase: E. coli M H + 3-phosphate acylethanolamine amino acid tRNA L-valyl-[protein] an anion RS24250 an anion IX92_RS02260 FabZ: LPS -undecaprenyl phosphate undecaprenol diphosphate 1,4-dihydroxy-2- IX92_RS05595 3-demethylubiquinol-8 phosphoribosyltransferase dehydrogenase 34 D-glyceraldehyde nitrite diphosphate 1,4-dihydroxy-2- IX92_RS03655 adenosylcobalamin adenosyltransferase: FabZ: 3-phosphate degradation IV ushA phosphopentomutase: a 5-carboxymethylaminomethyluridine pyruvate a 3-oxopimeloyl- synthase: naphthoyl-CoA cysteine (decarboxylating) a (5Z)-tetradec- IX92_RS11850 2-oxoglutarate E1 component: a 7,8-dihydrofolate diphosphate 3-phosphate synthase: naphthoyl-CoA IX92_RS10480 IX92_RS11850 bifunctional glycerol and glycerophosphodiester degradation in tRNA + + 7,8-dihydrofolate bifunctional 2-methyladeninyl CDP-diglyceride D-glucopyranose S-methyl-5'- [+ 3 isozymes] IX92_RS12175 H RS08125 H [acp] methyl ester IX92_RS13155 IX92_RS13155 bifunctional 2- desulfurase : IX92_RS12920 5-enoyl-[acp] a (2E,5Z)-dodeca- dehydrogenase IX92_RS03220 UDP-sugar 5-hydroxy-CTP 5-hydroxy-CMP ethanol degradation II a [cysteine desulfurase]- monoglutamate 3,4-dihydroxy- adenosyl-cob(III) adenosylcobamide biosynthesis a (2E)-hex- synthase: 6-phosphate thioadenosine hemin RS22215 hemin polyprenyl-6- CsdA: beta-ketoacyl- 3,5-dienoyl-[acp] E1 component: 2-oxoglutarate hydrolase/5'- uridine 3-oxoacyl- [scaffold protein- 2-butanone- yrinate a,c-diamide NaMN from adenosylcobinamide-GDP 2-enoyl-[acp] IX92_RS11880 glucose-6- 5'-methylthioadenosine/ D-ribose 5-phosphate a glycerophosphodiester all-trans- all-trans- hydroxyphenol IX92_RS03220 glycerol 34 a [ThiI sulfur- an N-formyl-L- a mature a [protein] N- a [protein] ACP 4-phosphate IX92_RS12145 [acyl-carrier- dehydrogenase: S-adenosylhomocysteine nucleotidase: ethanol a 5,10- a 2-thiouridine a single a [protein]- sn-glycerol N-acetyl- (2Fe-2S)] complex a CDP- phosphate a uracil in tRNA glycerophosphoserine FAD α 34 urea-1-carboxylate an aromatic sec histidinol octaprenyl 1,4-dihydroxy- octaprenyl 1,4-dihydroxy- methylase/3- an [L-cysteine cobyric acid 2-methyladenine carrier protein]- methionylaminoacyl- peptidoglycan -D- terminal-formyl- C-terminal glu a cytidine lys ser a tRNA + + reductase protein] [+ 3 isozymes] IX92_RS18730 nucleosidase: ushA methylenetetrahydrofolate in tRNA stranded DNA (n) L-threonine 3-phosphate H RS08130 H synthase/GTP nicotinate-nicotinamide diacylglycerol dehydrogenase: NADH-dependent ATP Ile2 amino acid L-citrulline diphosphate 2-naphthoate diphosphate 2-naphthoate demethylubiquinol 3- desulfurase]-S- synthase: nicotinate-nucleotide-- a [2-oxoglutarate a [2-oxoglutarate S-sulfanyl- tRNA (meso-DAP glucopyranose L-methionine L-glutamate in tRNA anaerobic glycerol- histidinol FabG: fabG cyclohydrolase nucleotide synthase I: IX92_RS18790 IX92_RS01940 [+ 3 isozymes] glycerophosphodiester alcohol aspartate/ fluoride RS00175 fluoride a 7,8-dihydrofolate O-methyltransferase sulfanyl-L-cysteine IX92_RS20610 dimethylbenzimidazole CDP-diacylglycerol-- dehydrogenase dehydrogenase L-cysteine containing) 1-phosphate dehydrogenase: [+ 2 isozymes] II: IX92_RS11945 (R)-1-amino- adenylyltransferase: IX92_RS03625 a (5Z)-dodec- MTR phosphodiesterase: dehydrogenase: 3-phosphate tyrosine/aromatic a [co-chaperone]- 1,4-dihydroxy- 1,4-dihydroxy- UbiG: IX92_RS08215 IscS subfamily glycerol-3-phosphate 3- 6 6 6-phospho cytidine tRNA uridine-5- exodeoxyribonuclease glycerophosphodiester FAD:protein FMN allophanate IX92_RS09530 a (3R)-3- dihydrofolate 2,5-diamino-6- molybdenum cofactor biosynthesis adenosylcobyrate 2-propanol O IX92_RS23005 phosphoribosyltransferase: E2 protein] N E2 protein] N -S- Aromatic Compound glycerol IX92_RS23915 IX92_RS20665 peptide peptide 30S ribosomal tRNA dehydrogenase: aminotransferase: acetylornithine serine-- 2-naphthoate a hexanoyl-[acp] beta-ketoacyl- 5-enoyl-[acp] phosphatidyltransferase: D-glucono- carboxymethylaminomethyl(34) VII large subunit: tRNA 4- phosphodiesterase: transferase: hydrolase: H + RS03515 H + hydroxypimeloyl- [scaffold protein- 2-naphthoate cysteine -2-phosphate IX92_RS06305 -dihydrolipoyl- succinyldihydrolipoyl- Degradation deformylase: glucose-1-phosphate deformylase: lysidine(34) IX92_RS19825 deacetylase: tRNA ligase: histidinol reductase: (5-phospho-D- nicotinate adenine [acyl-carrier- 1,5-lactone glycerophosphodiester acetaldehyde synthesis GTPase IX92_RS02790 IX92_RS23915 lytic IX92_RS12055 protein S6--L- IX92_RS19975 IX92_RS05460 (2Fe-2S)] complex polyprenyltransferase: polyprenyltransferase: ubiquinol-8 desulfurase: IX92_RS09245 L-lysine L-lysine thiouridine(8) adenylyltransferase: IX92_RS14225 dehydrogenase: lipid A RS04920 lipid A [acp] methyl ester IX92_RS23375 ribosylamino) 2-methyladenine beta-ketoacyl- phosphodiesterase: IX92_RS08545 transglycosylase IX92_RS08545 glutamate ligase: synthetase TilS: IX92_RS19835 IX92_RS04135 IX92_RS14060 IX92_RS14060 IX92_RS02260 dinucleotide protein] 1-(3-sn- 6-phosphogluconolactonase: glycerol kinase: MnmE: IX92_RS15990 exodeoxyribonuclease synthase ThiI: glycerophosphodiester FAD:protein FMN IX92_RS20655 allophanate aspartate/ IX92_RS08770 3-hydroxyacyl- pyrimidin- a ThiS sulfur- adenosylcobinamide- ribotide phosphate protocatechuate peptide F: IX92_RS02185 peptide IX92_RS12005 IX92_RS11820 ATP NAD+ ammonia- [acyl-carrier- synthase II: phosphatidyl) IX92_RS18785 IX92_RS19845 IX92_RS01665 VII small subunit: IX92_RS03295 phosphodiesterase: transferase: glycerol-3- hydrolase tyrosine/aromatic [acyl-carrier- a tetrahydrofolate 4(3H)-one cysteine carrier protein cys phosphate synthase: degradation II (ortho- tRNA uridine-5- glucose-1-phosphate F0F1 ATP protein] deformylase: [+ 5 isozymes] deformylase: phosphate his + + IX92_RS01935 synthetase, dependent IX92_RS04260 -sn-glycerol Polymeric Compound Degradation cleavage pathway) carboxymethylaminomethyl(34) IX92_RS03280 IX92_RS01665 IX92_RS17305 subunit 1: aminotransferase: acetate an L-seryl- H H protein] a [chaperone-ATP]- demethylmenaquinol-8 bifunctional desulfurase adenosylcobinamide- D-gluconate adenylyltransferase: 34 synthase demethylmenaquinol-8 synthase II: a (7Z)-3-oxo- a [ThiI sulfur- a 4-thiouracil IX92_RS15785 IX92_RS15785 a [protein] C- a lysidine dehydrogenase: L-citrulline sec predicted IscS subfamily molybdopterin- glutamine NAD(+) 3-phosphate 2-oxoglutarate 6-phosphate acetate synthesis enzyme IX92_RS19980 IX92_RS19790 [tRNA ] dehydratase [co-chaperone]- diaminohydroxyphosphoribosylaminopyrimidine CsdA: GDP protocatechuate sn-glycerol 3-phosphate carrier protein]- IX92_RS10110 α Ile2 an aromatic adenosyl- dependent: synthetase: IX92_RS04260 hexadec-7- in tRNA a mature GlcNAc-1,6- terminal -L- in tRNA IX92_RS19895 ABC efflux FabZ: [scaffold protein- bifunctional deaminase/5-amino-6-(5-phosphoribosylamino) IX92_RS12145 cysteine synthase ribazoletransferase: phosphatidylglycerophosphatase dehydrogenase chitin derivatives degradation MnmG: IX92_RS00005 a single-stranded a [protein]-FMN- 2-oxo-acid D-glyceraldehyde cobinamide enoyl-[acp] phosphogluconate (1,4)-β-D-xylan acetate-- a ribonucleoside L-cysteine sn-glycerol peptidoglycan anhMurNAc- glutamate-α- DHAP thiol transporter thiol a [ThiI sulfur- a carboxy- desulfurase: adenylyltransferase IX92_RS23010 IX92_RS23010 beta-ketoacyl- A: IX92_RS11925 E1 component: glycogen degradation II muropeptide degradation a L-methionylaminoacyl- ser (n) an N-terminal L- a reduced IX92_RS11850 (2Fe-2S)] complex demethylmenaquinone uracil reductase RibD: IX92_RS11955 AIR SAM 3-phosphate GTP IX92_RS06310 3-oxoacyl- dehydrogenase anaerobic glycerol-3- 5'-monophosphate oligodeoxyribonucleotide formate 3-phosphate γ AMP L-threonine formate L-glutamate of a thiol MoeB: IX92_RS20855 phosphate Coα-[α-(2- [acyl-carrier- degradation CoA ligase: (meso-DAP L-Ala- -D-Glu- α methionyl-[protein] ammonium CO a (2E)- methyltransferase/2- 5-amino-6-(5- carrier protein]-S- adenylated-[ThiS IX92_RS02260 an L-1- IX92_RS03220 N,N'- 3-carboxy-cis phosphate dehydrogenase: tRNA ADP- -D-glucose 2 H O c-type tyr 1-deoxy-D- NAD + ACP (NADP(+)- γ a 5-aminomethyl-2- containing) DAP-D-Ala 2 group phospho-D- sulfanyl-L-cysteine sulfur-carrier protein] bifunctional methyladenin-9-yl)]-Co protein] phosphatidyl- diacetylchitobiose a glycogen L-alanyl- -D- IX92_RS14930 a 7,8-dihydrofolate cytochrome enoylpimeloyl- methoxy-6-polyprenyl-1,4- folate transformations III (E. coli) cysteine molybdopterin- reductase [+ 2 isozymes] β ,cis-muconate IX92_RS19825 thiouridine 34 in tRNA RS07500 an oxidized xylulose-5- GTP 3',8- adenosylcobinamide β-adenosylcobamide synthase I: dependent, a (1->4)- -D-xylan glutamyl-meso-2,6- ala RS09785 ala [acp] methyl ester benzoquinol methylase ribosylamino)uracil phosphomethylpyrimidine desulfurase synthase FabG: fabG sn-glycerol IX92_RS19835 acetyl-CoA O c-type 2-iminoacetate phosphate cyclase 5'-phosphate decarboxylating) xylanase: glycogen/starch/ diaminopimeloyl- 2 UbiE: IX92_RS00315 D-ribulose bifunctional synthase ThiC: adenylyltransferase: kinase/ IX92_RS03625 a (3R,7Z)-3- a reduced a [chaperone- synthase ThiH: CsdA: alpha-ribazole : IX92_RS18780 IX92_RS19670 glycerol-3-phosphate cytochrome an [2Fe-2S] a tetrahydrofolate 5-phosphate diaminohydroxyphosphoribosylaminopyrimidine IX92_RS00180 synthase: MoaA: moaA adenosylcobinamide- 2-oxoisovalerate decarboxylation to isobutanoyl-CoA a (1->4)-β-D-xylan alpha-glucan D-alanine a methylated a Chi-site containing ADP]-[disordered- IX92_RS12145 IX92_RS00190 (8S)-3',8-cyclo-7,8- a 3-oxooctanoyl- hydroxy-hexadec- + H O c-type IX92_RS00205 IX92_RS03270 phosphatase: N,N'- LD- (2-carboxy- dehydrogenase: methylmalonate semialdehyde 2-oxoglutarate sulfite GSSH 2-oxoglutarate H O malonyl-CoA H L-cysteate 4-hydroxy- ADP-D-ribose NADH carbonic acid 2 cluster protein menaquinol-8 phosphate phosphogluconate phosphorylase: nucleobase double stranded RecA a PII protein 2 a type IV prepilin ser cytochrome form scaffold deaminase/5-amino-6-(5-phosphoribosylamino) an [L-cysteine a carboxy-adenylated dihydroguanosine [acp] 7-enoyl-[acp] oligosaccharide ATP dGTP GTP cytochrome 3,4-dihydroxy- a thiocarboxy- guanylyltransferase: thiamine diphosphate salvage IV (yeast) IX92_RS06320 an [apo BCAA diacetylchitobiose IX92_RS16675 carboxypeptidase: 2,5-dihydro- IX92_RS19895 within DNA a tRNA precursor UTP aspartate/ L-threonine an oxidized ala RS12210 ala a pimeloyl-[acp] protein] complex uracil reductase RibD: IX92_RS11955 1-deoxy-D-xylulose desulfurase]-S- [small subunit of α α 3-hydroxyacyl- dehydrogenase DNA with a blunt end c oxidase 2-butanone- 5-amino-6-(5- HMP-P 2-iminoacetate [ThiS-Protein] 5'-triphosphate Co -[ -(2- 3-oxoacyl- gondoate biosynthesis dehydrogenase IX92_RS05995 5-oxofuran- CTP L-serine O c-type methyl ester 5-phosphate sulfanyl-L-cysteine molybdopterin synthase] IX92_RS06315 (NADP(+)- N,N'- DHAP tyrosine/aromatic ADP-ribose 2 non-chaperonin cyclic pyranopterin methyladenin-7-yl)]-Co [acyl-carrier- 6 an α-limit dextrin NAD(+) ammonia-lyase: methionine 4-phosphate phospho-D- ACP stearate biosynthesis (anaerobic) E2 protein] N diacetylchitobiose 2-yl)-acetate methylmalonate- rhodanese domain- 2-oxoglutarate type III aminotransferase: carbonate cytochromea reduced adenosylcobinamide- thiamine β protein] alpha-ketoacid dependent, LD- alpha- exodeoxyribonuclease bifunctional prepilin low-specificity diphosphatase: pimeloyl-[acyl- molecular synthase: synthase: bifunctional monophosphate -adenosylcobamide II (bacteria and plants) -lipoyl-L-lysine carboxymuconolactone semialdehyde containing protein: dehydrogenase ribosome polyketide diphosphatase: dehydratase: IX92_RS05510 H O cytochrome- c-type ribitylamino)uracil thiazole reductase dehydrogenase decarboxylating) phosphorylase: β-D-xylopyranose 4-alpha- carboxypeptidase: ketoglutarate- multifunctional dGTPase: IX92_RS05460 L-threonine 2 ala RS08665 ala carrier protein] chaperone IX92_RS08490 hydroxymethylpyrimidine synthase MoaC: GDP dehydratase dihydrolipoyl decarboxylase: V: IX92_RS02695 IX92_RS18375 uridylyltransferase/ biogenesis peptidase: synthase: IX92_RS12450 IX92_RS13940 IX92_RS12855 L-serine cytochrome IX92_RS01020 synthase: FabG: fabG subunit beta: : IX92_RS22465 IX92_RS12745 glucanotransferase: IX92_RS16700 dehydrogenase (CoA dependent CCA addition/ IX92_RS04380 E1 component: c oxidase, an oxidized ATPase: tetrahydromonapterin kinase/ IX92_RS10570 FabZ: a malonyl-[acp] an oleoyl-[acp] IX92_RS02700 uridylyl-removing GTPase Der: IX92_RS02340 IX92_RS07225 aspartate/ aldolase: methyl ester [+ 2 isozymes] IX92_RS00200 thiaminase II: [+ 2 isozymes] a palmitoyl-[acp] dehydrogenase: IX92_RS21155 L-alanyl-γ-D- IX92_RS24625 acylating): IX92_RS09010 thiosulfate IX92_RS03220 [+ 2 isozymes] ammonia-lyase: O cbb3-type c-type a thiocarboxylated D-ribulose IX92_RS16680 dioxygenase repair protein: dGTPase: IX92_RS21495 2 esterase: IX92_RS02280 1-deoxy-L- biosynthesis phosphomethylpyrimidine coenzyme A biosynthesis I (prokaryotic) IX92_RS24455 IX92_RS11850 IX92_RS14195 N-acetyl-D- (4,5-dihydro- IX92_RS02705 protein GlnD: IX92_RS02770 [+ 3 isozymes] tyrosine/aromatic D-ribofuranose reduced β- IX92_RS21550 cyclic pyranopterin a (3R)-3- beta-ketoacyl- a debranched glutamyl-meso- chitin degradation II (Vibrio) methylmalonate- AlkB: IX92_RS01835 sulfurtransferase 2-oxoglutarate a sugar cytochrome an [Fe-S cluster kinase: IX92_RS24475 [small subunit of thiamine diphosphate a (2E,7Z)- 5-phosphate glucosamine 5-oxofuran- IX92_RS05815 IX92_RS11915 aminotransferase: 5-phosphate RS21675 a sugar IX92_RS15535 glycero-tetrulose ARP 2-[(2R,5Z)-2-carboxy- phosphate hydroxyoctanoyl- dihydrolipoyl diaminopimelate semialdehyde GlpE: IX92_RS00875 dehydrogenase: [+ 7 isozymes] AMP nicotinamide D- pyruvate biosynthesis (R)-4'- molybdopterin synthase] hexadeca-2,7- [acyl-carrier- beta-ketoacyl- N-acetyl-α-D- α-limit dextrin 2-yl)-acetate IX92_RS22500 IX92_RS19790 AMP dihydrofolate 4-phosphate 4-methylthiazol-5(2H)- 4-amino-2-methyl-5- 5-(2-hydroxyethyl) biosynthesis II (Bacillus) a double stranded DNA octoketide ribonucleotide CO H O GTP HMP-PP [acp] protein] [acyl-carrier- dehydrogenase: N-acetylglucosamine chitin dehydrogenase (CoA IX92_RS18730 a cleaved type glycolaldehyde 2 2 a pimeloyl-[acp] chaperone]-ATP reductase: phosphopantothenate heme a biosynthesis pyrimidinemethanol -4-methylthiazole dienoyl-[acp] ribulose- ribose-5- glucosamine with a RecA protein a tRNA 3-sulfopyruvate gly ylidene]ethyl phosphate bifunctional molybdopterin 2-(2-carboxy-4- 3-hydroxyacyl- IX92_RS12870an [apo BCAA acylating): IX92_RS21215 H + a peptide GTP synthase II: protein] synthase an [apo BCAA dehydrogenase phosphate 3- phosphate 1-phosphate kinase: glycogen/starch/ a nucleobase containing a triphosphate a uridylylated phosphate IV prepilin IX92_RS23375 6,7-dimethyl-8- bifunctional methylthiazol-5- dehydrogenase chitinase: formaldehyde succinate loaded 3' overhang 2'-deoxyguanosine glutathione thiosulfate GDP a sugar RS16110 a sugar phosphopantothenoylcysteine synthase: HMP-PP [acyl-carrier- IX92_RS04260 I: IX92_RS03625 E2 protein] N 6 -S-[2- IX92_RS02095 alpha-glucan PII protein glycine cleavage cyclohydrolase 6 epimerase: isomerase RpiA: L-alanyl-D- within DNA 3' CCA end 8-amino-7- ribityllumazine thiamine decarboxylase/ protoheme hydroxymethylpyrimidine yl)ethyl phosphate protein] E2 protein] N chitobiose IX92_RS04390 CO NADH succinyl-CoA IX92_RS10560 methylpropanoyl]dihydrolipoyl- phosphorylase: 2 oxononanoate system protein synthase: I FolE: beta-ketoacyl- beta-ketoacyl- IX92_RS14130 IX92_RS01680 [+ 2 isozymes] 6'-phosphate D-glucopyranose glutamate 3-oxoadipate a 7,8-dihydrofolate a 5-methyltetrahydrofolate phosphate phosphopantothenate--cysteine IX92_RS10565 protoheme IX kinase/ dehydratase -dihydrolipoyl- [+ 4 isozymes] hydrogencarbonate NADH propanoyl-CoA H + 5-hydroxybenzimidazolyl R: IX92_RS11000 IX92_RS20845 4-methyl-5-(2- a (7Z)-hexadec- [acyl-carrier- [acyl-carrier- L-lysine IX92_RS16675 synthase: serine IX92_RS11940 synthase: ligase CoaBC: IX92_RS15410 farnesyltransferase: phosphomethylpyrimidine thiamine FabZ: L-lysine L-Ala-D/L-Glu adenosylcobamide biosynthesis [+ 2 isozymes] (R)-4'- phosphooxyethyl) 7-enoyl-[acp] protein] protein] D-xylulose D-ribose 5- N-acetyl-D- a chitodextrin a sugar RS22280 a sugar IX92_RS09630 hydroxymethyltransferase: glyA GTP IX92_RS08680 IX92_RS16390 kinase: IX92_RS24475 phosphate IX92_RS11850 α epimerase: phosphopantothenoyl- thiazole 5-phosphate phosphate glucosamine -D- 8-amino-7- from adenosylcobinamide-GDP 6,7-dimethyl-8-(1- cyclohydrolase molybdopterin synthase: beta-ketoacyl- synthase I: synthase II: IX92_RS22665 serine thiamine protoheme IX glucopyranose a mature peptidoglycan a thiocarboxylated cyclic 10 2445 a [lipoyl-carrier thymidylate L-cysteine thiamine a (2E)-oct- IX92_RS03625 IX92_RS04260 6-phosphate quinoxaline-2- an N - a guanine a ribonucleoside a UDP-sugar a phosphate oxononanoate D-ribityl)lumazine I FolE: HMP-P IX92_RS08680 [acyl-carrier- D-glucosamine L-alanyl-L- coenzyme A an apo [peptidyl- 2-oxoadipate a peptide with an 6 formate 5-hydroxybenzimidazole NaMN hydroxymethyltransferase: glyA phosphate farnesyltransferase: phosphate a 3-oxooctadecanoyl- 1-phosphate (meso-diaminopimelate aryl-carrier protein carboxyl adenylate [SAMP] C- pyranopterin glu a (6S)-5- formyltetrahydrofolate in 23S rRNA formate L-cystathionine asp protein]-N -[(R) UTP cys synthase: 7,8- IX92_RS10470 bifunctional 2-enoyl-[acp] protein] 2-oxo acid transketolase: carrier protein] triphosphate N-terminal L-lysine monoester predicted adenosylmethionine- riboflavin synthase: IX92_RS23160 synthase: thiamine [acp] N-acetylglucosamine- glutamate containing) terminal glycine phosphate formyltetrahydrofolate bifunctional -dihydrolipoyl]- IX92_RS02015 dihydroneopterin phosphopantothenoylcysteine bifunctional dehydrogenase IX92_RS20895 bifunctional aspartate/ alkaline cysteine ABC -8-amino-7- synthase: IX92_RS00185 ferroheme o phosphate synthase I: an (11Z)-3-oxo- 6-phosphate glucosamine phosphoglucomutase a chitodextrin L-lysine nicotinate-nucleotide-- 3'-triphosphate decarboxylase/ hydroxymethylpyrimidine IX92_RS08680 3-oxoacyl- Glycolysis subunit E2: transketolase: 23S rRNA tyrosine/aromatic dihydrolipoyl phosphatase: desulfhydrase:a sugar a sugar oxononanoate IX92_RS07765 molybdopterin IX92_RS03625 icos-11-enoyl-[acp] (alpha-D-glucose- formyltetrahydrofolate 2-oxoglutarate UDP-sugar anaerobic transporter dihydroneopterin phosphopantothenate--cysteine kinase/ thiamine synthase: ACP IX92_RS21160 deacetylase: kinase: murein acyl carrier holo-ACP molybdopterin bifunctional (guanine(2069)-N(7) anaerobic cystathionine dehydrogenase: IX92_RS10225 tnaA dimethylbenzimidazole [+ 2 isozymes] adenine dinucleotide IX92_RS13255 1,6-bisphosphate- deformylase: dehydrogenase aminopeptidase hydrolase/5'- aminotransferase: ribonucleoside- of a sugar transaminase: a (6S)-5- triphosphate ligase CoaBC: IX92_RS15410 heme A synthase: phosphomethylpyrimidine IX92_RS00185 beta-ketoacyl- 3-oxoacyl-ACP IX92_RS03135 IX92_RS12735 protein: synthase: synthase tetrahydrofolate )-methyltransferase ribonucleoside- beta-lyase: IX92_RS12870 phosphoribosyltransferase: phosphate reductase glycolysis I (from glucose 6-phosphate) transglycosylase: IX92_RS04160 E1 component: Y: IX92_RS22785 nucleotidase: IX92_RS05460 triphosphate alkaline cysteine IX92_RS09640 formyltetrahydrofolate thiamine phosphate IX92_RS23165 [acyl-carrier- dependent): IX92_RS01790 RlmK/23S rRNA triphosphate IX92_RS06305 riboflavin 2'-epimerase: bifunctional kinase: IX92_RS24475 synthase: an octanoyl-[acp] FabG: fabG reductase D-sedoheptulose D-glyceraldehyde IX92_RS02150 IX92_RS04255 catalytic synthase/ IX92_RS09395 dihydrolipoyl phosphatase: 4'-phosphopantetheine protein] IX92_RS03180 glu ala formyltetrahydrofolate IX92_RS03220 ushA aspartate/ reductase: desulfhydrase: predicted 7,8- methylenetetrahydrofolate 5-formyltetrahydrofolate IX92_RS10465 molybdopterin- IX92_RS00185 thiamine FabG: fabG D-glucosamine chitodextrinase: [+ 3 isozymes] [+ 2 isozymes] subunit MoaE: dihydrofolate (guanine(2445)-N(2) reductase: dehydrogenase: thiamine- ferroheme i [+ 2 isozymes] D-glucopyranose 7-phosphate 3-phosphate [+ 7 isozymes] deformylase: tyrosine/aromatic IX92_RS19780 IX92_RS16420 tnaA ABC diaminopelargonate reductase: IX92_RS15125 methylenetetrahydrofolate cyclo-ligase: bifunctional 7,8- guanine dinucleotide HMP-PP phosphate beta-ketoacyl- synthase II: 6-phosphate [+ 2 isozymes] IX92_RS23470 IX92_RS10560 synthase: 2-oxoglutarate )-methyltransferase IX92_RS19780 a [lipoyl-carrier a sugar a sugar 5-hydroxybenzimidazole phosphate pantetheine- a (3R)-3- a (3R,11Z)-3-hydroxy- 6-phosphate beta-N- IX92_RS14195 an alcohol pyruvate transporter dihydromonapterin thiamine IX92_RS04260 IX92_RS21380 dehydrogenase: an α-D-aldose aminotransferase: 6 dehydrogenase: IX92_RS01685 riboflavin kinase/ biosynthesis [acyl-carrier- IX92_RS03655 2 RlmL: IX92_RS06875 pyruvate lys a peptide UMP protein]-N - ATP-dependent ribotide phosphate kinase: phosphate heme A synthase: thiamine- hydroxyoctadecanoyl- icos-11-enoyl-[acp] transaldolase: acetylhexosaminidase: a mature peptidoglycan a mature peptidoglycan a quinoxaline-2- a holo [peptidyl- an N - L-homocysteine of a sugar IX92_RS03920 triphosphate phosphate a (9Z)-3-oxo- glucose-6- D-glucopyranose 3',5'-ADP IX92_RS18730 1-phosphate IX92_RS19790 dethiobiotin a 5,10- a 5,10- FAD synthetase: adaptor protein protein] [acp] IX92_RS20890 2445 a 2'- lipoyl-L-lysine dUTP adenosylcobinamide- IX92_RS11930 adenylyltransferase: IX92_RS23165 phosphate octadec-9- IX92_RS02110 with (L-alanyl-γ-D- strand (non- carboxyl-[aryl- carrier protein] a [SAMP] C- methylguanine oxaloacetate IX92_RS02050 MobB/molybdopterin synthase II: 3-hydroxyacyl- phosphate 6-phosphate AMP molybdopterin synthetase BioD: methylenetetrahydrofolate methenyltetrahydrofolate NAD salvage IX92_RS15380 kinase: 3-hydroxyacyl- α-D-glucosamine [+ 4 isozymes] glutamyl-meso-2,6- reducing terminus) carrier protein] in 23S rRNA deoxyribonucleoside a sugar RS06975 a sugar GDP ribazoletransferase: 5-methoxy-6-methylbenzimidazolyl enoyl-[acp] [acyl-carrier- isomerase: N,N'- N,N',N''- terminal glycine a (6S)-5- formate a tetrahydrofolate IX92_RS09620 pathway III (to thiamine diphosphate molybdotransferase hydroxyferroheme i IX92_RS11930 IX92_RS04260 [acyl-carrier- D-erythrose 5'-triphosphate IX92_RS06310 bifunctional FMN adenosylcobamide biosynthesis 3'-dephospho- 5-methylbenzimidazolyl 3-oxoacyl- F6P 6-phosphate diacetylchitobiose triacetylchitotriose diaminopimeloyl-D- formyltetrahydrofolate CO glutaryl-CoA NADH MoeA: IX92_RS07695 protein] protein] IX92_RS13680 4-phosphate 2 methylenetetrahydrofolate nicotinamide riboside) D-threo-7,8- from adenosylcobinamide-GDP CoA adenosylcobamide biosynthesis thiamine beta-ketoacyl- ACP alanine) tetrapeptide dethiobiotin Coα-[α-(5-hydroxybenzimidazolyl)]- thiamine dehydratase dehydratase glucosamine- beta-N- dehydrogenase/ NADP + bifunctional dihydroneopterin 5-methoxy-6- molybdopterin from adenosylcobinamide-GDP diphosphate [acyl-carrier- reductase transketolase: Coβ-adenosylcobamide 5'-phosphate dephospho- FabZ: FabZ: F6P 6-phosphate acetylhexosaminidase: a sugar RS07795 a sugar biotin 5-methoxybenzimidazolyl benzimidazolyl adenosylcobamide methenyltetrahydrofolate riboflavin kinase/ dihydromonapterin methylbenzimidazole molybdotransferase: protein] FabG: fabG IX92_RS20895 nicotinate-nucleotide-- CoA kinase: 5-methylbenzimidazole IX92_RS11850 IX92_RS11850 deaminase: IX92_RS03110 a ring-opened 7- an N-terminal trimethylamine a 2'- a peptidoglycan a guanine 2069 RNase II poly-A D-sedoheptulose alpha-ribazole adenosylcobamide biosynthesis biosynthesis from cyclohydrolase FAD synthetase: IX92_RS20850 synthase I: a (3R,9Z)-3- transketolase: an L-phenylalanyl- coenzyme A AsbD acyl- a reduced c- glycerophosphoglycerol O-succinyl-L- an N-acyl- N-acetyl-L- phenyl acetate synthase BioB: reductase: dimethylbenzimidazole IX92_RS12945 IX92_RS17400 methylguanine deoxyribonucleoside dimer (E. faeciums) triphosphate L-saccharopine 1,7-bisphosphate phosphatase: menaquinol-7 biosynthesis ferroheme a nicotinate-nucleotide-- IX92_RS03625 a (2E,11Z)-icosa- [+ 5 isozymes] arginyl-[protein] [tRNA Phe ] type cytochrome N-oxide [DNA] in 23S rRNA homoserine substrate mRNA GTP IX92_RS09635 from adenosylcobinamide-GDP adenosylcobinamide-GDP FolD: IX92_RS03920 + IX92_RS02050 IX92_RS10475 MoO -molybdopterin hydroxy-octadec- a (2E)-octadec- fructose- IX92_RS13255 carrier protein L-aspartate aspartate NAD phosphoribosyltransferase: folate polyglutamylation 2 in DNA 5'-triphosphate bifunctional IX92_RS06320 coenzyme A dimethylbenzimidazole thiamine 9-enoyl-[acp] 2,11-dienoyl-[acp] bisphosphatase 6-phosphofructokinase: F6P N-acetyl-D- anaerobic a sugar RS03955 a sugar 5-methoxybenzimidazole benzimidazole 5,6,7,8- cofactor a 3-oxodecanoyl- 2-enoyl-[acp] D-glyceraldehyde biotin an N 10 -formyltetrahydrofolate FAD all-trans- 5-methoxy-6-IX92_RS06305 phosphoribosyltransferase: bis(guanylyl molybdenum glucosamine serine-type 23S rRNA Coα-[α-(5-hydroxybenzimidazolyl) nicotinate-nucleotide-- NAD(+) diphosphate 3-hydroxyacyl- class II: IX92_RS14085 3-phosphate glycerophosphodiester inorganic fructose- ribonucleoside- nicotinate-nucleotide-- tetrahydromonapterin heptaprenyl 1,4-dihydroxy- methylbenzimidazole IX92_RS06305 cofactor) biosynthesis [acp] bifunctional DNA- leucyl/ holo-ACP trimethylamine- DNA polymerase D-Ala-D-Ala (guanine(2069)-N(7) cystathionine exoribonuclease saccharopine arylesterase: ]-Coβ-adenosylcobamide a tetrahydrofolate [acyl-carrier- IX92_RS15135 phosphodiesterase: aspartoacylase: bisphosphate aspartoacylase: triphosphate dimethylbenzimidazole dimethylbenzimidazole diphosphatase: diphosphate 2-naphthoate ribotide phosphate 5-methylbenzimidazole phenylalanyl- synthase: N-oxide III subunit )-methyltransferase gamma- triphosphatase: II: IX92_RS22265 dehydrogenase: IX92_RS19955 MoO - 3-oxoacyl- protein] Detoxification formamidopyrimidine IX92_RS01665 carboxypeptidase: IX92_RS23465 aldolase: IX92_RS23465 reductase: phosphoribosyltransferase: phosphoribosyltransferase: IX92_RS13940 ribotide phosphate 2 tRNA--protein IX92_RS01865 adenosylcobinamide- glutathione molybdopterin fructose- β-D-fructose 1,6- glycosylase/ IX92_RS01790 reductase TorA: gamma/tau: IX92_RS12650 RlmK/23S rRNA synthase: IX92_RS08260 a sugar RS18540 a sugar IX92_RS06305 IX92_RS06305 molybdopterin ACP dehydratase glycerophosphodiester IX92_RS08925 IX92_RS19780 1,4-dihydroxy- GDP bifunctional serine formate-- biosynthesis adenosylcobinamide- bisphosphate bisphosphate DNA-(apurinic or transferase: [+ 2 isozymes] IX92_RS09925 IX92_RS03905 (guanine(2445)-N(2) IX92_RS15115 RNase II 5-methoxybenzimidazole benzimidazole NMN cofactor reductase FabZ: a stearoyl-[acp] a gondoyl-[acp] reactive oxygen species degradation phosphodiesterase: thioredoxin glutathione- 2-naphthoate ribazoletransferase: tetrahydrofolate hydroxymethyltransferase: glyA tetrahydrofolate GDP aldolase: Carbohydrate Degradation 8-oxo-(d)GTP detoxification I IX92_RS10135 )-methyltransferase acetate phenol dGTP lipoate biosynthesis ribotide phosphate ribotide phosphate thiamine FabG: fabG IX92_RS11850 apyrimidinic site) [+ 9 isozymes] a peptidoglycan substrate with glutathione- pathway glutaredoxin polyprenyltransferase: synthase/ serine ligase: IX92_RS08925 IX92_RS23915 RlmL: IX92_RS06875 a carboxylate phosphate diphosphate AMP allysine D-erythrose acetate and incorporation I bifunctional IX92_RS06310 glu ribazoletransferase: bis(molybdenum lyase: IX92_RS15385 7 asp no poly-A tail glu DHAP asp diphosphate cys [+ 2 isozymes] a (2E,9Z)- 3',5'-ADP a holo-[AsbD acyl- tetramer with a D-ala an N - D-ribose RS16105 D-ribose peroxide adenosylcobinamide- adenosylcobinamide- metallophosphatase/ redox reactions IX92_RS14060 Coα-[α-(5-methoxy-6- dihydrofolate hydroxymethyltransferase: glyA IX92_RS19450 IX92_RS06310 cofactor) class II fructose- D-galactose degradation I (Leloir pathway) superoxide L-phenylalanyl-L- an oxidized c- trimethylamine succinate 4-phosphate salvage I a (3R)-3- octadeca-2,9- carrier protein] D,D cross-link methylguanine 2069 L-homocysteine redox reactions GDP GDP an oxidized methylbenzimidazolyl)]- synthase: Coα-[α-(5- ribose lactose degradation II trehalose degradation a tRNA Phe type cytochrome 5'-nucleotidase: glutathione synthase: hydroxydecanoyl- dienoyl-[acp] bisphosphate dGTP GTP 2,6-diamino-4- arginyl-[protein] sn-glycerol [DNA] an octanoyl-[acp] ribazoletransferase: ribazoletransferase: thiamine thioredoxin β 10 I (low osmolarity) superoxide dismutase a 5'-phospho- a 3'-phospho- glycerol (Enterococcus in 23S rRNA IX92_RS20080 Co -adenosylcobamide IX92_RS03655 a 5,10- an N - glutamate-- methylbenzimidazolyl)]- IX92_RS07690 DHAP aldolase: β phosphorylation 4-oxo-2-pentenal lipoyl(octanoyl) GSSG demethylmenaquinol-7 [acp] stearate fatty acid elongation -- saturated -D-galactopyranose [Fe]: IX92_RS10440 [DNA] [DNA] hydroxy-5-(N-methyl) 3-phosphate faecium) IX92_RS06310 IX92_RS06310 thiamine kinase: 5'-phosphate methylenetetrahydrofolate formyltetrahydrofolate cysteine ligase: Coβ-adenosylcobamide IX92_RS13240 α α,α-trehalose predicted transferase LipB: α α α α [+ 2 isozymes] bifunctional 3- β -lactose formamidopyrimidine Co -[ -(5- Co -[ -(benzimidazolyl) IX92_RS04855 β alpha-ribazole 5'-phosphate galactose-1- -D-ribopyranose 6-phosphate superoxide dismutase: ABC a [lipoyl-carrierIX92_RS11630 β 1-( -D bifunctional bifunctional bifunctional IX92_RS01365 bis(molybdenum hydroxydecanoyl- long-chain 8-oxo-dGTP D-ribose D-ribose methoxybenzimidazolyl) ]-Co -adenosylcobamide thiamine thioredoxin- a reduced phosphatase: a tetrahydrofolate alpha-ribazole epimerase: D-ribose IX92_RS14110 8-oxo-GTP 6 ribofuranosyl) tetrahydrofolate cofactor) fatty acid-- triose-phosphate transporter protein] N - ]-Coβ-adenosylcobamide 5'-phosphate glutaredoxin demethylmenaquinone tetrahydrofolate ACP dehydratase/ an oleoyl-[acp] an acetoacetyl-[acp] pyranase: a 7,8-dihydro- a 2'- L-alanyl-γ-D- α glutathione- phosphate nicotinamide disulfide IX92_RS06320 γ phosphatase: isomerase: galM alpha,alpha- an N-terminal an apo-[LYS2 L- sn-glycero-3- D-sedoheptulose -Kdo8N- of D-ribose octanoyl-L-lysine methyltransferase/2- Coα-[α-(5-methoxy-6- synthase/ synthase/ -L-glutamyl- molybdenum cofactor trans-2-decenoyl- CoA ligase: 3'-ketolactose hydrogen peroxide 8-oxo-dGTP an L-phenylalanyl- coenzyme A coenzyme A [EntB aryl- FMN NAD(P)H H + MoO - acetyl-CoA succinyl-CoA formate disulfide 5'-phosphate alpha-ribazole reductase: IX92_RS22320 8-oxoguanine deoxyribonucleoside glutamyl-L-lysyl- 2 γ-L-glutamyl- glutaredoxin: IX92_RS06320 IX92_RS14045 phosphotrehalase: Phe 2-aminoadipyl- a tRNA precursor gly 1-phosphate glu ala (2->6)-lipid IV thiamine- methoxy-6-polyprenyl-1,4- dihydrofolate dihydrofolate L-cysteine α α guanylyltransferase ACP isomerase: IX92_RS01650 α β diphosphatase L-lysyl-[protein] [tRNA ] carrier protein] phosphoethanolamine [DNA] ATP CTP A ATP lipoyl synthase: alpha-ribazole phosphatase: methyl-benzimidazolyl)]- Co -[ -(5- -D-galactopyranose -D-ribofuranose in DNA 5'-triphosphate D-alanyl-D-alanine molybdopterin D-alanine 3-deoxy- + + reductase: IX92_RS05390 IX92_RS06390 demethylmenaquinol- beta- IX92_RS11690 carrier-protein] Na RS12015 Na IX92_RS11635 phosphatase: phosphate benzoquinol methylase Coβ-adenosylcobamide synthase: synthase: glutathione methylbenzimidazolyl)]- MobA: IX92_RS07690 IX92_RS06900 [+ 2 isozymes] MutT: cofactor anaerobic IX92_RS00520 IX92_RS06320 [+ 3 isozymes] galactosidase: catalase/peroxidase D-manno- IX92_RS06320 kinase: UbiE: IX92_RS00315 IX92_RS03655 IX92_RS03655 synthase: Coβ-adenosylcobamide 9 biosynthesis bis(guanylyl D-glyceraldehyde galactokinase: IX92_RS12265 8-oxo-GMP glycerophosphodiester flavin reductase: 3-oxoadipyl- anaerobic fructose- ribonucleoside- a [lipoyl-carrier Coα-[α-(benzimidazolyl) a protein with demethylmenaquinol- 3-hydroxyacyl- lacZ D-glucopyranose leucyl/ holo-ACP holo-ACP octulosonic α α IX92_RS11930 10 stearoyl-CoA HPI: IX92_RS18425 bifunctional DNA- DNA polymerase serine-type glutathione glutamate-- 6 Co -[ -(5- menaquinol-9 biosynthesis a 5,10- an N - IX92_RS13285 all-trans- molybdopterin) 3-phosphate IX92_RS02475 D-glucopyranose phosphodiesterase: IX92_RS18030 ribonuclease D: CoA thiolase: ribonucleoside- bisphosphate triphosphate protein]-N -[(R) ]-Coβ-adenosylcobamide a reduced reduced L- 6 biosynthesis I [acyl-carrier- a 3-oxoacyl-[acp] 3-keto-β-D- 6-phosphate 8-oxo-dGMP phenylalanyl- synthase: synthase: molybdenum cofactor acid kinase: methoxybenzimidazolyl) thiamine menaquinol-7 nonaprenyl 1,4-dihydroxy- cofactor formamidopyrimidine III subunit D-Ala-D-Ala IX92_RS04200 IX92_RS27450 synthase: aldolase: cysteine ligase: -dihydrolipoyl]- thioredoxin cysteine residues methylenetetrahydrofolate formyltetrahydrofolate protein] palmitoleate biosynthesis I H O hydroxyl radical tRNA--protein IX92_RS01790 IX92_RS01790 IX92_RS23915 NAD(P)H-flavin guanylyltransferase triphosphate IX92_RS15360 reductase: NADH:ubiquinone glutathione all-trans- glutathione 2-naphthoate glyceraldehyde- α-D-galactose D-ribofuranose galactose 2 glycosylase/ gamma/tau: carboxypeptidase: IX92_RS13285 IX92_RS01365 ]-Coβ-adenosylcobamide diphosphate diphosphate menaquinol-6 biosynthesis O IX92_RS08925 4-O-phospho- + + L-lysine guanylyl molybdenum demethylmenaquinol-9 acyl carrier dehydratase (from (5Z)-dodec-5-enoate) UDP-α-D-glucose 2 glycerophosphodiester reductase: reductase: IX92_RS19780 Na reductase (Na(+) Na hexaprenyl 1,4-dihydroxy- 3-phosphate 1-phosphate DNA-(apurinic or transferase: [+ 2 isozymes] [+ 2 isozymes] IX92_RS03905 IX92_RS12650 MobA: IX92_RS07690 α beta-ketoacyl- IX92_RS00640 IX92_RS19780 -Kdo8N- -transporting) cofactor biosynthesis bifunctional protein activation diphosphate 2-naphthoate FabZ: dehydrogenase: ribokinase: IX92_RS10135 phosphodiesterase: dATP 1,4-dihydroxy- a (5Z)-dodec- [acyl-carrier- apyrimidinic site) [+ 11 isozymes] a nucleoside 5'- 3-oxoadipyl-CoA γ (2->6)-lipid IV demethylmenaquinol-6 IX92_RS22300 IX92_RS01665 -L-glutamyl- A MoO - demethylmenaquinone 2-naphthoate IX92_RS11850 3-ketoacyl-ACP IX92_RS13250 lyase: IX92_RS15385 a holo-[LYS2 L- γ adenylyl a tRNA norophthalmate D-erythrose 2 an apo acyl- 5-enoyl-[acp] protein] synthase a holo-[EntB aryl- L-alanyl- -D- monophosphate DHAP D-alanine molybdopterin methyltransferase/2- 1,4-dihydroxy- bifunctional beta-ketoacyl- D-ribofuranose D-galactopyranose D-mannose 3',5'-ADP 2-aminoadipyl- 3',5'-ADP molybdenum + + polyprenyltransferase: reductase: Carboxylate Degradation L-phenylalanyl- glutamyl-L- + dCTP Na RS18220 Na carrier protein a (2E)-dec- I: IX92_RS03625 Phe carrier protein] D-ala FMNH NAD(P) methoxy-6-polyprenyl-1,4- demethylmenaquinone degradation a tRNA carrier-protein] 2 cofactor molybdenum cofactor 4'-phosphopantetheinyl 2-naphthoate IX92_RS14060 [acyl-carrier- IX92_RS27305 13-DPG 5-phosphate L-lysyl-[protein] [DNA] lysyl-D-alanine cofactor 2-enoyl-[acp] beta-ketoacyl- Macromolecule Modification a 3'-phospho- ethanolamine sn-glycerol guanylyltransferase benzoquinol methylase transferase: polyprenyltransferase: methyltransferase/2- protein] D-mannopyranose a 5'-phospho- 7,8-dihydro- 4-oxo-2-pentenal [acyl-carrier- [+ 2 isozymes] 2-methylcitrate cycle II 3-phosphate guanylyl MobA: IX92_RS07690 UbiE: IX92_RS00315 IX92_RS07945 IX92_RS14060 methoxy-6-polyprenyl-1,4- synthase I: pyruvate fermentation D-gluconate [DNA] [DNA] 8-oxoguanine 6-phosphate glycolate and superpathway of acetate Co 2+ Co 2+ molybdenum menaquinol-9 demethylmenaquinol-9 benzoquinol methylase protein] phosphoglycerate tRNA-uridine 2-thiolation mannose-6- RS11565 [+ 2 isozymes] IX92_RS03625 to acetate II degradation glyoxylate utilization and formation 2+ 2+ a holo acyl- a 2,3,4-saturatedsynthase II: a (3R)-3-hydroxyacyl- phosphate Mg Mg cofactor UbiE: IX92_RS00315 kinase: and selenation (bacteria) queuosine propanoate degradation I N-acetyl-D- carrier protein demethylmenaquinol-6 beta-ketoacyl- fatty acyl-[acp]IX92_RS04260 [acyl-carrier protein] melibiose degradation a purine base UDP-N-acetylmuramoyl-L- D-threo-7,8- a 3,5,7,9,11,13,15- a peptide with menaquinol-6 IX92_RS13245 biosynthesis I (de novo) isomerase, class pyruvate D-gluconate coenzyme A an apo-[aryl- a nucleoside NADPH NAD + NADP + FMNH acetyl-CoA a protein with (S)-NADPHX DHAP a decanoyl-[acp] [acyl-carrier- acetate γ 2 galactosamine hepta-oxo- Ap4A I: IX92_RS09750 propionyl- glycolate lesion in DNA alanyl- -D-glutamyl-meso-2,6- GTP dihydroneopterin a ribonucleic acid an N-terminal IMP cys chitobiose degradation pyruvate gluconate acetate-- carrier protein] bis(tungstenpterin) triphosphate 6-phosphate a disulfide bond protein] 3-hydroxyacyl- diaminopimeloyl-D-alanine hexadecanoyl-[PKS-acp]aldo/keto acetyl-CoA protein-disulfide L-alanine bifunctional NAD(P)H- bis(5'-nucleosyl)- 2+ 2+ 3-phospho- preQ melibiose F6P CoA dehydrogenase kinase: acetate kinase: CoA ligase: cofactor Mg RS01025 Mg beta-ketoacyl- synthase II: 0 carboxylase ADP-dependent dependent tetraphosphatase [acyl-carrier- (R)-glycerate N,N'- synthetase: IX92_RS22470 IX92_RS14930 NAD(P)(+) reductase: reductase DsbD: [acyl-carrier- IX92_RS04260 IscS subfamily preQ(1) complex D-gluconate IX92_RS04785 bifunctional DNA- holo-ACP bifunctional NAD(P)H-flavin carboxyltransferase NAD(P)H-hydrate glycerol-3- (symmetrical): GMP reductase: a (7Z)-3- protein] UDP-glucose 4- diacetylchitobiose prpE LD-carboxypeptidase: DNA-directed N-acetylglucosamine- IX92_RS16950 IX92_RS14880 protein] cysteine synthase: alpha-glucosidase/ dihydrolipoyllysine- glyoxylate acetate kinase: formamidopyrimidine dihydroneopterin transhydrogenase reductase: aminopeptidase IX92_RS18985 Carbohydrate Biosynthesis oxotetradec- dehydratase 2,3-bisphosphoglycerate- 6'-phosphate 6-phosphate IX92_RS05995 synthase: molybdenum cofactor RNA polymerase: 6-phosphate subunit beta: dehydratase/ phosphate IX92_RS13120 epimerase GalE: [+ 3 isozymes] (Re/Si-specific): aldo/keto protein-disulfide 2+ 2+ superpathway of (Kdo) -lipid A biosynthesis Cell Structure Biosynthesis synthase II: desulfurase: IX92_RS03345 alpha-galactosidase: residue IX92_RS21395 glycosylase/ IX92_RS01790 guanylyltransferase aldolase/7,8- IX92_RS00640 IX92_RS03650 N: IX92_RS06850 Mg RS12655 Mg 2 7-enoyl-[acp] FabZ: independent UDP-glucose-- glyoxylate IX92_RS13960 deacetylase: NAD(P)H-hydrate dehydrogenase: lipid IV biosynthesis (P. putida) Kdo transfer to lipid IX92_RS02260 IX92_RS02465 acetyltransferase: DNA-(apurinic or LD-carboxypeptidase: dihydroneopterin IX92_RS20560 reductase: reductase DsbD: A IX92_RS04260 3-oxoacyl- NADPH- IX92_RS02410 acetyl phosphate acetyl-CoA MobA: IX92_RS07690 flavin reductase: ADP IV II (Haemophilus) IX92_RS11850 phosphoglycerate hexose-1-phosphate propanoyl-CoA carboligase: IX92_RS16700 [+ 2 isozymes] IX92_RS13965 IX92_RS03135 IX92_RS21945 [+ 4 isozymes] IX92_RS17310 epimerase: IX92_RS15030 GMP a (3R)-3- A gluconeogenesis I UDP-glucose 4- aceF apyrimidinic site) epimerase: IX92_RS20565 IX92_RS18030 9-hydroxy-3,5,7,11,13,15- a protein with UDP-N-acetyl-D- dTDP-N-acetylthomosamine α beta-ketoacyl- ACP mutase: IX92_RS13915 cysteine dependent uridylyltransferase: [+ 2 isozymes] IX92_RS16175 [+ 4 isozymes] malonyl-CoA IX92_RS18975 sn-glycerol hydroxytetradecanoyl- UDP-N-acetyl- a (3R)-3- UDP- -D-glucose epimerase GalE: N-monoacetylchitobiose 2-methylcitrate acetyl-CoA lyase: IX92_RS15385 IX92_RS13045 hexaoxohexadecanoyl- reduced L- CMP-Kdo lipid IV (E. coli) glucosamine biosynthesis I [acyl-carrier- reductase a 2,3,4-saturated a trans-2-enoyl- desulfurase 7-cyano-7- ala a peptide 3-phosphate 2+ 2+ α hydroxydecanoyl- UDP-N-acetyl- A biosynthesis biosynthesis I IX92_RS02470 tartronate UDP-N-acetyl-α-D-muramoyl- a holo-[aryl- bis(guanylyl D-galactosamine NADPH Mg RS28065 Mg [acp] -D-glucosamine Polyprenyl Biosynthesis (S)-malate FabG: fabG 2-phospho- CsdA: deazaguanine α-D-glucopyranose IX92_RS19990 6'-phosphate synthase: 3',5'-ADP [PKS-acp] cysteine residues protein] fatty acyl-[acp] [acyl-carrier protein] D-galactopyranose D-glucopyranose + acetate [acp] α-D-glucosamine D-glucopyranose α UDP-α-D-galactose phosphate semialdehyde L-alanyl-γ-D-glutamyl- carrier protein] tungstenpterin) cofactor NADH NADP NADPH + 6-phosphate -D-glucopyranose D-glucopyranose a (3R,7Z)-3- D-glycerate IX92_RS12145 reductase QueF: 1-phosphate IX92_RS06665 D-ala a ribonucleic acid FMN H 3-deoxy-D-manno- NAD-dependent 6-phosphate synthase I: acetyltransferase: a 5'-phospho- a 3'-phospho- a modified 6-(hydroxymethyl) glycolaldehyde acyl-[acyl-carrier- polyisoprenoid biosynthesis (E. coli) glucose-6- 1-phosphate 6-phosphate hydroxytetradec- an [L-cysteine 6-phospho-beta- 2-hydroxy-3- phosphate 4-oxo-2-pentenal meso-2,6-diaminopimelate acyl-ACP--UDP-N- geranyl malic enzyme: phosphoglucomutase IX92_RS03625 IX92_RS18135 (2S,3S)-2- [DNA] [DNA] nucleobase -7,8-dihydropterin protein]--UDP-N- octulosonic acid malate glucose-1-phosphate phosphopyruvate glucosidase: IX92_RS04525 oxopropionate acetyltransferase: Mg 2+ Mg 2+ IX92_RS05440 phosphate a 3- 7-enoyl-[acp] desulfurase]-S- preQ phosphoglucomutase methylcitrate pyruvate fermentation RS13115 acetylglucosamine acetylglucosamine transferase: diphosphate thymidylyltransferase: (alpha-D-glucose- 1 fructose degradation 2+ 2+ NAD-dependent dehydrogenase: isomerase: 3-hydroxyacyl- hydratase: sulfanyl-L-cysteine (alpha-D-glucose- IX92_RS24530 phosphate to acetate IV reductase: IX92_RS04525 Co Co O-acyltransferase: biosynthesis IX92_RS15345 1,6-bisphosphate- oxododecanoyl- Fe/S-dependent O-acyltransferase: IX92_RS15335 IPP IX92_RS05440 IX92_RS01820 acetyltransferase: IX92_RS16185 N-acetyl-D-glucosaminyl-N- a peptidoglycan dimer (meso N-acetyl-muramoyl-(L- a PepB 34 malic enzyme: IX92_RS13680 dTDP-α-D-glucose [acyl-carrier- tRNA 1,6-bisphosphate- β phosphate DNA combined a 5'-half-tRNA 2-chloro-trans an adenosine IX92_RS11845 IX92_RS11845 dependent): [acp] biotin-carboxyl carrier N-acetyl-D- -D-fructofuranose 2-methylisocitrate hydrogen selenide a protein with glutathione γ FMN NADH H + a RNA-DNA hybrid a (2E)-docos- (R)-NADPHX (S)-NADHX 3',5'-ADP IPP IX92_RS05440 F6P protein] acyl-CoA hydrolysis guanosine(34) dependent): D-glucosamine IX92_RS04780 pyruvate acetyltransferase: O-acetyl-L-serine acetylmuramoyl-L-alanyl-D-glutamyl- -diaminopimelate containing) alanyl- -D-glutamyl-L- with exogenous a 3'-half-tRNA molecule with aminopeptidase -dienelactone ethylphosphate in [tRNA Arg2 ] α-Kdo-(2->6)- isopentenyl- dTDP-glucose IX92_RS03180 3-oxoacyl- protein assembly phosphoenol glucosamine 1-phosphate dehydratase (R)-glycerate a disulfide bond 2-enoyl-[acp] (2E,6E)-farnesyl pyruvate dehydratase transglycosylase IX92_RS03180 1-phosphofructokinase: IX92_RS04780 6-carboxy-L-lysyl-D-alanine lysyl-D-alanyl-D-alanine) DNA to form a molecule with a 2',3'-cyclic substrate dienelactone bifunctional bifunctional alkaline tRNA 3'(2'),5'- thr thr UDP-3-O-[(3R)-3- UDP-3-O-[(3R)-3- lipid IV (E. coli) diphosphate ACP a [TusA sulfur- AcnD: bifunctional 3- RS17365 A glutamine-- 4,6-dehydratase: α [+ 2 isozymes] FabZ: pyruvate Tgt: IX92_RS02560 6-phosphate acetyl phosphate recombinational phosphate end hydrolase: ADP-dependent ADP-dependent adenosine(34) serine serine hydroxydecanoyl]- diphosphate -D-glucopyranose reductase a [biotin carboxyl- a 2,3,4-saturated carrier protein]-S- [+ 2 isozymes] β IX92_RS20640 IX92_RS06670 formate C- serine-type crossover junction a 5'-OH end hydroxydecanoyl- phosphatase: bisphosphate hydroxymyristoyl]-N- D-ribulose 5-phosphate 3-deoxy-D-manno- Delta-isomerase: fructose-6- IX92_RS15340 a 7-aminomethyl-7- -D-fructose 1,6- O-acetylhomoserine NAD(P)H-flavin ribonuclease HI: IX92_RS16600 deaminase N-acetyl-α-D- synthase: phosphoenolpyruvate 1-phosphate IX92_RS11850 carrier protein]-L-lysine fatty acyl CoA sulfanyl-L-cysteine LD-carboxypeptidase: D-Ala-D-Ala glutaredoxin: serine-type junction endodeoxyribonuclease aminopeptidase ACP dehydratase/ NAD(P)H-hydrate NAD(P)H-hydrate IX92_RS16420 nucleotidase: acetyl-α-D-glucosamine IX92_RS19940 FabG: fabG acyl-CoA phosphoenolpyruvate 34 bisphosphate acetyltransferase: reductase: IX92_RS11780 octulosonic phosphate dTDP-glucose a (2E,7Z)- deazaguanosine D-glucopyranose 2-methyl-trans acetate kinase: aminocarboxypropyltransferase/ PepB: dienelactone dehydratase/ dehydratase/ TadA: IX92_RS15515 UDP-3-O-acyl-N- glucosamine IX92_RS03275 oxaloacetate synthase: UTP--glucose- [+ 2 isozymes] bifunctional biotin- pyruvate IX92_RS04985 IX92_RS05995 carboxypeptidase: IX92_RS06390 D-Ala-D-Ala RuvC: IX92_RS09890 trans-2-decenoyl- alkaline D-arabinose acid kinase: geranyl transaminase 4,6-dehydratase: tetradeca-2,7- thioesterase II: synthase: in tRNA 6-phosphate -aconitate IX92_RS04785 2-phospho- cysteine synthase: IX92_RS02840 2'-5' RNA ligase: IX92_RS00640 [+ 3 isozymes] IX92_RS03035 ornithine ornithine UDP-3-O-acyl-N- DMAPP IX92_RS06790 a (3R)-3- -[acetyl-CoA- kinase PykF: IX92_RS12650 [+ 3 isozymes] carboxypeptidase: IX92_RS02295 hydrolase: ACP isomerase: NAD(P)H-hydrate NAD(P)H-hydrate acetylglucosamine 5-phosphate IX92_RS15360 diphosphate 1-phosphate IX92_RS04480 IX92_RS06790 pyruvate decarboxylation to acetyl CoA LD-carboxypeptidase: Holliday junction IX92_RS17925 phosphatase: an inosine 34 (isomerizing): IX92_RS28425 dienoyl-[acp] IX92_RS13200 tRNA preQ1(34) S- 2-methylaconitate acetate kinase: D-glycerate cysteine synthase: IX92_RS12650 flavin reductase: IX92_RS16750 epimerase: epimerase: AMP RS05695 deacetylase: acetylglucosamine α phosphoenolpyruvate phosphoenolpyruvate uridylyltransferase: hydroxydodecanoyl- carboxylase] IX92_RS16700 resolvase RuvX: IX92_RS06900 IX92_RS10225 Arg2 isomerase: 4-O-phospho- - IX92_RS13190 [+ 2 isozymes] phosphoenolpyruvate a [TusD sulfur- adenosylmethionine cis-trans IX92_RS21395 acetyl-CoA formate resolution of IX92_RS18030 IX92_RS18975 IX92_RS18975 in [tRNA ] deacetylase: (2E,6E)-farnesyl dTDP-4-dehydro- IX92_RS13550 [acp] synthetase/ a 2,3,4-saturated pyruvate kinase: a [pyruvate IX92_RS04460 a nucleoside 5'- 2-chloromaleylacetate a (3Z)-docos- arg arg IX92_RS12275 IX92_RS01075 Kdo-(2->6)-lipid IV carboxykinase (ATP) synthase: carrier protein]-S- a peptidoglycan with a protein with recombinationalIX92_RS13295 DNA ethanol 2+ 2+ A α synthase: ribosyltransferase- isomerase PrpF: a proteinogenic Zn Zn UDP-3-O-(3- IX92_RS12275 diphosphate D-glucosamine 6-deoxy- -D- 3-hydroxyacyl- biotin operon fatty acid IX92_RS04320 acetate dehydrogenase GSSG N-acetyl-muramoyl-(L- a peptide monophosphate 3-enoyl-[acp] (S)-NADPHX NADH RS10535 aldehydo-D-arabinose : IX92_RS15640 IX92_RS23235 α IX92_RS23235 sulfanyl-L-cysteine phosphate N-acetyl-D-glucosaminyl-N- D,D cross-links (meso- D-ala reduced L- junction a ligated tRNA 2+ 2+ UDP-3-O-(3- synthase: 6-phosphate glucopyranose UDP- -D-glucose isomerase QueA: IX92_RS06675 6 pyruvate amino acid Cd Cd hydroxymyristoyl) [acyl-carrier- repressor: E2 protein] N acetylmuramoyl-L-alanyl-D- diaminopimelate containing) cysteine residues alanyl-γ-D-glutamyl- D-ala + 5-phosphate a (7Z)-tetradec- IX92_RS02555 acetyltransferase: acetate D-ala formation of two with a 2'-5' linkage FMNH NAD -α-D-glucosamine hydroxydecanoyl) IX92_RS03275 phosphoglucosamine dTDP-4-amino-4,6- protein] IX92_RS15165 cis-2- -lipoyl-L-lysine dehydrogenase L-selenocysteine 2 Aromatic Compound Biosynthesis phosphoenol 7-enoyl-[acp] IX92_RS04525 glutamyl-6-carboxy-L-lysine L-lysyl-D-alanine) intact strands -α-D-glucosamine dideoxygalactose pyruvate an epoxyqueuosine 34 methylaconitate pyruvate (acetyl- UDP-3-O-(3- UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) geranyl pyruvate mutase: IX92_RS12615 dehydratase a [biotin carboxyl- UDP-3-O-(3- transaminase: beta-ketoacyl- a [TusE sulfur in tRNA bifunctional phosphate dehydrogenase transferring) Cd 2+ RS07390 Cd 2+ hydroxymyristoyl) diphosphate phosphopyruvate α-D-glucosamine FabZ: carrier protein]-N hydroxymyristoyl) chorismate biosynthesis I IX92_RS15180 [acyl-carrier- 6 34 carrier protein]-S acetyltransferase: complex E1 component glucosamine N- D-arabinofuranose UDP-N-acetyl-α-D-glucosamine 4-hydroxyphenylpyruvate β IX92_RS11850 -biotinyl-L-lysine a uridine in tRNA tRNA aconitate L-malate UDP-N-acetyl- undecaprenyldiphospho- trimethylamine (1S,2R)-1- Nα,Nε-diacetyl-lysyl- DNA with adenine:7,8- a trans-delta2- 5-chloro-trans 2-chloro-cis- a [ribosomal 2''-O-acetyl- (3R,5S)-3- (2E,6E)-farnesyl dipicolinate biosynthesis hydratase: ADP-L-glycero- -D-manno 1-phosphate -sulfanylcysteine IX92_RS04780 a ferrocytochrome stearoyl-CoA a reduced an ADP-sugar cis-dienelactone acyltransferase: 5-phosphate glucosamine N- dTDP-4-amino-4,6- PRPP biosynthesis protein] epoxyqueuosine(34) hydratase 2/2- degradation II dihydrolipoyllysine- subunit alpha: α-D-glucosamine N-acetylmuramoyl-L- DL-allothreonine N-oxide ser C-(indol-3- D-alanyl-D-alanine dihydro-8- cis-delta21- -dienelactone dienelactone protein L3]- ADP-ribose a protein hydroxy-1- UDP-N-acetylglucosamine diphosphate D-erythrose biosynthesis IX92_RS01820 -heptose biosynthesis bifunctional UDP-N- a (2E)-dodec- β Fatty Acid and Lipid Degradation ATP b TorC protein acyltransferase: α synthase I: oleate -oxidation residue IX92_RS21150 5 IX92_RS11855 dideoxy- -D-galactose reductase QueG: fatty acid β-oxidation III methylisocitrate alanyl-γ-D-glutamyl-meso ammonium hydrogencarbonate yl)glycerol oxoguanine mismatch C40:2-[acp] dienelactone dienelactone L-glutamine dienelactone pyrroline-5- 3+ 3+ 3-deoxy-8- 1-carboxyvinyltransferase: synthase: 4-phosphate 2-phospho- acetylglucosamine 2-enoyl-[acp] NADH repair tRNA 2- androstenedione degradation acetyl phosphate pyruvate bifunctional 3- 50S ribosomal carboxy terminal- Fe RS17040 Fe UDP-2-N,3-O-bis[(3R)- IX92_RS11855 asp D-sedoheptulose D-ribose 5- IX92_RS03625 IX92_RS13830 dehydratase: (S)-malate acetyltransferase: [+ 2 isozymes] hydrolase: hydrolase: hydrolase: phosphooctulonate IX92_RS01115 3-deoxy-7- tyr a [biotin carboxyl- (unsaturated, odd number) -2,6-diaminopimeloyl- 3-phosphate ADP compounds hydroxydecanoyl- protein L3 O-acetyl- processing carboxylatepyrroline-5- 3-hydroxytetradecanoyl]- UDP-2-N-[(3R)-3- IX92_RS03275 D-glycerate 7-phosphate diphosphorylase/ phosphate thiouridine(34) aceF dehydrogenase serine-type phosphoheptulonate aspartate kinase: ribose-phosphate 34 oleate IX92_RS12785 NAD-dependent a [pyruvate D-alanyl-D-alanine adenine DNA IX92_RS16600 IX92_RS16600 IX92_RS16600 carboxylate synthase: UDP-N-acetyl-α-D- aspartate/ D-sedoheptulose glucosamine-1- beta-ketoacyl- carrier-protein dimer]- synthase MnmA: a queuosine acetate kinase: a [pyruvate serine acyl-CoA trimethylamine- D-Ala-D-Ala hydrolase NudE: ACP dehydratase/ N(5)-glutamine ADP-ribose peptidase: α-D-glucosamine hydroxydodecanoyl]- (2E,6E)-farnesyl IX92_RS28075 2,3-bisphosphoglycerate- NADH androst-4-ene-3,17-dione a (3Z)-alk-3- malic enzyme: complex tryptophan IX92_RS11065 synthase: 7-phosphate dTDP-4-acetamido-4,6- pyrophosphokinase: [acyl-carrier- N 6 -biotinyl-L-lysine in tRNA (2R,3S)-2- IX92_RS04785 [+ 2 isozymes] dehydrogenase dehydrogenase hydroxymethyltransferase: glyA carbamate kinase: desaturase: N-oxide glycosylase: IX92_RS15520 trans-2-decenoyl- dienelactone dienelactone methyltransferase: deacetylase: dienelactone IX92_RS06840 reductase: 3-O-[(3R)-3- glucosamine-enolpyruvate tyrosine/aromatic phosphate N- IX92_RS09560 enoyl-CoA dihydrolipoyllysine- carboxypeptidase: 3+ 3+ diphosphate independent long-chain IX92_RS05440 6 6 undecaprenyldiphospho- synthase: Fe RS07930 Fe UDP-2,3- IX92_RS02125 [+ 4 isozymes] isomerase: α IX92_RS11105 protein] fatty acid methylisocitrate acetate kinase: E2 protein] N E2 protein] N -S- serine IX92_RS14855 IX92_RS20790 reductase TorA: IX92_RS13355 ACP isomerase: hydrolase: hydrolase: IX92_RS03575 IX92_RS22395 hydrolase: IX92_RS13315 hydroxydecanoyl]- aminotransferase: phosphoglycerate acetyltransferase dideoxy- -D-galactose acetyl-CoA acetyl-CoA fatty acid-- residue muramoylpentapeptide beta-N- IX92_RS12650 a [ribosomal a peptide diacylglucosamine KDO-8P UDP-N-acetylmuramate [+ 2 isozymes] L-aspartyl-4-phosphate PRPP synthase II: oxidation pyruvate -dihydrolipoyl- acetyldihydrolipoyl- IX92_RS05305 IX92_RS16750 IX92_RS16750 IX92_RS16750 Hyp α 3-deoxy- IX92_RS19790 IX92_RS11760 GlmU: a dodecanoyl-[acp] carboxylase carboxylase a 2-thiouridine 34 IX92_RS21395 acetyltransferase: hydroxymethyltransferase: glyA IX92_RS09925 an α-D-aldose IX92_RS06900 protein L3]- diphosphatase: -D-glucosamine dehydrogenase: di-trans,poly-cis- mutase: IX92_RS13915 CoA ligase: acetylglucosaminyltransferase: IX92_RS05310 octaprenyl IX92_RS04260 complex subunit methylisocitrate L-lysine L-lysine a cis,cis-delta3,21- 5 D-arabino- phosphoheptose IX92_RS00070 carboxyltransferase biotin in tRNA IX92_RS01650 aceF IX92_RS12300 an apurinic site 1-phosphate 5-chloromaleylacetate 2-chloromaleylacetate N -methyl- 2-maleylacetate IX92_RS10165 UDP-2,3- IX92_RS15160 decaprenylcistransferase: diphosphate aspartate/ 3-phospho- a (9Z)-3- alpha FadB: acetate a ferricytochrome oleoyl-CoA Nα,Nε-diacetyl- AMP C40:2-[acp] ADP-D-ribose a metal a metal 3-deoxy-manno- ala heptulosonate aspartate-semialdehyde isomerase: α subunit beta: carboxylase protein S-nitrosylation androsta-1,4-diene-3,17-dione lyase: within DNA L-glutamine acetate RS01205 diacylglucosamine glu α IX92_RS11885 synthase: tyrosine/aromatic (R)-glycerate N-acetyl- -D- oxohexadec- tRNA uridine-5- [+ 2 isozymes] carbamoyl phosphate b an oxidized D-glyceraldehyde lysyl-D-alanine D-ala adenine cation cation octulosonate-8- UDP-N-acetyl- -D-muramate dehydrogenase: beta-ketoacyl- (R)-NADHX IX92_RS00105 IX92_RS06660 acetaldehyde 5 trimethylamine lipid X diphosphatase: 7-phosphate aminotransferase: D-glycero-D-IX92_RS12360 glucosamine IX92_RS03650 subunit: and denitrosylation a (2E)-2- lipid II (meso gly 3-phosphate trp IX92_RS13155 phosphoglycerate [acyl-carrier- 9-enoyl-[acp] bifunctional carboxymethylaminomethyl(34) UDP TorC protein phosphatase 3-dehydroquinate IX92_RS03635 3-(4- UDP-N-acetyl-α-D- [+ 2 isozymes] IX92_RS14945 oleoyl-CoA enoyl-CoA diaminopimelate containing) IX92_RS10165 di-trans,octa-cis IX92_RS05460 kinase: manno-heptose 1-phosphate 3-oxoacyl- synthesis GTPase a [protein]- lipid-A- KdsC: glutamate racemase: UDP-N-acetylmuramate- synthase: [+ 2 isozymes] protein] a [carboxyl-carrier ADP-dependent -undecaprenyl all-trans- hydroxyphenyl) 7-phosphate bifunctional UDP-N- mannosaminouronate laurate ACP MnmE: IX92_RS15990 L-cysteine pyruvate succinate acetyl-CoA a metal a metal disaccharide IX92_RS01070 IX92_RS00955 -L-alanine ligase: IX92_RS13245 synthase II: 6 NAD(P)H- acyl-CoA lipid X (P. putida) diphosphate octaprenyl IX92_RS14145 pyruvate bifunctional D-glycero- biosynthesis protein dimer]-N - 9α-hydroxyandrosta- synthase: IX92_RS12295 L-aspartate 4-semialdehyde acetylglucosamine UDP-N-acetyl- IX92_RS04260 reductase hydrate tRNA uridine-5- an E. coli 32 an [L-cysteine trimethylamine β-D-fructofuranose a trans-delta2- 3''-O-acetyl- cation cation carboxybiotinyl-L-lysine dehydrogenase: an L-1- a cytosine + a reduced 4-nitrophenyl α-Kdo undecaprenyl- diphosphate 13-DPG beta-D-manno- diphosphorylase/ long-chain FabG: fabG 1,4-diene-3,17-dione a peptidoglycan H hydrogencarbonate carbamoyl pimeloyl-CoA H O precorrin-3B trans-dienelactone a phenyl acetate RS21290 IX92_RS11840 lipid-A- 3-dehydroquinate α-D-glucosamine dehydratase/ carboxymethylaminomethyl(34) osmoregulated desulfurase]-S- N-oxide asp ala 2 1-phosphate cis-delta15- ADP-ribose a protein a protein D-glt beta-ketoacyl- fatty acid-- IX92_RS21210 phosphatidylethanolamine in tRNA TorY protein ATP palmitate α diphosphate heptose-7-phosphate glucosamine-1- UDP-N- periplasmic sulfanyl-L-cysteine phosphate C34:2-[acp] precorrin-3B C(17)- dienelactone ala ala lipid A disaccharide disaccharide UDP-N-acetyl- -D-muramoyl-L-alanine 4-hydroxy- [acyl-carrier- [+ 2 isozymes] fatty acid biosynthesis NAD(P)H- synthesis enzyme a [protein] 3- [+ 3 isozymes] bifunctional 3- HslU--HslV serine 3-deoxy-manno- phosphatase: type II 3- glyceraldehyde- kinase/D-glycero- phosphate N- acetylglucosamine CoA ligase: a (3R,9Z)-3- methyltransferase: hydrolase: (E. coli) synthase: tetrahydrodipicolinate initiation (bacteria and plants) hydrate MnmG: IX92_RS00005 nitrosothio- glucan (OPG) lysozyme: hydroxydecanoyl- O-acetyl- peptidase endoprotease a metal a metal octulosonate IX92_RS13035 dehydroquinate beta-D-manno- acetyltransferase 2-epimerase protein] IX92_RS01650 (2E,9Z)- carbonate fructose- IX92_RS16600 IX92_RS11840 UDP-N-acetylmuramoyl- synthase: IX92_RS10995 3-phosphate hydroxyhexadec- epimerase: L-alanine 3-hydroxy-9,10-secoandrosta- tRNA 2- trimethylamine- aspartate 8-amino-7- arylesterase: IX92_RS09150 ADP-ribose arylesterase: ATPase subunit: DegQ: cation cation tetraacyldisaccharide 4'- cytidylyltransferase: peptidoglycan maturation (meso-diaminopimelate containing) di-trans,octa-cis heptose 1-phosphate synthase I: [+ 2 isozymes] a 5-carboxymethylaminomethyl- octadecenoyl-CoA IX92_RS19125 dehydratase: ATPase: bisphosphate ACP dehydratase/ dehydratase: triose-phosphate dehydrogenase: GlmU: (non-hydrolyzing) 9-enoyl-[acp] 34 phosphoethanolamine thiocytidine(32) IX92_RS19955 IX92_RS19955 RS02815 lipid A L-alanine--D-glutamate -undecaprenyl (2S,4S)-4-hydroxy-2,3,4,5- acetyl-CoA IX92_RS18975 2-thiouridine in tRNA 1,3,5(10)-triene-9,17-dione N-oxide carbamoyltransferase: oxononanoate trans-2-decenoyl- precorrin-3B C(17)- dienelactone deacetylase: IX92_RS15075 IX92_RS12415 kinase: IX92_RS04925 IX92_RS04935 IX92_RS14935 adenylyltransferase IX92_RS00070 : IX92_RS04605 IX92_RS03625 (S)-NADHX fatty acid lysozyme: IX92_RS12855 IX92_RS02860 aldolase: disaccharide ligase: IX92_RS12310 lipid II (meso tetrahydrodipicolinate isomerase: IX92_RS13250 3-hydroxyacyl- acetyl-CoA carboxylase transferase: synthetase TtcA: reductase TorA: IX92_RS14865 synthase: methyltransferase: hydrolase: IX92_RS22395 ala ala phosphate HldE: IX92_RS01885 lauroyl-CoA oxidation IX92_RS20225 [+ 12 isozymes] IX92_RS08925 ACP isomerase: a peptide a peptide lipid IV (E. coli) CMP-Kdo (P. putida) diaminopimelate containing) IX92_RS14045 D-glyceraldehyde UDP-N-acetyl- UDP-N- [acyl-carrier- carboxyltransferase IX92_RS11355 IX92_RS07415 [+ 2 isozymes] IX92_RS18130 IX92_RS16750 A β IX92_RS09925 [+ 3 isozymes] IX92_RS09630 IX92_RS06900 a metal a metal meso-diaminopimelate α 3-dehydroshikimate DHAP D-glycero- -D- protein] ATP-dependent complex subunit RS17855 tetraacyldisaccharide 4'- UDP-N-acetyl- -D-muramoyl- peptidoglycan 3-phosphate α-D-glucosamine acetylglucosamine a 3-oxotetradecanoyl- subunit beta: a cis,cis-delta3,15- 4-nitrophenol palmitate precorrin-4 2-maleylacetate acetate a phenol cation cation manno-heptose NADH-hydrate a [protein]- alpha FadJ: an E. coli osmoregulated N-acetyl-D- a N-acetylmuramoyl- + L-alanyl-D-glutamate glycosyltransferase: shikimate 2-epimerase [acp] dehydratase IX92_RS03650 a 5-aminomethyl-2- S-nitrosoglutathione 3,4-dihydroxy-9,10-secoandrosta- a 1,2-diacyl- 32 an [L-cysteine H ADP-D-ribose 3-deoxy- kinase: IX92_RS04925 dehydratase: L-cysteine Secondary Metabolite Degradation periplasmic glucan with a 2-thiocytosine phosphate DHAP D-glyceraldehyde C34:2-[acp] acetate 1,7-bisphosphate 34 IX92_RS03870 sn-glycerol glucosamine pentapeptide- CO H O 8-amino-7- ADP IX92_RS12305 dehydrogenase: dipicolinate (non-hydrolyzing) FabZ: thiouridine in tRNA 1,3,5(10)-triene-9,17-dione desulfurase]- 2 2 an oxidized D-manno- lipid IV 3-oxoacyl- [+ 2 isozymes] IX92_RS18975 phosphotidylethanolamine in tRNA trimethylamine N-carbamoyl- coenzyme A A UDP-N-acetylmuramoyl- 2,3-dihydroxybenzoate D-glycero- IX92_RS11850 S-(hydroxymethyl) [+ 2 isozymes] L-cysteine diphosphoundecaprenol oxononanoate (P. putida) a nascent peptidoglycan IX92_RS15745 GDP-mannose biosynthesis : IX92_RS23090 malonyl-CoA 5-methylaminomethyl- TorY protein L-aspartate a metal a metal octulosonic acid L-alanyl-D-glutamate-- fructose- beta-D-manno- UDP-N-acetyl-α- ACP a (2E,9Z)- glutathione anhydromuropeptides recycling I substituent RS17870 with (L-alanyl-γ-D-glutamyl- biosynthesis NADH 2-thiouridine-forming (S)-3-hydroxy-(9Z) mannitol cation cation transferase: 2, 6-diaminopimelate shikimate bisphosphate heptose 1,7- D-mannosamine reductase hexadeca-2,9- [acyl-carrier-protein] S dehydrogenase/ meso-2,6-diaminopimeloyl-D- D-glucopyranose methyltransferase: -octadecenoyl-CoA GlcNAc-1,6-anhMurNAc- degradation I IX92_RS15335 aldolase: bisphosphate 7- UDP-N-acetyl-D- FabG: fabG dienoyl-[acp] class III alcohol (1E,2Z)-3-hydroxy-5,9,17- ligase: IX92_RS23310 chorismate 6-phosphate -malonyltransferase: γ UDP-N-acetyl-α-D-muramoyl-L- a 1-(1-alkenyl) a peptidoglycan adenosine an oxidized alanyl-D-alanine) pentapeptide shikimate IX92_RS03620 fatty acid trioxo-4,5:9,10-disecoandrosta- L-Ala- -D-Glu-DAP-D-Ala D-mannitol an oxidized c- (S)-2- 4-nitrophenyl D-erythro-7,8- an unfolded isochorismate IX92_RS08925 phosphatase: glucose-6- mannosamine [+ 2 isozymes] IX92_RS04245 dehydrogenase: cob(II)inamide alanyl-γ-D-glutamyl-meso-2,6- 2-methylbutanoate isovalerate (S)-lactate dimer (S. aureus) 2',3'-cyclic glu a [protein] Ser/Thr citrate starch nitroaromatic α D-ala UDP-N-acetylmuramoyl- a 5-methylaminomethyl- oxidation -sn-glycero-3- butanoate dihydroneopterin thr -Kdo-(2->6)- kinase AroK: synthase: IX92_RS11710 phosphate dehydrogenase: a (3R)-3- IX92_RS18665 1 (10),2-dien-4-oate 1-phosphate ATP type cytochrome aminobutanoate protein predicted serine-type serine-type class II fructose- 34 mannitol-1- diaminopimeloyl-D-alanyl-D-alanine phosphocholine monophosphate serine/threonine bifunctional bifunctional compound lipid IV (E. coli) L-alanyl-D-glutamate-- IX92_RS14150 D-glycero-β-D- hydroxytetradecanoyl- 2-thiouridine in tRNA complex subunit 2',3'-cyclic-nucleotide L-threonine A IX92_RS04405 isomerase: IX92_RS23085 a malonyl-[acp] protein kinase: NAD(P)H chaperonin ABC 2, 6-diaminopimelate D-Ala-D-Ala D-Ala-D-Ala bisphosphate S-(hydroxysulfenamide) phosphate 5- serine-type 2'-phosphodiesterase: dihydroneopterin aconitate Peptide Peptide KDO D-alanine--D-alanine isochorismate manno-heptose IX92_RS13680 UDP-N-acetyl-α-D- [acp] alpha FadJ: acetate-- dehydrogenase: alpha-amlyase: nitroreductase: GroEL: transporter ligase: IX92_RS12325 carboxypeptidase: carboxypeptidase: a mature peptidoglycan with shikimate 3- aldolase: a palmitoleoyl-[acp] glutathione dehydrogenase: serine-type D-Ala-D- acetate--CoA ligase: glutamate-- IX92_RS15840 arylesterase: aldolase/7,8- hydratase 2/2- transferase: ligase: IX92_RS20410 1-phosphate F6P 3-hydroxyacyl- ketoacyl-ACP synthase IX92_RS03870 N-acetyl-β-D-glucosamine-1,6- L-alanyl-γ-D-glutamyl-meso- cob(I)yrinic acid CoA ligase: lysoplasmalogenase: alpha- D-Ala-D-Ala IX92_RS14510 IX92_RS21660 IX92_RS27920 IX92_RS15140 of a peptide γ phosphate IX92_RS13240 mannosaminuronate IX92_RS13175 IX92_RS14930 IX92_RS19955 dihydroneopterin methylisocitrate IX92_RS03875 IX92_RS12650 IX92_RS12650 (L-alanyl- -D-glutamyl-meso- [acyl-carrier- 3-[(3aS,4S,7aS)-7a-methyl- anhydro-N-acetyl-β-D-muramate a,c-diamide Ala carboxypeptidase: IX92_RS14930 IX92_RS20670 hydroxy-acid carboxypeptidase: multifunctional cysteine ligase: serine/threonine a reduced IX92_RS15335 UDP-N-acetyl-α-D-muramoyl-L-alanyl- isochorismatase: bifunctional D-glycero- III: IX92_RS04240 a 5-methylaminomethyl- fatty acid (2Z,4Z)-2-hydroxyhexa- 2,6-diaminopimeloyl-D-alanine F6P L-threonine 3- D-alanyl-D-alanine 2,6-diaminopimeloyl-D-alanyl- 3-phosphoshikimate 1- mannose-6- protein] 1,5-dioxo-octahydro-1H adenosyltransferase: IX92_RS12650 oxidizing IX92_RS12650 IX92_RS01365 protein kinase: epimerase: dehydratase: nitroaromatic a protein α-Kdo-(2->4)-α-Kdo- γ-D-glutamyl-meso-2,6-diaminopimelate IX92_RS24355 beta-D-manno- ketoacyl-ACP synthase oxidation 2,4-dienoate beta-N- LD-carboxypeptidase: lysoplasmalogenase: CCA addition/ dehydrogenase: predicted a nascent peptidoglycan a nascent peptidoglycan D-alanine) pentapeptide carboxyvinyltransferase: phosphate 2-(S-geranyl) -inden-4-yl]propanoate protein: lldD IX92_RS27285 IX92_RS13045 IX92_RS12785 compound (2->6)-lipid IV (E. coli) dehydratase 34 IX92_RS10480 IX92_RS00830 repair protein: A with (L-alanyl-γ-D-glutamyl- with D,D cross-links (meso- (2S,3S)-2,3- heptose-7-phosphate III: IX92_RS21025 thiouridine in tRNA complex subunit acetylhexosaminidase: IX92_RS05995 D-threo-7,8- IX92_RS21860 glucose maltose ABC IX92_RS10125 β-D-fructose 1,6- isomerase, FabZ: hydroxylamine UDP-N-acetylmuramoyl-L- 2-methylbutanoyl- isovaleryl-CoA diphosphate a [protein] (L-serine/L- butanoate 4-nitrophenol D-threo-isocitrate Peptide Peptide UDP-N-acetylmuramoyl- dihydroxy-2,3- kinase/D-glycero- alpha FadB: IX92_RS03110 LD-carboxypeptidase: diphosphate a peptidoglycan IX92_RS01835 γ-L-glutamyl-(S)- aminoacetone transporter meso-2,6-diaminopimeloyl- diaminopimelate containing) 5-enolpyruvoyl- class I: palmitoleate γ CoA AMP AMP threonine) phosphate dihydroneopterin lipid A tripeptide--D-alanyl-D- bisphosphate IX92_RS11850 an acetoacetyl-[acp] D-ala alanyl- -D-glutamyl-meso-2,6- with D,D cross- D-ala 2-aminobutanoate of a peptide D-alanine) tetrapeptide shikimate 3- dihydrobenzoate beta-D-manno- UDP-α-D-galactose IX92_RS00105 [+ 4 isozymes] IX92_RS16700 adenosylcobinamide sn-glycero-3- a reduced c- 3'-AMP biosynthesis IX92_RS09750 triphosphate diaminopimeloyl-D-alanine a fatty aldehyde pyruvate alanine ligase: murF phosphate fructose- heptose 1-phosphate biosynthesis a (2E)-tetradec- (S)-4-hydroxy-2-oxohexanoate 3-[(3aS,4S,7aS)-7a-methyl- γ phosphocholine link (S. aureus) a 5-methylaminomethyl- 3-oxo-(9Z)- β L-alanyl- -D-glutamyl- type cytochrome lauroyl bisphosphatase adenylyltransferase D-mannopyranose 1,5-dioxo-octahydro-1H- 1,6-anhydro-N-acetyl- -muramate Peptide RS12705 Peptide α LD-carboxypeptidase: chorismate 2-enoyl-[acp] 2-(Se-phospho) octadecenoyl-CoA meso-diaminopimelate acyltransferase: UDP-N-acetyl- -D-muramoyl-L- a mature peptidoglycan class II: HldE: IX92_RS01885 6-phosphate UDP-α-D-glucose phosphatidylglycerol inden-4-yl]propanoyl-CoA IX92_RS05995 synthase: 34 ammonium anhydro-N- IX92_RS15420 alanyl-γ-D-glutamyl-meso-2,6- with D,D cross-links (meso- 2,3- IX92_RS15135 phosphomannomutase/ selenouridine in tRNA acetyl-CoA C- a nascent peptidoglycan LD-carboxypeptidase: a nascent peptidoglycan a mature peptidoglycan IX92_RS03580 ADP-D-glycero-β- UDP-glucose 4- biosynthesis II (non-plastidic) 2-dehydro-3-deoxy- all-trans- a ribonucleoside guanosine diaminopimeloyl-D-alanyl-D-alanine diaminopimelate containing) dihydroxybenzoate Storage Compound Biosynthesis acyltransferase acetylmuramic acid a ferrocytochrome an L-arginyl- a [protein]-L- a ribonucleoside an organic pyridoxamine with L,D cross links (meso- with (L-alanyl-γ-D-glutamyl- with (L-alanyl-γ-D-glutamyl- D-manno-heptose phosphoglucomutase: epimerase GalE: cob(II)alamin palmitoyl-CoA an acyl-[acyl-carrier protein] D-galactonate dodecaprenyl 1,4-dihydroxy- 2',3'-cyclic 2',3'-cyclic asp O-ureido-L- a uracil in DNA DNA with lesion α α IX92_RS16700 F6P (Kdo) -lipid A FadA: kinase: IX92_RS02090 myo-inositol degradation I a protein Arg β-isoaspartate diphosphate hydroperoxide a protein Peptide RS27965 Peptide -Kdo-(2->4)- - chorismate IX92_RS24380 2 DHAP ATP b [tRNA ] GTP 5'-phosphate IX92_RS02465 5 6-phosphate diphosphate 2-naphthoate phosphate monophosphate homoserine protein-L- thioredoxin- excinuclease diaminopimelate containing) meso-2,6-diaminopimeloyl- meso-2,6-diaminopimeloyl- ADP- biosynthesis I (E. coli) IX92_RS00100 1-propanal pyruvate 5-hydroxy-3-[(3aS,4S,5R,7aS)- multifunctional 2',3'-cyclic-nucleotide ribonucleoside- pyridoxamine Kdo-(2->6)-(lauroyl) Kdo -(palmitoleoyl) a nascent peptidoglycan with α-D-mannose a myristoyl-[acp] NAD(P)H- polyhydroxybutanoate biosynthesis a 5-methylaminomethyl- endopeptidase 2 glycine) tetrapeptide D-alanine) tetrapeptide glucose-6- glyceromanno- UDP-glucose 4- 7a-methyl-1,5-dioxo-octahydro- N-acetyl-D-muramate 6-phosphate isoaspartate(D- diphosphate bifunctional dependent thiol ABC subunit 5'-phosphate -lipid IV (E. coli) γ α-Kdo-(2->4)-α-Kdo- 2-selenouridine 34 [+ 2 isozymes] CCA addition/ 2'-phosphodiesterase: uracil-DNA A -lipid IV (L-alanyl- -D-glutamyl-meso- phosphate 1-phosphate epimerase GalE: dependent 5-(methoxycarbonylmethoxy) myo-inositol aspartate) O- peroxidase: UvrC: La: lauroyl-Kdo(2) A heptose 6- 1H-inden-4-yl]propanoyl-CoA cob(I)yrinic acid acyl-CoA phosphate 2-dehydro-3-deoxy-6- 1,4-dihydroxy- repair protein: IX92_RS14510 argininosuccinate reductase: diguanylate cyclase/ oxidase: 2,6-diaminopimelate) tripeptide beta-ketoacyl- (2->6)-lipid IV (E. coli)glycerol-3- in tRNA uridine biosynthesis arginyltransferase: glycosylase: IX92_RS04015 lauroyl-Kdo(2) a mature peptidoglycan isomerase: epimerase: α IX92_RS19990 lipidA A biosynthesis acetyl-CoA (7Z)-hexadecenoyl-CoA N-acetylmuramic acid desaturase: acyltransferase phosphogalactonate 2-naphthoate synthase: methyltransferase: IX92_RS08220 phosphodiesterase: IX92_RS11005 IX92_RS09250 IX92_RS23810 Peptide RS28495 Peptide -lipid IV(A) UDP- -D- [acyl-carrier- inositol 2- a,c-diamide IX92_RS10140 IX92_RS01835 multifunctional IX92_RS12225 -lipid IV(A) IX92_RS13680 IX92_RS15305 lauroyl acyltransferase:phosphate 6-phosphate etherase: IX92_RS14210 IX92_RS13005 IX92_RS08225 [+ 2 isozymes] myristoyltransferase: with L,D cross-links (meso- a mature peptidoglycan galactose dehydrogenase: adenosyltransferase: IX92_RS20790 PlsX: IX92_RS04235 aldolase: polyprenyltransferase: 2',3'-cyclic-nucleotide CCA addition/ a protein L-β- a 2'- IX92_RS08630 thiol peroxidase: PLP a peptide myristoyltransferase: β α protein] IX92_RS15420dehydrogenase: acetyl-CoA C- SAM acyl-CoA propanoyl-CoA IX92_RS02085 DNA without IX92_RS15425 diaminopimelate containing) with (L-alanyl-γ-D-glutamyl- D-glucopyranose ADP-L-glycero- - GDP- -D- α-Kdo-(2->4)-α-Kdo-(2-> prephenate (2E)-3-[(3aS,4S,5R,7aS) IX92_RS08905 IX92_RS10480 IX92_RS20700 IX92_RS14060 2'-phosphodiesterase: repair protein: isoaspartate deoxyribonucleoside [+ 7 isozymes] IX92_RS00565 α IX92_RS15425 synthase II: IX92_RS15030 acyltransferase dehydrogenase: an apyrimidinic uracil c-di-GMP lesion -D-Kdo-(2->4) a mature peptidoglycan with meso-2,6-diaminopimeloyl- 6-phosphate D-manno-heptose mannose 6)-(lauroyl)-lipid IV sn-glycerol (E. coli) -5-hydroxy-7a-methyl-1- N-acetyl-D-glucosamine 6-phosphate an N-terminal IX92_RS14510 IX92_RS01835 α-methyl ester 5'-diphosphate an alcohol Peptide RS04745 Peptide IX92_RS04260 A FadI: IX92_RS21210 scyllo-inosose a ferricytochrome Arg site in DNA -α-D-Kdo-(2->6) (Kdo) -lipid (L-alanyl-γ-D-glutamyl-meso- glycine) tetrapeptide palmitoleoyl-CoA an acyl phosphate a tRNA arginyl-[protein] a ribonucleoside canavaninosuccinate 2 3-phosphatelauroyl-Kdo(2)-lipid IV(A) IX92_RS03865 oxo-octahydro-1H-inden- adenosylcobalamin acyl-carrier protein D-glyceraldehyde 3'-GMP -lipid A (E. coli) A, cold adapted 2,6-diaminopimelate) tripeptide Tetrapyrrole Biosynthesis beta-ketoacyl- carboxy-S- [+ 3 isozymes] b pyruvate DMK-12 myristoyltransferase: 4-yl]prop-2-enoyl-CoA N-acetylglucosamine-6- myo-inosose-2 triphosphate 5 3-phosphate 3'-phosphate [acyl-carrier- glycerol-3- [+ 4 isozymes] adenosyl-L- (2E,7Z)- IX92_RS15425 phosphate deacetylase: dehydratase: protein] phosphate 1-O- methionine hexadecenoyl-CoA predicted Nucleoside and Nucleotide Biosynthesis tetrapyrrole biosynthesis α-D-Kdo-(2->4)-α-D- acetoacetyl-CoA IX92_RS03135 acyltransferase synthase: IX92_RS08950 ABC I (from glutamate) synthase I: fatty acid all-trans- a 5,6- a (1->4)- a vitamin a vitamin Kdo-(2->6)-lipid A (E. coli) PlsY: IX92_RS10005 3-[(3aS,4S,5R,7aS)-5- D-glucosamine 6-phosphate myo-inosose-2 cob(II)yrinate a 1-O-(alk-1-enyl)-sn-glycero- RNase III mRNA a peptidoglycan (2S)- methyl β-D-glucoside a ribonucleoside a cis-delta19- a cis-delta21-39- UDP IX92_RS03625 a 5-L-glutamyl- methanethiol O-succinyl-L- 20 a nucleoside transporter superpathway of guanosine acetoacetyl- oxidation an amino acid processing undecaprenyl 1,4-dihydroxy- methylsuccinyl- dihydrouracil oxo-40-methyl- α-D-glucan superpathway of pyrimidine deoxyribonucleoside salvage adenine and xanthine and pyrimidine IX92_RS13050 hydroxy-7a-methyl-1-oxo- dehydratase: a,c-diamide ATP 3-phosphoethanolamine dimer (generic) ATP acetyl-CoA 6-phosphate triphosphate 37-methoxy-38- triphosphate ribonucleoside- of a vitamin nucleotides de novo biosynthesis II superpathway of adenosine superpathway of guanosine superpathway of inosine-5'-phosphate biosynthesis I adenine and superpathway of 5-aminoimidazole pyrimidine deoxyribonucleotides de novo biosynthesis I CoA reductase: complex subunit [peptide] substrate homoserine diphosphate 2-naphthoate CoA in tRNA 1,4-alpha-glucan adenosine salvage V xanthosine salvage nucleobases salvage II glu a 3-oxohexadecanoyl- a 5- S-adenosyl-S- octahydro-1H-inden-4-yl]- phosphoglucosamine IX92_RS09015 a ribonucleic acid tRNA anaerobic methyl-C57:1-[acp]cyclopropane- C59:1-[acp]cyclopropane- nucleoside nucleotides de novo biosynthesis II nucleotides de novo biosynthesis I adenosine nucleotides adenosine salvage III ribonucleotide biosynthesis glycerol-3- IX92_RS19700 alpha FadJ: branching diphosphate [acp] 34 ribonucleoside- 2'-deoxycytidine UDP CTP phosphate 1-O- (3R)-3- hydroxyuridine carboxymethyl- 3-hydroxypropanoyl-CoA mutase: IX92_RS12615 3D-(3,5/4)- lytic 6-phospho-beta- dihydrouridine(20/ fatty-acyl- fatty-acyl- triphosphate reductase: a vitamin RS01930 a vitamin de novo biosynthesis I AIR cytosine IX92_RS03870 lysoplasmalogenase: cystathionine protein GlgB: PRPP ribonucleoside- nucleoside 3-oxoacyl- poly-[(R)-3- in tRNA L-homocysteine fatty acid oxidation trihydroxycyclohexane- cob(I)yrinic acid gamma- 1,4-dihydroxy- transglycosylase 3-oxoadipyl- 20a) synthase triphosphate phospholipid phospholipid hydrolase: IX92_RS08220 IMP cytosine deaminase: acyltransferase: hydroxybutanoyl- [+ 2 isozymes] α IX92_RS20670 ribonuclease III: polynucleotide glucosidase: IX92_RS16685 IMP IMP 5-(carboxyamino) adenine cytidine adenine xanthosine an L-glutamyl- ACP complex subunit -D-glucosamine 1-phosphate 1,2-dione a,c-diamide glutamyltransferase: gamma- 2-naphthoate F: IX92_RS02185 CoA thiolase: DusA: reductase: synthase: synthase: α IX92_RS05550 asp amidophosphoribosyltransferase: diphosphate reductase: triphosphate hydrolase: IX92_RS22095 IX92_RS00900 CoA hydroxybutanoate] lysoplasmalogenase: IX92_RS01770 IX92_RS24530 a (1,6)- -D- IX92_RS08225 IMP asp imidazole ribonucleotide purine-nucleoside [tRNA Glu ] tRNA 5- (S)-3-hydroxy-(7Z) alpha FadB: IX92_RS00570 synthase: polyprenyltransferase: adenylyltransferase IX92_RS27450 IX92_RS19780 a nucleoside IMP purine-nucleoside deaminase: IX92_RS03670 IX92_RS08220 IX92_RS05550 purine-nucleoside uracil reductase a 1-acyl-sn 3D-(3,5/4)- adenosyltransferase: [+ 6 isozymes] IX92_RS14340 a 2'- IX92_RS28230 IX92_RS28230 glucosyl-(1,4) synthase: IX92_RS15765 phosphorylase: β -hexadecenoyl-CoA bifunctional UDP-N- IX92_RS00830 IX92_RS15115 PcnB: IX92_RS12820 diphosphate dUDP IMP phosphorylase: IX92_RS06240 5-phospho- - CDP phosphorylase: FabG: fabG -glycerol 3- methoxyuridine(34) IX92_RS00105 trihydroxycyclohexane- IX92_RS10480 IX92_RS14060 20 deoxyribonucleoside a cis-methoxy- a cis-keto-C60- α predicted dehydrogenase: dCMP IX92_RS08225 glutamyl-tRNA class I poly(R)- acetylglucosamine β-D-glucose a uracil in tRNA - -glucan N5-CAIR IX92_RS12170 D-ribosylamine uracil /uridine 5- α RNase III C59-meroacyl-[acp] meroacyl-[acp] ABC IX92_RS02795 adenylosuccinate dehydrogenase: IX92_RS12170 [+ 2 isozymes] dUDP IX92_RS12170 reductase: [+ 2 isozymes] phosphate hydroxyalkanoic fatty acid fatty acid oxidation 1,2-dione acylhydrolase an -(5-L- 4-methyl-3- MeOH 5'-triphosphate Zn 2+ Zn 2+ adenylosuccinate (d)CMP kinase: ribonucleoside- phosphoribosyltransferase: diphosphorylase/ an mRNA fragment processing GlcNAc-1,6- 6-phosphate synthase: IX92_RS02795 purine-nucleoside phosphoribosylamine- a (3R)-3- 1-acyl-sn-glycerol- acid synthase: oxyacetic acid(34) oxidation complex subunit (decyclizing): adenosyl-cob(III) glutamyl)- a peptide sn-glycero-3- a lipid II transporter 5-(carboxyamino) purine-nucleoside IX92_RS04035 nucleoside-diphosphate diphosphate reductase: purine-nucleoside IX92_RS11090 glucosamine-1- a fatty aldehyde met succinate anhydro-MurNAc- a ribonucleic acid oxoadipyl-CoA synthase: phosphorylase: IX92_RS03080 3-phosphate synthase CmoB: IX92_RS08945 yrinate a,c-diamide triphosphate phosphoethanolamine product mRNA DMKH2-11 of Zn2+ XMP IX92_RS14705 imidazole ribonucleotide phosphorylase: 2'-deoxyuridine -glycine ligase: kinase: IX92_RS02300 IX92_RS08220 phosphorylase: (S)-4-amino-5- hydroxyhexadecanoyl- IX92_RS19715 complex subunit alpha FadJ: phosphate N- amino acid pentapeptide XMP IX92_RS14705 dCDP IX92_RS23685 acyltransferase: IX92_RS10010 mutase: IX92_RS15760 IX92_RS23685 IX92_RS14980 IX92_RS08225 IX92_RS23685 UMP oxopentanoate [acp] alpha FadB: IX92_RS03870 acetyltransferase 3D-(3,5/4)- adenosine thymidine adenosine dUTP xanthine 3-hydroxyacyl- IX92_RS02850 poly-[(R)-3- IX92_RS00105 3-[(3aS,4S,5R,7aS)-5-hydroxy- predicted glutamine- adenylo-succinate nucleoside- glutamate-1- GlmU: IX92_RS00070 trihydroxycyclohexane- CAIR GAR dCDP a 5-(carboxymethoxy) 6 ABC glutamine- adenylo-succinate kinase: nucleoside triphosphate [acyl-carrier- 1-acyl-sn-glycerol- hydroxybutanoate] fatty acid 7a-methyl-1-oxo-octahydro-1H- 1,2-dione acylhydrolase core di-trans,octa-cis an O - RNase E mRNA an all-trans- all-trans- a peptide with hydrolyzing diphosphate semialdehyde- 34 an L-1- a [protein]- a [phospholipid]- a [protein]-L- dCDP choline choline IX92_RS10150 adenosine protein] uridine in tRNA UDP-α-D-glucose (R)-mevalonate chitin a cytosine in DNA a uracil 54 in tRNA cyclic-AMP a DNA segment transporter GMP synthase: hydrolyzing adenosine deaminase: thymidine kinase: phosphoribosylglycinamide pyrophosphohydrolase: nucleoside-diphosphate 3-phosphate oxidation inden-4-yl]-3-oxopropanoyl-CoA N-acetyl-α-D-glucosamine 1-phosphate (decyclizing): oligosaccharide- -undecaprenyl methylguanine processing 1,4-dihydroxy- polyisoprenyl tridecaprenyl 1,4-dihydroxy- an N-terminal proline (ω = 180) adenylosuccinate adenylosuccinate phosphoribosylaminoimidazolesuccinocarboxamide deaminase: 2,1-aminomutase: phosphatidylethanolamine L-cysteine palmitoleate ATP ribonucleoside- of choline GMP synthase: IX92_RS04375 IX92_RS01810 kinase: IX92_RS02300 dehydratase acyltransferase: tRNA (cmo5U34)- complex subunit IX92_RS09020 lipid A (E. coli phosphate in DNA substrate 2-naphthoate diphosphate diphosphate 2-naphthoate Xaa-L-proline DNA cytosine tRNA cyclopropane- peptidyl-prolyl recombinase IX92_RS02800 lyase: IX92_RS09570 lyase: synthase: IX92_RS08170 IX92_RS02300 IX92_RS04375 formyltransferase IX92_RS12685 acetyl-CoA C- 3',5'-cyclic-AMP diphosphate IX92_RS02800 adenosine deaminase: dUMP FabZ: IX92_RS01120 methyltransferase: alpha FadJ: bifunctional UDP-N- K-12 core type) methyltransferase: (uridine(54)-C5)- fatty-acyl- cis-trans RecA: IX92_RS09570 thymidine dCTP 1: IX92_RS03070 dUMP dCTP acyltransferase 3-hydroxy-3- beta-N- phosphodiesterase: class I adenylate reductase: IX92_RS15695 adenosine XMP 5-aminolevulinate IX92_RS11850 a 1,2-diacyl- IX92_RS10005 IX92_RS03870 acetylglucosamine 5-deoxy-D-glucuronate O6-methylguanine- IX92_RS25580 methyltransferase phospholipid isomerase: IX92_RS04345 predicted GMP SAICAR thymidylate kinase: Amine and Polyamine FadI: IX92_RS03865 undecaprenyl- ribonuclease E: 1,4-dihydroxy- 1,4-dihydroxy- leucyl methylglutaryl- acetylhexosaminidase: IX92_RS12440 cyclase: IX92_RS08220 AMP GMP deaminase: FGAR thymidylate synthase: sn-glycerol a 5-(methoxycarbonylmethoxy) diphosphorylase/ DNA TrmA: synthase: IX92_RS02065 [+ 2 isozymes] ABC synthase: IX92_RS10150 a (2E)-hexadec- Biosynthesis 3-oxo-(7Z)- phosphoethanolamine phosphate glucose 2-naphthoate 2-naphthoate aminopeptidase: IX92_RS03110 DNA cytosine a DNA segment IX92_RS00710 IX92_RS08225 urea urea IX92_RS15695 IX92_RS02015 delta- 3-phosphate 34 [+ 2 isozymes] 5-deoxy- IX92_RS04210 CoA reductase: transporter guanylate AMP adenylosuccinate inosine 2-enoyl-[acp] uridine in tRNA hexadecenoyl-CoA glucosamine-1- transferase: phosphotransferase: methyltransferase: polyprenyltransferase: polyprenyltransferase: IX92_RS01245 methyltransferase: IX92_RS00940 IX92_RS28230 [+ 9 isozymes] in reverse IX92_RS02015 phosphoribosylformylglycinamidine CDP-diglyceride glucuronate IX92_RS19900 [+ 4 isozymes] a 5-methyluracil 54 AMP a [phospholipid]-8- a [protein]-L- cyclic-AMP CDP of urea adenylate kinase: guanylate dTMP aminolevulinic ectoine biosynthesis phosphate N- IX92_RS11355 IX92_RS04490 IX92_RS14060 IX92_RS26225 kinase: lyase: IX92_RS09570 acetyl-CoA C- 3-[(3aS,4S,5R,7aS)-5-hydroxy- isomerase: IX92_RS22560 IX92_RS14060 (2-hexylcyclopropyl) ω orientation IX92_RS07070 kinase: adenylate kinase: purine-nucleoside inosine synthase: IX92_RS03045 acid synthase: acetyltransferase RNase E a 5-methylcytosine in tRNA proline ( = 0) IX92_RS15490 dTMP kinase: acyltransferase acetyl-CoA 7a-methyl-1-oxo-octahydro- IX92_RS08910 a peptide with N-acetyl-D- octanoate adenylate kinase: IX92_RS15490 IX92_RS07070 AICAR phosphorylase: dehydratase: IX92_RS11880 GlmU: IX92_RS00070 a [protein]-S- an mRNA fragment processing a proteinogenic chitin in DNA his RS24280 his superpathway of pyrimidine IX92_RS04275 1H-indene-4-carboxyl-CoA lipid A-core- α-D-glucopyranosyl- an N-terminal NADPH H + FGAM IX92_RS27445 asp FadA: 5-dehydro-2- a 1,2-diacyl- UMP a guanine in DNA amino acid HMG-CoA glucosamine GDP IX92_RS11420 adenylate kinase: IX92_RS12170 inosine/ a CDP- tRNA processing methyl-L-cysteine product mRNA DMKH DMKH2-13 bifunctional nucleobases salvage dTDP superpathway of guanine and guanosine salvage aspartate IX92_RS00100 UDP-N-acetyl-α-D-glucosamine deoxy-D-gluconate pyrophosphoethanolamine sn-glycerol diphosphoundecaprenol 2 L-proline GDP IX92_RS11420 guanosine kinase: porphobilinogen a palmitoyl-[acp] diacylglycerol purine-nucleoside dTMP phosphoribosylformylglycinamidine [+ 2 isozymes] ADP phosphoribosylaminoimidazolecarboxamide uracil IX92_RS09550 kinase: UDP-N-acetylglucosamine 5-keto-2- phosphorylase: cyclo-ligase: IX92_RS03075 nucleoside-diphosphate synthase: CDP-diacylglycerol-- a polycistronic met RS22035 met formyltransferase/IMP dTMP kinase: uracil IX92_RS28075 (5R,7aS)-5-hydroxy-7a-methyl- deoxygluconokinase ADP IX92_RS23685 inosine/ kinase: IX92_RS02300 IX92_RS00350 glycerol-3-phosphate 3- tRNA precursor (5Z)-tetradecenoyl-CoA 1-carboxyvinyltransferase: a nascent peptidoglycan ADP-L-glycero-β- heptosyl- all-trans- 2,5-dichloro-trans phosphoenol UTP nucleoside- ribonucleoside- ribonucleoside- cyclohydrolase: IX92_RS14975 guanosine [+ 4 isozymes] 1-oxo-3,5,6,7-tetrahydro- B: IX92_RS08930 1,4-dihydroxy- L(or D)-O- ribonucleoside- ribonucleoside- IX92_RS04275 phosphoribosyltransferase: guanosine kinase: AIR phosphatidyltransferase: IX92_RS01115 D-manno-heptose Kdo -lipid A isobutanoate glutathione a phytochelatin GGPP decaprenyl 1,4-dihydroxy- adenosylcobinamide γ-L-glutamyl-(S)- gly canavaninosuccinate a protein (S)-dihydroorotate [DNA] L-dopa nucleoside- ribonucleoside- L-aspartyl- (meso-DAP containing) 2 -dienelactone pyruvate diphosphate diphosphate diphosphate IX92_RS03080 dTTP porphobilinogen 2H-indene-4-carboxyl-CoA [+ 2 isozymes] 2-naphthoate phosphoserine anaerobic diphosphate diphosphate diphosphate diphosphate ribonucleoside- hypoxanthine IX92_RS20740 IX92_RS09245 acyl-CoA UDP-N-acetyl-α-D- diphosphate 2-naphthoate bifunctional 2-aminobutanoate dienelactone dihydroorotase: DNA polymerase pyruvate kinase: reductase: reductase: FAICAR dTDP UMP 4-phosphate ribonuclease E: metalloprotease 4,5-DOPA ribonucleoside- reductase: reductase: palmitate 1-(3-sn- dehydrogenase: glucosamine-enolpyruvate 5-dehydro-2-deoxy-D- adenosylcobinamide hydrolase: IX92_RS18845 III subunit kinase PykF: phosphoserine tyr RS05500 tyr IX92_RS02300 IX92_RS08220 IX92_RS08220 kinase: reductase: diphosphate hydroxymethylbilane IX92_RS04210 ribonuclease E: lytic transglycosylase lipopolysaccharide TldD: IX92_RS13415 dioxygenase nucleoside- purine-nucleoside IX92_RS09695 gluconate 6-phosphate argininosuccinate phosphatase: triphosphate IX92_RS08220 IX92_RS08220 IX92_RS02300 IX92_RS08220 reductase: bifunctional hypoxanthine (d)CMP kinase: IMP adenine and synthase: phosphatidyl) aspartate- UDP-N-acetylmuramate acetate--CoA ligase: phytochelatin 1,4-dihydroxy- 1,4-dihydroxy- kinase/ glutathione IX92_RS16600 metalloprotease dihydroorotase: gamma/tau: IX92_RS13200 IX92_RS08225 IX92_RS08225 IX92_RS04210 F: IX92_RS02185 heptosyltransferase lyase: IX92_RS12160 extradiol: reductase: IX92_RS08225 IX92_RS08225 IX92_RS08220 phosphoribosylaminoimidazolecarboxamide phosphoribosyltransferase: diphosphate IX92_RS04035 phosphorylase: long-chain -sn-glycerol semialdehyde a tRNA precursor [+ 3 isozymes] (5R,7aS)-7a-methyl-1,5- dehydrogenase: IX92_RS14930 synthase: 2-naphthoate adenosylcobinamide- dienelactone IX92_RS23450 IX92_RS03905 pyruvate kinase: ATP IX92_RS08225 pyrimidine adenosine salvage I inosine/guanosine IX92_RS00705 exoribonuclease [+ 5 isozymes] II: IX92_RS15320 2-naphthoate synthase: IX92_RS14205 PmbA: IX92_RS13575 IX92_RS10935 IX92_RS19780 IX92_RS08225 formyltransferase/IMP IX92_RS12860 kinase: UMP kinase: IX92_RS11895 guanine and IX92_RS12170 fatty acid-- 3-phosphate dehydrogenase: with a 5' extension (2E,5Z)- dioxo-3,5,6,7-tetrahydro- IX92_RS15160 IX92_RS08025 polyprenyltransferase: phosphate hydrolase: N-carbamoyl- [+ 7 isozymes] IX92_RS04320 GTP ribonucleosides salvage I kinase: IX92_RS09550 II: IX92_RS22265 polyprenyltransferase: IX92_RS13285 a peptide serine 4,5-seco-dopa tyr RS27160 tyr cyclohydrolase: IX92_RS14975 IX92_RS02300 guanosine salvage II purine-nucleoside preuroporphyrinogen CoA ligase: IX92_RS03635 2H-indene-4-carboxyl-CoA IX92_RS14060 guanylyltransferase: L-aspartate a nucleoside 5'- dUTP dADP GTP UDP inosine/guanosine phosphatidylglycerophosphatase and a long 3' trailer a tRNA precursor with tetradecenoyl-CoA α (heptosyl) - IX92_RS14060 IX92_RS16750 pyruvate dGDP adenosine IX92_RS01650 UDP-N-acetyl- -D-muramate a mature peptidoglycan a nascent peptidoglycan 2 dGDP dADP IMP dTTP cytidine phosphorylase: A: IX92_RS11925 [+ 2 isozymes] a 5' extension and isobutanoyl-CoA IX92_RS06315 2,5-dichloromaleylacetate monophosphate anaerobic kinase: IX92_RS20740 uroporphyrinogen- DHAP 3-oxopropanoate with (L-alanyl-γ-D-glutamyl- (meso-DAP containing) Kdo -lipid A diphosphate L-canavanine fumarate nucleoside-diphosphate purine-nucleoside IX92_RS23685 [+ 2 isozymes] an L-1- a short 3' extension fatty acid enoyl-CoA ADP 2 AMP gly a phytochelatin adenosyl-cobinamide ophthalmate ribonucleoside- IMP guanosine III synthase: L-aspartate 4- UDP-N- meso-2,6-diaminopimeloyl- with GlcNAc terminus tyr RS20825 tyr anaerobic kinase: IX92_RS02300 cytidine phosphorylase: hypoxanthine phosphatidyl- exoribonuclease ribonuclease oxidation hydratase: demethylmenaquinol-4 phosphate nucleoside- triphosphate nucleoside- nucleoside- IX92_RS00700 palmitoyl-CoA semialdehyde ribonuclease D: (3R)-2-(2-carboxyethyl)- acetylmuramate:L-alanyl- malonate D-alanine) tetrapeptide DMKH2-10 ribonucleoside- nucleoside- IX92_RS12170 phosphoribosyltransferase: II: IX92_RS22265 P protein diphosphate kinase: reductase: diphosphate diphosphate CMP UTP deaminase: sn-glycerol IX92_RS04200ribonuclease PH: complex subunit IX92_RS21205 3-methyl-6-oxocyclohex- gamma-D-glutamyl- semialdehyde triphosphate diphosphate purine-nucleoside IX92_RS12860 diaminobutyrate- ribonuclease D: component: IX92_RS02300 IX92_RS19780 kinase: kinase: phosphorylation IX92_RS06240 CMP guanine uroporphyrinogen-III IX92_RS15435 alpha FadB: [+ 2 isozymes] 1-ene-1-carboxyl-CoA meso-diaminopimelate dehydrogenase: reductase: kinase: CTP synthase: pyrG phosphorylase: -2-oxoglutarate IX92_RS04200 IX92_RS02300 guanine [+ 2 isozymes] GMP IX92_RS15980 IX92_RS00105 UDP-N-acetyl- decaprenyl-diphospho-N- 3 6 527 1498 RNase G sulfate RS04550 sulfate IX92_RS02300 CMP ligase: IX92_RS13605 IX92_RS09010 37 an N -methyladenine sn-glycerol a [histone]-N - a guanine a uracil a [phospholipid]- a [protein]- CTP IX92_RS19780 IX92_RS02300 IX92_RS23685 aminotransferase: α-D-glucosamine acetoacetate DMAPP an adenosine succinate a peptide with a a ribonucleoside a tRNA precursor with (S)-3-hydroxy-(5Z) acetylmuramoyl-pentapeptide a charged tRNA a peptidyl-[tRNA] in DNA acetyl-L-lysine in 16S rRNA degradation oleate thr L-histidine (d)CMP kinase: CTP adenine IX92_RS28070 UDP-N-acetyl-α-D-muramoyl-L-alanyl- in tRNA leader sequence CTP 3-phosphate in 16S rRNA 5'-monophosphate anaerobic dATP hypoxanthine uridine a short 3' extension (3E,5Z)-tetradeca- -tetradecenoyl-CoA acetyl-CoA 16S rRNA 16S rRNA substrate mRNA 5'/3'- cyclopropane- histidine kinase: dATP dGTP IX92_RS04035 9-carboxy-6-methyl-3,7- γ-D-glutamyl-meso-2,6-diaminopimelate ribonuclease E: threonine ribonucleoside- CDP phosphoribosyltransferase: L-2,4- a tRNA precursor 3,5-dienoyl-CoA undecaprenyldiphospho- (guanine(527)-N(7) (uracil(1498)-N(3))- fatty-acyl- uridine kinase: histamine fatty acid ADP-forming succinate- DNA-3- histone IX92_RS04210 nucleotidase ammonia-lyase, IX92_RS03170 triphosphate sulfate RS04435 sulfate IX92_RS12860 adenine diaminobutanoate with a 5' extension dioxononanoyl-CoA muramoylpentapeptide beta-N- acetoacetate--CoA tRNA (adenosine(37)-N6) glycerol-3-phosphate )-methyltransferase methyltransferase: phospholipid IX92_RS10495 biosynthesis acyl-CoA oxidation transpeptidase: -CoA ligase subunit deacetylase: ribonuclease G: SurE: biosynthetic: [+ 11 isozymes] reductase: nucleoside- phosphoribosyltransferase: ribonuclease PH: ribonuclease D: ligase: IX92_RS21760 -dimethylallyltransferase methyladenine signal peptidase cytidylyltransferase: RsmG: IX92_RS13280 synthase: a [protein]- thioesterase II: complex subunit acetylglucosaminyltransferase: beta: IX92_RS03230 IX92_RS10410 an N 3 - IX92_RS13010 IX92_RS15885 IX92_RS19780 diphosphate UMP IX92_RS03900 IX92_RS15435 IX92_RS04200 acetyl-CoA C- IX92_RS21995 MiaA: IX92_RS13810 glycosylase I: I: IX92_RS01765 IX92_RS15260 IX92_RS13430 GMP IX92_RS04480 alpha FadJ: IX92_RS12300 7 IX92_RS00010 1498 IX92_RS28230 N-phospho- kinase: his ribonuclease: acyltransferase C1 Compound Utilization and Assimilation IX92_RS09410 an N - methyluracil an mRNA fragment [+ 3 isozymes] 2-oxobutanoate Secondary Metabolite Biosynthesis a [phospholipid]- L-histidine dCTP sulfate RS11520 sulfate IX92_RS15980 [+ 2 isozymes] IX92_RS03870 methylguanine 527 in 16S rRNA a ribonucleoside dGTP IX92_RS02300 AMP (2S)-4-acetamido- histidine FadI: IX92_RS03865 dihydrosterculate acetoacetyl-CoA 6 37 decarboxylase: (3E,5Z)- fatty acid [+ 2 isozymes] formate assimilation into 5,10- formaldehyde oxidation decaprenyl-pyrophosphoryl- UDP a peptidyl- an uncharged diphosphate N -dimethylallyladenosine phosphate succinyl-CoA acetate a [histone]-L-lysine in 16S rRNA CTP methylerythritol phosphate pathway I 2-aminobutanoate AMP ADP an apurinic site a leader sequence a peptide CDP-glycerol autoinducer AI-2 autoinducer AI-2 biosynthesis I lipoprotein posttranslational tetradecadienoate oxidation (N-acetylglucosamine)-N- aminoacyl-[tRNA] tRNA in tRNA 3-methyladenine ectoine IX92_RS23370 methylenetetrahydrofolate II (glutathione-dependent) within DNA biosynthesis II (Vibrio) histamine complex subunit acetylmuramyl-(pentapeptide) ornithine ornithine D-glyceraldehyde modification 7-carboxy-4-methyl- pyruvate synthase: alpha FadB: acetyl-CoA his his 3-phosphate an uncharged tRNA 5-oxoheptanoyl-CoA formate formaldehyde RS04995 SAM IX92_RS17090 a [prolipoprotein]- IX92_RS00105 lys lys SAM formate--tetrahydrofolate 10 an N-terminal 2498 966 Amino Acid Biosynthesis L-cysteine an L-methionyl- an N - lysine within orotidine 5'- an (R)-2- a cytidine a guanine a [protein] (L-serine/L- long chain (2E,4Z)-deca- arg arg ectoine ligase: IX92_RS19450 an L-arginyl- methyl red an N-acylated- a tripeptide 2-chloroacetate 3-oxo-(5Z)- Met formyltetrahydrofolate gcv protein H an octanoyl-[acp] 3-sulfino-L- Arg halocarboxylate in 23S rRNA in 16S rRNA ala repressor LexA 2,4-dienoyl-CoA 1-deoxy-D- prolipoprotein S-(hydroxymethyl) [initiator tRNA ] [tRNA ] phosphate D-amino acid threonine) phosphate GTP polyphosphate tetradecenoyl-CoA an N 10 -formyltetrahydrofolate alanyl-[protein] 23S rRNA 16S rRNA protein haloacid 2,4-dienoyl- L-histidine biosynthesis xylulose-5- diacylglyceryl (2E)-7-carboxy-4-methyl- glutathione pyridoxal phosphate- polyphosphate his his superpathway of L- superpathway of L-aspartate superpathway of L-methionine L-lysine biosynthesis I L-phenylalanine glycine biosynthesis II superpathway of L-alanine biosynthesis phosphate SAH acetyl-CoA C- (cytidine(2498)-2'-O) (guanine(966)-N(2) phosphatase guanylate cyclase: repressor LexA: dehalogenase CoA superpathway of L-homoserine and L-methionine biosynthesis L-arginine biosynthesis I (via L-ornithine) L-tryptophan biosynthesis SAH 6 37 transferase: FMN-dependent dependent kinase 1: lys RS05005 lys N -L-threonylcarbamoyladenosine 5-oxohept-2-enoyl-CoA bifunctional S-(hydroxymethyl) lipoyl(octanoyl) orotate HAD family peptidase T: -methyltransferase )-methyltransferase IX92_RS05525 type II: reductase: isoleucine biosynthesis I and L-asparagine biosynthesis biosynthesis (by sulfhydrylation) biosynthesis I synthase: IX92_RS02010 acyltransferase methionyl-tRNA NADH- D-aminoacylase: CheZ: aminotransferase: IX92_RS00910 IX92_RS02630 arg arg 5'-methylthioadenosine/ -modified tRNA biosynthesis methylenetetrahydrofolate glutathione transferase LipB: arginyltransferase: phosphoribosyltransferase: hydrolase: IX92_RS21820 RlmM: RsmD: IX92_RS24620 fadH PRPP a [glycine-cleavage 3-methyl-2- IX92_RS03270 5'-methylthioadenosine/ a [prolipoprotein]- FadI: formyltransferase: IX92_RS03760 IX92_RS04400 guanylate cyclase: 6 chorismate dehydrogenase/ dehydrogenase/ IX92_RS11630 IX92_RS10140 IX92_RS16825 azoreductase: IX92_RS16330 long chain (2E)-dec-2- asp complex H protein] N - asp glu S-adenosylhomocysteine IX92_RS15430 IX92_RS03315 2 IX92_RS00850 cleaved oxaloacetate glu oxaloacetate chorismate oxobutanoate S-adenosylhomocysteine S-1,2-diacyl-sn- IX92_RS03865 IX92_RS15790 IX92_RS24215 a 2-O- an N - a [protein] Ser/Thr pyruvate IX92_RS27255 polyphosphate glycolate ATP aspartate glycine cleavageaminomethyldihydrolipoyl- glycine cleavage cys nucleosidase: methenyltetrahydrofolate class III alcohol [+ 2 isozymes] cyclic-GMP repressor LexA enoyl-CoA aspartate/ bifunctional branched-chain- 1-deoxy-D-xylulose ATP glyceryl-L-cysteine [+ 2 isozymes] (3R)-7-carboxy-3-hydroxy-4- methylcytidine 2498 methylguanine 966 nitrate RS21070 nitrate phosphoribosyltransferase: fumarate system protein anthranilate nucleosidase: thr cyclohydrolase dehydrogenase: a [glycine-cleavage tyrosine/aromatic aspartate/ kinase: chorismate mutase/ system protein L-lysine aspartate kinase: amino-acid N- 5-phosphate IX92_RS01940 an N-terminal L- orotate a proteinogenic a dipeptide IX92_RS09535 R: IX92_RS11000 synthase amino-acid IX92_RS01940 (3Z)-dodec- methyl-5-oxoheptanoyl-CoA an N-formyl- complex H protein] in 23S rRNA in 16S rRNA tyrosine/aromatic IX92_RS28075 R: IX92_RS11000 IX92_RS28075 acetyltransferase: lipoprotein FolD: IX92_RS03920 IX92_RS18665 a tetrahydrofolate acyl-carrier protein a tRNA Arg arginiyl-3-sulfino- PRPP N,N-dimethyl-1,4- a carboxylate amino acid aminotransferase: aspartate/ prephenate transaminase: 1-deoxy-D-xylulose- 3-enoyl-CoA L-methionyl- 6 an (S)-2- anthranilate a D-amino acid aminotransferase: [+ 2 isozymes] component 1: S-ribosyl-L-homocysteine fatty acid oxidation N -octanoyl-L-lysine a halide anion 1-(5-phospho- IX92_RS05460 [+ 4 isozymes] dehydrogenase: [+ 3 isozymes] [+ 4 isozymes] IX92_RS02715 IscS subfamily S-ribosyl-L-homocysteine signal peptidase: met L-alanyl-[protein] hydroxycarboxylate phenylenediamine tyrosine/aromatic aspartate gly IX92_RS05330 IX92_RS15875 5-phosphate threonylcarbamoyl- fatty acid complex subunit a 5,10-methenyltetrahydrofolate S-formylglutathione [initiator tRNA ] sulfite RS18740 sulfite β-D-ribosyl)-ATP IX92_RS05460 tyrA cysteine IX92_RS02060 aspartate/ aminotransferase: ammonia-lyase: L-aspartyl-4-phosphate N-acetyl-L- reductoisomerase: alpha FadB: aminodeoxychorismate/ desulfurase: pyruvate S-ribosylhomocysteine AMP synthase: oxidation bifunctional tyrosine/aromatic IX92_RS05460 IX92_RS14835 aspartate/ prephenate L-aspartyl-4-phosphate glutamate val IX92_RS11875 S-ribosylhomocysteine methylenetetrahydrofolate S-formylglutathione IX92_RS05345 an (S-diacyl-sn- complex subunit IX92_RS00105 a [glycine-cleavage an N-terminal an N-acetyl-β- 18 1207 an [amino group carrier RNase II anthranilate synthase IX92_RS02260 lyase: IX92_RS01375 a lipoprotein dehydrogenase: hydrolase: a proteinogenic an L-arginyl- an (S)-2- a guanosine a guanine long chain a (2E,4E)- phosphoribosyl- aminotransferase: aspartate/ tyrosine/aromatic aspartate- a [glycine-cleavage lyase: IX92_RS01375 complex H protein] leukotriene-C4 oxythiamine coenzyme A protein]-C-terminal-γ- (S)-5-hydroxyisourate phytol class II prephenate acetylglutamate component II: threonylcarbamoyl- glyceryl)-L-cysteinyl- alpha FadB: fatty acid oxidation a sulfurated [sulfur carrier] SAM 3-sulfo-L- Arg VibB D-hexosaminide degradation met aminotransferase: a [glycine-cleavage complex 6 aspartate-semialdehyde cysteine signal peptide IX92_RS03920 IX92_RS18660 amino acid [tRNA ] halocarboxylate in tRNA in 16S rRNA purine polyphosphate dienoyl-CoA AMP IX92_RS19790 tyrosine/aromatic semialdehyde complex H protein] N pyridoxal phosphate- MEP N 6 -octanoyl-L-lysine (L-glutamyl)-L-glutamate fumarate dehydratase: 6 kinase: IX92_RS14785 AI-2 AMP synthase: [apolipoprotein] IX92_RS00105 complex subunit alanyl-[protein] tRNA 16S rRNA hydroxyisourate substrate mRNA NADH-dependent 2,4-dienoyl- cyclohydrolase/ IX92_RS19790 H protein] N -lipoyl-L-lysine dehydrogenase: desulfurase dependent valine--pyruvate AI-2 acetylglutamate amino-acid N- polyphosphate asp aminotransferase: hydratase: dehydrogenase: -dihydrolipoyl-L-lysine IX92_RS14215 apolipoprotein N- alpha FadJ: (guanosine(18)-2'-O) (guanine(1207)-N(2) xanthine alcohol CoA IX92_RS02175 IX92_RS03635 CsdA: transaminase: 2-C-methyl-D- IX92_RS15755 (2E)-dodec- a 5,10-methylenetetrahydrofolate formate beta-N- hydrolase: exoribonuclease kinase 2: phosphoribosyl- IX92_RS19790 IX92_RS03635 anthranilate aminotransferase: thiaminase II: HAD family holo-ACP )-methyltransferase kinase: dehydrogenase: acetyltransferase: dehydrogenase: reductase: aspA 3-phenyl-2- N-acetylglutamyl- acyltransferase: 2-enoyl-CoA IX92_RS03870 gamma- acetylhexosaminidase: -methyltransferase IX92_RS16475 II: IX92_RS22265 ATP asp [+ 2 isozymes] IX92_RS12145 IX92_RS04400 IX92_RS15930 erythritol 4-phosphate lipoyl synthase: arginyltransferase: hydrolase: synthase: IX92_RS14215 IX92_RS02715 IX92_RS02655 aspartate [+ 2 isozymes] oxopropanoate (L-threonylcarbamoyl) IX92_RS11570 glutamyltransferase: IX92_RS24455 TrmH: RsmC: an [amino group carrier (S)-2-oxo-4- IX92_RS16545 IX92_RS20665 fadH diphosphatase phosphate anthranilate cytidylyltransferase: preQ biosynthesis fatty acid 7-carboxy-4-methyl-3,5- IX92_RS11635 IX92_RS10140 IX92_RS16825 IX92_RS03110 long chain a (2E)-2- kinase: 0 an N-acyl-(S-diacyl- a peptide IX92_RS01790 IX92_RS15505 IX92_RS12695 hydroxy-4-carboxy- a nucleoside 5'- IX92_RS16550 N-acetyl-L- aspartate L-aspartate 4- aspartate/ glycine cleavage L-aspartate 4-semialdehyde phosphoribosyltransferase: IX92_RS13025 (2R,4S)-2-methyl-2,4- adenylate oxidation dioxoheptanoyl-CoA IX92_RS00570 [+ 4 isozymes] a 2'-O- an N 2 - protein]-C-terminal- phytenal HisIE: IX92_RS28075 asp N-acetyl- (2S,4S)-2-methyl-2,4- sn-glyceryl)-L- [+ 2 isozymes] 5-ureidoimidazoline monophosphate 8-hydroxypurine methionine polyphosphate enoyl-CoA semialdehyde dihydroxydihydrofuran-3-one 18 1207 γ IX92_RS09500 kinase: tyrosine/aromatic system protein gamma-glutamyl- IX92_RS05320 ala 4-(cytidine 5'- tRNA (adenosine(37)-N6)- complex subunit 5-(hydroxymethyl) 5-(2-hydroxyethyl) methylguanosine methylguanine -(5-phospho-L- [+ 4 isozymes] dihydroxydihydrofuran-3-one cysteinyl-[lipoprotein] a [glycine-cleavage an N-terminal L- IX92_RS28075 aminotransferase: R: IX92_RS11000 bifunctional aspartate N-(5- diphospho)-2-C- threonylcarbamoyltransferase alpha FadJ: acetyl-CoA C- Amine and Polyamine Degradation α γ -2-methyl-4(1H) a holo-[VibB aryl- β in tRNA in 16S rRNA glutamyl)-L-glutamate β asparagine 4-hydroxy- phosphate ammonia GTP an unsulfurated an -( -L-glutamyl) Arg -4-methylthiazole 3',5'-ADP an N-acetyl- - 1-(5-phospho- - 5'-deoxyadenosine met complex H protein] leukotriene-D4 a tRNA arginiyl-3-sulfo- an (S)-2- carrier protein] L-aspartyl- synthase [+ 4 isozymes] tetrahydrodipicolinate IX92_RS19790 [+ 4 isozymes] kinase/homoserine reductase: phosphoribosyl) assimilation cycle III methyl-D-erythritol complex dimerization subunit IX92_RS03870 acyltransferase [sulfur carrier] -L-amino acid -pyrimidinone a halide anion an alcohol D-hexosamine D-ribosyl)-AMP GTP N 6 -lipoyl-L-lysine L-alanyl-[protein] hydroxycarboxylate 4-phosphate synthase: dehydrogenase IX92_RS14220 -anthranilate 4-(cytidine 5'- type 1 TsaB: IX92_RS04175 [+ 2 isozymes] FadI: IX92_RS03865 B: asnB aspartate/ cyclohydrolase N-acetylglucosamine choline degradation I bifunctional L-aspartyl- sulfate I: IX92_RS01910 bifunctional indole-3-glycerol- diphospho)- (2S,4S)-2-methyl-2,3,3,4- (2R,4S)-2-methyl-2,3,3,4- [+ 2 isozymes] allantoin degradation 4-aminobutanoate superpathway of 4- IX92_RS10995 tyrosine/aromatic N-acetyl-L- glu I FolE: [+ 2 isozymes] (S)-3- degradation II phosphoribosyl- aspartate- 4-phosphate (2S,4S)-4- phosphate synthase TrpC/ ammonium 2-C-methyl-D- tetrahydroxytetrahydrofuran 6 5-oxo-L-proline metabolism to glyoxylate I degradation III aminobutanoate degradation asn bifunctional aspartate glutamate 5- tetrahydroxytetrahydrofuran an N -L- 7,8- cytidine 2',3'-cyclic 967 sulfate aminotransferase: superpathway of L- IX92_RS20845 hydroxydodecanoyl-CoA N-acetyl-D- an N-arachidonoyl-1-acyl-2- an (S)-2- a single- a cytosine a supercoiled a (2E,4Z)- AMP semialdehyde hydroxy-2,3,4,5- phosphoribosylanthranilate erythritol kinase: threonylcarbamoyladenine 37 5-carboxy-2-methyl- choline a [2-oxoglutarate-dehydrogenase a proteinogenic glutathione NaMN 3'-AMP coniferaldehyde thiosulfate aspartate- IX92_RS05460 kinase/homoserine semialdehyde asparagine biosynthesis a [protein] with a [protein] with glucosamine a sulfurated [sulfur carrier] SAM dihydroneopterin lysophosphatidylethanolamine halocarboxylate stranded RNA monophosphate in 16S rRNA mutated tRNA Hyp duplex DNA dienoyl-CoA dehydrogenase: adenylyltransferase: GTP fatty acid acetyl-CoA (S)-(+)-allantoin 4-aminobutanoate 4-aminobutanoate E2 protein] N 6 -octanoyl-L-lysine amino acid hypoxanthine cyclohydrolase/ tetrahydrodipicolinate dehydrogenase II: metL N-acetylornithine isomerase TrpF: IX92_RS11100 in tRNA 3-oxopentanoyl-CoA N-acetylglucosamine choline 3'-triphosphate 2',3'-cyclic-nucleotide coniferyl aldehyde ATP-dependent thiosulfate L-asparaginase semialdehyde glutamate-- an N-terminal an N-terminal allantoinase 16S rRNA bifunctional 2,4-dienoyl- phosphoribosyl- IX92_RS03635 IX92_RS14495 4-hydroxy- aminotransferase: IX92_RS05315 2-phospho-4-(cytidine cyclohydrolase oxidation kinase: aspartate aspartate dehydrogenase: 2'-phosphodiesterase: 2',3'-cyclic-nucleotide hydroxyproline- 1: IX92_RS04145 dehydrogenase: phe ammonia ligase: (2S,4S)-2-methyl-2,3,3,4- L-glutamine L-glutamate (cytosine(967)-C(5) metallophosphatase/ dehydrogenase: exoribonuclease xanthine helicase: sulfurtransferase CoA ATP [+ 2 isozymes] IX92_RS14500 1-(2- asp 5'-diphospho)-2-C- I FolE: complex subunit PuuE: aminotransferase aminotransferase IX92_RS19270 HAD family polyribonucleotide 2'-phosphodiesterase: 2-epimerase: IX92_RS03635 tetrahydrodipicolinate L-homoserine IX92_RS14780 IX92_RS15675 IX92_RS02095 lysophospholipase: IX92_RS14510 )-methyltransferase 5'-nucleotidase: IX92_RS10035 dehydrogenase: IX92_RS02915 GlpE: reductase: methyl-D-erythritol tetrahydroxytetrahydrofuran- 7,8- IX92_RS10470 aerobactin biosynthesis alpha FadJ: IX92_RS16480 family protein: family protein: gamma- 6-pyruvoyltetrahydropterin hydrolase: nucleotidyltransferase: IX92_RS14510 II: IX92_RS22265 diphosphatase sulfate reductase: carboxyphenylamino) [+ 2 isozymes] betaine aldehyde lipoyl synthase: IX92_RS00775 multifunctional [+ 2 isozymes] IX92_RS16545 IX92_RS23565 [+ 10 isozymes] IX92_RS00875 fadH L-aspartate 4- asp [+ 2 isozymes] hydrogencarbonate N-acetyl-L- 2-C-methyl-D- borate dihydroneopterin IX92_RS03870 N-acetyl-D- allantoate glutamyltransferase: RsmB: IX92_RS20080 HisIE: adenylyltransferase: IX92_RS12260 -1-deoxy-D-ribulose IX92_RS21615 IX92_RS21615 IX92_RS11635 synthase: IX92_RS16850 IX92_RS16825 IX92_RS01950 a nucleoside 5'- (4R)-4-hydroxy- a single a (2E)-2- semialdehyde ornithine asparagine asparagine 3'-triphosphate glucosamine succinate succinate betaine aldehyde IX92_RS00570 CCA addition/ IX92_RS15795 [+ 2 isozymes] ferulate IX92_RS16550 sulfite erythritol 2,4- propanoyl-CoA succinyl-CoA 967 adenosine 6,8- IX92_RS09500 L-aspartate 4- IX92_RS23820 (S)-2,3,4,5- homoserine O- carbamoyl- 5-phosphate gln fatty acid semialdehyde semialdehyde [+ 5 isozymes] repair protein: a 5-methylcytosine β-D- monophosphate D-proline stranded DNA enoyl-CoA bifunctional bifunctional indole-3-glycerol- synthase synthase cyclodiphosphate lys a [protein] with 6-phosphate allantoicase: dehydrogenase: sn-glycero-3-phospho- dihydroxypurine 1-(5-phospho-β-D-ribosyl)- semialdehyde tetrahydrodipicolinate succinyltransferase: phosphate acetylornithine γ-L-glutamyl oxidation (6R)-6-pyruvoyl- a single- IX92_RS01835 in 16S rRNA ribosylnicotinate APS B: asnB B: asnB synthase: lysine 6- an N-terminal 5- N-acetylglucosamine- IX92_RS16490 NAD-dependent NAD-dependent NAD-dependent IX92_RS19270 a [2-oxoglutarate dehydrogenase N-(arachidonoyl) a fatty acid a nucleoside 5-[(5-phosphoribosylamino) aspartate kinase/ IX92_RS06480 synthase: carB deacetylase: phosphate synthase TrpC/ glutamate 5-phosphate glutathione complex subunit 5'-deoxyadenosine an α-(γ-L-glutamyl) bifunctional 2,3,4,5- oxo-L-proline succinate- succinate- met 6 an unsulfurated [sulfur carrier] L-cysteinylglycine 5,6,7,8- triphosphate a (2R)-2- stranded RNA 3'-cmp homoserine IX92_RS14225 phosphoribosylanthranilate IX92_RS13020 monooxygenase: 6-phosphate succinate- E2 protein] N -lipoyl-L-lysine -L-amino acid ethanolamine a halide anion diphosphate methylideneamino]imidazole- aspartate kinase/ adenylyl- cys IX92_RS12255 synthase: gltD 6-carboxy-5,6,7,8- alpha FadB: (S)-ureidoglycolate glycine betaine tetrahydropterin tetrahydropyridine- superpathway of branched chain amino acid biosynthesis 6 IX92_RS17060 deacetylase: semialdehyde semialdehyde semialdehyde hydroxy fatty acid dehydrogenase isomerase TrpF: N -hydroxy- IX92_RS00105 4-carboxamide homoserine sulfate kinase: 2,6-dicarboxylate N- carbamoyl asn asn IX92_RS12490 2-C-methyl-D-erythritol- tetrahydropterin dehydrogenase: dehydrogenase: I: IX92_RS01910 O-succinyl-L-homoserine L-ornithine IX92_RS05315 L-lysine fatty acid β-oxidation I (generic) IX92_RS03135 dehydrogenase: 1-(5-phosphoribosyl) dehydrogenase IX92_RS14485 (1S,2R)-1- 2,4-cyclodiphosphate 7-carboxy-7- ureidoglycolate succinyltransferase: phosphate 3-oxododecanoyl-CoA D-glucosamine gabD gabD gabD bifunctional pyruvate glu 6 lyase: a [pyruvate dehydrogenase E2 an N-arachidonoyl-2-acyl-1- an (R)-2- uridine 2'3'-cyclic adenine 1618 a [release factor]- a uridine 65 6,8- -5-((5- I: IX92_RS01910 IX92_RS02525 thr C-(indol-3- flavodoxin- deazaguanine N -hydroxylysine N seleno-L- glutathione a ribonucleoside a single an oligopeptide roseoflavin PAPS 6-phosphate 6 hypoglycin A monophosphate 3'-GMP palmitoleate (R)-glycerate L-dopa phosphoribosylamino) aspartate kinase/ yl)glycerol synthase QueE: -acetyltransferase: 5-oxo-L-proline a (3Z)-alk-3-enoyl-CoA IX92_RS16495 succinate succinate a sulfurated [sulfur carrier] SAM protein] N -octanoyl-L-lysine lysophosphatidylethanolamine halocarboxylate triphosphate in 23S rRNA L-glutamine in tRNA dihydroxypurine bifunctional N-succinyl-2-amino- acetolactate cystathionine gamma- ornithine dependent (E) acetyl-CoA C- homocysteine stranded DNA 2',3'-cyclic-nucleotide 23S rRNA peptide chain tRNA xanthine bifunctional 9-hexadecenoic 2-hydroxy-3- methylideneamino) homoserine superpathway of L-methionine biosynthesis (transsulfuration) IX92_RS17050 urea 5-methyltetrahydropteroyltriglutamate- phosphoadenylyl- threonine synthase AlsS: synthase: IX92_RS15115 carbamoyltransferase: 3-phosphate -4-hydroxy-3- IX92_RS06700 5-oxo-L- acyltransferase glyoxylate 2'-phosphodiesterase: 2',3'-cyclic-nucleotide oligopeptidase aromatic acid dehydrogenase aspartate kinase/ 6-ketopimelate degradation II - homocysteine S- (adenine(1618)-N(6) release factor pseudouridine(65) dehydrogenase: riboflavin kinase/ acid cis-trans oxopropionate imidazole-4- ammonia-lyase, tryptophan 6 6 2'-phosphodiesterase: homoserine sulfate reductase: IX92_RS27325 IX92_RS01190 methylbut-2-enyl- 7-carboxy-7- N -acetyl-N - prolinase: FadA: fatty acid oxidation lysophospholipase: HAD family IX92_RS14510 )-methyltransferase N(5)-glutamine synthase TruC: B: IX92_RS04630 IX92_RS16545 FAD synthetase: isomerase: reductase: decarboxylase: carboxamide isomerase: II: metL oxaloacetate biosynthetic: synthase: myo-inositol α-D-glucosamine methyltransferase: IX92_RS05115 gamma- DNA primase: IX92_RS14510 dehydrogenase IX92_RS14310 [+ 2 isozymes] S-adenosyl-L-methionine cycle I diphosphate deazaguanine hydroxy-L-lysine IX92_RS00815 IX92_RS00100 complex subunit urea lipoyl synthase: IX92_RS00775 hydrolase: RlmF: IX92_RS06460 methyltransferase: IX92_RS03265 IX92_RS16550 IX92_RS02050 IX92_RS19460 IX92_RS16185 IX92_RS13600 IX92_RS09510 IX92_RS15885 IX92_RS05305 biosynthesis 6-phosphate 5-methyltetrahydropteroyltriglutamate- glutamyltransferase: IX92_RS13075 multifunctional an N 6 - II: metL L-cystathionine synthase: 7-cyano-7- [+ 2 isozymes] alpha FadB: IX92_RS11635 IX92_RS16825 a pseudouridine 65 roseoflavin tartronate L-homoserine aspartate/tyrosine/ sulfite N(2)-citryl-N(6) urease: IX92_RS00570 CCA addition/ 1618 IX92_RS11080 a peptide urate palmitelaidate dopamine N-succinyl-L,L-2,6- (2Z)-2-aminobut- (S)-2-acetolactate asp L-citrulline IX92_RS05310 IX92_RS02750 D-glucopyranose IX92_RS00105 glucosamine- - homocysteine methyladenine 5 guanosine phosphoribulosylformimino- aromatic aminotransferase: deazaguanine -acetyl-N(6)- glu IX92_RS16245 [+ 2 isozymes] repair protein: a [release factor]-N in tRNA 5'-phosphate semialdehyde diaminopimelate 2-enoate SAM (E)-4-hydroxy-3- decanoyl-CoA fatty acid oxidation 6-phosphate methyltransferase: IX92_RS05920 sn-glycero-3-phospho- in 23S rRNA AICAR-phosphate homoserine IX92_RS05460 L-homoserine assimilatory ser synthase QueC: 6-phosphate IX92_RS16250 IX92_RS01835 -methyl-L-glutamine ketol-acid cystathionine beta- superpathway indole hydroxylysine complex subunit a [pyruvate dehydrogenase N-(arachidonoyl) a fatty acid ssDNA/pppN(pN) kinase: succinyl- methylbut-2-en- IX92_RS06705 a (2E)-2-enoyl-CoA deaminase: 5'-deoxyadenosine SeMet aspartate/tyrosine/ sulfite reductase reductoisomerase: synthase: acyl-CoA IX92_RS16255 met 6 an unsulfurated [sulfur carrier] hypoglycin B L-cysteinylglycine a (2R)-2- hybrid lyase: IX92_RS09395 argininosuccinate of L-threonine alpha FadB: E2 protein] N -lipoyl-L-lysine ethanolamine n -1 3'-UMP IX92_RS01915 homoserine diaminopimelate 1-yl diphosphate IX92_RS17400 a halide anion imidazole aromatic aminotransferase: (NADPH): IX92_RS00400 synthase: methionine 4-hydroxy-3- IX92_RS17045 dehydrogenase: ammonium hydroxy fatty acid acetyltransferase: biosynthesis preQ 1 Ins(3)P IX92_RS00105 desuccinylase: tryptophan 0 N -citryl-N glycerol O-phospho- IX92_RS19790 IX92_RS14315 (2R)-2,3- IX92_RS14210 adenosyltransferase: methylbut-2-enyl IX92_RS21210 F6P IX92_RS20115 6 6 phosphate IX92_RS14320 IX92_RS03365 2-iminobutanoate dihydroxy-3- 2-aminoprop-2-enoate oxaloacetate synthase: diphosphate -acetyl-N - periplasmic disulfide bond formation fatty acid oxidation L-homoserine L-homocysteine IX92_RS13260 inositol-1- [+ 3 isozymes] enoyl-CoA aspartate/ IX92_RS05305 hydroxy-L-lysine complex subunit a 2,3,4-saturated (3R UDP-N-acetyl-α-D-glucosamine undecaprenyl-diphospho-N an N-terminal L- RNase R degradation adenine 2030 a cytidine 1402 a [protein]-α- a uridine 13 a [phospholipid]- synthase: asp O-acetyl-L- methylbutanoate L-arginino- reductase: two reduced a 2,3,4-saturated fatty acid hydratase: an L-arginyl- coenzyme A [EntF L-seryl- acetoacetate succinyl-CoA a ribonucleic acid a 9S rRNA an oligopeptide acetaldehyde 5-hydroxy- threonine hydrogen sulfide L,L-diaminopimelate IX92_RS05310 monophosphatase: a [DsbA protein] a [DsbB protein] long-chain-fatty-acid- acyl-CoA alpha FadJ: -acetylmuramoyl-L-alanyl-γ- D-arginine D-serine IX92_RS09505 homoserine dihydroxy-acid 5-methyltetrahydropteroyltriglutamate- tyrosine/aromatic IX92_RS02070 aerobactin an electron- (2E)-dec-2-enoyl-CoA IX92_RS21205 )-3-hydroxyacyl-CoA aspartyl-[protein] [tRNA Arg ] carrier protein] substrate RNA in 23S rRNA in 16S rRNA L-glutamate in tRNA palmitoleate succinate met SAH 4-hydroxy-3- IX92_RS02245 cysteine residues carrying a with reduced L- -CoA ligase FadD: L-tryptophan IX92_RS09515 synthase: dehydratase: methionine synthase: aminotransferase: synthase: transfer quinone dehydrogenase: IX92_RS03870 D-glutamyl-L-lysyl- D-alanine 23S rRNA 16S rRNA protein-glutamate O- tRNA 9-hexadecenoic aldehyde aspartate kinase: - homocysteine S- methylbut-2-enyl IPP in a protein disulfide bond [+ 2 isozymes] oligopeptidase D-amino acid aromatic acid D-serine IX92_RS01920 diaminopimelate argininosuccinate IX92_RS05460 5'-methylthioadenosine/ IX92_RS17055 cysteine residues fatty acid IX92_RS04195 IX92_RS09695 (adenine(2030)-N(6) (cytidine(1402)-2'-O) methyltransferase pseudouridine(13) acid cis-trans dehydrogenase IX92_RS28075 O-acetylhomoserine IX92_RS15880 methyltransferase: IX92_RS05115 IX92_RS01020 diphosphate myo-inositol undecaprenyldiphospho- succinyl-CoA-- dehydrogenase decarboxylase: epimerase: 2-oxobutanoate 2-iminopropanoate lyase: trp S-adenosylhomocysteine oxidation [+ 2 isozymes] holo-ACP ribonuclease R: ribonuclease PH: ribonuclease E: )-methyltransferase -methyltransferase: CheR: synthase TruD: A: IX92_RS00530 isomerase: (NADP(+)): ammonia-lyase: D-erythro-1- 3-methyl-2- [+ 2 isozymes] aspartate/ 5-methyltetrahydropteroyltriglutamate- reductase: [+ 3 isozymes] a 2,3,4-saturated (3S muramoylpentapeptide beta-N- arginyltransferase: small subunit: AICAR thr [+ 4 isozymes] aminocarboxypropyltransferase/ IX92_RS00730 IX92_RS14205 nucleosidase: aerobactin complex subunit a 2,3,4-saturated fatty acyl CoA fatty acid oxidation synthase: 3-ketoacid-CoA IX92_RS13600 IX92_RS20760 (imidazol-4- isopentenyl- IX92_RS14690 IX92_RS15435 IX92_RS04210 6 RlmJ: IX92_RS00525 IX92_RS12345 IX92_RS24680 IX92_RS13015 IX92_RS19460 IX92_RS23570 - homocysteine S- )-3-hydroxyacyl-CoA acetylglucosaminyltransferase: IX92_RS10140 an N - a 2'-O- a [protein]-L- 13 IX92_RS02820 cysteine synthase: IX92_RS02840 acetolactate oxobutanoate tyrosine/aromatic IX92_RS01940 IX92_RS02070 alpha FadJ: complex subunit IX92_RS01790 transferase: a pseudouridine a [phospholipid]- yl)-glycerol diphosphate 2030 1402 5 a peptide 5-guanidino-2- acetate serotonin pyruvate threonine L-aspartyl-4-phosphate meso-diaminopimelate synthase AlsS: met aminotransferase: methyltransferase: IX92_RS05115 alpha FadB: IX92_RS12300 IX92_RS08985 methyladenine methylcytidine glutamate-O in tRNA palmitelaidate arg Delta-isomerase: IX92_RS03870 oxopentanoate 3-phosphate IX92_RS27325 2-isopropylmalate branched-chain- IX92_RS19790 [+ 2 isozymes] S-ribosyl-L- an N-terminal in 23S rRNA in 16S rRNA -methyl-ester ammonia-lyase, L-homocysteine [+ 2 isozymes] IX92_RS00105 ditrans,octacis-undecaprenyldiphospho- a holo-[EntF a nucleoside 5'- a nucleoside bifunctional L-homocysteine diaminopimelate homocysteine IX92_RS19940 DsbA family UDP a tRNA Arg L-arginiyl-L- a diribonucleotide a ribonucleic acid a 5S rRNA an rRNA fragment biosynthetic: aspartate-semialdehyde [+ 2 isozymes] synthase: amino-acid pyruvate asp L-proline coenzyme A 3',5'-ADP L-seryl-carrier monophosphate diphosphate histidinol- (S)-3- fatty acid oxidation N-acetyl-(N-acetylglucosaminyl)muramoyl- aspartyl-[protein] IX92_RS15885 dehydrogenase: decarboxylase: (S)-2-aceto-2- IX92_RS01625 transaminase: oxidoreductase: protein] acetoacetyl-CoA succinate phosphatase/ biosynthesis I hydroxydecanoyl-CoA complex subunit L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine IX92_RS03635 5-methyltetrahydropteroyltriglutamate- IX92_RS00725 IX92_RS15875 aspartate IX92_RS18890 imidazoleglycerol- (2Z)-2-aminobut- methionine hydroxybutanoate (from L-glutamate) DMAPP alpha FadJ: [+ 2 isozymes] - homocysteine S- (2S)-2- superpathway of L-serine kinase: S-ribosylhomocysteine fatty acid phosphate 2-enoate synthase: lys ketol-acid L-cysteine biosynthesis IX92_RS03870 methyltransferase: IX92_RS05115 isopropylmalate and glycine biosynthesis I IX92_RS28075 glu oxidation a [formate C 7,8-dihydrofolate 2604 1402 (S)-2-oxo-4- a negatively IX92_RS01020 reductoisomerase: VI (from L-methionine) lyase: IX92_RS01375 acetyl-CoA C- an N-terminal L- + a uridine a cytidine (2R,3S)-3- L-malic α-amylose orotidine 5'- dehydratase HisB: val L-tyrosine biosynthesis I a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated 3-oxoacyl-CoA an L-arginyl- [DNA] NADPH H coenzyme A fumarate a primary alcohol hydroxy-4-carboxy- L-aspartate 4-semialdehyde [+ 2 isozymes] 3-isopropylmalate glutamate complex subunit acetyltransferase]-glycine a reduced flavodoxin SAM Arg monoglutamate asp L-homoserine supercoiled DNA IX92_RS09520 IX92_RS00400 3-phospho- [+ 4 isozymes] acyltransferase glutamyl-[protein] [tRNA ] dAMP in 23S rRNA in 16S rRNA isopropylmalate semialdehyde phosphate dehydratase: 5-kinase: alpha FadJ: 23S rRNA 16S rRNA NADH-dependent 3-isopropylmalate 5-ureidoimidazoline type I DNA aldehyde 1,4-alpha-glucan 3-(imidazol-4- (R)-2,3-dihydroxy- met (R)-glycerate FadI: IX92_RS03865 cysteine OHCU orotidine-5'- met IX92_RS01610 3-phosphoglycerate L-aspartyl- IX92_RS03870 pseudouridine(2604) (cytosine(1402)-N(4) alcohol dehydratase: topoisomerase: dehydrogenase branching yl)-2-oxopropyl 2-iminobutanoate bifunctional aspartate 3-methylpentanoate methionine chorismate γ-L-glutamylIX92_RS11970 [+ 2 isozymes] dihydrofolate desulfhydrase: tnaA phosphate dehydrogenase: 4-phosphate a [DsbA protein] a [DsbB protein] pyruvate formate exodeoxyribonuclease CoA pyrophosphatase: L-aspartate 5'-deoxynucleotidase: synthase RluF: )-methyltransferase: dehydrogenase: IX92_RS01610 decarboxylase: IX92_RS10115 (NADP(+)): protein GlgB: kinase/homoserine IX92_RS01615 adenosyltransferase: bifunctional 5-phosphate an intra- an electron- fatty acid arginyltransferase: reductase: decarboxylase: phosphate dihydroxy-acid IX92_RS22390 with reduced L- carrying a lyase 1-activating oxidase: IX92_RS04395 cysteine IX92_RS16485 IX92_RS16685 dehydrogenase L-methionine biosynthesis II (plants) chorismate mutase/ protein disulfide transfer quinol I: IX92_RS06255 IX92_RS05520 IX92_RS03085 4 IX92_RS12340 IX92_RS20665 IX92_RS01615 [+ 3 isozymes] IX92_RS23570 IX92_RS13260 aspartate- L-cysteine biosynthesis I oxidation IX92_RS10140 IX92_RS23375 2604 an N - IX92_RS04060 histidinol- dehydratase: 2-isopropylmaleate glutamate-5- cysteine residues disulfide bond protein: pflA IX92_RS01735 a pseudouridine desulfhydrase: tnaA (2S)-2- amylopectin I: IX92_RS01910 SAM phosphoglycerate prephenate semialdehyde complex subunit methylcytidine 1402 an aldehyde (S)-(+)-allantoin a relaxed DNA (S)-malate UMP phosphate IX92_RS15880 semialdehyde in 23S rRNA 2-oxobutanoate isopropylmalate bifunctional aspartate dehydrogenase: dehydrogenase: dehydrogenase: alpha FadB: an N-terminal a 2'- 2'-deoxyadenosine in 16S rRNA transaminase: L-homoserine (S)-3-methyl-2- 3-isopropylmalate dehydrogenase: acetyl-CoA IX92_RS01675 tyrA ser a [formate C acetyltransferase]- Arg [DNA] 5,6,7,8- + 4'-phosphopantetheine IX92_RS17670 2-oxobutanoate kinase/homoserine dehydratase: IX92_RS03635 IX92_RS00105 5'-deoxyadenosine a tRNA L-arginiyl-L- deoxyribonucleoside NADP 3',5'-ADP 2-iminosuccinate succinate oxopentanoate 3-phosphooxypyruvate prephenate IX92_RS11965 serine O-acetyltransferase: a flavodoxin semiquinone glycin -2-yl radical met tetrahydrofolate dehydrogenase II: metL IX92_RS01610 [+ 2 isozymes] N-end rule pathway I (prokaryotic) glutamyl-[protein] 5'-monophosphate histidinol- acetolactate homoserine kinase: branched-chain- L-glutamate-5- IX92_RS15025 glyoxylate cycle 3-oxodecanoyl-CoA IX92_RS01615 3-phosphoserine phosphate synthase AlsS: L-homoserine IX92_RS01915 amino-acid bifunctional L-aspartate 4- semialdehyde leucyl/ Amino Acid Degradation (2R,3S)-3- SAH aminotransferase: serine acetyltransferase: transaminase: IX92_RS27325 transaminase: chorismate mutase/ semialdehyde acetyl-CoA C- a [protein]- IX92_RS23065 succinate acetyl-CoA phenylalanyl- UDP-N-acetyl-α-D-glucosamine undecaprenyl-diphospho-N-acetylmuramoyl-L- 5-amino-4- (R)-1- a 1-acyl-sn-glycero- uridine 2605 a guanine 745 a secondary a (1->4)- IX92_RS09525 isopropylmalate IX92_RS05080 prephenate acyltransferase γ PRPP [DNA] adenosylcobyrate NADP + coenzyme A N-ethylmaleimide a uridine in tRNA butan-1-ol α γ-carotene [+ 2 isozymes] O-phospho-L-homoserine IX92_RS15875 bifunctional O-acetyl-L-serine tRNA--protein L-valine degradation I alanyl- -D-glutamyl-L-lysyl- D-alanyl-D-alanine imidazolecarboxyamide aminopropan-2-ol 3-phosphocholine in 23S rRNA in 23S rRNA L-ornithine N-phospho- alcohol -D-glucan homoserine O- 3-isopropylmalate 5'-methylthioadenosine/ dehydrogenase: FadA: L-isoleucine degradation I L-tyrosine degradation I L-threonine degradation I L-proline degradation L-arginine degradation L-glutamine dGMP 1,4-alpha-glucan L-histidinol (S)-2-aceto-2- O-phospho- aspartate kinase/ transferase: 23S rRNA 23S rRNA alkene reductase: tRNA L-histidine NADH-dependent NADH-dependent carotenoid succinyltransferase: dehydrogenase: S-adenosylhomocysteine tyrA a [protein] IX92_RS00100 II (AST pathway) degradation II undecaprenyldiphospho- arginine N- phosphohistidine branching phosphate hydroxybutanoate ile L-serine homoserine (S)-1-pyrroline- O-acetylhomoserine isocitrate lyase: glyoxylate IX92_RS10135 pseudouridine(2605) (guanine(745)-N(1)) IX92_RS09220 dihydrouridine alcohol alcohol 1,2-hydratase: cystathionine gamma- nucleosidase: 3-(4- an N-terminal N-terminal L- [+ 2 isozymes] muramoylpentapeptide beta-N- adenine adenosylcobinamide- CoA-disulfide succinyltransferase: phosphatase SixA: IX92_RS06480 IX92_RS01620 dehydrogenase 5-carboxylate aminocarboxypropyltransferase/ val exodeoxyribonuclease lysophospholipase: 5'-deoxynucleotidase: synthase RluB: -methyltransferase: alkene reductase: synthase DusB: dehydrogenase: dehydrogenase: protein GlgB: bifunctional ketol-acid synthase: IX92_RS15115 IX92_RS01940 phosphoserine IX92_RS02545 malate synthase: arginyl-[protein] ile tyr thr pro phosphoribosyltransferase: phosphate synthase: reductase: IX92_RS08290 cys (2S)-2-isopropyl- hydroxyphenyl) cysteine synthase: IX92_RS02840 leucyl-L-arginine gln acetylglucosaminyltransferase: IX92_RS04395 IX92_RS14775 IX92_RS03730 IX92_RS16685 reductoisomerase: I: IX92_RS01910 arg III: IX92_RS09685 IX92_RS00775 IX92_RS05360 1 IX92_RS10210 IX92_RS09770 IX92_RS14955 IX92_RS20665 IX92_RS20665 histidinol- phosphatase: pyrroline-5- isocitrate lyase/ IX92_RS22450 octanoyl-CoA threonine IX92_RS03900 IX92_RS01935 IX92_RS19755 2605 an N - 2 1'-hydroxy- 3-oxosuccinate S-ribosyl-L- pyruvate branched-chain- bifunctional glutamate IX92_RS12300 a pseudouridine N -succinyl- a 5,6-dihydrouridine a [protein]- IX92_RS00400 [+ 2 isozymes] arginine N- 745 N-ethylsuccinimide a ketone 1-butanal a glycogen γ-carotene phosphatase/ O-succinyl-L-homoserine L-cystathionine IX92_RS12160 aspartate/ bifunctional carboxylate phosphoenolpyruvate [+ 2 isozymes] branched-chain- aspartate/ ammonia-lyase, proline in 23S rRNA methylguanine L-ornithine in tRNA L-histidine homocysteine leucyl/ acyl-CoA amino-acid succinyltransferase: synthase: gltD 2'-deoxyguanosine imidazoleglycerol- (R)-2,3-dihydroxy- tyrosine/aromatic aspartate kinase/ reductase: mutase family protein: amino-acid tyrosine/aromatic biosynthetic: dehydrogenase/L- IX92_RS12490 a 2'- sn-glycero-3- in 23S rRNA ser cys phenylalanyl- dehydrogenase: transaminase: IX92_RS14775 ditrans,octacis-undecaprenyldiphospho-N- UDP phosphate 3-methylpentanoate L-serine biosynthesis I S-ribosylhomocysteine aminotransferase: homoserine IX92_RS13315 IX92_RS28335 transaminase: aminotransferase: IX92_RS15885 N 2 -succinyl- AICAR deoxyribonucleoside [DNA] adenosylcobinamide CoA-disulfide NADPH H + a carboxylate tRNA--protein IX92_RS15875 (2Z)-2-aminobut- glutamate gamma- glu acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L- phosphocholine cystathionine beta- dehydrogenase IX92_RS21210 IX92_RS15875 IX92_RS19790 L-leucine degradation I L-arginine 5'-monophosphate dehydratase HisB: dihydroxy-acid cystathionine gamma- 4-methyl-2- lyase: IX92_RS01375 serine IX92_RS19790 S-adenosyl-L-methionine cycle II 2-enoate semialdehyde alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine lyase: IX92_RS09395 3-phospho- II: metL pro transferase: [+ 3 isozymes] 3-methyl-2- IX92_RS09520 dehydratase: synthase: IX92_RS15115 oxopentanoate hydroxymethyltransferase: glyA aspartate/ a [protein] (S)-3-methyl-2- aspartate/ dehydrogenase (R)-glycerate an N-terminal IX92_RS10135 oxobutanoate IX92_RS15880 3-phosphoglycerate branched-chain- L-homocysteine tyrosine/aromatic D-threo-isocitrate (S)-malate N-terminal L- (2E)-oct-2-enoyl-CoA oxopentanoate tyrosine/aromatic leu PutA: histidinol serine L-homoserine met L-lysyl-[protein] N-acetyl-β- 1939 (2Z,4E)-2- a (1->4)- (S)-3-methyl-2- 2-aminoprop-2-enoate dehydrogenase: amino-acid aminotransferase: leucyl-L-lysine aminotransferase: IX92_RS23785 O-acetyl-L- D-glucopyranose maltopentaose S-(2-hydroxyacyl) a 2-acyl-sn-glycero- 3-heptaprenyl-4- long chain a uracil (S)-2- L-cystathionine L-homocysteine hydroxymethyltransferase: glyA methionine branched-chain- (S)-1-pyrroline- N 2 -succinyl- methanethiol glycyl-glycine glutathione an aryl sulfate a phenol neuraminate CTP an acyl phosphate hydroxyhexa- propan-1-ol an aldehyde α-D-glucan AIRs oxopentanoate IX92_RS22390 transaminase: IX92_RS05460 bifunctional fatty acid IX92_RS05460 homoserine glutathione 3-phosphocholine hydroxybenzoate polyphosphate in 23S rRNA hydroxyglutarate histidinol homoserine adenosyltransferase: Metabolic Regulator Biosynthesis 2-iminobutanoate amino-acid 5-carboxylate L-ornithine 4-hydroxy-3- exopolyphosphatase: 23S rRNA L-2- 2,4-dienedioate NADH-dependent aldehyde 1,4-alpha-glucan aconitate oxidation aminoimidazole dehydrogenase: branched-chain- 5-methyltetrahydropteroyltriglutamate- phosphoglycerate IX92_RS15875 gly kinase: 5-methyltetrahydropteroyltriglutamate- IX92_RS13260 NAD-dependent 3-(4-hydroxyphenyl) transaminase: polyprenylbenzoate (uracil(1939)-C(5)) acylphosphatase: hydroxyglutarate 4-oxalocrotonate alcohol dehydrogenase branching complex subunit isobutanoyl-CoA 2-methylbutanoyl- succinylornithine 4-alpha- acetylneuraminate IX92_RS02625 riboside kinase: amino-acid cystathionine beta- dehydrogenase: tyr hydratase 2/2- pyruvate L-histidine degradation I gamma- aryl-sulfate tautomerase: protein GlgB: IX92_RS08770 - homocysteine S- IX92_RS01915 - homocysteine S- malic enzyme: CoA 4-methyl-2-IX92_RS15875 transaminase: O-acetylhomoserine glucanotransferase: hydroxyacylglutathione lysophospholipase: decarboxylase: exopolyphosphatase: -methyltransferase IX92_RS06740 oxidase: dehydrogenase: (NADP(+)): IX92_RS09080 leu L-cystathionine ppGpp metabolism methylisocitrate alpha FadJ: glutamyltransferase: sulfotransferase: cytidylyltransferase: IX92_RS28515 histidinol transaminase: lyase: IX92_RS09395 methyltransferase: IX92_RS05115 IX92_RS01675 methyltransferase: IX92_RS05115 glycine betaine IX92_RS05440 isobutyryl- 4-hydroxyphenylpyruvate IX92_RS14780 aminocarboxypropyltransferase/ hydrolase: IX92_RS11790 IX92_RS00775 IX92_RS00630 RlmD: rumA IX92_RS18725 IX92_RS20665 IX92_RS23570 IX92_RS16685 2-iminopropanoate O-phospho- IX92_RS03870 S-2-methylbutryl- oxopentanoate IX92_RS16680 IX92_RS08875 IX92_RS21530 1939 IX92_RS15875 3-phosphooxypyruvate dehydratase: 2 IX92_RS00570 IX92_RS10230 a 5-methyluracil (3E)-2-oxohex- dehydrogenase: [+ 2 isozymes] [+ 2 isozymes] biosynthesis I (Gram- CoA:FAD dioxygenase: L-glutamate-5- N -succinyl- his cysteine synthase: IX92_RS02840 long chain a carboxylate 2-oxoglutarate a carboxylate starch AIR L-homoserine IX92_RS12785 CoA:FAD 2-oxobutanoate 2-heptaprenylphenol 1-propanal cystathionine pppGpp negative bacteria) [+ 2 isozymes] oxidoreductase: IX92_RS06120 semialdehyde L-glutamate 5- polyphosphate in 23S rRNA 3-enedioate IX92_RS09530 2-aminoprop-2-enoate 3-phosphoserine alanine oxidoreductase: histidine CMP-N-acetyl- ile L-homocysteine met gamma- threonine (S)-3- γ a 2-hydroxy sn-glycero-3- racemization glycine L-homocysteine SAM choline oxaloacetate IX92_RS21210 1-pyrroline-5- semialdehyde ammonia-lyase: maltose maltotetraose -L-glutamyl- glutathione a carboxylate β histidinal aminotransferase: synthase: synthase: cis-aconitate IX92_RS21210 homogentisate acetate L-cysteinylglycine an aryl sulfate a phenol carboxylate phosphocholine -neuraminate biosynthesis IV L-ornithine degradation L-glutamate GTP choline hydroxyoctanoyl-CoA succinylglutamate- met glycylglycine IX92_RS05080 IX92_RS01920 methylacrylyl-CoA (E)-2- isovaleryl-CoA carboxylate IX92_RS06180 5-methyltetrahydropteroyltriglutamate- IX92_RS15115 I (L-proline biosynthesis) guanosine-3',5'- guanosine-5'- bifunctional histidinol methionine synthase: pyruvate ala biosynthesis III diphosphokinase: dehydrogenase: fatty acid methylcrotonoyl- homogentisate dehydrogenase: semialdehyde urocanate - homocysteine S- O-phospho- bis(diphosphate) triphosphate,3'- aconitate oxidation dehydrogenase: dehydrogenase: IX92_RS01020 alanine racemase: cys thr thr IX92_RS01805 IX92_RS19270 enoyl-CoA CoA 1,2-dioxygenase: propanoyl-CoA isovaleryl-CoA IX92_RS23780 methyltransferase: IX92_RS05115 2-iminopropanoate L-serine 2-oxoglutarate 3'-diphosphatase: diphosphate hydratase 2/2- urocanate IX92_RS08770 IX92_RS07085 low-specificity L-ornithine betaine aldehyde complex subunit hydratase: enoyl-CoA IX92_RS06125 dehydrogenase: IX92_RS14770 an N 10 - D-cellobiose 1518 1407 a double 38- a (1->4)- a glucosylated [+ 2 isozymes] bifunctional hydratase: D-glucopyranose maltohexaose a lyso- p-nitrophenyl-β-D-galactoside adenine / a cytosine a 4-hydroxy-3- a uridine + L-threonine ornithine glutamate IX92_RS15500 diphosphatase: methylisocitrate alpha FadJ: phosphate IX92_RS21230 2 chlorobactene chloroacetaldehyde α choline an aryl sulfate NAD phosphoserine IX92_RS21205 hydratase: N - formyltetrahydrofolate phe 6'-phosphate 1519 polyprenylbenzoate stranded DNA 40 in tRNA -D-glucan glycogenin histidinol alanine racemase: betaine aldehyde 4-maleyl-acetoacetate proline IX92_RS06185 phospholipid adenine in 16S rRNA in 16S rRNA phosphatase: aldolase: cyclodeaminase: synthase: gltD S-adenosylhomocysteine IX92_RS00605 dehydratase: citrate synthase: IX92_RS03870 IX92_RS21205 propionyltransferase: 3-methylcrotonyl- succinylglutamate 16S rRNA 16S rRNA 4-hydroxy-3- DNA/RNA tRNA aldehyde 1,4-alpha-glucan 1,4-alpha-glucan dehydrogenase: met IX92_RS13690 dehydrogenase: [+ 2 isozymes] dehydrogenase/L- carotenoid NAD(+) IX92_RS12160 IX92_RS21495 IX92_RS23550 IX92_RS12490 hydrolase: IX92_RS20525 IX92_RS12785 IX92_RS03195 IX92_RS04780 4-imidazolone- (adenine(1518)-N(6)/ (cytosine(1407)-C(5) polyprenylbenzoate nuclease SfsA: pseudouridine(38- dehydrogenase branching branching choline kinase: sulfatase: IX92_RS09530 D-ala acetyl-CoA fatty acid (S)-3-hydroxy- [+ 2 isozymes] maleylacetoacetate CoA succinylglutamate 4-alpha- 1,2-hydratase: kinase: IX92_RS19270 glutamate gamma- 5-propanoate 6-phospho-beta- beta- IX92_RS12805 protein GlgB: protein GlgB: IX92_RS17435 IX92_RS23430 gly pro glu SAH GTP ppGpp oxidation isobutanoyl-CoA (2S,3S)-3- isomerase: propanoyl methylcrotonoyl- desuccinylase: phenylalanine 4- glucanotransferase: lysophospholipase: adenine(1519)-N(6))- )-methyltransferase decarboxylase: 40) synthase TruA: IX92_RS08290 (NADP(+)): ppnK pyruvate ser semialdehyde glucosidase: galactosidase: lacZ IX92_RS16685 IX92_RS16685 citrate complex subunit hydroxy-2- phosphate CoA carboxylase: IX92_RS06330 imidazolonepropionase: monooxygenase: IX92_RS00775 dimethyltransferase RsmF: IX92_RS00630 [+ 3 isozymes] IX92_RS03645 IX92_RS23570 glycine betaine IX92_RS06135 dehydrogenase IX92_RS16680 IX92_RS24530 38- + his methylbutanoyl- IX92_RS21755 a 2-(all-trans- a pseudouridine 1-hydroxychlorobactene phosphocholine a phenol NADP alpha FadB: IX92_RS21235 IX92_RS06195 6 RsmA: IX92_RS131101518 IX92_RS06810 a 5'-phosphooligonucleotide 2-chloroacetate a GlgE-glycogen a glycogen acetate kinase: PutA: N -dimethyladenine 1407 40 in tRNA nucleoside- CoA 4-fumaryl-acetoacetate glu a 5-methylcytosine polyprenyl)phenol IX92_RS00105 IX92_RS04785 3-methylglutaconyl- IX92_RS23785 /N 6 -dimethyladenine 1519 diphosphate GTP N-formimino- 4a-hydroxy-N 10 - maltopentaose maltose D-glucopyranose D-galactopyranose 4-nitrophenol in 16S rRNA (S)-3-hydroxy- CoA a carboxylate a glycerophosphodiester D-glucopyranose in 16S rRNA kinase: diphosphokinase: guanosine-3',5'- 3-oxooctanoyl-CoA acetate kinase: L-glutamate formyltetrahydrofolate tyr 6-phosphate isobutanoate glu Aminoacyl-tRNA Charging tRNA charging IX92_RS02300 IX92_RS01805 bis(diphosphate) IX92_RS21395 L-tryptophan 3-hydroxyisobutyrate formimidoylglutamase: 3'-diphosphatase: acetyl-CoA C- 2-methylacetoacetyl- degradation II dehydrogenase: propanoate IX92_RS06190 IX92_RS15500 acyltransferase CoA (via pyruvate) Lys Phe IX92_RS21195 a long-linear 955/2504/ 516 a [protein]- lys a tRNA phe a tRNA acetoacetate fumarate HMG-CoA L-cysteine L-alanyl-γ-D-glutamyl-meso- 1-(oleoyl)-sn-glycero-3- α a (1->4)- uridine 3-nonaprenyl-4- a uridine a double a (1->4)- FadA: D-glucopyranose a maltodextrin pyrithiamine -D-glucopyranose α sucrose uroporphyrinogen-III 1-hydroxyneurosporene π (S)-ureidoglycolate 7,8-dihydropterin methylglyoxal Trp Thr degradation II -D-glucan α N -phospho- α-D-glucan trp a tRNA thr a tRNA GDP IX92_RS00100 (S)-methylmalonate- acetyl-CoA C- glu trp 2,6-diaminopimeloyl-D-alanine UDP-N-acetyl-α-D-muramate phosphoethanolamine -D-glucan 2580 in 23S rRNA hydroxybenzoate in 16S rRNA stranded DNA 23S rRNA 4-hydroxy-3- uroporphyrin-III 16S rRNA L-histidine semialdehyde acyltransferase hydroxymethylglutaryl- carotenoid ureidoglycolate type I DNA guanine glyoxalase: [+ 2 isozymes] cysteine pseudouridine(955/ polyprenylbenzoate methyltransferase: pseudouridine(516) phosphohistidine alpha-amlyase: Gly lysine-- phenylalanine- CoA lyase: cys 4-alpha- 4-alpha- 1,2-hydratase: lyase: topoisomerase: deaminase: IX92_RS08485 gly a tRNA FadI: L-serine degradation desulfhydrase: UDP-N-acetylmuramate:L- amylosucrase: phosphatase SixA: IX92_RS27920 elongator tRNA ligase: -tRNA ligase: IX92_RS21245 thiaminase II: lysophospholipase: 2504/2580) decarboxylase: IX92_RS00695 synthase RsuA: val Val Ala ala ile Ile his His gln Gln arg Arg ser ser asn Asn asp asp cys Cys met Met met leu Leu pro Pro tyr Tyr tryptophan-- threonine-- hexanoyl-CoA methylmalonate- IX92_RS03865 cysteine tnaA glucanotransferase: glucanotransferase: IX92_RS08290 IX92_RS16495 IX92_RS10115 IX92_RS16535 [+ 3 isozymes] a tRNA a tRNA a tRNA a tRNA a tRNA a tRNA a tRNA tRNA tRNA a tRNA Met initiator tRNA a tRNA a tRNA a tRNA L-threonine alanyl-gamma-D-glutamyl- IX92_RS18575 IX92_RS03730 a (1->4)- tRNA IX92_RS12570 tRNA ligase: tRNA ligase: IX92_RS21815 semialdehyde IX92_RS16680 IX92_RS24455 IX92_RS00775 IX92_RS16680 synthase RluC: IX92_RS00630 [+ 3 isozymes] IX92_RS08325 1,1'-dihydroxy- a negatively 7,8- [+ 2 isozymes] degradation II acetoacetate desulfhydrase: cysteine meso-diaminopimelate a 16S rRNA a [protein]- glyoxylate (R)-lactate α glu acyl-CoA IX92_RS04215 -D-glucan IX92_RS14120 IX92_RS17605 glu a tRNA dehydrogenase tnaA L-methionine degradation 2-nonaprenylphenol precorrin-2 516 neurosporene supercoiled DNA dihydrolumazine glycine-- elongation factor phenylalanine- (S)-3-amino-2- ser desulfhydrase: ligase: IX92_RS13605 a pseudouridine 955/ pseudouridine L-histidine dehydrogenase: (CoA acylating) a (1->4)- tRNA ligase: valine-- alanine-- isoleucine-- histidine-- glutamine-- arginine-- serine-- asparagine-- aspartate-- cysteine-- methionine- methionine- leucine-- proline-- P--(R)-beta- tyrosine-- tryptophan-- threonine-- -tRNA ligase: L-serine cysteine I (to L-homocysteine) tnaA 2-(2-methylpyridin- 4-amino-2-methyl-5- sn-glycero-3- a short 1,4- D-fructofuranose 2504/2580 in 23S rRNA IX92_RS21210 methylpropanoate acetyl-CoA propanoyl-CoA thr 2-aminoprop- a maltodextrin maltose oleate α-D-glucan IX92_RS15920 tRNA ligase: tRNA ligase: tRNA ligase: tRNA ligase: tRNA ligase: tRNA ligase: tRNA ligase: tRNA ligase: tRNA ligase: tRNA ligase: -tRNA -tRNA tRNA ligase: tRNA ligase: lysine ligase: tRNA ligase: tRNA ligase: tRNA ligase: IX92_RS09175 : IX92_RS09010 desulfhydrase: pyrimidinemethanol phosphoethanolamine α-D-glucan [+ 3 isozymes] L-threonine ammonia-lyase: 2-enoate UDP-N-acetylmuramoyl-L-alanyl-γ-D- 3-yl)ethanol IX92_RS15925 IX92_RS01235 IX92_RS01280 IX92_RS02055 IX92_RS02755 IX92_RS03145 IX92_RS03715 IX92_RS04135 IX92_RS05485 IX92_RS09995 IX92_RS10155 ligase: metG ligase: metG IX92_RS11580 IX92_RS11750 IX92_RS15045 IX92_RS12660 IX92_RS21375 IX92_RS18705 IX92_RS09180 methylmalonate- dehydrogenase: IX92_RS05510 2-aminoprop-tnaA met glutamyl-meso-2,6-diaminopimeloyl-D-alanine D-serine degradation L-glutamine trans-hex-2-enoyl-CoA semialdehyde IX92_RS21660 2-enoate methionine an L-methionyl- L-serine an L-valyl- an L-alanyl- an L-isoleucyl- an L-histidyl- an L-glutaminyl- an L-arginyl- an L-seryl- an L-asparaginyl- an L-aspartyl- an L-cysteinyl- an L-methionyl- an L-leucyl- an L-prolyl- an L-lysyl- an L-tyrosyl- an L-tryptophanyl- an L-threonyl- an L-phenylalanyl- an L-glutamyl- dehydrogenase degradation I adenosyltransferase: Gly L-threonine 3- ammonia-lyase: an (S-diacyl-sn- a plant soluble XLLG xyloglucan an N-terminal L- RNase E a glycyl-[tRNA ] Val Ala Ile His Gln Arg ser Asn asp Cys [elongator Met Leu Pro Lys Tyr Trp Thr Phe Glu fatty acid an L-1- a 1-acyl-2-lyso- 3-decaprenyl-4- 2-keto-D- uridine [tRNA ] [tRNA ] [tRNA ] [tRNA ] [tRNA ] [tRNA ] [tRNA ] [tRNA ] [tRNA ] [tRNA ] [initiator tRNA ] [tRNA ] [tRNA ] [tRNA ] [tRNA ] [tRNA ] [tRNA ] [tRNA ] [tRNA ] (CoA acylating) IX92_RS21550 IX92_RS13260 D-glucopyranose a 1,4-β-D-glucan 1-aminocyclopropane- 2,3- 1-hydroxyneurosporene hydroxypyruvate an aliphatic amine ethanol (R)-lactate Met L-aspartate dehydrogenase: 2-aminoprop- D-serine 2-iminopropanoate glyceryl)-L-cysteinyl- heteroglycan oligosaccharide alanyl-[S5 protein degradation tRNA ] oxidation : IX92_RS21215 gln SAM phosphatidylethanolamine phosphatidylethanolamine hydroxybenzoate diaminopropanoate gluconate degradation I IX92_RS21860 [apolipoprotein] 1-carboxylate of 30S ribosome] 4-hydroxy-3- 2,5- substrate mRNA complex subunit 2-enoate D-serine 1-aminocyclopropane- 30S ribosomal carotenoid hydroxypyruvate copper amine catalase/ D-2-hydroxyacid uridine kinase: L-2-amino-3- asparagine diaminopropionate didehydrogluconate ammonia-lyase: 2-iminopropanoate 4-alpha- beta- 1,4-beta-D-glucan 1-carboxylate protein S5 alanine polyprenylbenzoate 1,2-hydratase: ribonuclease E: isomerase: oxidase: peroxidase HPI: dehydrogenase: IX92_RS10495 alpha FadJ: oxobutanoate synthase ammonia-lyase: hydrogencarbonate IX92_RS20760 apolipoprotein N- lysophospholipase: decarboxylase: reductase DkgB: IX92_RS04210 IX92_RS03870 asp 2-aminoprop- B: asnB glucanotransferase: galactosidase: glucohydrolase: deaminase: N-acetyltransferase: IX92_RS08290 IX92_RS16180 IX92_RS11400 IX92_RS18425 IX92_RS15005 glycine C- acyltransferase: IX92_RS00775 IX92_RS00630 IX92_RS20945 IX92_RS24480 UMP [+ 2 isozymes] aspartate/ 2-enoate IX92_RS16680 lacZ IX92_RS27995 IX92_RS09735 an N-terminal N-acetyl-IX92_RS05565 all-trans tartronate acetyltransferase: [+ 6 isozymes] pyruvate IX92_RS11570 2,5-didehydro- an aldehyde acetaldehyde pyruvate tyrosine/aromatic 2-iminopropanoate L-alanyl-[S5 protein 2-decaprenylphenol pyruvate neurosporene an mRNA fragment semialdehyde (S)-3- IX92_RS21865 glu SAH 2-oxobutanoate D-gluconate of 30S ribosome] aminotransferase: an N-acyl-(S-diacyl- a plant soluble sn-glycero-3- XXXG xyloglucan hydroxyhexanoyl-CoA pyruvate a 2-acyl-1-lyso- maltose a carboxylate D-galactopyranose a 1,4-β-D-glucan D-glucopyranose IX92_RS05460 gly heteroglycan oligosaccharide fatty acid L-phenylalanine S-adenosylhomocysteine phosphatidylethanolamine sn-glyceryl)-L- phosphoethanolamine 2-iminopropanoate L-asparagine oxidation degradation aspartate/ hydrolase: IX92_RS20525 cysteinyl-[lipoprotein] degradation I complex subunit I (aerobic) tyrosine/aromatic pyruvate L-glutamate aminotransferase: alpha FadJ: L-homocysteine degradation I XLXG xyloglucan an [amino group carrier protein]- a 2'- 34 a [protein]- phe 3-methyl-2- 5,10-methylene- a 2-acyl-1-lyso- 2552 a cytidine in an N-hydroxy- a double-stranded 7,8-dihydro- IX92_RS03870 IX92_RS19790 asn D-glucopyranose maltotetraose γ uridine in 23S rRNA rhodopin τ (R)-glycerate rhodopin MeOH tetrahydromethanopterin phosphatidylethanolamine oligosaccharide C-terminal- -(L-glutamate 5- deoxyribonucleoside met oligonucleotide N -phospho- 8-oxoguanine phenylalanine 4- oxaloacetate L-alanine oxobutanoate [elongator tRNA ] arylamine fatty acid pyruvate L-asparaginase glu semialdehyde-2-yl)-L-glutamateN-acetyl-gamma- 23S rRNA 5'-monophosphate tRNA(Met) cytidine N-hydroxyarylamine carotenoid L-histidine glycerate carotenoid catalase/ 8-oxoguanine monooxygenase: degradation IV oligoribonuclease: phosphohistidine oxidation 1: IX92_RS04145 NAD-glutamate 4-alpha- beta- glutamyl-phosphate (uridine(2552)-2'-O) 5'-deoxynucleotidase: acetyltransferase: O-acetyltransferase: 1,2-hydratase: dehydrogenase: 1,2-hydratase: peroxidase HPI: deaminase: IX92_RS21755 3-methyl-2-oxobutanoate IX92_RS13885 phosphatase SixA: glucanotransferase: lysophospholipase: -methyltransferase IX92_RS08290 IX92_RS18425 complex subunit tyr asp dehydrogenase: hydroxymethyltransferase: galactosidase: reductase: IX92_RS04395 IX92_RS24720 IX92_RS18140 IX92_RS08290 IX92_RS03730 IX92_RS01215 IX92_RS16460 ala IX92_RS00775 RlmE: IX92_RS12630 4 34 alpha FadB: IX92_RS06860 IX92_RS12830 IX92_RS16680 lacZ an [amino group carrierIX92_RS14220 protein]- 2552 an N -acetylcytidine an N- a nucleoside 5'- 1,1'-dihydroxy-1,1',2,2'- alanine a 2'-O-methyluridine a 2'- a [protein]- hydroxypyruvate all-trans-lycopene formaldehyde urate IX92_RS00105 2-oxoglutarate C-terminal-γ-(5-phospho- in [elongator tRNA met ] acetoxyarylamine monophosphate tetrahydrolycopene dehydrogenase: in 23S rRNA deoxyribonucleoside L-histidine sn-glycero-3- XXXG xyloglucan L-glutamyl)-L-glutamate 3-oxohexanoyl-CoA IX92_RS04795 maltose maltotriose a carboxylate D-galactopyranose pyruvate 2-dehydropantoate THMPT phosphoethanolamine oligosaccharide acetyl-CoA C- acetyltransferase: IX92_RS19705 core oligosaccharide-lipid an L-1- 2-amino-6-[1-hydroxyethyl]- XXLG xyloglucan a pseudouridine 1915 a 23S rRNA (2R,3S)-3- a β-D-galactoside a ribonucleoside an α-limit dextrin uroporphyrinogen-I oxaloacetate reduced riboflavin a folate wound RNA β-D-allopyranose DHAP [+ 4 isozymes] A (E. coli K-12 core type) phosphatidylethanolamine 7-methyl-7,8-dihydropterin oligosaccharide in 23S rRNA uridine 1911/1915/1917 3'-phosphate isopropylmalate 2-amino-4-hydroxy-6- 23S rRNA 23S rRNA 4-alpha- uroporphyrinogen 3-isopropylmalate dihydrofolate RNA helicase: D-ribose methylglyoxal butanoyl-CoA superpathway of sulfate assimilation Inorganic Nutrient Metabolism hydroxymethyldihydropteridine 2',3'-cyclic-nucleotide citrate synthase: flavin reductase: selenate reduction sulfoacetaldehyde degradation I 2-aminoethylphosphonate beta- (pseudouridine(1915)- pseudouridine(1911/ glucanotransferase: decarboxylase: dehydrogenase: reductase: IX92_RS04360 pyranase: synthase: and cysteine biosynthesis phosphoethanolamine diphosphokinase: IX92_RS10460 beta- 2'-phosphodiesterase: IX92_RS03195 IX92_RS18030 galactosidase: N(3))-methyltransferase 1915/1917) synthase IX92_RS16680 IX92_RS13935 IX92_RS01620 IX92_RS23375 [+ 6 isozymes] IX92_RS22320 IX92_RS20690 acyl-CoA degradation I transferase: galactosidase: lacZ IX92_RS14510 α 3-phospho- [+ 2 isozymes] 3 RlmH: IX92_RS11600 RluD: IX92_RS02195 a -limit dextrin [1-(2-amino-7-methyl-4-oxo- lacZ an N - 1911/ 1,2-dihydroxypropane- 4-methyl-2- β-D-allofuranose dehydrogenase: selenate sulfoacetaldehyde (2-aminoethyl) IX92_RS11355 a pseudouridine a ribonucleoside with short branches coproporphyrinogen I riboflavin a 7,8-dihydrofolate an unwound RNA methylglyoxal (R)-glycerate 7,8-dihydro-3H-pteridin- methylpseudouridine 1915 1,2,3-tricarboxylate oxopentanoate IX92_RS21210 sulfate phosphonate 1915/1917 in 23S rRNA sulfate 3-phosphoglycerate 2-aminoethylphosphonate- 6-yl)]ethyl diphosphate [+ 3 isozymes] adenylyltransferase: lipid A-core- D-galactopyranose a non galactosylated XXXG xyloglucan in 23S rRNA dehydrogenase: sulfoacetaldehyde -pyruvate transaminase: a 1,2-diacyl-sn-glycerol D-galactopyranose IX92_RS14495 phosphoethanolamine (hep I) galactose acceptor oligosaccharide crotonyl-CoA sulfate IX92_RS22390 acetyltransferase: IX92_RS21610 adenylyltransferase: IX92_RS14500 phosphoglycerate IX92_RS04545 phosphonoacetaldehyde fatty acid IX92_RS14495 sulfate an N 6 -L- dehydrogenase: UDP-N-acetyl-α-D-muramoyl- 2251 a 5' triphospho- dCMP D-ribulose oxidation IX92_RS14500 adenylyltransferase: phosphonoacetaldehyde D-alanyl-D-alanine 37 dihydrolipoamide maltotriose a glucan guanosine in 23S rRNA carboxynorspermidine 2-phosphoglycolate a thiopurine 4-nitrocatecholsulfate D-glucopyranose a chitodextrin 5-methylcytosine maleate IX92_RS01675 γ threonylcarbamoyladenine [mRNA] 5-phosphate IX92_RS23820 acetyl phosphate sulfite hydrolase: IX92_RS21620 L-alanyl- -D-glutamyl-L-lysine complex subunit sulfate adenosine 5'- in tRNA pyruvate 23S rRNA carboxynorspermidine RNA 5'-deoxynucleotidase: phosphoglycolate thiopurine S- sugar chitinase: cytosine maleate cis- tRNA cyclic N6- phosphoribulokinase: sulfatase: alpha FadJ: adenylyltransferase: 3-phosphooxypyruvate phosphoselenate dehydrogenase complex 4-alpha- (guanosine(2251)-2'- decarboxylase: pyrophosphohydrolase: IX92_RS04395 phosphatase: methyltransferase: dehydrogenase: IX92_RS04390 deaminase: trans isomerase: phosphate acetaldehyde UDP-N-acetylmuramoyl- threonylcarbamoyladenosine(37) IX92_RS14755 IX92_RS23430 IX92_RS03870 IX92_RS23820 dihydrolipoyllysine-residue glucanotransferase: O)-methyltransferase IX92_RS08255 IX92_RS01995 IX92_RS14125 IX92_RS06225 IX92_RS16060 [+ 4 isozymes] IX92_RS22095 IX92_RS17120 3-phosphoserine acetyltransferase: tripeptide--D-alanyl-D- synthase TcdA: IX92_RS02730 2'-deoxycytidine [+ 2 isozymes] a cyclic N 6 -L- acetyltransferase: aceF IX92_RS16680 RlmB: IX92_RS14685 a 5'-phospho- D-ribulose-1,5- a thiopurine D-glucono- N,N'- thymine APS aminotransferase: IX92_RS04525 alanine ligase: murF 2-O-methylguanosine 2251 norspermidine glycolate 4-nitrocatechol diacetylchitobiose fumarate (S)-3- assimilatory nitrate reduction threonylcarbamoyladenosine S-acetyldihydrolipoamide [mRNA] bisphosphate S-methylether 1,5-lactone IX92_RS05080 phosphate in 23S rRNA hydroxybutanoyl-CoA adenylyl- selenite sulfate reduction III IV (dissimilatory) 37 in tRNA acetyltransferase: UDP-N-acetyl-α-D-muramoyl-L-alanyl- fatty acid sulfate kinase: O-phospho- acetyl-CoA a glucan D-glucopyranose IX92_RS04780 γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine oxidation IX92_RS14485 L-serine sulfate nitrate phosphoserine sulfate periplasmic complex subunit PAPS acetyl-CoA urea cycle thiosulfate 2,5-diamino-6-(5- 10 β dUMP alpha FadJ: phosphatase: adenylyltransferase: nitrate reductase phosphatidylglycerolphosphate 4a-hydroxy-N - a double 3-phenyl-2- a single -D-glucopyranose 3'-cmp 3'-UMP dTMP starch disproportionation phospho-D-ribitylamino) an adenine in DNA D-glucopyranose 5-fluorocytosine ferroheme o IX92_RS03870 phosphoadenylyl- IX92_RS12160 selenodiglutathione IX92_RS14495 subunit alpha: (1-oleoyl, 2-palmitoyl) formyltetrahydrofolate stranded DNA oxopropanoate stranded DNA 1-phosphate IV (rhodanese) pyrimidin-4(3H)-one exodeoxyribonuclease 5'-deoxynucleotidase: 2',3'-cyclic-nucleotide 2',3'-cyclic-nucleotide 5'-deoxynucleotidase: sulfate reductase: IX92_RS14500 IX92_RS20005 bifunctional 4-hydroxyphenylpyruvate beta- DNA adenine sugar cytosine heme A fatty acid arg 4a-hydroxytetrahydrobiopterin deoxyribonuclease 2'-phosphodiesterase: 2'-phosphodiesterase: IX92_RS04395 alpha-amlyase: ser sulfate nitrite thiosulfate diaminohydroxyphosphoribosylaminopyrimidine phosphatidylglycerophosphatase V: IX92_RS02695 dioxygenase: phosphoglucomutase: IX92_RS04395 methylase: dehydrogenase: deaminase: synthase: oxidation IX92_RS14310 dehydratase: IX92_RS21750 IV: IX92_RS12230 IX92_RS14510 IX92_RS14510 IX92_RS27920 adenylyltransferase: deaminase/5-amino-6-(5-phosphoribosylamino) A: IX92_RS11925 IX92_RS02700 IX92_RS06120 IX92_RS18555 IX92_RS14135 IX92_RS16060 IX92_RS22095 IX92_RS23165 complex subunit 2'-deoxyuridine thymidine ammonia-forming 10 IX92_RS02705 β cytidine uridine 6 a large- sulfite serine O- IX92_RS23820 uracil reductase RibD: IX92_RS11955 1-oleoyl-2-palmitoyl- an N -formyl- (2-hydroxyphenyl) -D-glucose an N -methyladenine D-glucono- 5-fluorouracil alpha FadB: glutathioselenol argininosuccinate nitrite reductase rhodanese domain- 5-amino-6-(5-phospho- a 5'-phosphooligonucleotide branched glucan ferroheme a acetyltransferase: APS phosphatidylglycerol 7,8-dihydrofolate a 5'-phosphooligonucleotide acetate 6-phosphate in DNA 1,5-lactone IX92_RS00105 assimilatory lyase: ammonium cytochrome c552: containing protein: D-ribitylamino)uracil IX92_RS15025 IX92_RS14205 sulfite reductase phosphoadenylyl- IX92_RS03395 IX92_RS18375 acetoacetyl-CoA serine carbamoyl- (NADPH): sulfate reductase: IX92_RS03410 thiosulfate acetyltransferase: L-arginino- phosphate acetyl-CoA C- IX92_RS14315 IX92_RS14310 L-ornithine sulfurtransferase IX92_RS23065 hydrogen selenide succinate synthase: carB ammonium acyltransferase IX92_RS14320 GlpE: IX92_RS00875 sulfite IX92_RS12255 FadI: O-acetyl-L-serine hydrogen sulfide carbamoyl IX92_RS03865 assimilatory sulfite thiocyanate sulfite ornithine phosphate [+ 4 isozymes] reductase (NADPH) argininosuccinate O-acetylhomoserine carbamoyltransferase: : IX92_RS14315 synthase: acetyl-CoA aminocarboxypropyltransferase/ IX92_RS01190 IX92_RS14320 IX92_RS14210 cysteine synthase: IX92_RS02840 L-citrulline [+ 2 isozymes] hydrogen sulfide

cys a branched- a reduced chain a reduced putrescine plastocyanin amino acid an plastocyanin a C4- D-fructose D-fructose gln (2-aminoethyl) spermidine a branched- molybdate glu oligopeptide an oxidized a carbohydrate a branched- a branched- dicarboxylate 1-phosphate 1-phosphate phosphonate 3,5- a basic putrescine putrescine putrescine a polar a polar an oxidized D-glucose 6- D-glucose 6- D-glucose 6- D-trehalose D-trehalose a C4- a C4- lactose 6'- lactose 6'- an inorganic an inorganic glycine betaine glycine betaine a sugar 6- an a siderophore a polyamine a nucleotide enterobactin D-methionine 3-phenylpropanoate plastocyanin a lipopolysaccharide a lipopolysaccharide chain chain chain molybdate molybdate a nucleoside a nucleoside a nucleoside O-acetyl-L-serine pro asp ammonium a tricarboxylate a tricarboxylate a tricarboxylate glutamate a microcin a phospholipid a dipeptide homoserine amino acid spermidine amino acid amino acid plastocyanin phosphate phosphate a carbohydrate a carbohydrate dicarboxylate phosphate phosphate anion anion pro gly phosphate dimethoxytoluene spermidine spermidine phosphate 6-phosphate 6-phosphate amino acid predicted amino acid amino acid dicarboxylate L-ornithine ammonium ammonium ammonium oligopeptide lactone a polysaccharide a polysaccharide a lipopolysaccharide cys predicted ABC predicted predicted ABC predicted predicted predicted predicted ABC ABC predicted ABC predicted ABC predicted ABC transporter ABC cytochrome transporter ABC PEP-driven PEP-driven transporter of RS19430 RS23540 RS02985 RS00780 RS19470 RS22000 RS11715 RS17505 RS14915 transporter RS02170 RS23555 RS24390 RS23075 RS22570 RS23970 RS05005 RS07500 efflux transporter of efflux transporter of RS01060 RS11540 RS17010 RS04290 transporter of RS24565 RS18545 RS11695 RS09120 RS12580 of a RS07575 RS07580 RS23100 RS20030 RS16995 RS20705 RS06375 RS20595 RS12850 RS04205 RS10260 RS21830 RS12195 RS21385 RS17170 RS23775 RS05005 RS22345 RS17105 RS17110 RS24580 RS06520 RS06525 RS06530 RS04725 RS23720 RS19375 RS01085 RS08410 RS23605 RS23590 transporter c oxidase of a C4- transporter transporter transporter (2-aminoethyl) of spermidine/ a lipopolysaccharide a lipopolysaccharide a carbohydrate branched- of an dicarboxylate of molybdate of D-fructose of D-fructose phosphonate putrescine chain oligopeptide a branched- a branched- a branched- gln 3,5- a basic putrescine putrescine putrescine a polar a polar D-glucose D-glucose D-glucose a carbohydrate a carbohydrate trehalose trehalose amino acid a C4- a C4- lactose lactose an inorganic an inorganic glycine betaine glycine betaine a sugar an a siderophore a polyamine a nucleotide homoserine enterobactin D-methionine 3-phenylpropanoate chain chain chain molybdate molybdate a nucleoside a nucleoside a nucleoside pro glu ammonium a tricarboxylate a tricarboxylate a tricarboxylate glutamate a microcin a phospholipid a dipeptide dimethoxytoluene amino acid spermidine spermidine spermidine a polysaccharide a polysaccharide amino acid amino acid O a lipopolysaccharide a carbohydrate dicarboxylate dicarboxylate anion anion O-acetyl-L-serine pro ammonium ammonium ammonium gly oligopeptide lactone 2 O amino acid amino acid amino acid a C4- (2-aminoethyl) putrescine 2 a lipopolysaccharide a lipopolysaccharide molybdate D-fructose D-fructose cys asp an H O dicarboxylate phosphonate spermidine 2 H O a branched- L-ornithine oligopeptide 2 chain amino acid This diagram was automatically generated by SRI International Pathway Tools version 25.0, authors S. Paley and P.D. Karp.