Distribution of Rickettsioses in Oceania: Past Patterns and Implications for the Future
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Ohio Department of Health, Bureau of Infectious Diseases Disease Name Class A, Requires Immediate Phone Call to Local Health
Ohio Department of Health, Bureau of Infectious Diseases Reporting specifics for select diseases reportable by ELR Class A, requires immediate phone Susceptibilities specimen type Reportable test name (can change if Disease Name other specifics+ call to local health required* specifics~ state/federal case definition or department reporting requirements change) Culture independent diagnostic tests' (CIDT), like BioFire panel or BD MAX, E. histolytica Stain specimen = stool, bile results should be sent as E. histolytica DNA fluid, duodenal fluid, 260373001^DETECTED^SCT with E. histolytica Antigen Amebiasis (Entamoeba histolytica) No No tissue large intestine, disease/organism-specific DNA LOINC E. histolytica Antibody tissue small intestine codes OR a generic CIDT-LOINC code E. histolytica IgM with organism-specific DNA SNOMED E. histolytica IgG codes E. histolytica Total Antibody Ova and Parasite Anthrax Antibody Anthrax Antigen Anthrax EITB Acute Anthrax EITB Convalescent Anthrax Yes No Culture ELISA PCR Stain/microscopy Stain/spore ID Eastern Equine Encephalitis virus Antibody Eastern Equine Encephalitis virus IgG Antibody Eastern Equine Encephalitis virus IgM Arboviral neuroinvasive and non- Eastern Equine Encephalitis virus RNA neuroinvasive disease: Eastern equine California serogroup virus Antibody encephalitis virus disease; LaCrosse Equivocal results are accepted for all California serogroup virus IgG Antibody virus disease (other California arborviral diseases; California serogroup virus IgM Antibody specimen = blood, serum, serogroup -
Expansion of Tick-Borne Rickettsioses in the World
microorganisms Review Expansion of Tick-Borne Rickettsioses in the World Mariusz Piotrowski * and Anna Rymaszewska Institute of Biology, University of Szczecin, 70-453 Szczecin, Poland; [email protected] * Correspondence: [email protected] Received: 24 September 2020; Accepted: 25 November 2020; Published: 30 November 2020 Abstract: Tick-borne rickettsioses are caused by obligate intracellular bacteria belonging to the spotted fever group of the genus Rickettsia. These infections are among the oldest known diseases transmitted by vectors. In the last three decades there has been a rapid increase in the recognition of this disease complex. This unusual expansion of information was mainly caused by the development of molecular diagnostic techniques that have facilitated the identification of new and previously recognized rickettsiae. A lot of currently known bacteria of the genus Rickettsia have been considered nonpathogenic for years, and moreover, many new species have been identified with unknown pathogenicity. The genus Rickettsia is distributed all over the world. Many Rickettsia species are present on several continents. The geographical distribution of rickettsiae is related to their vectors. New cases of rickettsioses and new locations, where the presence of these bacteria is recognized, are still being identified. The variety and rapid evolution of the distribution and density of ticks and diseases which they transmit shows us the scale of the problem. This review article presents a comparison of the current understanding of the geographic distribution of pathogenic Rickettsia species to that of the beginning of the century. Keywords: Tick-borne rickettsioses; Tick-borne diseases; Rickettsiales 1. Introduction Tick-borne rickettsioses are caused by obligate intracellular Gram-negative bacteria belonging to the spotted fever group (SFG) of the genus Rickettsia. -
Update on Australian Rickettsial Infections
Update on Australian Rickettsial Infections Stephen Graves Founder & Medical Director Australian Rickettsial Reference Laboratory Geelong, Victoria & Newcastle NSW. Director of Microbiology Pathology North – Hunter NSW Health Pathology Newcastle. NSW Conjoint Professor, University of Newcastle, NSW What are rickettsiae? • Bacteria • Rod-shaped (0.4 x 1.5µm) • Gram negative • Obligate intracellular growth • Energy parasite of host cell • Invertebrate vertebrate Vertical transmission through life stages • Egg invertebrate Horizontal transmission via • Larva invertebrate bite/faeces (larva “chigger”, nymph, adult ♀) • Nymph • Adult (♀♂) Classification of Rickettsiae (phylum) α-proteobacteria (genus) 1. Rickettsia – Spotted Fever Group Typhus Group 2. Orientia – Scrub Typhus 3. Ehrlichia (not in Australia?) 4. Anaplasma (veterinary only in Australia?) 5. Rickettsiella (? Koalas) NB: Coxiella burnetii (Q fever) is a γ-proteobacterium NOT a true rickettsia despite being tick-transmitted (not covered in this presentation) 1 Rickettsiae from Australian Patients Rickettsia Vertebrate Invertebrate (human disease) Host Host A. Spotted Fever Group Rickettsia i. Rickettsia australis Native rats Ticks (Ixodes holocyclus, (Queensland Tick Typhus) Bandicoots I. tasmani) ii. R. honei Native reptiles (blue-tongue Tick (Bothriocroton (Flinders Island Spotted Fever) lizard & snakes) hydrosauri) iii.R. honei sub sp. Unknown Tick (Haemophysalis marmionii novaeguineae) (Australian Spotted Fever) iv.R. gravesii Macropods Tick (Amblyomma (? Human pathogen) (kangaroo, wallabies) triguttatum) Feral pigs (WA) v. R. felis cats/dogs Flea (cat flea typhus) (Ctenocephalides felis) All these rickettsiae grown in pure culture Rickettsiae in Australian patients (cont.) Rickettsia Vertebrate Invertebrate Host Host B. Typhus Group Rickettsia R. typhi Rodents (rats, mice) Fleas (murine typhus) (Ctenocephalides felis) (R. prowazekii) (humans)* (human body louse) ╪ (epidemic typhus) (Brill’s disease) C. -
The Rickettsial Outer-Membrane Protein a and B Genes of Rickettsia
International Journal of Systematic and Evolutionary Microbiology (2000), 50, 1775–1779 Printed in Great Britain The rickettsial outer-membrane protein A and B NOTE genes of Rickettsia australis, the most divergent rickettsia of the spotted fever group John Stenos1,2 and David H. Walker1 Author for correspondence: John Stenos. Tel: j61 3 5226 7552. Fax: j61 3 5226 7940. e-mail: JOHNS!BarwonHealth.org.au 1 Department of Pathology, The genes for rickettsial outer-membrane protein A (rOmpA), a distinguishing University of Texas Medical feature of spotted fever group (SFG) rickettsiae, and rOmpB, a genus-specific Branch at Galveston, Galveston, TX 77550, USA protein, were identified and sequenced in Rickettsia australis. The amino acid sequences of domains I, III and IV of the R. australis rOmpA share close 2 The Australian Rickettsial Reference Laboratory, The homology with those of rOmpA of other SFG rickettsiae, but the repeat region Douglas Hocking Research (domain II) is dramatically different from that of other known SFG rOmpA. Institute, Geelong R. australis rOmpB is more similar to rOmpB of other SFG rickettsiae than to Hospital, Geelong, Victoria 3220, Australia that of typhus group rickettsiae. Keywords: Rickettsia australis, spotted fever group rickettsiae, rOmpA, rOmpB The genus Rickettsia contains 21 named species and domain (Fournier et al., 1998). Complete rOmpA the unnamed AB bacterium (Beati & Raoult, 1993; sequences have been reported only for Rickettsia Beati et al., 1993, 1997; Fournier et al., 1998; Kelly et rickettsii and Rickettsia conorii (Anderson et al., 1990; al., 1996; Roux & Raoult, 1995; Roux et al., 1997; Crocquet-Valdes et al., 1994). -
Using Core Genome Alignments to Assign Bacterial Species 2
bioRxiv preprint doi: https://doi.org/10.1101/328021; this version posted May 22, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 Using Core Genome Alignments to Assign Bacterial Species 2 3 Matthew Chunga,b, James B. Munroa, Julie C. Dunning Hotoppa,b,c,# 4 a Institute for Genome Sciences, University of Maryland Baltimore, Baltimore, MD 21201, USA 5 b Department of Microbiology and Immunology, University of Maryland Baltimore, Baltimore, MD 6 21201, USA 7 c Greenebaum Comprehensive Cancer Center, University of Maryland Baltimore, Baltimore, MD 21201, 8 USA 9 10 Running Title: Core Genome Alignments to Assign Bacterial Species 11 12 #Address correspondence to Julie C. Dunning Hotopp, [email protected]. 13 14 Word count Abstract: 371 words 15 Word count Text: 4,833 words 16 1 bioRxiv preprint doi: https://doi.org/10.1101/328021; this version posted May 22, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 17 ABSTRACT 18 With the exponential increase in the number of bacterial taxa with genome sequence data, a new 19 standardized method is needed to assign bacterial species designations using genomic data that is 20 consistent with the classically-obtained taxonomy. -
1 Supplementary Material a Major Clade of Prokaryotes with Ancient
Supplementary Material A major clade of prokaryotes with ancient adaptations to life on land Fabia U. Battistuzzi and S. Blair Hedges Data assembly and phylogenetic analyses Protein data set: Amino acid sequences of 25 protein-coding genes (“proteins”) were concatenated in an alignment of 18,586 amino acid sites and 283 species. These proteins included: 15 ribosomal proteins (RPL1, 2, 3, 5, 6, 11, 13, 16; RPS2, 3, 4, 5, 7, 9, 11), four genes (RNA polymerase alpha, beta, and gamma subunits, Transcription antitermination factor NusG) from the functional category of Transcription, three proteins (Elongation factor G, Elongation factor Tu, Translation initiation factor IF2) of the Translation, Ribosomal Structure and Biogenesis functional category, one protein (DNA polymerase III, beta subunit) of the DNA Replication, Recombination and repair category, one protein (Preprotein translocase SecY) of the Cell Motility and Secretion category, and one protein (O-sialoglycoprotein endopeptidase) of the Posttranslational Modification, Protein Turnover, Chaperones category, as annotated in the Cluster of Orthologous Groups (COG) (Tatusov et al. 2001). After removal of multiple strains of the same species, GBlocks 0.91b (Castresana 2000) was applied to each protein in the concatenation to delete poorly aligned sites (i.e., sites with gaps in more than 50% of the species and conserved in less than 50% of the species) with the following parameters: minimum number of sequences for a conserved position: 110, minimum number of sequences for a flank position: 110, maximum number of contiguous non-conserved positions: 32000, allowed gap positions: with half. The signal-to-noise ratio was determined by altering the “minimum length of a block” parameter. -
Appendix a Bacteria
Appendix A Complete list of 594 pathogens identified in canines categorized by the following taxonomical groups: bacteria, ectoparasites, fungi, helminths, protozoa, rickettsia and viruses. Pathogens categorized as zoonotic/sapronotic/anthroponotic have been bolded; sapronoses are specifically denoted by a ❖. If the dog is involved in transmission, maintenance or detection of the pathogen it has been further underlined. Of these, if the pathogen is reported in dogs in Canada (Tier 1) it has been denoted by an *. If the pathogen is reported in Canada but canine-specific reports are lacking (Tier 2) it is marked with a C (see also Appendix C). Finally, if the pathogen has the potential to occur in Canada (Tier 3) it is marked by a D (see also Appendix D). Bacteria Brachyspira canis Enterococcus casseliflavus Acholeplasma laidlawii Brachyspira intermedia Enterococcus faecalis C Acinetobacter baumannii Brachyspira pilosicoli C Enterococcus faecium* Actinobacillus Brachyspira pulli Enterococcus gallinarum C C Brevibacterium spp. Enterococcus hirae actinomycetemcomitans D Actinobacillus lignieresii Brucella abortus Enterococcus malodoratus Actinomyces bovis Brucella canis* Enterococcus spp.* Actinomyces bowdenii Brucella suis Erysipelothrix rhusiopathiae C Actinomyces canis Burkholderia mallei Erysipelothrix tonsillarum Actinomyces catuli Burkholderia pseudomallei❖ serovar 7 Actinomyces coleocanis Campylobacter coli* Escherichia coli (EHEC, EPEC, Actinomyces hordeovulneris Campylobacter gracilis AIEC, UPEC, NTEC, Actinomyces hyovaginalis Campylobacter -
The Host-Pathogen Relationship in Rickettsia: Epidemiological Analysis of Rmsf in Ohio and a Comparative Molecular Analysis of Four Vir Genes
THE HOST-PATHOGEN RELATIONSHIP IN RICKETTSIA: EPIDEMIOLOGICAL ANALYSIS OF RMSF IN OHIO AND A COMPARATIVE MOLECULAR ANALYSIS OF FOUR VIR GENES DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Jennifer R. Carmichael, B.S. ***** The Ohio State University 2008 Dissertation Committee: Approved by Paul A. Fuerst, Advisor Gustavo Leone _________________________________ Arthur Burghes Advisor Graduate Program in Molecular Genetics Glen Needham ABSTRACT Members of the vector-borne bacterial genus Rickettsia represent an emerging infectious disease threat and have continually been implicated in epidemics worldwide. It is of vital importance to understand the geographical distribution of disease and rickettsial-infected arthropods vectors. In addition, understanding the dynamics of the relationship between rickettsiae and their arthropod hosts will help aid in identifying important factors for virulence. Dermacentor variabilis dog ticks are the main vector in the eastern United States for Rickettsia rickettsii, the etiological agent of Rocky Mountain spotted fever. The frequency of rickettsial-infected ticks and their geographical location in Ohio over the last twenty years was analyzed. The frequency of rickettsial species was found to remain relatively constant (about 20%), but the incidence of R. rickettsii has increased from 6 to 16%. Also, the geographic distribution of rickettsial-positive ticks has expanded, corresponding to a rise of RMSF in these new areas. Type IV secretion system genes, like the vir group, are important for pathogenicity in many pathogens, but have not been analyzed in Rickettsia. Four vir genes, virB8, virB11, virB4, and virD4 were analyzed in Rickettsia amblyommii infected Amblyomma americanum Lone Star ticks from across the Northeast United States. -
Rocky Mountain Spotted Fever
23.03.2013 CHYPRE «Emerging Rickettsioses» © by author ESCMID Online Lecture Library Didier Raoult Marseille - France [email protected] www.mediterranee-infection.com Gram negative bacterium Strictly intracellular Transmitted by arthropods: ticks, fleas, lice,© mites by author ESCMIDMosquitoes? Online Lecture Library U R 2 Louse borne disease - typhus Tick borne : the big killer - RMSF Other: less severe Flea borne - Murine typhus (Maxcy 1925 and Mooser 1921 ) Mite borne diseases - Scrub typhus (tsutsugamushi disease) Rickettsial pox (Huebner 1946© ) by author OtherESCMID rickettsia: non Online pathogenic Lecture Library Any Gram negative intracellular bacteria= Rickettsiales U R 3 NEW RICKETTSIAL DISEASES Many new diseases comparable to Arboviruses New clinical features no rash but adenopathy (R. slovaca, R. raoultii ) no rash, no inoculation eschar (R. helvetica ) others? Several species involved in a same area R. conorii and R. africae - Africa R. conorii, R. mongolotimonae© by author- France R. conorii, R. aeschlimannii - Spain, North Africa R. typhi and R. felis - USA ESCMID R. honei and R.Online australis - Australia Lecture Library R. rickettsii and R. parkeri - USA R. conorii and R. helvetica, R. slovaca - Switzerland U R 4 SITUATION DURING THE XXTH CENTURY One tick borne rickettsiosis per geographical area R. rickettsii agent of RMSF in the USA – other found in ticks: non pathogenic rickettsia (such as Coxiella burnetii or Legionella pneumophila) R. conorii alone in Europe© byand author Africa ESCMID -
Final Contaminant Candidate List 3 Microbes: Screening to PCCL
Final Contaminant Candidate List 3 Microbes: Screening to the PCCL Office of Water (4607M) EPA 815-R-09-0005 August 2009 www.epa.gov/safewater EPA-OGWDW Final CCL 3 Microbes: EPA 815-R-09-0005 Screening to the PCCL August 2009 Contents Abbreviations and Acronyms ......................................................................................................... 2 1.0 Background and Scope ....................................................................................................... 3 2.0 Recommendations for Screening a Universe of Drinking Water Contaminants to Produce a PCCL.............................................................................................................................. 3 3.0 Definition of Screening Criteria and Rationale for Their Application............................... 5 3.1 Application of Screening Criteria to the Microbial CCL Universe ..........................................8 4.0 Additional Screening Criteria Considered.......................................................................... 9 4.1 Organism Covered by Existing Regulations.............................................................................9 4.1.1 Organisms Covered by Fecal Indicator Monitoring ..............................................................................9 4.1.2 Organisms Covered by Treatment Technique .....................................................................................10 5.0 Data Sources Used for Screening the Microbial CCL 3 Universe ................................... 11 6.0 -
Rickettsiales and Rickettsial Diseases in Australia
Rickettsiales and rickettsial diseases in Australia Leonard Heinz Izzard Bachelor of Applied Science (Honours) This thesis is presented for the degree of Doctor of Philosophy of Murdoch University 2010 Declaration I declare that this thesis is my own account of my research and contains as its main content work which has not previously been submitted for a degree at any tertiary institution. …………………………. Leonard Heinz Izzard i Abstract Currently, there are 12 known Rickettsiales species in Australia. However research into the diversity and range of these agents in Australia is still far from complete. A sero-epidemiological study was undertaken around the city of Launceston in Tasmania, Australia to determine the level of exposure to spotted fever group (SFG) rickettsia among the local cat and dog population. The study showed that over 50% of the dogs and cats tested were positive for SFG rickettsiae antibodies. However, no correlation was observed between the animals’ health and seropositivity at the time of testing. Ixodes tasmani ticks collected from Tasmanian devils in Tasmania were tested for the presence of SFG and typhus group (TG) rickettsiae using a specific real time PCR (qPCR), and 55% were found to be positive. The gltA, rompA, rompB and sca4 genes were then sequenced. Using the current criteria this new rickettsia qualified as a Candidatus species, and was named Candidatus Rickettsia tasmanensis, after the location from which it was first detected. Soft ticks of the species Argas dewae were collected from bat roosting boxes north of Melbourne. Of the ten ticks collected, seven (70%) were positive for SFG rickettsiae using the qPCR mentioned above. -
Syndromic Classification of Rickettsioses
International Journal of Infectious Diseases 28 (2014) 126–139 Contents lists available at ScienceDirect International Journal of Infectious Diseases jou rnal homepage: www.elsevier.com/locate/ijid Review Syndromic classification of rickettsioses: an approach for clinical practice ´ a ´ b a b, Alvaro A. Faccini-Martı´nez , Lara Garcı´a-Alvarez , Marylin Hidalgo , Jose´ A. Oteo * a Microbiology Department, Faculty of Sciences, Pontificia Universidad Javeriana, Bogota´, Colombia b Infectious Diseases Department, Center of Rickettsioses and Vector-borne Diseases, Hospital San Pedro-CIBIR, Logron˜o, Spain A R T I C L E I N F O S U M M A R Y Article history: Rickettsioses share common clinical manifestations, such as fever, malaise, exanthema, the presence or Received 28 February 2014 absence of an inoculation eschar, and lymphadenopathy. Some of these manifestations can be suggestive Received in revised form 23 April 2014 of certain species of Rickettsia infection. Nevertheless none of these manifestations are pathognomonic, Accepted 24 May 2014 and direct diagnostic methods to confirm the involved species are always required. A syndrome is a set of Corresponding Editor: Eskild Petersen, signs and symptoms that characterizes a disease with many etiologies or causes. This situation is Aarhus, Denmark applicable to rickettsioses, where different species can cause similar clinical presentations. We propose a syndromic classification for these diseases: exanthematic rickettsiosis syndrome with a low probability Keywords: of inoculation eschar and rickettsiosis syndrome with a probability of inoculation eschar and their Rickettsioses variants. In doing so, we take into account the clinical manifestations, the geographic origin, and the Syndrome possible vector involved, in order to provide a guide for physicians of the most probable etiological agent.