diversity Article Genetic Diversity of Hatchery-Bred Brown Trout (Salmo trutta) Compared with the Wild Population: Potential Effects of Stocking on the Indigenous Gene Pool of a Norwegian Reservoir Arne N. Linløkken 1,* , Stein I. Johnsen 2 and Wenche Johansen 3 1 Faculty of Applied Ecology, Agricultural Sciences and Biotechnology, Campus Evenstad, Inland Norway University of Applied Sciences, N-2418 Elverum, Norway 2 Norwegian Institute of Nature Research, Department Lillehammer, Vormstuguvegen 40, N-2624 Lillehammer, Norway;
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[email protected] Abstract: This study was conducted in Lake Savalen in southeastern Norway, focusing on genetic diversity and the structure of hatchery-reared brown trout (Salmo trutta) as compared with wild fish in the lake and in two tributaries. The genetic analysis, based on eight simple sequence repeat (SSR) markers, showed that hatchery bred single cohorts and an age structured sample of stocked and recaptured fish were genetically distinctly different from each other and from the wild fish groups. The sample of recaptured fish showed the lowest estimated effective population size Ne = 8.4, and Citation: Linløkken, A.N.; Johnsen, the highest proportion of siblings, despite its origin from five different cohorts of hatchery fish, S.I.; Johansen, W. Genetic Diversity of counting in total 84 parent fish. Single hatchery cohorts, originating from 13–24 parental fish, showed Hatchery-Bred Brown Trout (Salmo Ne = 10.5–19.9, suggesting that the recaptured fish descended from a narrow group of parents.