DNA Barcoding
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Wq-Rule4-12Kk L.7
L.7. Calculation of Minnesota Macroinvertebrate IBIs- Draft January 26, 2017 Introduction The Index of Biotic Integrity (IBI) is one of the primary tools used by the Minnesota Pollution Control Agency (MPCA) to determine if streams are meeting their aquatic life use goals. Calculation of an IBI involves the synthesis of macroinvertebrate community information into a numerical expression of stream health. In order to apply the MPCA Macroinvertebrate IBI (MIBI) to a macroinvertebrate dataset, it is essential that all data is collected using MPCA field and laboratory protocols (MPCA 2004, MPCA 2015). This document details the process for calculating the Minnesota MIBIs from raw macroinvertebrate samples. Summary of MIBI development To account for natural differences in macroinvertebrates communities in Minnesota, streams are assigned to different stream types. These stream types use different MIBI models and biocriteria to determine the condition of the macroinvertebrate assemblage and their attainment or nonattainment of the aqutic life beneficial use. The MPCA stratified Minnesota streams into nine macroinvertebrate stream types based on the expected natural composition of stream macroinvertebrates (Table 1). Stream type is differentiated by drainage area, geographic region, thermal regime, and gradient. These stream types are used to determine thresholds (i.e., biocriteria) that interpret the calculated MIBI as meeting or exceeding the aquatic life use goal. MIBIs were developed from five individual invertebrate stream groups, with large rivers, wadable high gradient and wabable low gradient stream types each being combined for the purposes of metric testing and evaluation. A complete description of the development of MIBIs can be found in MPCA (2014). -
The Predatory Behaviour of Monopelopia Tenuicalcar (Kieffer, 1918) Larvae in a Laboratory Experiment
J. Limnol., 2018; 77(s1): 88-94 DOI: 10.4081/jlimnol.2018.1792 This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC 4.0). The predatory behaviour of Monopelopia tenuicalcar (Kieffer, 1918) larvae in a laboratory experiment Vít SYROVÁTKA* Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic *Corresponding author: [email protected] ABSTRACT Larvae of the subfamily Tanypodinae are in general regarded as predators. Actual predation has been observed directly in only a few Tanypodinae species, but their behaviour and mouthpart morphology suggest that all Tanypodinae ingest food in the same way and thus are all predators. This view is reflected in most autecological databases. There remains uncertainty for some species, most notably for Monopelopia tenuicalcar (Kieffer, 1918). The uncertainty stems from the lack of direct observations, while gut content analysis points to non-animal food sources. A laboratory experiment was carried out in which larvae of Corynoneura sp. were offered to M. tenuicalcar in a set of Petri dishes. All predator and prey larvae were collected from the same locality, where they were the most abundant members of early spring littoral community. M. tenuicalcar showed clear predatory behaviour. In most cases (84 out of 86) the predator larva pierced the larva of Corynoneura and sucked its inner bodyonly content instead of engulfing it. Only in two cases did the predator engulf the whole victim. In all cases the seizing and processing of the prey was the same, with the ingestion of the food carried out by strong sucking. -
CHIRONOMUS Newsletter on Chironomidae Research
CHIRONOMUS Newsletter on Chironomidae Research No. 25 ISSN 0172-1941 (printed) 1891-5426 (online) November 2012 CONTENTS Editorial: Inventories - What are they good for? 3 Dr. William P. Coffman: Celebrating 50 years of research on Chironomidae 4 Dear Sepp! 9 Dr. Marta Margreiter-Kownacka 14 Current Research Sharma, S. et al. Chironomidae (Diptera) in the Himalayan Lakes - A study of sub- fossil assemblages in the sediments of two high altitude lakes from Nepal 15 Krosch, M. et al. Non-destructive DNA extraction from Chironomidae, including fragile pupal exuviae, extends analysable collections and enhances vouchering 22 Martin, J. Kiefferulus barbitarsis (Kieffer, 1911) and Kiefferulus tainanus (Kieffer, 1912) are distinct species 28 Short Communications An easy to make and simple designed rearing apparatus for Chironomidae 33 Some proposed emendations to larval morphology terminology 35 Chironomids in Quaternary permafrost deposits in the Siberian Arctic 39 New books, resources and announcements 43 Finnish Chironomidae 47 Chironomini indet. (Paratendipes?) from La Selva Biological Station, Costa Rica. Photo by Carlos de la Rosa. CHIRONOMUS Newsletter on Chironomidae Research Editors Torbjørn EKREM, Museum of Natural History and Archaeology, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway Peter H. LANGTON, 16, Irish Society Court, Coleraine, Co. Londonderry, Northern Ireland BT52 1GX The CHIRONOMUS Newsletter on Chironomidae Research is devoted to all aspects of chironomid research and aims to be an updated news bulletin for the Chironomidae research community. The newsletter is published yearly in October/November, is open access, and can be downloaded free from this website: http:// www.ntnu.no/ojs/index.php/chironomus. Publisher is the Museum of Natural History and Archaeology at the Norwegian University of Science and Technology in Trondheim, Norway. -
Dear Colleagues
NEW RECORDS OF CHIRONOMIDAE (DIPTERA) FROM CONTINENTAL FRANCE Joel Moubayed-Breil Applied ecology, 10 rue des Fenouils, 34070-Montpellier, France, Email: [email protected] Abstract Material recently collected in Continental France has allowed me to generate a list of 83 taxa of chironomids, including 37 new records to the fauna of France. According to published data on the chironomid fauna of France 718 chironomid species are hitherto known from the French territories. The nomenclature and taxonomy of the species listed are based on the last version of the Chironomidae data in Fauna Europaea, on recent revisions of genera and other recent publications relevant to taxonomy and nomenclature. Introduction French territories represent almost the largest Figure 1. Major biogeographic regions and subregions variety of aquatic ecosystems in Europe with of France respect to both physiographic and hydrographic aspects. According to literature on the chironomid fauna of France, some regions still are better Sites and methodology sampled then others, and the best sampled areas The identification of slide mounted specimens are: The northern and southern parts of the Alps was aided by recent taxonomic revisions and keys (regions 5a and 5b in figure 1); western, central to adults or pupal exuviae (Reiss and Säwedal and eastern parts of the Pyrenees (regions 6, 7, 8), 1981; Tuiskunen 1986; Serra-Tosio 1989; Sæther and South-Central France, including inland and 1990; Soponis 1990; Langton 1991; Sæther and coastal rivers (regions 9a and 9b). The remaining Wang 1995; Kyerematen and Sæther 2000; regions located in the North, the Middle and the Michiels and Spies 2002; Vårdal et al. -
Diptera: Corethrellidae) Author(S): Priyanka De Silva and Ximena E
First Report of the Mating Behavior of a Species of Frog-Biting Midge (Diptera: Corethrellidae) Author(s): Priyanka De Silva and Ximena E. Bernal Source: Florida Entomologist, 96(4):1522-1529. 2013. Published By: Florida Entomological Society DOI: http://dx.doi.org/10.1653/024.096.0434 URL: http://www.bioone.org/doi/full/10.1653/024.096.0434 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/ terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. 1522 Florida Entomologist 96(4) December 2013 FIRST REPORT OF THE MATING BEHAVIOR OF A SPECIES OF FROG-BITING MIDGE (DIPTERA: CORETHRELLIDAE) PRIYANKA DE SILVA1,* AND XIMENA E. BERNAL1, 2 1Department of Biological Science, Texas Tech University, P.O. Box 43131, Lubbock, TX, 79409, USA 2Smithsonian Tropical Research Institute, Apartado 2072, Balboa, Republic of Panama *Corresponding author; E-mail: [email protected] ABSTRACT Swarming is a common mating behavior present throughout Diptera and, in particular, in species of lower flies (Nematocerous Diptera). -
Aquatic Diptera As Indicators of Pollution in a Midwestern Stream
AQUATIC DIPTERA AS INDICATORS OF POLLUTION IN A MIDWESTERN STREAM GEORGE H. PAINE, JR. AND ARDEN R. GAUFIN Robert A. Taft Sanitary Engineering Center, Public Health Service, Cincinnati, Ohio A knowledge of the ecological requirements of aquatic organisms, especially the benthic forms, is of outstanding importance to biologists in determining the degree and extent of pollution in streams. An examination of bottom fauna serves to indicate conditions not only at the time of examination but also over considerable periods in the past. Those organisms having an annual life cycle will by their presence or absence indicate any unusual occurrence which took place during several previous months. Satisfactory use of aquatic organisms as indicators of pollution and self-purification of water is dependent upon a know- ledge of the normal habitats of these organisms and their sensitivity to varying environmental factors such as pollution. Among the aquatic invertebrates, insects such as the mayflies, stoneflies, and caddis flies are primarily restricted to clean water conditions. By comparison, forms such as the pulmonate snails, Tubificid worms, and certain species of leeches can more often be found under conditions where high organic and/or low oxygen content exist. Still other groups such as the Diptera, or true flies, are repre- sented by forms which may be found in all types of stream habitats from the cleanest situation to the most polluted water. Because aquatic Diptera are to be found in many different ecological niches in both clean and polluted water and many species are highly selective in their choice of habitat, they constitute one of the most important groups of indicator organisms. -
Zootaxa, Japanese Pseudosmittia Edwards (Diptera: Chironomidae)
Zootaxa 1198: 21–51 (2006) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 1198 Copyright © 2006 Magnolia Press ISSN 1175-5334 (online edition) Japanese Pseudosmittia Edwards (Diptera: Chironomidae) OLE A. SÆTHER The Natural History Collections, Bergen Museum, University of Bergen, N-5020 Bergen, Norway. E-mail: [email protected] Abstract The types of species previously placed in Pseudosmittia Edwards and some related genera in the Sasa collection at The National Museum of Sciences, Tokyo, Japan, have been examined. Twenty- four new synonyms are given: Pseudosmittia ogasatridecima Sasa et Suzuki, 1997a is a synonym of P. bifurcata (Tokunaga, 1936); P. jintuvicesima Sasa, 1996, and P. seiryupequea Sasa, Suzuki et Sakai, 1998 of P. danconai (Marcuzzi, 1947); P. mongolzeaea Sasa et Suzuki, 1997b of P. f orc ipa ta (Goetghebuer, 1921); P. hachijotertia Sasa, 1994 of P. holsata Thienemann et Strenzke, 1940; P. itachibifurca Sasa et Kawai, 1987, P. furudobifurca Sasa et Arakawa, 1994, P. hibaribifurca Sasa, 1993, and P. (Nikismittia) shofukuundecima Sasa, 1998 of P. mathildae Albu, 1968; P. yakymenea Sasa et Suzuki, 2000a, and P. yakyneoa Sasa et Suzuki, 2000a of P. nishiharaensis Sasa et Hasegawa, 1988; P. kurobeokasia Sasa et Okazawa, 1992a, P. togarisea Sasa et Okazawa, 1992b, P. hachijosecunda Sasa, 1994, P. to ya m a re s e a Sasa, 1996, P. yakyopea Sasa et Suzuki, 2000a, P. yakypequea Sasa et Suzuki, 2000a, Parakiefferiella hidakagehea Sasa et Suzuki, 2000b, and Parakiefferiella hidakaheia Sasa et Suzuki, 2000b of Pseudosmittia oxoniana (Edwards, 1922); P. famikelea Sasa, 1996a of P. tokaraneoa Sasa et Suzuki, 1995; P. -
Diptera: Chironomidae) with Terrestrial and Semiaqutic Larvae from Ukraine
Українська ентомофауністика 2011, 2(5) : 13–15 Дата публікації: 31.10.2011 New and additional records of the non-biting midges (Diptera: Chironomidae) with terrestrial and semiaqutic larvae from Ukraine. V. A. Baranov Dept. of Zoology and Animal Ecology V.N. Karazin Kharkiv National University 4 Svoboda Sq. 61077, Kharkiv, Ukraine Ukrainian Science Research Institute of Ecological Problems Bakulina St. 6, 61166, Kharkiv, Ukraine E-mail: [email protected] Baranov V. A. New records of the non-biting midges (Diptera: Chironomidae) with terrestrial and semiaqutic larvae from Ukraine. Summary. Seven species of chironomid midges, Bryophaenocladius furcatus (Kieffer, 1916), Hydrosmittia oxoniana (Edwards, 1922), Smittia edwardsi Goethgebuer, 1932 , Smittia foliacea (Kieffer, 1921), Paraphaenocladius penerasus (Edwards, 1929), Paraphaenocladius impensus (Walker, 1856), Psedosmittia forcipata (Goetghebuer, 1921), are recorded for the first time from Ukraine based on adult specimens and larvae. Camptocladius stercorarius (De Geer, 1776) is recorded for the second time. Keywords : Diptera, Chironomidae, non-biting midges, terrestrial larvae, adults, first record, Ukraine,. Баранов В. О. Нові знахідки комарів -дзвінців (Diptera: Chironomidae) з наземними та напівводними личинками з України. Ре - зюме. Вперше у фауні України відмічено сім видів комарів-дзвінців: Bryophaenocladius furcatus (Kieffer, 1916), Hydrosmittia oxoniana (Edwards, 1922), Smittia edwardsi Goethgebuer, 1932 , Smittia foliacea (Kieffer, 1921), Paraphaenocladius penerasus (Edwards, -
Chironomidae Hirschkopf
Literatur Chironomidae Gesäuse U.A. zur Bestimmung und Ermittlung der Autökologie herangezogene Literatur: Albu, P. (1972): Două specii de Chironomide noi pentru ştiinţă în masivul Retezat.- St. şi Cerc. Biol., Seria Zoologie, 24: 15-20. Andersen, T.; Mendes, H.F. (2002): Neotropical and Mexican Mesosmittia Brundin, with the description of four new species (Insecta, Diptera, Chironomidae).- Spixiana, 25(2): 141-155. Andersen, T.; Sæther, O.A. (1993): Lerheimia, a new genus of Orthocladiinae from Africa (Diptera: Chironomidae).- Spixiana, 16: 105-112. Andersen, T.; Sæther, O.A.; Mendes, H.F. (2010): Neotropical Allocladius Kieffer, 1913 and Pseudosmittia Edwards, 1932 (Diptera: Chironomidae).- Zootaxa, 2472: 1-77. Baranov, V.A. (2011): New and rare species of Orthocladiinae (Diptera, Chironomidae) from the Crimea, Ukraine.- Vestnik zoologii, 45(5): 405-410. Boggero, A.; Zaupa, S.; Rossaro, B. (2014): Pseudosmittia fabioi sp. n., a new species from Sardinia (Diptera: Chironomidae, Orthocladiinae).- Journal of Entomological and Acarological Research, [S.l.],46(1): 1-5. Brundin, L. (1947): Zur Kenntnis der schwedischen Chironomiden.- Arkiv för Zoologi, 39 A(3): 1- 95. Brundin, L. (1956): Zur Systematik der Orthocladiinae (Dipt. Chironomidae).- Rep. Inst. Freshwat. Drottningholm 37: 5-185. Casas, J.J.; Laville, H. (1990): Micropsectra seguyi, n. sp. du groupe attenuata Reiss (Diptera: Chironomidae) de la Sierra Nevada (Espagne).- Annls Soc. ent. Fr. (N.S.), 26(3): 421-425. Caspers, N. (1983): Chironomiden-Emergenz zweier Lunzer Bäche, 1972.- Arch. Hydrobiol. Suppl. 65: 484-549. Caspers, N. (1987): Chaetocladius insolitus sp. n. (Diptera: Chironomidae) from Lunz, Austria. In: Saether, O.A. (Ed.): A conspectus of contemporary studies in Chironomidae (Diptera). -
Checklist of the Family Chironomidae (Diptera) of Finland
A peer-reviewed open-access journal ZooKeys 441: 63–90 (2014)Checklist of the family Chironomidae (Diptera) of Finland 63 doi: 10.3897/zookeys.441.7461 CHECKLIST www.zookeys.org Launched to accelerate biodiversity research Checklist of the family Chironomidae (Diptera) of Finland Lauri Paasivirta1 1 Ruuhikoskenkatu 17 B 5, FI-24240 Salo, Finland Corresponding author: Lauri Paasivirta ([email protected]) Academic editor: J. Kahanpää | Received 10 March 2014 | Accepted 26 August 2014 | Published 19 September 2014 http://zoobank.org/F3343ED1-AE2C-43B4-9BA1-029B5EC32763 Citation: Paasivirta L (2014) Checklist of the family Chironomidae (Diptera) of Finland. In: Kahanpää J, Salmela J (Eds) Checklist of the Diptera of Finland. ZooKeys 441: 63–90. doi: 10.3897/zookeys.441.7461 Abstract A checklist of the family Chironomidae (Diptera) recorded from Finland is presented. Keywords Finland, Chironomidae, species list, biodiversity, faunistics Introduction There are supposedly at least 15 000 species of chironomid midges in the world (Armitage et al. 1995, but see Pape et al. 2011) making it the largest family among the aquatic insects. The European chironomid fauna consists of 1262 species (Sæther and Spies 2013). In Finland, 780 species can be found, of which 37 are still undescribed (Paasivirta 2012). The species checklist written by B. Lindeberg on 23.10.1979 (Hackman 1980) included 409 chironomid species. Twenty of those species have been removed from the checklist due to various reasons. The total number of species increased in the 1980s to 570, mainly due to the identification work by me and J. Tuiskunen (Bergman and Jansson 1983, Tuiskunen and Lindeberg 1986). -
Table of Contents 2
Southwest Association of Freshwater Invertebrate Taxonomists (SAFIT) List of Freshwater Macroinvertebrate Taxa from California and Adjacent States including Standard Taxonomic Effort Levels 1 March 2011 Austin Brady Richards and D. Christopher Rogers Table of Contents 2 1.0 Introduction 4 1.1 Acknowledgments 5 2.0 Standard Taxonomic Effort 5 2.1 Rules for Developing a Standard Taxonomic Effort Document 5 2.2 Changes from the Previous Version 6 2.3 The SAFIT Standard Taxonomic List 6 3.0 Methods and Materials 7 3.1 Habitat information 7 3.2 Geographic Scope 7 3.3 Abbreviations used in the STE List 8 3.4 Life Stage Terminology 8 4.0 Rare, Threatened and Endangered Species 8 5.0 Literature Cited 9 Appendix I. The SAFIT Standard Taxonomic Effort List 10 Phylum Silicea 11 Phylum Cnidaria 12 Phylum Platyhelminthes 14 Phylum Nemertea 15 Phylum Nemata 16 Phylum Nematomorpha 17 Phylum Entoprocta 18 Phylum Ectoprocta 19 Phylum Mollusca 20 Phylum Annelida 32 Class Hirudinea Class Branchiobdella Class Polychaeta Class Oligochaeta Phylum Arthropoda Subphylum Chelicerata, Subclass Acari 35 Subphylum Crustacea 47 Subphylum Hexapoda Class Collembola 69 Class Insecta Order Ephemeroptera 71 Order Odonata 95 Order Plecoptera 112 Order Hemiptera 126 Order Megaloptera 139 Order Neuroptera 141 Order Trichoptera 143 Order Lepidoptera 165 2 Order Coleoptera 167 Order Diptera 219 3 1.0 Introduction The Southwest Association of Freshwater Invertebrate Taxonomists (SAFIT) is charged through its charter to develop standardized levels for the taxonomic identification of aquatic macroinvertebrates in support of bioassessment. This document defines the standard levels of taxonomic effort (STE) for bioassessment data compatible with the Surface Water Ambient Monitoring Program (SWAMP) bioassessment protocols (Ode, 2007) or similar procedures. -
ARTHROPODA Subphylum Hexapoda Protura, Springtails, Diplura, and Insects
NINE Phylum ARTHROPODA SUBPHYLUM HEXAPODA Protura, springtails, Diplura, and insects ROD P. MACFARLANE, PETER A. MADDISON, IAN G. ANDREW, JOCELYN A. BERRY, PETER M. JOHNS, ROBERT J. B. HOARE, MARIE-CLAUDE LARIVIÈRE, PENELOPE GREENSLADE, ROSA C. HENDERSON, COURTenaY N. SMITHERS, RicarDO L. PALMA, JOHN B. WARD, ROBERT L. C. PILGRIM, DaVID R. TOWNS, IAN McLELLAN, DAVID A. J. TEULON, TERRY R. HITCHINGS, VICTOR F. EASTOP, NICHOLAS A. MARTIN, MURRAY J. FLETCHER, MARLON A. W. STUFKENS, PAMELA J. DALE, Daniel BURCKHARDT, THOMAS R. BUCKLEY, STEVEN A. TREWICK defining feature of the Hexapoda, as the name suggests, is six legs. Also, the body comprises a head, thorax, and abdomen. The number A of abdominal segments varies, however; there are only six in the Collembola (springtails), 9–12 in the Protura, and 10 in the Diplura, whereas in all other hexapods there are strictly 11. Insects are now regarded as comprising only those hexapods with 11 abdominal segments. Whereas crustaceans are the dominant group of arthropods in the sea, hexapods prevail on land, in numbers and biomass. Altogether, the Hexapoda constitutes the most diverse group of animals – the estimated number of described species worldwide is just over 900,000, with the beetles (order Coleoptera) comprising more than a third of these. Today, the Hexapoda is considered to contain four classes – the Insecta, and the Protura, Collembola, and Diplura. The latter three classes were formerly allied with the insect orders Archaeognatha (jumping bristletails) and Thysanura (silverfish) as the insect subclass Apterygota (‘wingless’). The Apterygota is now regarded as an artificial assemblage (Bitsch & Bitsch 2000).