Refinement of the Basin-Wide Index of Biotic Integrity for Non-Tidal Streams and Wadeable Rivers in the Chesapeake Bay Watershed

Total Page:16

File Type:pdf, Size:1020Kb

Refinement of the Basin-Wide Index of Biotic Integrity for Non-Tidal Streams and Wadeable Rivers in the Chesapeake Bay Watershed Refinement of the Basin-Wide Index of Biotic Integrity for Non-Tidal Streams and Wadeable Rivers in the Chesapeake Bay Watershed APPENDICES Appendix A: Taxonomic Classification Appendix B: Taxonomic Attributes Appendix C: Taxonomic Standardization Appendix D: Rarefaction Appendix E: Biological Metric Descriptions Appendix F: Abiotic Parameters for Evaluating Stream Environment Appendix G: Stream Classification Appendix H: HUC12 Watershed Characteristics in Bioregions Appendix I: Index Methodologies Appendix J: Scoring Methodologies Appendix K: Index Performance, Accuracy, and Precision Appendix L: Narrative Ratings and Maps of Index Scores Appendix M: Potential Biases in the Regional Index Ratings Appendix Citations Appendix A: Taxonomic Classification All taxa reported in Chessie BIBI database were assigned the appropriate Phylum, Subphylum, Class, Subclass, Order, Suborder, Family, Subfamily, Tribe, and Genus when applicable. A portion of the taxa reported were reported under an invalid name according to the ITIS database. These taxa were subsequently changed to the taxonomic name deemed valid by ITIS. Table A-1. The taxonomic hierarchy of stream macroinvertebrate taxa included in the Chesapeake Bay non-tidal database.
Recommended publications
  • (Diptera: Chironomidae), with The
    Zootaxa 2497: 1–36 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) The problems with Polypedilum Kieffer (Diptera: Chironomidae), with the description of Probolum subgen. n. OLE A. SÆTHER1, TROND ANDERSEN2,5, LUIZ C. PINHO3 & HUMBERTO F. MENDES4 1, 2 & 4Department of Natural History, Bergen Museum, University of Bergen, Pb. 7800, N-5020 Bergen, Norway. 3Departamento de Biologia, FFCLRP-USP, Avenida Bandeirantes, n. 3900, CEP 14040-901, Ribeirão Preto - SP, Brazil. E-mails: [email protected], [email protected], [email protected], [email protected] 5Corresponding author. E-mail: [email protected] Table of contents Abstract ............................................................................................................................................................................... 2 Introduction ......................................................................................................................................................................... 2 Material and methods .......................................................................................................................................................... 3 Systematics .......................................................................................................................................................................... 3 Polypedilum subgenus Tripedilum Kieffer .......................................................................................................................
    [Show full text]
  • FINAL REPORT Distribution and Habitat of the Tennessee
    0 FINAL REPORT Distribution and Habitat of the Tennessee Bottlebrush Crayfish, Barbicambarus simmonsi ILLINOIS NATURAL HISTORY SURVEY PRAIRIE RESEARCH INSTITUTE UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN 1816 S. OAK CHAMPAIGN, IL 61820 INHS TECHNICAL REPORT 2014(19) BY Andrew J. Stites Illinois Natural History Survey 1816 S. Oak Champaign, IL 61820 Christopher A. Taylor, Ph. D. Illinois Natural History Survey 1816 S. Oak Champaign, IL 61820 PREPARED FOR: Tennessee Department of Environment and Conservation William R. Snodgrass Tennessee Tower 312 Rosa L. Parks Ave Nashville, TN 37243 20 July 2014 1 Introduction Crayfish are large aquatic invertebrates that have significant affects upon aquatic ecosystems and often comprise a large portion of an aquatic systems biomass (Taylor and Soucek 2010). Crayfish are good indicators of ecosystem health because they serve vital roles within aquatic systems, such as that of a primary consumer breaking down plants, woody debris and detritus into fine particulate organic matter (Parkyn and others 2001). In addition, crayfish can function as scavengers and predators of fish and invertebrates (Momot 1995; Taylor and Soucek 2010; Thomas and Taylor 2013). Finally, crayfish also have the capability to significantly alter their habitats via vegetation reduction and substrate disturbance (Momot 1995). The genus Barbicambarus was comprised of one known species, B. cornutus, until 2010 when B. simmonsi (Fig. 1) was described (Taylor and Schuster 2010). The crayfish in this genus are characterized by having densely setose antennae, a larger than average body size, and a strongly dorsoventrally flattened carapace (Taylor and Schuster 2010). B. cornutus can be found within the Green River basin in Kentucky and Tennessee and occurs most commonly under large flat boulders along creek margins where there is current (Taylor and Schuster 2004).
    [Show full text]
  • Abstract Spatial Distribution of Benthic Invertebrates In
    ABSTRACT SPATIAL DISTRIBUTION OF BENTHIC INVERTEBRATES IN LAKE WINNEBAGO, WISCONSIN By Courtney L. Heling Numerous studies have examined the distribution of benthic invertebrates in lakes through space and time. However, most studies typically focus on single habitats or individual taxa rather than sampling comprehensively in multiple habitats in a single system. The focus of this study was to quantify the spatial distribution of the macroinvertebrate taxa present in three major lake zones (profundal, offshore reef, and littoral) in Lake Winnebago, Wisconsin, with a particular emphasis on chironomid distribution, and to determine what factors drove patterns in variation. The profundal zone was sampled for two consecutive years in August to determine if changes in spatial variation occurred from one year to the next. Using a variety of sampling methods, invertebrates were collected from all three zones in 2013 and the profundal zone in 2014. Additionally, numerous physical and biological variables were measured at each sampling site. Benthic invertebrate densities ranged from 228 to 66,761 individuals per m2 and varied among lake zones and substrates. Zebra mussels (Dreissena polymorpha) were numerically dominant in both the offshore reef and littoral zones, while chironomids and oligochaetes comprised approximately 75% of profundal invertebrates sampled. Principal components analysis (PCA) showed that chironomid community structure differed highly among the three major lake zones. The littoral and offshore reef zones had the highest chironomid taxa richness, while the profundal zone, where Procladius spp. and Chironomus spp. were dominant, had lower richness. Chironomid density and community structure exhibited spatial variation within the profundal zone. The abundance of chironomids was correlated with several habitat variables, including organic matter content of the sediments.
    [Show full text]
  • CHIRONOMUS Newsletter on Chironomidae Research
    CHIRONOMUS Newsletter on Chironomidae Research No. 25 ISSN 0172-1941 (printed) 1891-5426 (online) November 2012 CONTENTS Editorial: Inventories - What are they good for? 3 Dr. William P. Coffman: Celebrating 50 years of research on Chironomidae 4 Dear Sepp! 9 Dr. Marta Margreiter-Kownacka 14 Current Research Sharma, S. et al. Chironomidae (Diptera) in the Himalayan Lakes - A study of sub- fossil assemblages in the sediments of two high altitude lakes from Nepal 15 Krosch, M. et al. Non-destructive DNA extraction from Chironomidae, including fragile pupal exuviae, extends analysable collections and enhances vouchering 22 Martin, J. Kiefferulus barbitarsis (Kieffer, 1911) and Kiefferulus tainanus (Kieffer, 1912) are distinct species 28 Short Communications An easy to make and simple designed rearing apparatus for Chironomidae 33 Some proposed emendations to larval morphology terminology 35 Chironomids in Quaternary permafrost deposits in the Siberian Arctic 39 New books, resources and announcements 43 Finnish Chironomidae 47 Chironomini indet. (Paratendipes?) from La Selva Biological Station, Costa Rica. Photo by Carlos de la Rosa. CHIRONOMUS Newsletter on Chironomidae Research Editors Torbjørn EKREM, Museum of Natural History and Archaeology, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway Peter H. LANGTON, 16, Irish Society Court, Coleraine, Co. Londonderry, Northern Ireland BT52 1GX The CHIRONOMUS Newsletter on Chironomidae Research is devoted to all aspects of chironomid research and aims to be an updated news bulletin for the Chironomidae research community. The newsletter is published yearly in October/November, is open access, and can be downloaded free from this website: http:// www.ntnu.no/ojs/index.php/chironomus. Publisher is the Museum of Natural History and Archaeology at the Norwegian University of Science and Technology in Trondheim, Norway.
    [Show full text]
  • Wild About Learning
    WILD ABOUT LEARNING An Interdisciplinary Unit Fostering Discovery Learning Written on a 4th grade reading level, Wild Discoveries: Wacky New Animals, is perfect for every kid who loves wacky animals! With engaging full-color photos throughout, the book draws readers right into the animal action! Wild Discoveries features newly discovered species from around the world--such as the Shocking Pink Dragon and the Green Bomber. These wacky species are organized by region with fun facts about each one's amazing abilities and traits. The book concludes with a special section featuring new species discovered by kids! Heather L. Montgomery writes about science and nature for kids. Her subject matter ranges from snake tongues to snail poop. Heather is an award-winning teacher who uses yuck appeal to engage young minds. During a typical school visit, petrified parts and tree guts inspire reluctant writers and encourage scientific thinking. Heather has a B.S. in Biology and a M.S. in Environmental Education. When she is not writing, you can find her painting her face with mud at the McDowell Environmental Center where she is the Education Coordinator. Heather resides on the Tennessee/Alabama border. Learn more about her ten books at www.HeatherLMontgomery.com. Dear Teachers, Photo by Sonya Sones As I wrote Wild Discoveries: Wacky New Animals, I was astounded by how much I learned. As expected, I learned amazing facts about animals and the process of scientifically describing new species, but my knowledge also grew in subjects such as geography, math and language arts. I have developed this unit to share that learning growth with children.
    [Show full text]
  • Chironominae 8.1
    CHIRONOMINAE 8.1 SUBFAMILY CHIRONOMINAE 8 DIAGNOSIS: Antennae 4-8 segmented, rarely reduced. Labrum with S I simple, palmate or plumose; S II simple, apically fringed or plumose; S III simple; S IV normal or sometimes on pedicel. Labral lamellae usually well developed, but reduced or absent in some taxa. Mentum usually with 8-16 well sclerotized teeth; sometimes central teeth or entire mentum pale or poorly sclerotized; rarely teeth fewer than 8 or modified as seta-like projections. Ventromental plates well developed and usually striate, but striae reduced or vestigial in some taxa; beard absent. Prementum without dense brushes of setae. Body usually with anterior and posterior parapods and procerci well developed; setal fringe not present, but sometimes with bifurcate pectinate setae. Penultimate segment sometimes with 1-2 pairs of ventral tubules; antepenultimate segment sometimes with lateral tubules. Anal tubules usually present, reduced in brackish water and marine taxa. NOTESTES: Usually the most abundant subfamily (in terms of individuals and taxa) found on the Coastal Plain of the Southeast. Found in fresh, brackish and salt water (at least one truly marine genus). Most larvae build silken tubes in or on substrate; some mine in plants, dead wood or sediments; some are free- living; some build transportable cases. Many larvae feed by spinning silk catch-nets, allowing them to fill with detritus, etc., and then ingesting the net; some taxa are grazers; some are predacious. Larvae of several taxa (especially Chironomus) have haemoglobin that gives them a red color and the ability to live in low oxygen conditions. With only one exception (Skutzia), at the generic level the larvae of all described (as adults) southeastern Chironominae are known.
    [Show full text]
  • The Beetle Fauna of Dominica, Lesser Antilles (Insecta: Coleoptera): Diversity and Distribution
    INSECTA MUNDI, Vol. 20, No. 3-4, September-December, 2006 165 The beetle fauna of Dominica, Lesser Antilles (Insecta: Coleoptera): Diversity and distribution Stewart B. Peck Department of Biology, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada stewart_peck@carleton. ca Abstract. The beetle fauna of the island of Dominica is summarized. It is presently known to contain 269 genera, and 361 species (in 42 families), of which 347 are named at a species level. Of these, 62 species are endemic to the island. The other naturally occurring species number 262, and another 23 species are of such wide distribution that they have probably been accidentally introduced and distributed, at least in part, by human activities. Undoubtedly, the actual numbers of species on Dominica are many times higher than now reported. This highlights the poor level of knowledge of the beetles of Dominica and the Lesser Antilles in general. Of the species known to occur elsewhere, the largest numbers are shared with neighboring Guadeloupe (201), and then with South America (126), Puerto Rico (113), Cuba (107), and Mexico-Central America (108). The Antillean island chain probably represents the main avenue of natural overwater dispersal via intermediate stepping-stone islands. The distributional patterns of the species shared with Dominica and elsewhere in the Caribbean suggest stages in a dynamic taxon cycle of species origin, range expansion, distribution contraction, and re-speciation. Introduction windward (eastern) side (with an average of 250 mm of rain annually). Rainfall is heavy and varies season- The islands of the West Indies are increasingly ally, with the dry season from mid-January to mid- recognized as a hotspot for species biodiversity June and the rainy season from mid-June to mid- (Myers et al.
    [Show full text]
  • Biologie, Vývoj a Zoogeografie Vybraných Saproxylických Skupin
    1 Masarykova univerzita Přírodovědecká fakulta Katedra zoologie a ekologie Biologie, vývoj a zoogeografie vybraných saproxylických skupin orientálních druhů čeledi Stratiomyidae Diplomová práce 2007 Prof. RNDr. R. Rozkošný, Dr. Sc. Alena Bučánková 2 Biologie, vývoj a zoogeografie vybraných saproxylických skupin orientálních druhů čeledi Stratiomyidae Abstrakt Je popsána morfologie, biologie a zoogeografie larev čtyř druhů z čeledi Stratiomyidae. Dva z nich, Pegadomyia pruinosa a Craspedometopon sp. n., patří do podčeledi Pachygasterinae, další dva, Adoxomyia bistriata a Cyphomyia bicarinata , patří do podčeledi Clitellariinae. Larvy byly sbírány Dr. D. Kovacem pod kůrou padlých stromů v Malysii a Thajsku. Saproxylický způsob života larev v rámci celé čeledi je zde diskutován jako původní stav. Byly vytypovány morfologické a biologické znaky larev s možným fylogenetickým významem a jejich platnost byla vyzkoušena v kladistických programech Nona a Winclada. Zjištěný fylogenetický vztah hlavních podčeledí odpovídá v podstatě současnému systému čeledi. Překážkou detailnímu vyhodnocení jsou zatím jen nedostatečné popisy larev a jejich malá znalost, zvláště v tropických oblastech. Biology, development and zoogeography of some saproxylic Oriental species of Stratiomyidae (Diptera) Abstract The morphology, biology and zoogeography of four larvae of Stratiomyidae are described. Two of them, Pegadomyia pruinosa , Craspedometopon sp. n. belong to the subfamily Pachygasteinae, the others, Adoxomyia bistriata and Cyphomyia bicarinata are placed to the subfamily Clitellariinae. The larvae were collected under the bark of fallen trees in Malaysia and Thailand by Dr. D. Kovac. The saproxylic habitat of stratiomyid larvae is discussed in this thesis as an original state. The morphological and biological characters of possible phylogenetic significance are evaluated and their value was verified with use of Nona and Winclada programs.
    [Show full text]
  • Zootaxa, Japanese Pseudosmittia Edwards (Diptera: Chironomidae)
    Zootaxa 1198: 21–51 (2006) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 1198 Copyright © 2006 Magnolia Press ISSN 1175-5334 (online edition) Japanese Pseudosmittia Edwards (Diptera: Chironomidae) OLE A. SÆTHER The Natural History Collections, Bergen Museum, University of Bergen, N-5020 Bergen, Norway. E-mail: [email protected] Abstract The types of species previously placed in Pseudosmittia Edwards and some related genera in the Sasa collection at The National Museum of Sciences, Tokyo, Japan, have been examined. Twenty- four new synonyms are given: Pseudosmittia ogasatridecima Sasa et Suzuki, 1997a is a synonym of P. bifurcata (Tokunaga, 1936); P. jintuvicesima Sasa, 1996, and P. seiryupequea Sasa, Suzuki et Sakai, 1998 of P. danconai (Marcuzzi, 1947); P. mongolzeaea Sasa et Suzuki, 1997b of P. f orc ipa ta (Goetghebuer, 1921); P. hachijotertia Sasa, 1994 of P. holsata Thienemann et Strenzke, 1940; P. itachibifurca Sasa et Kawai, 1987, P. furudobifurca Sasa et Arakawa, 1994, P. hibaribifurca Sasa, 1993, and P. (Nikismittia) shofukuundecima Sasa, 1998 of P. mathildae Albu, 1968; P. yakymenea Sasa et Suzuki, 2000a, and P. yakyneoa Sasa et Suzuki, 2000a of P. nishiharaensis Sasa et Hasegawa, 1988; P. kurobeokasia Sasa et Okazawa, 1992a, P. togarisea Sasa et Okazawa, 1992b, P. hachijosecunda Sasa, 1994, P. to ya m a re s e a Sasa, 1996, P. yakyopea Sasa et Suzuki, 2000a, P. yakypequea Sasa et Suzuki, 2000a, Parakiefferiella hidakagehea Sasa et Suzuki, 2000b, and Parakiefferiella hidakaheia Sasa et Suzuki, 2000b of Pseudosmittia oxoniana (Edwards, 1922); P. famikelea Sasa, 1996a of P. tokaraneoa Sasa et Suzuki, 1995; P.
    [Show full text]
  • Ohio EPA Macroinvertebrate Taxonomic Level December 2019 1 Table 1. Current Taxonomic Keys and the Level of Taxonomy Routinely U
    Ohio EPA Macroinvertebrate Taxonomic Level December 2019 Table 1. Current taxonomic keys and the level of taxonomy routinely used by the Ohio EPA in streams and rivers for various macroinvertebrate taxonomic classifications. Genera that are reasonably considered to be monotypic in Ohio are also listed. Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Species Pennak 1989, Thorp & Rogers 2016 Porifera If no gemmules are present identify to family (Spongillidae). Genus Thorp & Rogers 2016 Cnidaria monotypic genera: Cordylophora caspia and Craspedacusta sowerbii Platyhelminthes Class (Turbellaria) Thorp & Rogers 2016 Nemertea Phylum (Nemertea) Thorp & Rogers 2016 Phylum (Nematomorpha) Thorp & Rogers 2016 Nematomorpha Paragordius varius monotypic genus Thorp & Rogers 2016 Genus Thorp & Rogers 2016 Ectoprocta monotypic genera: Cristatella mucedo, Hyalinella punctata, Lophopodella carteri, Paludicella articulata, Pectinatella magnifica, Pottsiella erecta Entoprocta Urnatella gracilis monotypic genus Thorp & Rogers 2016 Polychaeta Class (Polychaeta) Thorp & Rogers 2016 Annelida Oligochaeta Subclass (Oligochaeta) Thorp & Rogers 2016 Hirudinida Species Klemm 1982, Klemm et al. 2015 Anostraca Species Thorp & Rogers 2016 Species (Lynceus Laevicaudata Thorp & Rogers 2016 brachyurus) Spinicaudata Genus Thorp & Rogers 2016 Williams 1972, Thorp & Rogers Isopoda Genus 2016 Holsinger 1972, Thorp & Rogers Amphipoda Genus 2016 Gammaridae: Gammarus Species Holsinger 1972 Crustacea monotypic genera: Apocorophium lacustre, Echinogammarus ischnus, Synurella dentata Species (Taphromysis Mysida Thorp & Rogers 2016 louisianae) Crocker & Barr 1968; Jezerinac 1993, 1995; Jezerinac & Thoma 1984; Taylor 2000; Thoma et al. Cambaridae Species 2005; Thoma & Stocker 2009; Crandall & De Grave 2017; Glon et al. 2018 Species (Palaemon Pennak 1989, Palaemonidae kadiakensis) Thorp & Rogers 2016 1 Ohio EPA Macroinvertebrate Taxonomic Level December 2019 Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Informal grouping of the Arachnida Hydrachnidia Smith 2001 water mites Genus Morse et al.
    [Show full text]
  • The Diptera of Lancashire and Cheshire: Craneflies and Winter Gnats
    The Diptera of Lancashire and Cheshire: Craneflies and Winter Gnats by Phil Brighton 32, Wadeson Way, Croft, Warrington WA3 7JS [email protected] Version 1.1 26 November 2017 1 Summary This document provides a new checklist for the craneflies and winter gnats (Tipuloidea, Ptychopteridae and Trichoceridae) to extend the lists of the diptera of Lancashire and Cheshire first published by Kidd and Bindle in 1959. Overall statistics on recording activity are given by decade and hectad. Checklists are presented for each of the three Watsonian vice-counties 58, 59, and 60 detailing for each species the number of records, year of earliest and most recent record, and the number of hectads with records. A combined checklist showing distribution by the three vice-counties is also included, covering a total of 264 species, amounting to 75% of the current British checklist. Introduction This report is the third in a series to update and extend the partial checklist of the diptera of Lancashire and Cheshire published in 1959 by Leonard Kidd and Alan Brindle1. There were two previous updates, in 19642 and 19713. The previous reports in this series cover the soldierflies and allies4 and the Sepsidae5, the latter family not having been covered in Ref 1. The reader is referred to the first two reports for the background and rationale of these checklists, as well as the history of diptera recording and available data sources. The description of methodology is also kept to a minimum in the present report: only significant differences from the previous publications will be outlined.
    [Show full text]
  • Table of Contents 2
    Southwest Association of Freshwater Invertebrate Taxonomists (SAFIT) List of Freshwater Macroinvertebrate Taxa from California and Adjacent States including Standard Taxonomic Effort Levels 1 March 2011 Austin Brady Richards and D. Christopher Rogers Table of Contents 2 1.0 Introduction 4 1.1 Acknowledgments 5 2.0 Standard Taxonomic Effort 5 2.1 Rules for Developing a Standard Taxonomic Effort Document 5 2.2 Changes from the Previous Version 6 2.3 The SAFIT Standard Taxonomic List 6 3.0 Methods and Materials 7 3.1 Habitat information 7 3.2 Geographic Scope 7 3.3 Abbreviations used in the STE List 8 3.4 Life Stage Terminology 8 4.0 Rare, Threatened and Endangered Species 8 5.0 Literature Cited 9 Appendix I. The SAFIT Standard Taxonomic Effort List 10 Phylum Silicea 11 Phylum Cnidaria 12 Phylum Platyhelminthes 14 Phylum Nemertea 15 Phylum Nemata 16 Phylum Nematomorpha 17 Phylum Entoprocta 18 Phylum Ectoprocta 19 Phylum Mollusca 20 Phylum Annelida 32 Class Hirudinea Class Branchiobdella Class Polychaeta Class Oligochaeta Phylum Arthropoda Subphylum Chelicerata, Subclass Acari 35 Subphylum Crustacea 47 Subphylum Hexapoda Class Collembola 69 Class Insecta Order Ephemeroptera 71 Order Odonata 95 Order Plecoptera 112 Order Hemiptera 126 Order Megaloptera 139 Order Neuroptera 141 Order Trichoptera 143 Order Lepidoptera 165 2 Order Coleoptera 167 Order Diptera 219 3 1.0 Introduction The Southwest Association of Freshwater Invertebrate Taxonomists (SAFIT) is charged through its charter to develop standardized levels for the taxonomic identification of aquatic macroinvertebrates in support of bioassessment. This document defines the standard levels of taxonomic effort (STE) for bioassessment data compatible with the Surface Water Ambient Monitoring Program (SWAMP) bioassessment protocols (Ode, 2007) or similar procedures.
    [Show full text]