Insects As Indicators of Environmental Changing and Pollution: a Review of Appropriate Species and Their Monitoring
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Genomanalyse Von Prodiamesa Olivacea
Genomanalyse von Prodiamesa olivacea Dissertation zur Erlangung des Grades Doktor der Naturwissenschaften (Dr. rer. nat.) am Fachbereich Biologie der Johannes Gutenberg-Universität in Mainz Sarah Brunck geb. 08.08.1987 in Mainz Mainz, 2016 Dekan: 1. Berichterstatter: 2. Berichterstatter: Tag der mündlichen Prüfung: ii Inhaltsverzeichnis Inhaltsverzeichnis ................................................................................................................................ iii 1 Einleitung ........................................................................................................................................... 1 1.1 Die Familie der Chironomiden ................................................................................................. 1 1.1.1 Die Gattung Chironomus ..................................................................................................... 3 1.1.2 Die Gattung Prodiamesa ....................................................................................................... 6 1.2 Die Struktur von Insekten-Genomen am Beispiel der Chironomiden ............................... 9 1.2.1 Hochrepetitive DNA-Sequenzen ..................................................................................... 11 1.2.2 Mittelrepetitive DNA-Sequenzen bzw. Gen-Familien ................................................. 13 1.2.3 Gene und genregulatorische Sequenzen ........................................................................ 17 1.3 Zielsetzung ............................................................................................................................... -
68Db7887caa1daebbded4b0227
Editora Chefe Profª Drª Antonella Carvalho de Oliveira Assistentes Editoriais Natalia Oliveira Bruno Oliveira Flávia Roberta Barão Bibliotecário Maurício Amormino Júnior Projeto Gráfico e Diagramação Natália Sandrini de Azevedo Camila Alves de Cremo Karine de Lima Wisniewski Luiza Alves Batista Maria Alice Pinheiro 2020 by Atena Editora Imagens da Capa Copyright © Atena Editora Shutterstock Copyright do Texto © 2020 Os autores Edição de Arte Copyright da Edição © 2020 Atena Luiza Alves Batista Editora Revisão Direitos para esta edição cedidos à Atena Os Autores Editora pelos autores. Todo o conteúdo deste livro está licenciado sob uma Licença de Atribuição Creative Commons. Atribuição-Não-Comercial- NãoDerivativos 4.0 Internacional (CC BY-NC-ND 4.0). O conteúdo dos artigos e seus dados em sua forma, correção e confiabilidade são de responsabilidade exclusiva dos autores, inclusive não representam necessariamente a posição oficial da Atena Editora. Permitido o download da obra e o compartilhamento desde que sejam atribuídos créditos aos autores, mas sem a possibilidade de alterá-la de nenhuma forma ou utilizá-la para fins comerciais. A Atena Editora não se responsabiliza por eventuais mudanças ocorridas nos endereços convencionais ou eletrônicos citados nesta obra. Todos os manuscritos foram previamente submetidos à avaliação cega pelos pares, membros do Conselho Editorial desta Editora, tendo sido aprovados para a publicação. Conselho Editorial Ciências Humanas e Sociais Aplicadas Prof. Dr. Álvaro Augusto de Borba Barreto – Universidade Federal de Pelotas Prof. Dr. Alexandre Jose Schumacher – Instituto Federal de Educação, Ciência e Tecnologia do Paraná Prof. Dr. Américo Junior Nunes da Silva – Universidade do Estado da Bahia Prof. Dr. Antonio Carlos Frasson – Universidade Tecnológica Federal do Paraná Prof. -
The Mcguire Center for Lepidoptera and Biodiversity
Supplemental Information All specimens used within this study are housed in: the McGuire Center for Lepidoptera and Biodiversity (MGCL) at the Florida Museum of Natural History, Gainesville, USA (FLMNH); the University of Maryland, College Park, USA (UMD); the Muséum national d’Histoire naturelle in Paris, France (MNHN); and the Australian National Insect Collection in Canberra, Australia (ANIC). Methods DNA extraction protocol of dried museum specimens (detailed instructions) Prior to tissue sampling, dried (pinned or papered) specimens were assigned MGCL barcodes, photographed, and their labels digitized. Abdomens were then removed using sterile forceps, cleaned with 100% ethanol between each sample, and the remaining specimens were returned to their respective trays within the MGCL collections. Abdomens were placed in 1.5 mL microcentrifuge tubes with the apex of the abdomen in the conical end of the tube. For larger abdomens, 5 mL microcentrifuge tubes or larger were utilized. A solution of proteinase K (Qiagen Cat #19133) and genomic lysis buffer (OmniPrep Genomic DNA Extraction Kit) in a 1:50 ratio was added to each abdomen containing tube, sufficient to cover the abdomen (typically either 300 µL or 500 µL) - similar to the concept used in Hundsdoerfer & Kitching (1). Ratios of 1:10 and 1:25 were utilized for low quality or rare specimens. Low quality specimens were defined as having little visible tissue inside of the abdomen, mold/fungi growth, or smell of bacterial decay. Samples were incubated overnight (12-18 hours) in a dry air oven at 56°C. Importantly, we also adjusted the ratio depending on the tissue type, i.e., increasing the ratio for particularly large or egg-containing abdomens. -
Chironomidae Hirschkopf
Literatur Chironomidae Gesäuse U.A. zur Bestimmung und Ermittlung der Autökologie herangezogene Literatur: Albu, P. (1972): Două specii de Chironomide noi pentru ştiinţă în masivul Retezat.- St. şi Cerc. Biol., Seria Zoologie, 24: 15-20. Andersen, T.; Mendes, H.F. (2002): Neotropical and Mexican Mesosmittia Brundin, with the description of four new species (Insecta, Diptera, Chironomidae).- Spixiana, 25(2): 141-155. Andersen, T.; Sæther, O.A. (1993): Lerheimia, a new genus of Orthocladiinae from Africa (Diptera: Chironomidae).- Spixiana, 16: 105-112. Andersen, T.; Sæther, O.A.; Mendes, H.F. (2010): Neotropical Allocladius Kieffer, 1913 and Pseudosmittia Edwards, 1932 (Diptera: Chironomidae).- Zootaxa, 2472: 1-77. Baranov, V.A. (2011): New and rare species of Orthocladiinae (Diptera, Chironomidae) from the Crimea, Ukraine.- Vestnik zoologii, 45(5): 405-410. Boggero, A.; Zaupa, S.; Rossaro, B. (2014): Pseudosmittia fabioi sp. n., a new species from Sardinia (Diptera: Chironomidae, Orthocladiinae).- Journal of Entomological and Acarological Research, [S.l.],46(1): 1-5. Brundin, L. (1947): Zur Kenntnis der schwedischen Chironomiden.- Arkiv för Zoologi, 39 A(3): 1- 95. Brundin, L. (1956): Zur Systematik der Orthocladiinae (Dipt. Chironomidae).- Rep. Inst. Freshwat. Drottningholm 37: 5-185. Casas, J.J.; Laville, H. (1990): Micropsectra seguyi, n. sp. du groupe attenuata Reiss (Diptera: Chironomidae) de la Sierra Nevada (Espagne).- Annls Soc. ent. Fr. (N.S.), 26(3): 421-425. Caspers, N. (1983): Chironomiden-Emergenz zweier Lunzer Bäche, 1972.- Arch. Hydrobiol. Suppl. 65: 484-549. Caspers, N. (1987): Chaetocladius insolitus sp. n. (Diptera: Chironomidae) from Lunz, Austria. In: Saether, O.A. (Ed.): A conspectus of contemporary studies in Chironomidae (Diptera). -
Ohio EPA Macroinvertebrate Taxonomic Level December 2019 1 Table 1. Current Taxonomic Keys and the Level of Taxonomy Routinely U
Ohio EPA Macroinvertebrate Taxonomic Level December 2019 Table 1. Current taxonomic keys and the level of taxonomy routinely used by the Ohio EPA in streams and rivers for various macroinvertebrate taxonomic classifications. Genera that are reasonably considered to be monotypic in Ohio are also listed. Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Species Pennak 1989, Thorp & Rogers 2016 Porifera If no gemmules are present identify to family (Spongillidae). Genus Thorp & Rogers 2016 Cnidaria monotypic genera: Cordylophora caspia and Craspedacusta sowerbii Platyhelminthes Class (Turbellaria) Thorp & Rogers 2016 Nemertea Phylum (Nemertea) Thorp & Rogers 2016 Phylum (Nematomorpha) Thorp & Rogers 2016 Nematomorpha Paragordius varius monotypic genus Thorp & Rogers 2016 Genus Thorp & Rogers 2016 Ectoprocta monotypic genera: Cristatella mucedo, Hyalinella punctata, Lophopodella carteri, Paludicella articulata, Pectinatella magnifica, Pottsiella erecta Entoprocta Urnatella gracilis monotypic genus Thorp & Rogers 2016 Polychaeta Class (Polychaeta) Thorp & Rogers 2016 Annelida Oligochaeta Subclass (Oligochaeta) Thorp & Rogers 2016 Hirudinida Species Klemm 1982, Klemm et al. 2015 Anostraca Species Thorp & Rogers 2016 Species (Lynceus Laevicaudata Thorp & Rogers 2016 brachyurus) Spinicaudata Genus Thorp & Rogers 2016 Williams 1972, Thorp & Rogers Isopoda Genus 2016 Holsinger 1972, Thorp & Rogers Amphipoda Genus 2016 Gammaridae: Gammarus Species Holsinger 1972 Crustacea monotypic genera: Apocorophium lacustre, Echinogammarus ischnus, Synurella dentata Species (Taphromysis Mysida Thorp & Rogers 2016 louisianae) Crocker & Barr 1968; Jezerinac 1993, 1995; Jezerinac & Thoma 1984; Taylor 2000; Thoma et al. Cambaridae Species 2005; Thoma & Stocker 2009; Crandall & De Grave 2017; Glon et al. 2018 Species (Palaemon Pennak 1989, Palaemonidae kadiakensis) Thorp & Rogers 2016 1 Ohio EPA Macroinvertebrate Taxonomic Level December 2019 Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Informal grouping of the Arachnida Hydrachnidia Smith 2001 water mites Genus Morse et al. -
DNA Barcoding
Full-time PhD studies of Ecology and Environmental Protection Piotr Gadawski Species diversity and origin of non-biting midges (Chironomidae) from a geologically young lake PhD Thesis and its old spring system Performed in Department of Invertebrate Zoology and Hydrobiology in Institute of Ecology and Environmental Protection Różnorodność gatunkowa i pochodzenie fauny Supervisor: ochotkowatych (Chironomidae) z geologicznie Prof. dr hab. Michał Grabowski młodego jeziora i starego systemu źródlisk Auxiliary supervisor: Dr. Matteo Montagna, Assoc. Prof. Łódź, 2020 Łódź, 2020 Table of contents Acknowledgements ..........................................................................................................3 Summary ...........................................................................................................................4 General introduction .........................................................................................................6 Skadar Lake ...................................................................................................................7 Chironomidae ..............................................................................................................10 Species concept and integrative taxonomy .................................................................12 DNA barcoding ...........................................................................................................14 Chapter I. First insight into the diversity and ecology of non-biting midges (Diptera: Chironomidae) -
Phylogenomics Reveals Major Diversification Rate Shifts in The
bioRxiv preprint doi: https://doi.org/10.1101/517995; this version posted January 11, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Phylogenomics reveals major diversification rate shifts in the evolution of silk moths and 2 relatives 3 4 Hamilton CA1,2*, St Laurent RA1, Dexter, K1, Kitching IJ3, Breinholt JW1,4, Zwick A5, Timmermans 5 MJTN6, Barber JR7, Kawahara AY1* 6 7 Institutional Affiliations: 8 1Florida Museum of Natural History, University of Florida, Gainesville, FL 32611 USA 9 2Department of Entomology, Plant Pathology, & Nematology, University of Idaho, Moscow, ID 10 83844 USA 11 3Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK 12 4RAPiD Genomics, 747 SW 2nd Avenue #314, Gainesville, FL 32601. USA 13 5Australian National Insect Collection, CSIRO, Clunies Ross St, Acton, ACT 2601, Canberra, 14 Australia 15 6Department of Natural Sciences, Middlesex University, The Burroughs, London NW4 4BT, UK 16 7Department of Biological Sciences, Boise State University, Boise, ID 83725, USA 17 *Correspondence: [email protected] (CAH) or [email protected] (AYK) 18 19 20 Abstract 21 The silkmoths and their relatives (Bombycoidea) are an ecologically and taxonomically 22 diverse superfamily that includes some of the most charismatic species of all the Lepidoptera. 23 Despite displaying some of the most spectacular forms and ecological traits among insects, 24 relatively little attention has been given to understanding their evolution and the drivers of 25 their diversity. -
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Justin Peyton MS Graduate Program in Evolution, Ecology and Organismal Biology The Ohio State University 2015 Dissertation Committee: Professor David L. Denlinger Advisor Professor Zakee L. Sabree Professor Amanda A. Simcox Professor Joseph B. Williams Copyright by Justin Tyler Peyton 2015 Abstract As ectotherms with high surface area to volume ratio, insects are particularly susceptible to desiccation and low temperature stress. In this dissertation, I examine the molecular underpinnings of two facets of these stresses: rapid cold hardening and cryoprotective dehydration. Rapid cold hardening (RCH) is an insect’s ability to prepare for cold stress when that stress is preceded by an intermediate temperature for minutes to hours. In order to gain a better understanding of cold shock, recovery from cold shock, and RCH in Sarcophaga bullata I examine the transcriptome with microarray and the metabolome with gas chromatography coupled with mass spectrometry (GCMS) in response to these treatments. I found that RCH has very little effect on the transcriptome, but results in a shift from aerobic metabolism to glycolysis/gluconeogenesis during RCH and preserved metabolic homeostasis during recovery. In cryoprotective dehydration (CD), a moisture gradient is established between external ice and the moisture in the body of an insect. As temperatures decline, the external ice crystals grow, drawing in more moisture which dehydrates the insect causing its melting point to track the ambient temperature. To gain a better understanding of CD and dehydration in Belgica antarctica I explore the transcriptome with RNA sequencing ii and the metabolome with GCMS. -
National Park Service
Communities in Freshwater Coastal Rock Pools of Lake Superior, with a Focus on Chironomidae (Diptera) A Dissertation SUBMITTED TO THE FACULTY OF UNIVERSITY OF MINNESOTA BY Alexander Taurus Egan IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY Advisor: Leonard C. Ferrington, Jr. May 2014 © Alexander Taurus Egan 2014 Acknowledgements Projects of this size are rarely accomplished without the assistance and support of many people. Primarily, my advisor, Len Ferrington, has been a great source of guidance and enthusiasm. My committee, Jacques Finlay, Ralph Holzenthal, and Roger Moon, have raised the bar considerably by pushing, pulling and steering me toward being a better scientist. Friends and colleagues in the Chironomidae Research Group have made my graduate experience a time I will remember fondly, with Alyssa Anderson, Will Bouchard and Jessica Miller sharing in the successes, misfortunes, and minor but important goals that come with the territory. In particular, Petra Kranzfelder often filled the roles of peer advisor and sounding board for ideas both brilliant and ridiculous. The National Park service has been very generous in many ways, and specific thanks go to Brenda Moraska Lafrançois and Jay Glase, who provided early development and direction for this project. My colleagues Mark Edlund from the Science Museum of Minnesota and Toben Lafrançois from the Science Museum and Northland College have consistently offered excellent ecological advice on what the data mean, often acting as de facto advisors. Without support from Isle Royale National Park this project would not have been possible. In particular, the technical advice, equipment loans, and logistical assistance from Paul Brown, Rick Damstra, Joan Elias, and Mark Romanski were invaluable. -
12 List of Aquatic Insect Species in Baltic Amber
12 List of aquatic insect species in Baltic amber Odonata Epallagidae Litheuphaea ludwigi BECHLY , 1998 Platycnemidae Platycnemis antiqua (PICTET & HAGEN , 1856) Syn.: Agrion antiquum PICTET & HAGEN , 1856 Thaumatoneuridae Electrophenacolestes serafini NEL & ARILLO , 2006 Amphipterygida Pamita hannahdaltonae MAY & CARLE , 2005 Ephemeroptera Acanthametropodidae Analetris secundus GODUNKO & Kł o n o w s K a -ol e j n i K , 2006 Ameletidae Baltameletus oligocaenicus DE M OULIN , 1968 Electroletus soldani GODUNKO & NEU M ANN , 2006 Ameletopsidae Balticophlebia hennigi DE M OULIN , 1968 Ametropodidae Brevitibia intricans DE M OULIN , 1968 Babidae Baba lapidea KLUGE , GODUNKO & Kr z e m i ń s K i , 2006 Baetiscidae Balticobaetisca velteni st a n i c z e K & BECHLY , 2002 Baetidae Baetis anomala PICTET , 1856 Baetis gigantea HAGEN , 1856 Baetis grossa HAGEN , 1856 Baetis longipes HAGEN , 1856 290 Siphlonuridae Metretopus henningseni DE M OULIN , 1965 Metretopus trinervis DE M OULIN , 1968 Siphloplecton jaegeri DE M OULIN , 1968 Siphloplecton macrops (PICTET , 1856) Siphlonurus dubiosus DE M OULIN , 1968 Oligoneuriidae Cronicus anomalus (PICTET , 1856) Cronicus major DE M OULIN , 1968 Arthropleidae Electrogenia dewalschei DE M OULIN , 1956 Heptageniidae Burshtynogena fereci Go d u n K o & so n t a G , 2004 Cinygma? baltica DE M OULIN , 1968 Ecdyonurus (Nestormeus) groehnorum GODUNKO , 2007 Ecdyonurus (Nestormeus) leopoliensis GODUNKO , 2004 Heptagenia atypica DE M OULIN , 1968 Heptagenia bachofeni DE M OULIN , 1968 Heptagenia (Kageronia) fuscogrisea -
Attachment a Copies of Comment Letters Received on the Initial Study
Attachment A Copies of Comment Letters Received on the Initial Study From: Michael McWalters <[email protected]> Sent: Sunday, September 25, 2016 12:08 PM To: Berry, Whitney Subject: Alviso Top Golf Part 2 Hello Whitney, Are you the correct person to write my concerns to? Here is a list of my concerns. I live in the manufactured home park (labeled 2) for sound and noise. I’ve read many things regarding Top Golf, all of them have complaints of NOISE. Top Golf in Alexandria, SLC, Kansas City and Roseville have huge complaints regarding noise. The one is Austin sells $525,000 a month in alcohol. That is a ton of money, which this site has a new land owner and most likely will close as the new land owner wants to redevelop the land. Alexandria will most likely close and be moved as the noise is a concern to many and the land owner will not renew the lease with top golf. How will Top Golf and the City of San Jose make sure that I’m not going waking up by a live band or loud music at 11pm? Since Mayor Sam Liccardo sits on the VTA board I would expect that only 200 parking spaces should be available and EVERYONE ELSE CAN TAKE THE VTA AND BUS to attend Top Golf. That’s what your department is striving for. I am opposed to 1400 parking places, its obnoxious. Take the bus or light rail. Planning rams this car issue in apartments and now it’s time to move it to big business. -
Refinement of the Basin-Wide Index of Biotic Integrity for Non-Tidal Streams and Wadeable Rivers in the Chesapeake Bay Watershed
Refinement of the Basin-Wide Index of Biotic Integrity for Non-Tidal Streams and Wadeable Rivers in the Chesapeake Bay Watershed APPENDICES Appendix A: Taxonomic Classification Appendix B: Taxonomic Attributes Appendix C: Taxonomic Standardization Appendix D: Rarefaction Appendix E: Biological Metric Descriptions Appendix F: Abiotic Parameters for Evaluating Stream Environment Appendix G: Stream Classification Appendix H: HUC12 Watershed Characteristics in Bioregions Appendix I: Index Methodologies Appendix J: Scoring Methodologies Appendix K: Index Performance, Accuracy, and Precision Appendix L: Narrative Ratings and Maps of Index Scores Appendix M: Potential Biases in the Regional Index Ratings Appendix Citations Appendix A: Taxonomic Classification All taxa reported in Chessie BIBI database were assigned the appropriate Phylum, Subphylum, Class, Subclass, Order, Suborder, Family, Subfamily, Tribe, and Genus when applicable. A portion of the taxa reported were reported under an invalid name according to the ITIS database. These taxa were subsequently changed to the taxonomic name deemed valid by ITIS. Table A-1. The taxonomic hierarchy of stream macroinvertebrate taxa included in the Chesapeake Bay non-tidal database.