SHW-DPW) Wheat Accessions
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RNA-Seq and Itraq Reveal the Dwarfing Mechanism of Dwarf
Int. J. Biol. Sci. 2016, Vol. 12 653 Ivyspring International Publisher International Journal of Biological Sciences 2016; 12(6): 653-666. doi: 10.7150/ijbs.14577 Research Paper RNA-Seq and iTRAQ Reveal the Dwarfing Mechanism of Dwarf Polish Wheat (Triticum polonicum L.) Yi Wang1*, Xue Xiao1*, Xiaolu Wang1*, Jian Zeng2, Houyang Kang1, Xing Fan1, Lina Sha1, Haiqin Zhang1, Yonghong Zhou1 1. Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China. 2. College of Resources, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China. *The authors contributed equally to this work. Corresponding author: Yonghong Zhou, Fax: +86 028 826 503 50, E-mail address: [email protected]. © Ivyspring International Publisher. Reproduction is permitted for personal, noncommercial use, provided that the article is in whole, unmodified, and properly cited. See http://ivyspring.com/terms for terms and conditions. Received: 2015.12.02; Accepted: 2016.02.15; Published: 2016.04.08 Abstract The dwarfing mechanism of Rht-dp in dwarf Polish wheat (DPW) is unknown. Each internode of DPW was significantly shorter than it in high Polish wheat (HPW), and the dwarfism was insensitive to photoperiod, abscisic acid (ABA), gibberellin (GA), cytokinin (CK), auxin and brassinolide (BR). To understand the mechanism, three sets of transcripts, DPW, HPW, and a chimeric set (a combination of DPW and HPW), were constructed using RNA sequencing (RNA-Seq). Based on the chimeric transcripts, 2,446 proteins were identified using isobaric tags for relative and absolute quantification (iTRAQ). A total of 108 unigenes and 12 proteins were considered as dwarfism-related differentially expressed genes (DEGs) and differentially expressed proteins (DEPs), respectively. -
John Percival
THE LINNEAN Wheat Taxonomy: the legacy of John Percival THE LINNEAN SOCIETY OF LONDON BURLINGTON HOUSE, PICCADILLY, LONDON WlJ OBF SPECIAL ISSUE No 3 2001 ACADEMIC PRESS LIMITED 32 Jam.estown Road London NWl 7BY Printed on acid free paper © 2001 The Linnean Society of London All rights reserved. No part of this book may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage or retrieval system without permission in writing from the publisher. The designations of geographic entities in this book, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of the publishers, the Linnean Society, the editors or any other participating organisations concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. The views expressed in this publication do not necessarily reflect those of The Society, the editors, or other participating organisations. Printed in Great Britain. Wheat Taxonomy: the legacy of John Percival Conference Participants (most of whom are identified by number on the key to the group photograph above). I. M. Ambrose,; 2. J. Bingham, UK; 3. R. Blatter, Switzerland; 4. A. Bomer, Germany; 5. A. Brandolini Italy; 6. R. Brigden, UK; 7. A. H. Bunting, UK; 8. P. Caligari, UK; 9. E.M.L.P. Clauss, USA; 10. P.O. Clauss, USA; 11 . K. Clavel, France; 12. P. Davis, UK; 13. J. Dvohik, USA; 14. !. Faberova, Czech Republic; 15 . A. A. Filatenko, Russia; 16. -
Article on Genetic Markers for Bunt Resistance From
Let’s make grain great again Click here to sign up for the newsletter The Landrace Newsletter no. 5 May 2021 A new growing season is ahead of us, and I greet the spring with news from both future and past from the organic grain sector. I wish you joyfull reading Anders Borgen Content in this newsletter Open field day and general assembly in Landsorten, Tuesday 22. June..............................................2 But now then, is it Landsorten or Agrologica, selling organic seed in future?...................................2 Mobile stone mill for local production................................................................................................3 Nordic grain festival 28th-30th October 2021 in Norway.....................................................................4 News from Agrologica science lab......................................................................................................4 Genetic markers for bunt resistance - news from LIVESEED-, Økosort-II and bunt projects......4 Acid rain and gluten-index..............................................................................................................4 Zanduri, Macha, and the hailstorm in Georgia...............................................................................6 Colchic emmer (Triticum paleochochicum)...............................................................................6 Emmer........................................................................................................................................7 Durum........................................................................................................................................7 -
Exploiting the Genetic Diversity of Wild Ancestors and Relatives of Wheat for Its Improvement Jagdeep Singh Sidhu South Dakota State University
South Dakota State University Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange Electronic Theses and Dissertations 2018 Exploiting the Genetic Diversity of Wild Ancestors and Relatives of Wheat for its Improvement Jagdeep Singh Sidhu South Dakota State University Follow this and additional works at: https://openprairie.sdstate.edu/etd Part of the Plant Breeding and Genetics Commons Recommended Citation Sidhu, Jagdeep Singh, "Exploiting the Genetic Diversity of Wild Ancestors and Relatives of Wheat for its Improvement" (2018). Electronic Theses and Dissertations. 2641. https://openprairie.sdstate.edu/etd/2641 This Thesis - Open Access is brought to you for free and open access by Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. For more information, please contact [email protected]. EXPLOITING THE GENETIC DIVERSITY OF WILD ANCESTORS AND RELATIVES OF WHEAT FOR ITS IMPROVEMENT BY JAGDEEP SINGH SIDHU A thesis submitted in partial fulfillment of the requirements for the Master of Science Major in Plant Science South Dakota State University 2018 iii This thesis is dedicated to my respected father Mr. Amrik Singh Sidhu, mother Mrs. Harjit Kaur, my dear sister Sukhdeep Kaur and cute niece Samreet. iv ACKNOWLEDGEMENTS First of all, I am grateful to Dr. Sunish Sehgal for giving me an opportunity work in his winter breeding program. My master’s work would not have been possible without his love, help, support and encouragement. I truly respect Dr. -
Comparative-Genetic Analysis – a Base for Wheat Taxonomy Revision
Czech J. Genet. Plant Breed., 41, 2005 (Special Issue) Comparative-Genetic Analysis – a Base for Wheat Taxonomy Revision N. P. G�������� Institute of Cytology and Genetics of Siberian Branch of Russian Acadeny of Sciences, Novosibirsk 630090, Russia, e-mail: [email protected] Abstract: Comparative-genetic analysis performed at the same time on cultivated wheat species and their wild relatives permits the definition of an introgressive hybridization strategy and reconstruction of the origin of the taxonomy important genes. The analysis also allows clarification of the origin of wheats and their differentiation into species, thereby proving a basis for a successful revision of Triticum L. genus system. Keywords: Triticum genus; comparative-genetic analysis; taxonomy The genus Triticum L. has a diphyletic origin (D��- Random amplified polymorphic DNA analysis ����� & K������� 1979). Its includes di- (2n = 14), was used to assess the phylogenetic relationships tetra- (2n = 28) and hexaploid (2n = 42) species, among these five morphological groups of hexa- with the phylogeny of most of them more or less ploid wheat. These results are in agreement with clarified (T�������� 1968). The main result of the those based on morphological classification (C�� wheat domestication process was the reconstruc- et al. 2000). As to di- and tetraploid wheat species, tion of rachis and glumes, which has converted no such genes controlling taxonomically important fragile spikes of the wild species into non-fragile, traits has been as yet identified and, accordingly naked grain cultivated species. These traits under- taxonomists usually use a species “radical’, in lie L������� (1753) classification of Triticum. His Vavilov’s terms, i.e. -
Evolutionary History of Triticum Petropavlovskyi Udacz. Et Migusch
Evolutionary History of Triticum petropavlovskyi Udacz. et Migusch. Inferred from the Sequences of the 3-Phosphoglycerate Kinase Gene Qian Chen1,2., Hou-Yang Kang1., Xing Fan1, Yi Wang1, Li-Na Sha1, Hai-Qin Zhang1, Mei-Yu Zhong1, Li-Li Xu1, Jian Zeng3, Rui-Wu Yang4, Li Zhang4, Chun-Bang Ding4, Yong-Hong Zhou1,2* 1 Triticeae Research Institute, Sichuan Agricultural University, Sichuan, People’s Republic of China, 2 Key Laboratory of Crop Genetic Resources and Improvement, Ministry of Education, Sichuan Agricultural University, Sichuan, People’s Republic of China, 3 College of Resources and Environment, Sichuan Agricultural University, Sichuan, People’s Republic of China, 4 College of Biology and Science, Sichuan Agricultural University, Sichuan, People’s Republic of China Abstract Single- and low-copy genes are less likely to be subject to concerted evolution. Thus, they are appropriate tools to study the origin and evolution of polyploidy plant taxa. The plastid 3-phosphoglycerate kinase gene (Pgk-1) sequences from 44 accessions of Triticum and Aegilops, representing diploid, tetraploid, and hexaploid wheats, were used to estimate the origin of Triticum petropavlovskyi. Our phylogenetic analysis was carried out on exon+intron, exon and intron sequences, using maximum likelihood, Bayesian inference and haplotype networking. We found the D genome sequences of Pgk-1 genes from T. petropavlovskyi are similar to the D genome orthologs in T. aestivum, while their relationship with Ae. tauschii is more distant. The A genome sequences of T. petropavlovskyi group with those of T. polonicum, but its Pgk-1 B genome sequences to some extent diverge from those of other species of Triticum. -
Increased and Ectopic Expression of Triticum Polonicum VRT-A2 Underlies Elongated Glumes and Grains in Hexaploid Wheat in a Dosage- Dependent Manner
bioRxiv preprint doi: https://doi.org/10.1101/2020.11.09.375154; this version posted November 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Increased and ectopic expression of Triticum polonicum VRT-A2 underlies elongated glumes and grains in hexaploid wheat in a dosage- dependent manner Nikolai M. Adamski1, James Simmonds1, Jemima F. Brinton1,3, Anna E. Backhaus1, Yi Chen1, Mark Smedley1, Sadiye Hayta1, Tobin Florio1, Pamela Crane1, Peter Scott1,4, Alice Pieri1, Olyvia Hall1,5, J. Elaine Barclay1, Myles Clayton2, John H. Doonan2, Candida Nibau2, Cristobal Uauy1 1 John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom 2 The National Plant Phenomics Centre, Institute of Biological, Rural and Environmental Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, SY23 3EE UK Present address: 3 Department of Natural Capital and Plant Health, Royal Botanic Gardens, Kew, Richmond, UK 4 Department of Crops & Soils, Scotland’s Rural College, Peter Wilson Building, King's Buildings, W Mains Rd, Edinburgh, EH9 3JG 5 School of Biological Sciences, University of Reading, Reading RG6 6AH, United Kingdom Corresponding author: [email protected] Short title: VRT-A2 encodes the wheat long glume P1 locus Keywords: wheat, expression, ectopic, SVP, MADS-box, dosage-dependent, glume, lemma, grain, intron 1 Email address: Nikolai M. Adamski [email protected] James Simmonds [email protected] Jemima F. Brinton [email protected] Anna E. -
Classification of Wheat Varieties Grown in the United States in 1949
■^"çfpp^ Classification of Wheat ^''^''^ LI 3 RAR' Varieties Grown in the United States in 1949 ^'^-.lifí!'. 'f3^'''^ , *,»;$.^"''' By B. B, BAYLES Principal Agronomist and J. ALLEN CLARK Senior Agronomist Field Crops Researeh Braneh Agricultural Research Service Technical Bulletin No. 1083 March 19S4 UNITED STATES DEPARTMENT OF AGRICULTURE, WASHINGTON, B.C. Technical Bulletin No. 1083 March 1954 Classification of Wheat Varieties Grown in the United States in 1949 By B. B. BAYLES Principal Agronomist and J. ALLEN CLARK Senior Agronomist Field Crops Research Branch Agricultural Research Service United States Department of Agriculture, Washington, D. C. For sale by the Superintendent of Documents, Washington 25, D. C. - Price 70 cents Technical Bulletin No. 1083 March 1954 Classification of Wheat Varieties Grown in the United States in 1949 ' By B. B. BAYLES, principal agronomist, and J. ALLEN CLARK, senior agronomist, Field Crops Research Branch, Agricultural Research Service CONTENTS Pa^e Page Need for classification 1 Classification of the genus Trit- Previous investigations 2 icum 35 Foreign classifications 2 Spelt.-_ 37 Domestic classifications 6 Emmer 37 Summary of previous classifica- Poulard wheat 37 tions 8 Polish wheat 40 Present investigations 9 Timopheevi 40 Classification nurseries 10 Einkorn 40 Description, history, and dis- Common wheat 40 tribution 12 Club wheat 146 Varietal nomenclature 13 Durum wheat 151 The wheat plant 14 Literature cited 158 Taxonomic characters 14 Index to varieties and synonyms.. 169 Other characters 34 NEED FOR CLASSIFICATION careful consideration by growers. The choice is partly dependent, The varieties of wheat grown in however, upon the determination the United States show a great of identity. -
Perspectives from Reticulate Evolution Abstract Introduction
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 21 April 2021 Wheat speciation and adaptation: perspectives from reticulate evolution Authors Xuebo Zhao1,2, Xiangdong Fu1,2, Changbin Yin1,*, Fei Lu1,2,3,* Affiliations 1State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China. 2University of Chinese Academy of Sciences, Beijing, China. 3CAS-JIC Centre of Excellence for Plant and Microbial Science (CEPAMS), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China. Correspondence [email protected] (F.L.); [email protected] (C.Y.) Abstract Reticulate evolution through the interchanging of genetic components across organisms can impact significantly on the fitness and adaptation of species. Bread wheat (Triticum aestivum subsp. aestivum) is one of the most important crops in the world. Allopolyploid speciation, frequent hybridization, extensive introgression, and occasional horizontal gene transfer (HGT) have been shaping a typical paradigm of reticulate evolution in bread wheat and its wild relatives, which is likely to have a substantial influence on phenotypic traits and environmental adaptability of bread wheat. In this review, we outlined the evolutionary history of bread wheat and its wild relatives with a highlight on the interspecific hybridization events, demonstrating the reticulate relationship between species/subspecies in the genera Triticum and Aegilops. Furthermore, we discussed the genetic mechanisms and evolutionary significance underlying the introgression of bread wheat and its wild relatives. An in-depth understanding of the evolutionary process of Triticum species should be beneficial to future genetic study and breeding of bread wheat. -
Five Continents
eCONTI by N.L Vavilov Finally published in English, this book contains descriptions by Academician NI. Vavilov ofthe expeditions he made between 1916 and 1940 to jive continents, in search ofnew agricultural plants and conjil1nation ofhis theories on plant genetic divmity. Vavilov is ironic, mischievolls, perceptive, hilariolls and above all scholarly. This book is a readable testament to his tenacity and beliefin his work, in the foee ofthe greatest adversity. 11 This book is dedicated fa the memory of Nicolay Ivanovich Vavilov (1887-1943) on the IIOth anniversary of his birth 11 N.!. Vavilov Research Institure of Plant Industry • International Plant Genetic Resources Institute United States Agency for International Development • American Association for the Advancement of Science United States Depanment ofAgriculture • Agricultural Research Service • National Agricultural Library • THIS BOOK IS DEDICATED TO THE MEMORY OF N/COLAY IVANOVICH VAVILOV (1887-1943) ON THE 11 Oth ANNIVERSARY OF HIS BIRTH • • FIVE CONTINENTS NICOLAY IVANOVICH VAVILOV Academy ofSciences, USSR Chemical Technological and Biological Sciences Editor-in-chief L.E. ROOIN Tramkzted ft-om the Russian by OORIS LOVE Edited by SEMYON REZNIK and PAUL STAPLETON 1997 • The International Plant Genetic Resources Institute (IPGRI) is an autonomous international scientific organization operating under the aegis of the Consultative Group on International Agricultural Research (CGIAR). The international status of IPGRI is conferred under an Establishment Agreement signed by the Governments ofAustralia, Belgium, Benin, Bolivia, Burkina Faso, Cameroon, Chile, China, Congo, COSta Rica, Cote d'Ivoire, Cyprus, Czech Republic, Denmark, Ecuador, Egypt, Greece, Guinea, Hungary, India, Indonesia, Iran, Israel, Italy, Jordan, Kenya, Malaysia, Mauritania. Morocco, Pa!cisran, Panama, Peru, Poland, Porrugal, Romania, Russia, Senegal, Sloval, Republic, Sudan, Switzerland, Syria, Tunisia, Turkey, Uganda and the Ukraine. -
Intoduction to Ethnobotany
Intoduction to Ethnobotany The diversity of plants and plant uses Draft, version November 22, 2018 Shipunov, Alexey (compiler). Introduction to Ethnobotany. The diversity of plant uses. November 22, 2018 version (draft). 358 pp. At the moment, this is based largely on P. Zhukovskij’s “Cultivated plants and their wild relatives” (1950, 1961), and A.C.Zeven & J.M.J. de Wet “Dictionary of cultivated plants and their regions of diversity” (1982). Title page image: Mandragora officinarum (Solanaceae), “female” mandrake, from “Hortus sanitatis” (1491). This work is dedicated to public domain. Contents Cultivated plants and their wild relatives 4 Dictionary of cultivated plants and their regions of diversity 92 Cultivated plants and their wild relatives 4 5 CEREALS AND OTHER STARCH PLANTS Wheat It is pointed out that the wild species of Triticum and related genera are found in arid areas; the greatest concentration of them is in the Soviet republics of Georgia and Armenia and these are regarded as their centre of origin. A table is given show- ing the geographical distribution of 20 species of Triticum, 3 diploid, 10 tetraploid and 7 hexaploid, six of the species are endemic in Georgia and Armenia: the diploid T. urarthu, the tetraploids T. timopheevi, T. palaeo-colchicum, T. chaldicum and T. carthlicum and the hexaploid T. macha, Transcaucasia is also considered to be the place of origin of T. vulgare. The 20 species are described in turn; they comprise 4 wild species, T. aegilopoides, T. urarthu (2n = 14), T. dicoccoides and T. chaldicum (2n = 28) and 16 cultivated species. A number of synonyms are indicated for most of the species. -
Abstract Background: Defnitive Comparison on Root Traits of Wheat Landraces, Ancient Wheat Species and Wild DOI: 10.17129/Botsci.747 Wheat Relatives Are Scarce
HAYATI AKMAN1*, NECDET AKGUN2, AHMET TAMKOC2 Botanical Sciences 95 (1): 1-8, 2017 Abstract Background: Defnitive comparison on root traits of wheat landraces, ancient wheat species and wild DOI: 10.17129/botsci.747 wheat relatives are scarce. Those adaptive genetic resources with superior root and shoot traits can be utilized in breeding programs. Copyright: © 2017 Akman et al. This is an open access article distri- Questions: Do modern wheats have more superior root and shoot traits than ancient wheat species and buted under the terms of the Creati- wild wheat relatives? ve Commons Attribution License, Studied species: We performed large-scale screening for signifcant root and shoot traits of 47 different which permits unrestricted use, dis- genotypes including cultivars, lines, landraces, ancient wheat species and wild wheat relatives belonging tribution, and reproduction in any medium, provided the original author to 14 different species. and source are credited. Study site and years: was carried out in Central Anatolian Conditions of Turkey from October, 2013 to July, 2014. Methods: This study was conducted at 200 cm long tube under feld weather conditions where plants can translate superior performance. Results: A wide range of variations in terms of root and shoot traits were observed among the screened wheat cultivars, lines, landraces, ancient wheat species and wild wheat relatives. The grain yield per plant and root length per plant varied from 2.11 to 12.30 g and 134.7 to 250.7 cm in the cultivars, lines and landraces, respectively, while they ranged from 0.23 to 6.49 g and 170.0 to 240 cm in the ancient wheat species and wild wheat relatives.