Framework for the Development Of

Standards for Pathology Informatics

in Australia (SPIA)

Reporting Terminology and Codes Microbiology

(v3.0)

Superseding and incorporating the Australian Pathology Units and Terminology Standards and Guidelines (APUTS)

ISBN: Pending

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Apart from any use as permitted under the Copyright Act 1968 or as set out above, all other rights are reserved. Requests and inquiries concerning reproduction and rights should be addressed to RCPA, 207 Albion St, Surry Hills, NSW 2010, Australia.

This material contains content from LOINC® (http://loinc.org). The LOINC table, LOINC codes, LOINC panels and forms file, LOINC linguistic variants file, LOINC/RSNA Radiology Playbook, and LOINC/IEEE Medical Device Code Mapping Table are copyright © 1995-2016, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/terms-of-use.”

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This product includes all or a portion of the UCUM table, UCUM codes, and UCUM definitions or is derived from it, subject to a license from Regenstrief Institute, Inc. and The UCUM Organization. Your use of the UCUM table, UCUM codes, UCUM definitions also is subject to this license, a copy of which is available at http://unitsofmeasure.org. The current complete UCUM table, UCUM Specification are available for download at http://unitsofmeasure.org. The UCUM table and UCUM codes are copyright © 1995-2009, Regenstrief Institute, Inc. and the Unified Codes for Units of Measures (UCUM) Organization. All rights reserved.

First published: February, 2013, 1st Edition (version 1.0)

Standards for Pathology Informatics in Australia (SPIA) Previously known as the Australian Pathology Units and Terminology Standards and Guidelines (APUTS) Microbiology Report Information Model Terminology

Copyright © 2013- 2017 RCPA. All rights reserved. This material contains information which is protected by copyright. You may download, display, print and reproduce any material for your personal, non-commercial use or use within your organisation subject to the following terms and conditions: 1. The material may not be copied, reproduced, communicated or displayed, in whole or in part, for profit or commercial gain. 2. Any copy, reproduction or communication must include this RCPA copyright notice in full. 3. No changes may be made to the wording of the Standards and Guidelines, terminology reference sets and information models including commentary, tables or diagrams. Excerpts from the Standards and Guidelines, terminology reference sets and information models may be used. References and acknowledgments must be maintained in any reproduction or copy in full or part of the material. Apart from any use as permitted under the Copyright Act 1968 or as set out above, all other rights are reserved. Requests and inquiries concerning reproduction and rights should be addressed to RCPA, 207 Albion St, Surry Hills, NSW 2010, Australia. Copyright © 1995-2017 Regenstrief Institute, Inc. and the LOINC Committee. All rights reserved. This material contains content from LOINC® (http://loinc.org). The LOINC table, LOINC codes, LOINC panels and forms file, LOINC linguistic variants file, LOINC/RSNA Radiology Playbook, and LOINC/IEEE Medical Device Code Mapping Table are copyright © 1995-2015, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/terms-of-use. Copyright © 1999-2017 Regenstrief Institute, Inc. and the UCUM Organization. All rights reserved. This product includes all or a portion of the UCUM table, UCUM codes, and UCUM definitions or is derived from it, subject to a license from Regenstrief Institute, Inc. and The UCUM Organization. Your use of the UCUM table, UCUM codes, UCUM definitions also is subject to this license, a copy of which is available at http://unitsofmeasure.org. The current complete UCUM table, UCUM Specification are available for download at http://unitsofmeasure.org. The UCUM table and UCUM codes are copyright © 1995-2009, Regenstrief Institute, Inc. and the Unified Codes for Units of Measures (UCUM) Organization. All rights reserved. TRIM Document #: D156352

Document History: Version Reason for Change Author Date 1.0 Initial Terminology for Microbiology: Organisms mapped to SNOMED CT, published by the RCPA Pathology Michael Legg / Dr 12-Feb-13 Units and Terminology Standardisation Project. Christiaan Swanepoel 2.0 Changed the name of this spreadsheet from "PUTS Microbiology Urine Microbiology LOINC subset " to Donna Moore 06-Jun-14 "APUTS Microbiology terminology reference set ". Added Document Revision History worksheet. The following are the updates to the 'Terminology for Urine MCS' worksheet: Corrected "15 Flucytosine" should have been "5 Flucytosine" on the Terminology for Urine MCS worksheet.

Updated 'Yeast' to now say 'Yeasts'. Removed "RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology : Urine Microbiology Report v1" title from Urine MCS LOINC subset.

Removed columns that were used during reviewing the SNOMED codes.

Added Terminlogy for Salmonella worksheet, compiled by PITUS-14 WG5. 2.1 Add licence information. Donna Moore 2-May-16 3.0 Added 'LongName' column for LOINC LongName. Some LongName data were placed in the Method Field, Donna Moore 16-Jan-17 mainly for the Antibiotics, this has now been rectified. Added 'Ver' and 'History' columns. Standards for Pathology Informatics in Australia (SPIA) Microbiology reporting terminology reference set Urine Microbiology Report Information Model Terminology RCPA Preferred term LOINC Component Property Timing System Scale Method LongName Ver History Specimen Collection Method 19159-3 Urinalysis specimen collectionPrid method Pt Urine Nom * Urinalysis specimen collection method 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Dipstick/Chemistry Glucose 25428-4 Glucose PrThr Pt Urine Ord Test strip Glucose [Presence] in Urine by Test strip 3.0 3.0 - Changed Property field from Acnc 1.0 - Added by PUTS project Bilirubin 5770-3 Bilirubin PrThr Pt Urine Ord Test strip Bilirubin.total [Presence] in Urine by Test strip 3.0 3.0 - Changed Property field from Acnc 1.0 - Added by PUTS project Ketones 2514-8 Ketones PrThr Pt Urine Ord Test strip Ketones [Presence] in Urine by Test strip 3.0 3.0 - Changed Property field from Acnc 1.0 - Added by PUTS project Specific Gravity 5811-5 Specific gravity Rden Pt Urine Qn Test strip Specific gravity of Urine by Test strip 1.0 pH 5803-2 pH LsCnc Pt Urine Qn Test strip pH of Urine by Test strip 1.0 Protein 20454-5 Protein PrThr Pt Urine Ord Test strip Protein [Presence] in Urine by Test strip 3.0 3.0 - Changed Property field from Acnc 1.0 - Added by PUTS project Urobilinogen 5818-0 Urobilinogen PrThr Pt Urine Ord Test strip Urobilinogen [Presence] in Urine by Test strip 3.0 3.0 - Changed Property field from Acnc 1.0 - Added by PUTS project Nitrites 5802-4 Nitrite PrThr Pt Urine Ord Test strip Nitrite [Presence] in Urine by Test strip 3.0 3.0 - Changed Property field from Acnc 1.0 - Added by PUTS project Haemoglobin 5794-3 Hemoglobin PrThr Pt Urine Ord Test strip Hemoglobin [Presence] in Urine by Test strip 3.0 3.0 - Changed Property field from Acnc 1.0 - Added by PUTS project Leucocyte Esterase 5799-2 Leukocyte esterase PrThr Pt Urine Ord Test strip Leukocyte esterase [Presence] in Urine by 3.0 3.0 - Changed Property field from Acnc Test strip 1.0 - Added by PUTS project Microscopy Cells White blood cell count 30405-5 Leukocytes NCnc Pt Urine Qn Leukocytes [#/volume] in Urine 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Red blood cell count 30391-7 Erythrocytes NCnc Pt Urine Qn Erythrocytes [#/volume] in Urine 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Red blood cell morphology 53974-2 Erythrocyte morphology Imp Pt Urine sed Nar Microscopy.light Erythrocyte morphology [Interpretation] in 1.0 Urine sediment by Light microscopy Narrative

Epithelial cells 30383-4 Epithelial cells NCnc Pt Urine Qn Epithelial cells [#/volume] in Urine 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Microorganisms Bacteria 50221-1 Bacteria PrThr Pt Urine Ord Automated Bacteria [Presence] in Urine by Automated 3.0 3.0 - Changed Property field from ACnc 1.0 - Added by PUTS project Parasites 33017-5 Parasites Naric Pt Urine sed Qn Microscopy.light.LPF Parasites [#/area] in Urine sediment by 1.0 Microscopy low power field Yeasts 32356-8 Yeast PrThr Pt Urine sed Ord Microscopy.light Yeast [Presence] in Urine sediment by Light 3.0 3.0 - Changed Property field from Acnc microscopy 2.0 - Changed preferred term from 'Yeast' 1.0 - Added by PUTS project Fungi 20457-8 Fungi.filamentous PrThr Pt Urine sed Ord Microscopy.light Fungi.filamentous [Presence] in Urine 3.0 3.0 - Changed Property field from ACnc sediment by Light microscopy 1.0 - Added by PUTS project Casts Casts present 24124-0 Casts PrThr Pt Urine sed Ord Microscopy.light Casts [Presence] in Urine sediment by Light 3.0 3.0 - Changed Property field from ACnc microscopy 1.0 - Added by PUTS project Casts number 9842-6 Casts Naric Pt Urine sed Qn Microscopy.light.LPF Casts [#/area] in Urine sediment by 1.0 Microscopy low power field Casts type 58436-7 Casts Type Pt Urine sed Nom Microscopy.light Casts [Type] in Urine sediment by Light 1.0 microscopy

Copyright © 2013- 2017 RCPA. All rights reserved. Copyright © 1995-2017 Regenstrief Institute, Inc. and the LOINC Committee. Copyright © 1999-2017 Regenstrief Institute, Inc. and the UCUM Organization. All rights reserved. Page 2 of 8 Standards for Pathology Informatics in Australia (SPIA) Microbiology reporting terminology reference set Urine Microbiology Report Information Model Terminology RCPA Preferred term LOINC Component Property Timing System Scale Method LongName Ver History Crystals Crystals present 49755-2 Crystals PrThr Pt Urine sed Ord Microscopy.light Crystals [Presence] in Urine sediment by Light 3.0 3.0 - Changed Property field from ACnc microscopy 1.0 - Added by PUTS project Crystals number 38459-4 Crystals Naric Pt Urine sed Qn Microscopy.light.HPF Crystals [#/area] in Urine sediment by 1.0 Microscopy high power field Crystals type 5782-8 Crystals Prid Pt Urine sed Nom Microscopy.light Crystals [type] in Urine sediment by Light 1.0 microscopy Other 58442-5 Other elements Prid Pt Urine sed Nom Microscopy.light Other elements [Identifier] in Urine sediment by Light microscopy Spermatozoa 8248-7 Spermatozoa PrThr Pt Urine sed Ord Microscopy.light Spermatozoa [Presence] in Urine sediment by 3.0 3.0 - Changed Property field from ACnc Light microscopy 1.0 - Added by PUTS project Antibacterial activity Antibacterial activity 30910-4 Antimicrobials PrThr Pt Urine Ord Antimicrobials [Presence] in Urine 3.0 3.0 - Changed Property field from ACnc 1.0 - Added by PUTS project Culture The same LOINC should be used if multiple organisms are cultured. The HL7 Sub ID (OBX-4) field can be used to distiguish organisms from each other and group relevant colony counts and susceptiblity testing. Culture result/Organism 630-4 Bacteria identified Prid Pt Urine Nom Culture 1.0 Colony count 19090-0 Colony count NCnc Pt Urine Qn Colony count [#/volume] in Urine 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Antimicrobial Susceptibility The LOINC terms listed below are an extract from a large selection of antimicrobial substances available. All are methodless and have the Inscale addition property to the of OrdQn.methodless The LOINC terms there are versions with the following methods: Agar diffusion, MIC, MLC (Minimum lethal concentration), SBT (Serum bactericidal titre)and Gradient strip (E-Test or gradient strip) Antibacterials Amikacin 18860-7 Amikacin Susc Pt Isolate OrdQn Amikacin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Amoxycillin 18861-5 Amoxicillin Susc Pt Isolate OrdQn Amoxicillin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Ampicillin 18864-9 Ampicillin Susc Pt Isolate OrdQn Ampicillin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Augmentin 18862-3 Amoxicillin+Clavulanate Susc Pt Isolate OrdQn Amoxicillin+Clavulanate [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Azithromycin 18866-4 Azithromycin Susc Pt Isolate OrdQn Azithromycin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Aztreonam 18868-0 Aztreonam Susc Pt Isolate OrdQn Aztreonam [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Cefepime 18879-7 Cefepime Susc Pt Isolate OrdQn Cefepime [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Cefotaxime 18886-2 Cefotaxime Susc Pt Isolate OrdQn Cefotaxime [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Cefpirome 18889-6 Cefpirome Susc Pt Isolate OrdQn Cefpirome [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Ceftazidime 18893-8 Ceftazidime Susc Pt Isolate OrdQn Ceftazidime [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Ceftriaxone 18895-3 Ceftriaxone Susc Pt Isolate OrdQn Ceftriaxone [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Cephalexin 18897-9 Cephalexin Susc Pt Isolate OrdQn Cephalexin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Cephalothin 18900-1 Cephalothin Susc Pt Isolate OrdQn Cephalothin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project

Copyright © 2013- 2017 RCPA. All rights reserved. Copyright © 1995-2017 Regenstrief Institute, Inc. and the LOINC Committee. Copyright © 1999-2017 Regenstrief Institute, Inc. and the UCUM Organization. All rights reserved. Page 3 of 8 Standards for Pathology Informatics in Australia (SPIA) Microbiology reporting terminology reference set Urine Microbiology Report Information Model Terminology RCPA Preferred term LOINC Component Property Timing System Scale Method LongName Ver History Cephazolin 18878-9 Cefazolin Susc Pt Isolate OrdQn Cefazolin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Chloramphenicol 18903-5 Chloramphenicol Susc Pt Isolate OrdQn Chloramphenicol [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field Ciprofloxacin 18906-8 Ciprofloxacin Susc Pt Isolate OrdQn Ciprofloxacin [Susceptibility] 3.0 3.01.0 - MovedAdded bydata PUTS in Method project field to LongName field 1.0 - Added by PUTS project Clarithromycin 18907-6 Clarithromycin Susc Pt Isolate OrdQn Clarithromycin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Daptomycin 35789-7 Daptomycin Susc Pt Isolate OrdQn Daptomycin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Doripenem 60535-2 Doripenem Susc Pt Isolate OrdQn Doripenem [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Ertapenem 35802-8 Ertapenem Susc Pt Isolate OrdQn Ertapenem [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Erythromycin 18919-1 Erythromycin Susc Pt Isolate OrdQn Erythromycin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Flucloxacillin/ 18923-3 Floxacillin Susc Pt Isolate OrdQn Floxacillin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Flucloxacillin/Dicloxacillin 18916-7 Dicloxacillin Susc Pt Isolate OrdQn Dicloxacillin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Fosfomycin 25596-8 Fosfomycin Susc Pt Isolate OrdQn Fosfomycin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Fusidic acid 18927-4 Fusidate Susc Pt Isolate OrdQn Fusidate [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Gentamicin 18928-2 Gentamicin Susc Pt Isolate OrdQn Gentamicin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Gentamicin (high level) 18929-0 Gentamicin.high potency Susc Pt Isolate OrdQn Gentamicin.high potency [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field lmipenem 18932-4 Imipenem Susc Pt Isolate OrdQn Imipenem [Susceptibility] 3.0 3.01.0 - MovedAdded bydata PUTS in Method project field to LongName field 1.0 - Added by PUTS project Linezolid 29258-1 Linezolid Susc Pt Isolate OrdQn Linezolid [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Meropenem 18943-1 Meropenem Susc Pt Isolate OrdQn Meropenem [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Methicillin 18945-6 Methicillin Susc Pt Isolate OrdQn Methicillin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Metronidazole 18946-4 Metronidazole Susc Pt Isolate OrdQn Metronidazole [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Moxifloxacin 31039-1 Moxifloxacin Susc Pt Isolate OrdQn Moxifloxacin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Mupirocin 20389-3 Mupirocin Susc Pt Isolate OrdQn Mupirocin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Nitrofurantoin 18955-5 Nitrofurantoin Susc Pt Isolate OrdQn Nitrofurantoin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Norfloxacin 18956-3 Norfloxacin Susc Pt Isolate OrdQn Norfloxacin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Penicillin 18964-7 Penicillin Susc Pt Isolate OrdQn Penicillin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Piperacillin 18969-6 Piperacillin Susc Pt Isolate OrdQn Piperacillin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Polymyxin B (Colistin) 18972-0 Polymyxin B Susc Pt Isolate OrdQn Polymyxin B [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Quinupristin/Dalfopristin 23640-6 Quinupristin+Dalfopristin Susc Pt Isolate OrdQn Quinupristin+Dalfopristin [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field (Synercid) 1.0 - Added by PUTS project

Amphotericin B 18863-1 Amphotericin B Susc Pt Isolate OrdQn Amphotericin B [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project 5 Flucytosine 18855-7 5-Fluorocytosine Susc Pt Isolate OrdQn Fluconazole [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 2.0 - Changed preferred term from '15 Flucytosine' to '5 Flucytosine' 1.0 - Added by PUTS project Fluconazole 18924-1 Fluconazole Susc Pt Isolate OrdQn Fluconazole [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project Itraconazole 32603-3 Itraconazole Susc Pt Isolate OrdQn Itraconazole [Susceptibility] 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project

ESBL 6984-9 Beta lactamase.extended spectrumSusc Pt Isolate OrdQn Beta lactamase.extended spectrum 3.0 3.0 - Moved data in Method field to LongName field [Susceptibility] 1.0 - Added by PUTS project Metallo Beta lactamase XXXXX-X Metallo Beta lactamase Susc Pt Isolate OrdQn 1.0 Other 54217-5 Public health notifiable conditionPrid Pt XXX Nom Public health notifiable condition 3.0 3.0 - Moved data in Method field to LongName field 1.0 - Added by PUTS project 11323-3 General health Find Pt ^Patient Nom Reported General health - Reported 1.0

Glucose Bilirubin Ketones Specific Gravity pH Chemistry Protein Urobilinogen Nitrites Haemoglobin Leucocyte Esterases

Cells Microorganisms Microscopy Casts Crystals Urine MCS Other elements

30910-4 Antibacterial Activity LOINC

630-4 Culture LOINC

None Consistent with UTI Probable contamination Growth unlikely to be significant Comment Please submit a repeat specimen for testing if clinically indicated Catheter comments Sterile pyuria

Notification to infection control and public health departments

SPIA Urine Microbiology Information model v1.0.mmap - 12/02/2013 - Mindjet Suprapubic aspirate 258576008 | Suprapubic aspirate sample | SNOMED CT

Indwelling 446775007 | C ollection of urine via indwelling urinary catheter | SNOMED CT Catheter

In-out First catch C ollection method 19159-3 Mid-stream urine sample 258574006 | Mid-streamurine sample | Specimen Type LOINC SNOMED CT

Specimen Urine specimen obtained from urinary collection bag 446306009 | Urine specimen obtained from urinary collection bag | SNOMED CT

Urine specimen obtained by clean catch procedure 1 2 2 8 8 0 0 0 4 | U r i n e s p e c i m e n o b t a i n e d b y c l e a n c a t c h p r o c e d u r e | SNOMED CT

A ppearance C olour Macro C larity Time

25428-4 Glucose LOINC

5770-3 Bilirubin LOINC

2514-8 Ketones LOINC

5811-5 Specif ic Gravity LOINC

5803-2 pH LOINC

Che m istry 20454-5 Protein LOINC

5818-0 Urobilinogen LOINC

5802-4 Nitrites LOINC

5794-3 Haemoglobin LOINC

5799-2 Leucocyte Esterases LOINC

Ranges go here White blood cell count 30405-5 LOINC

Ranges go here C ount 30391-7 LOINC

Red blood cells Cells 53974-2 Morphology LOINC

Ranges go here Epithelial cells 30383-4 LOINC

A bs e nt Present Bacteria 50221-1 Many LOINC Nil

A bs e nt Present Parasites 33017-5 Microorganisms Many LOINC Nil

A bs e nt Present Yeasts 32356-8 Many LOINC Nil

A bs e nt Present Casts [Presence] 24124-0 Many LOINC Nil

Ranges go here Casts [#] 9842-6 LOINC

Bacterial Broad Epithelial Microscopy Casts RBC Fatty Granular Urine MCS Casts [Type] Coarse 58436-7 LOINC Fine Haemoglobin Hyaline WBC P seudo Mixed

A bs e nt Crystals [Presence] Present 24124-0 LOINC Many

38459-4 Crystals [#] LOINC

Paracetamol A mmonium urate Bilirubin Crystals Calcium Carbonate Calcium carbonate Crystals [ID] C alcium hydrogen phosphate dihydrate 5782-8 LOINC Calcium oxalate C alcium phosphate C alcium sulphate C holesterol Drug

A morphous sediment A rtefacts Type Fat 58442-5 LOINC Mucous Starch Other elements

A bs e nt Spermatazoa 8248-7 Present LOINC

A bs e nt Antibacterial Activity 30910-4 Present LOINC

No growth 264868006 | No growth | SNOMED CT

167569004 | Urine culture - mixed growth | SNOMED CT Mixed growth Skin Enteric N o s ignific ant growth

Klebsiella sp. 131269001 | Klebsiella species | SNOMED CT

Bacteria ESBL Klebsiella pneumoniae 409801009 | ESBL Klebsiella pneumoniae | Identification SNOMED CT

V irus Fungi

G rowth of >1 0 ^8 org/L 1 0 ^7 to 1 0 ^8 organis m/L of mixed Range or number C olony C ount growth of 3 organis ms 19090-0 Culture 630-4 LOINC >10^8 organisms/L LOINC

O rganis m 1 Resistant 30714006 | Resistant | SNOMED CT Significant growth

e.g. Ampicillin Susceptible 131196009 | Susceptible | 18864-9 SNOMED CT LOINC

A ntibiotics MIC value Numeric value Susceptibility

CDS Method E UCAST CLSI Released/suppressed None O rganis m 2 O rganis m 3 O rganis m 4

None C onsistent with UTI Probable contamination Growth unlikely to be significant Comment P leas e s ubmit a repeat s pec imen for testing if clinically indicated C atheter comments Sterile pyuria

Notification to infection control and public health departments

SPIA Urine Microbiology Information model v1.0.mmap - 12/02/2013 - Mindjet Standards for Pathology Informatics in Australia (SPIA) Microbiology reporting terminology reference set Salmonella Infection Report Information Model Terminology RCPA Preferred term LOINC Component Property Timing System Scale Method Long Name Ver History Request Information Clinical information 55752-0 Clinical information Find Pt ^Patient Nar Clinical information 2.0 2.0 - Added by PITUS-14 project Specimen Information Laboratory Accession number 57723-9 Unique bar code number ID Pt Current sample Nom Unique bar code number of Current sample 2.0 2.0 - Added by PITUS-14 project Culture Identification Name of pathogen Refer to PUTS Microbiology Subset of Organisms mapped to Snomed CT Method of identification XXXXX-X 2.0 2.0 - Added by PITUS-14 project Subtyping Salmonella sp serovar 65756-9 Salmonella sp serovar Type Pt Isolate Nom Salmonella sp serovar [Type] in Isolate 2.0 2.0 - Added by PITUS-14 project Salmonella sp phage type 73672-8 Salmonella sp phage type Type Pt Isolate Nom Salmonella sp phage type in Isolate 2.0 2.0 - Added by PITUS-14 project MLVA type XXXXX-X 2.0 2.0 - Added by PITUS-14 project MLST type Code to be progressed by International harmonisation effort SNP type Code to be progressed by International harmonisation effort Antibiotic Susceptibility The LOINC terms listed below are an extract from a large selection of antimicrobial substances available. Suggest to flag antibiotics as released or unreleased. First line or released antibiotics susceptibility results must to be reported to the reference laboratory. The suppressed second line antibiotics susceptibility results are optional. All are methodless and have the scale property of OrdQn. The OrdQn scale property allow results to be reported as as resistant, intermediate, susceptible or as the mm diameter of the inhibition zone/ MIC numeric value. In addition to the methodless LOINC terms there are versions with the following methods: Agar diffusion, MIC, MLC (Minimum lethal concentration), SBT (Serum bactericidal titre)and Gradient strip (E-Test or gradient strip)

Antibacterials Amikacin 18860-7 Amikacin Susc Pt Isolate OrdQn Amikacin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Amoxycillin 18861-5 Amoxicillin Susc Pt Isolate OrdQn Amoxicillin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Ampicillin 18864-9 Ampicillin Susc Pt Isolate OrdQn Ampicillin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Augmentin 18862-3 Amoxicillin+Clavulanate Susc Pt Isolate OrdQn Amoxicillin+Clavulanate [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Azithromycin 18866-4 Azithromycin Susc Pt Isolate OrdQn Azithromycin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Aztreonam 18868-0 Aztreonam Susc Pt Isolate OrdQn Aztreonam [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Cefepime 18879-7 Cefepime Susc Pt Isolate OrdQn Cefepime [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Cefotaxime 18886-2 Cefotaxime Susc Pt Isolate OrdQn Cefotaxime [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Cefpirome 18889-6 Cefpirome Susc Pt Isolate OrdQn Cefpirome [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Ceftazidime 18893-8 Ceftazidime Susc Pt Isolate OrdQn Ceftazidime [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Ceftriaxone 18895-3 Ceftriaxone Susc Pt Isolate OrdQn Ceftriaxone [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Cephalexin 18897-9 Cephalexin Susc Pt Isolate OrdQn Cephalexin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Cephalothin 18900-1 Cephalothin Susc Pt Isolate OrdQn Cephalothin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Cephazolin 18878-9 Cefazolin Susc Pt Isolate OrdQn Cefazolin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Chloramphenicol 18903-5 Chloramphenicol Susc Pt Isolate OrdQn Chloramphenicol [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Ciprofloxacin 18906-8 Ciprofloxacin Susc Pt Isolate OrdQn Ciprofloxacin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Clarithromycin 18907-6 Clarithromycin Susc Pt Isolate OrdQn Clarithromycin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Daptomycin 35789-7 Daptomycin Susc Pt Isolate OrdQn Daptomycin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Doripenem 60535-2 Doripenem Susc Pt Isolate OrdQn Doripenem [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Ertapenem 35802-8 Ertapenem Susc Pt Isolate OrdQn Ertapenem [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Erythromycin 18919-1 Erythromycin Susc Pt Isolate OrdQn Erythromycin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Flucloxacillin/ 18923-3 Floxacillin Susc Pt Isolate OrdQn Floxacillin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Flucloxacillin/Dicloxacillin 18916-7 Dicloxacillin Susc Pt Isolate OrdQn Dicloxacillin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Fosfomycin 25596-8 Fosfomycin Susc Pt Isolate OrdQn Fosfomycin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Fusidic acid 18927-4 Fusidate Susc Pt Isolate OrdQn Fusidate [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Gentamicin 18928-2 Gentamicin Susc Pt Isolate OrdQn Gentamicin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Gentamicin (high level) 18929-0 Gentamicin.high potency Susc Pt Isolate OrdQn Gentamicin.high potency [Susceptibility] 2.0 2.0 - Added by PITUS-14 project lmipenem 18932-4 Imipenem Susc Pt Isolate OrdQn Imipenem [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Linezolid 29258-1 Linezolid Susc Pt Isolate OrdQn Linezolid [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Meropenem 18943-1 Meropenem Susc Pt Isolate OrdQn Meropenem [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Methicillin 18945-6 Methicillin Susc Pt Isolate OrdQn Methicillin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Metronidazole 18946-4 Metronidazole Susc Pt Isolate OrdQn Metronidazole [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Moxifloxacin 31039-1 Moxifloxacin Susc Pt Isolate OrdQn Moxifloxacin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project

Copyright © 2013- 2017 RCPA. All rights reserved. Copyright © 1995-2017 Regenstrief Institute, Inc. and the LOINC Committee. Copyright © 1999-2017 Regenstrief Institute, Inc. and the UCUM Organization. All rights reserved. Page 6 of 8 Standards for Pathology Informatics in Australia (SPIA) Microbiology reporting terminology reference set Salmonella Infection Report Information Model Terminology RCPA Preferred term LOINC Component Property Timing System Scale Method Long Name Ver History Mupirocin 20389-3 Mupirocin Susc Pt Isolate OrdQn Mupirocin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Nitrofurantoin 18955-5 Nitrofurantoin Susc Pt Isolate OrdQn Nitrofurantoin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Norfloxacin 18956-3 Norfloxacin Susc Pt Isolate OrdQn Norfloxacin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Penicillin 18964-7 Penicillin Susc Pt Isolate OrdQn Penicillin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Piperacillin 18969-6 Piperacillin Susc Pt Isolate OrdQn Piperacillin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Polymyxin B (Colistin) 18972-0 Polymyxin B Susc Pt Isolate OrdQn Polymyxin B [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Quinupristin/Dalfopristin (Synercid) 23640-6 Quinupristin+Dalfopristin Susc Pt Isolate OrdQn Quinupristin+Dalfopristin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Rifampicin 18974-6 Rifampin Susc Pt Isolate OrdQn Rifampin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Streptomycin (high level) 18983-7 Streptomycin.high potency Susc Pt Isolate OrdQn Streptomycin.high potency [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Tazocin 18970-4 Piperacillin+Tazobactam Susc Pt Isolate OrdQn Piperacillin+Tazobactam [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Teicoplanin 18989-4 Teicoplanin Susc Pt Isolate OrdQn Teicoplanin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Tetracycline 18993-6 Tetracycline Susc Pt Isolate OrdQn Tetracycline [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Tigecycline 42357-4 Tigecycline Susc Pt Isolate OrdQn Tigecycline [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Timentin 18995-1 Ticarcillin+Clavulanate Susc Pt Isolate OrdQn Ticarcillin+Clavulanate [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Tobramycin 18996-9 Tobramycin Susc Pt Isolate OrdQn Tobramycin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Trimethoprim 18997-7 Trimethoprim Susc Pt Isolate OrdQn Trimethoprim [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Vancomycin 19000-9 Vancomycin Susc Pt Isolate OrdQn Vancomycin [Susceptibility] 2.0 2.0 - Added by PITUS-14 project Ancillary Immunochemistry Salmonella paratyphi AH Ab 21511-1 Salmonella paratyphi A H Ab Titr Pt Ser Qn Aggl Salmonella paratyphi A H Ab [Titer] in Serum by 2.0 2.0 - Added by PITUS-14 project Agglutination Salmonella paratyphi AO Ab 33470-6 Salmonella paratyphi A O Ab Titr Pt Ser Qn Aggl Salmonella paratyphi A O Ab [Titer] in Serum by 2.0 2.0 - Added by PITUS-14 project Agglutination Salmonella paratyphi BH Ab 21513-7 Salmonella paratyphi B H Ab Titr Pt Ser Qn Aggl Salmonella paratyphi B H Ab [Titer] in Serum by 2.0 2.0 - Added by PITUS-14 project AgglutinationSalmonella paratyphi B H Ab [Titer] in Serum Salmonella paratyphi BO Ab 27938-0 Salmonella paratyphi B O Ab Titr Pt Ser Qn Aggl Salmonellaby Agglutination paratyphi B O Ab [Titer] in Serum by 2.0 2.0 - Added by PITUS-14 project Agglutination Salmonella typhi H Ab 34371-5 Salmonella typhi H Ab Titr Pt Ser Qn Aggl Salmonella typhi H Ab [Titer] in Serum by Agglutination 2.0 2.0 - Added by PITUS-14 project

Salmonella typhi O Ab 34372-3 Salmonella typhi O Ab Titr Pt Ser Qn Aggl Salmonella typhi O Ab [Titer] in Serum by 2.0 2.0 - Added by PITUS-14 project AgglutinationSalmonella typhi O Ab [Titer] in Serum by Agglutination Interpretative comment 8251-1 Service comment Imp Pt XXX Nom Service comment 2.0 2.0 - Added by PITUS-14 project Note: Multiple comment LOINC codes available in the range 8251-1 (Service comment)…..8263-6 (Service comment 20). Molecular Salmonella sp DNA 49612-5 Salmonella sp DNA ACnc Pt XXX Ord Probe.amp.tar Salmonella sp DNA [Presence] in Unspecified specimen by 2.0 2.0 - Added by PITUS-14 project Probe and target amplification method Salmonella typhi DNA 70021-1 Salmonella typhi DNA Threshold Pt Bld Ord Probe.amp.tar Salmonella typhi DNA [Presence] in Blood by Probe and 2.0 2.0 - Added by PITUS-14 project target amplification method Interpretative comment 8251-1 Service comment Imp Pt XXX Nom Service comment 2.0 2.0 - Added by PITUS-14 project Note: Multiple comment LOINC codes available in the range 8251-1 (Service comment)…..8263-6 (Service comment 20). Comment Comment 22638-1 Path report.comments Imp Pt Specimen Nar Pathology report comments Narrative 2.0 2.0 - Added by PITUS-14 project Report type Preliminary 73703-1 Path report.preliminary diagnosis Imp Pt Specimen Nom Pathology report preliminary diagnosis [interpretation] in 2.0 2.0 - Added by PITUS-14 project Specimen Final 34574-4 Path report.final diagnosis Imp Pt Specimen Nom Pathology report final diagnosis 2.0 2.0 - Added by PITUS-14 project Notifying Infection / Public Health departments Testing laboratory Name of laboratory 68994-3 Performing laboratory name ID Pt Facility Nom Performing laboratory name 2.0 2.0 - Added by PITUS-14 project Laboratory address 68989-3 Performing laboratory Addr Pt Facility Nom Performing laboratory [Address] 2.0 2.0 - Added by PITUS-14 project Laboratory telephone XXXXX-X 2.0 2.0 - Added by PITUS-14 project Type of report 2.0 2.0 - Added by PITUS-14 project

33470-6 Salmonella paratyphi AO Ab LOINC Name

Address of the practice 21513-7 Telephone Salmonella paratyphi BH Ab LOINC Requesting doctor Fax Antibodies 27938-0 Provider number Salmonella paratyphi BO Ab LOINC Immunochemistry Name Sex 34371-5 Salmonella typhi H Ab LOINC Date of Birth Street number and street 34372-3 Suburb Salmonella typhi O Ab LOINC Residential address Patient demographics Request information Ancillary findings (if requested) Postcode State 8251-1 Interpretive comment LOINC if patient admitted Medical Record Number 49612-5 Main symptoms Salmonella sp DNA LOINC Immunosuppression 70021-1 Hospital admission 55752-0 Salmonella typhi DNA LOINC Travel history LOINC Clinical information Molecular free text Other 8251-1 Interpretive comment LOINC

Result 8251-1 Other Test result type Interpretive comment LOINC

22638-1 57723-9 Comment LOINC LOINC Laboratory Accession number

258528007 | Rectal swab | 73703-1 SNOMED CT Rectal Preliminary LOINC Report type 257261003 | Swab | Specimen information 34574-4 SNOMED CT Swab Specimen type Final LOINC

119339001 | Stool specimen | SNOMED CT Stool 68994-3 Name of laboratory LOINC Date of collection Salmonella reporting Date of receipt Information Model 68989-3 Address LOINC 264868006 | No growth | SNOMED CT No growth XXXXX-X Telephone Laboratory contact details LOINC XXXXX-X LOINC Method of identification Fax Testing laboratory information Email Report from Primary Pathology 372342007 | Salmonella species | Website SNOMED CT e.g. Salmonella species provider to Jurisdictional Reference laboratory 73703-1 Preliminary 5595000 | Salmonella Typhi | LOINC Name of the pathogen SNOMED CT e.g. Salmonella Typhi Type of the report 34574-4 Note: For more SNOMED CT codes for Salmonella organisms refer Final LOINC to Microbiology Organisms subset mapped to Snomed CT Notification by Primary Pathology provider Identification Date of notification 65756-9 LOINC Salmonella sp serovar Specify genus level Name of pathogen

73672-8 Culture Specify first line or released antibiotics susceptibility results LOINC Salmonella sp phage type Antibiotic susceptibility Suppressed second line antibiotics susceptibility results (optional) Subtyping information Growth XXXXX-X LOINC MLVA type 68994-3 Name of laboratory LOINC MLST type SNP type 68989-3 Address LOINC None

30714006 | Resistant | Resistant XXXXX-X SNOMED CT Telephone Laboratory contact details LOINC

18906-8 Fax e.g. Ciprofloxacin Antibiotic Susceptibility 131196009 | Susceptible | Susceptible LOINC Antibiotics [1...*] Testing laboratory information SNOMED CT Report from Jurisdictional Email Reference laboratory to Website Jurisdictional Public Healt h For the complete list of antibiotics, refer to the Terminology for Salmonella 73703-1 registry tab of the PUTS Microbiology terminology reference set. Preliminary LOINC

Type of the report 34574-4 Final LOINC

Notification by Jurisdictional Reference laboratory Date of notification

Specify species and subspecies level Name of pathogen

Specify first line or released antibiotics susceptibility results Antibiotic susceptibility Suppressed second line antibiotics susceptibility results (as required)

Jurisdictional Public Health regis t ry

Refer to Salmonella Case Definition http://www.health.gov.au/internet/main/publishing.nsf/Content/cda-phlncd-salmonella.htm National Public Health registry

SPIA Salmonella report Information model v1.0.mmap - 16/05/2014 - Mindjet Clinical encounter Pathology testing and reporting Public health registry

Patient with Epidemiologist symptoms Public Health of food Alert poisoning Primary pathology provider Yes

Clinician Negative Positive Report Pathologist Salmonella Report (Final) (Preliminary) 1 clustered

Salmonella Public Health Request Yes No Identified Notification 1

Clinical Laboratory Request for Information Information characterisation System 1 System Jurisdictional Public Health Registry Laboratory Information System 2 Public Health Notification 2 Does it fulfil Salmonella CDNA case No confirmed & Yes definition characterised ? Negative Pathologist Positive Report (Final) 2 Report (Final) National Public Health Registry Jurisdictional reference laboratory Information and terminology for Salmonella reporting

Minimum information Minimum information Minimum information required by Jurisdictional required for Public health required for Public health Terminology Reference Laboratory Notification 1 Notification 2 standard from from from Primary pathology Primary pathology Jurisdictional reference provider provider laboratory Requesting doctor

Name - Yes Yes Yes

Address of the practice - Yes Yes Yes

Telephone - Yes Yes Yes

Fax - Yes Yes Yes

Medicare provider number - Yes Yes Yes

Patient demographics

Name - Yes Yes Yes

Sex - Yes Yes Yes

Date of birth - Yes Yes Yes

Residential address Yes - Yes Yes (Including state and postcode)

Medical Record Number - If admitted If admitted If admitted Information and terminology for Salmonella reporting

Clinical information

Main symptoms - If available If available If available

Immunosuppression - If available If available If available

Hospital admission - If available If available If available

Travel history - If available If available If available

Specimen attributes

Laboratory accession number - Yes Yes Yes

Type (e.g. stool, rectal swab, etc.) SNOMED-CT-AU Yes Yes Yes

Date of collection - Yes Yes Yes

Date of receipt - - - Yes Information and terminology for Salmonella reporting

Results

Species and subspecies Name of the pathogen SNOMED-CT-AU Genus level Genus level levels

Method of identification LOINC Yes Yes Yes

Subtyping information LOINC e.g. serovar, phage type, MLVA type, - - Yes

MLST type, SNP type etc.

Antibiotic susceptibility results LOINC If available If available If available

Date of the result to a clinician - Yes Yes Yes

Testing laboratory

Name LOINC Yes Yes Yes

Contact details (address, telephone, fax, LOINC Yes Yes Yes email, website) Type of the report (e.g. preliminary, LOINC Yes Yes Yes final, supplementary)

Date of notification to a registry - Yes Yes Yes Standards for Pathology Informatics in Australia (SPIA) Previously known as the Australian Pathology Units and Terminology Standards and Guidelines (APUTS) Microbiology Serology Molecular Pathology Reporting Terminology reference set Copyright © 2013- 2017 RCPA. All rights reserved. This material contains information which is protected by copyright. You may download, display, print and reproduce any material for your personal, non-commercial use or use within your organisation subject to the following terms and conditions: 1. The material may not be copied, reproduced, communicated or displayed, in whole or in part, for profit or commercial gain. 2. Any copy, reproduction or communication must include this RCPA copyright notice in full. 3. No changes may be made to the wording of the Standards and Guidelines, terminology reference sets and information models including commentary, tables or diagrams. Excerpts from the Standards and Guidelines, terminology reference sets and information models may be used. References and acknowledgments must be maintained in any reproduction or copy in full or part of the material. Apart from any use as permitted under the Copyright Act 1968 or as set out above, all other rights are reserved. Requests and inquiries concerning reproduction and rights should be addressed to RCPA, 207 Albion St, Surry Hills, NSW 2010, Australia. Copyright © 1995-2017 Regenstrief Institute, Inc. and the LOINC Committee. All rights reserved. This material contains content from LOINC® (http://loinc.org). The LOINC table, LOINC codes, LOINC panels and forms file, LOINC linguistic variants file, LOINC/RSNA Radiology Playbook, and LOINC/IEEE Medical Device Code Mapping Table are copyright © 1995-2015, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/terms-of-use.

Copyright © 1999-2017 Regenstrief Institute, Inc. and the UCUM Organization. All rights reserved. This product includes all or a portion of the UCUM table, UCUM codes, and UCUM definitions or is derived from it, subject to a license from Regenstrief Institute, Inc. and The UCUM Organization. Your use of the UCUM table, UCUM codes, UCUM definitions also is subject to this license, a copy of which is available at http://unitsofmeasure.org. The current complete UCUM table, UCUM Specification are available for download at http://unitsofmeasure.org. The UCUM table and UCUM codes are copyright © 1995-2009, Regenstrief Institute, Inc. and the Unified Codes for Units of Measures (UCUM) Organization. All rights reserved. TRIM Document #: D156350

Document History: Version Reason for Change Author Date Initial Terminology for Reporting Pathology for Microbiology Serology and Molecular, published by the Michael Legg / Dr Christiaan 1.0 12-Feb-13 RCPA Pathology Units and Terminology Standardisation Project. Swanepoel 2.0 Added Document Revision History worksheet. Donna Moore 06-Jun-14 Changed filename from "PUTS Microbiology Serology Molecular pathology LOINC and UNITS terminology reference se t" to "APUTS Microbiology Serology Molecular Pathology terminology reference set ". Updated Terminology for Reporting Path worksheet for the following: Removed heading, and placed it on this worksheet. Removed columns that were used during reviewing the Loinc codes.

Added Length column. This is the number of characters for the "Preferred term" column. Also added LOINC Long Name columns to the view. Changed "PUTS Unit" to "Unit". Corrected spelling mistakes in the preferred name column. Changed 'Toxoplasmosis' to 'Toxoplasma gondii'. 2.1 After public feedback and approval by PITUS steering committee the following changes were made: Donna Moore 24-Oct-14 - changed from 'Epstein Barr virus virus capsid Ab IgM' to 'Epstein Barr virus capsid Ab IgM'. - changed 'Methicillin resistant Staphylococcus DNA' to 'Methicillin resistant Staphylococcus aureus DNA - changed 'Influenza B Total' to 'Influenza B Total Ab' - changed 'Influenza B Total Complement Fixation' to 'Influenza B Total Complement Fixation Ab' - changed 'Influenza B Total HAI' to 'Influenza B Total HAI Ab' - changed 'Influenza B Total Methodless' to 'Influenza B Total Methodless Ab' - changed 'Q fever Total' to 'Q fever Total Ab' (both lines for Q fever have been changed) - changed from 'Leptospira interrogans serovar Tarassovi Ab' to 'Leptospira interrogans serovar Tarrasovi Ab'.

2.2 Add licence information. Donna Moore 2-May-16

3.0 Added new tests, added synonyms and changed preferred names - for further details refer to the Donna Moore 10-Jan-17 Version and History columns in the 'Terminology Micro Sero Molecul' tab.

Includes changes after Public comment. Standards for Pathology Informatics in Australia (SPIA) Microbiology Serology Molecular Pathology reporting terminology reference set

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U Alphavirus RNA 14 Any No Unit 51663-3 Alphavirus RNA PrThr Pt XXX Ord Probe.am Alphavirus RNA [Presence] in Unspecified specimen by Probe and 3.0 3.0 - Changed preferred term from 'Alphavirus group'; changed LOINC property from 'ACnc' p.tar target amplification method 1.0 - Added by PUTS project

Arenavirus RNA 14 Any No Unit 41621-4 Arenavirus RNA PrThr Pt XXX Ord Probe.am Arenavirus RNA [Presence] in Unspecified specimen by Probe and 3.0 3.0 - Added by PITUS-16 Working group 3 p.tar target amplification method Aspergillus sp DNA 18 Any No Unit 49863-4 Aspergillus sp DNA PrThr Pt XXX Ord Probe.am Aspergillus sp DNA [Presence] in Unspecified specimen by Probe and 3.0 3.0 - Added by PITUS-16 Working group 3 p.tar target amplification method Bacillus anthracis DNA 22 Any No Unit 41623-0 Bacillus anthracis DNA PrThr Pt XXX Ord Probe.am Bacillus anthracis DNA [Presence] in Unspecified specimen by Probe 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar and target amplification method 1.0 - Added by PUTS project Bacillus anthracis DNA 22 Any No Unit 41622-2 Bacillus anthracis DNA Prid Pt XXX Nom Probe.am Bacillus anthracis DNA [Identifier] in Unspecified specimen by Probe 3.0 3.0 - Added by PITUS-16 Working group 3 p.tar & target amplification method Bacterial 16S rRNA 18 Any No Unit 66885-5 Bacterial 16S rRNA sequencing Prid Pt XXX Nom Bacterial 16S rRNA sequencing [Identifier] in Unspecified specimen 1.0

Barmah Forest virus IgG BFV IgG 23 Blood/Serum No Unit 31247-0 Barmah forest virus Ab.IgG PrThr Pt Ser Ord Barmah forest virus IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Barmah Forest virus IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Barmah Forest virus IgM BFV IgM 23 Blood/Serum No Unit 31248-8 Barmah forest virus Ab.IgM PrThr Pt Ser Ord Barmah forest virus IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Barmah Forest virus IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Barmah Forest virus RNA 23 Any No Unit 81688-4 Barmah forest virus RNA PrThr Pt Bld Ord Probe.am Barmah forest virus RNA [Presence] in Blood by Probe and target 3.0 3.0 - Added new LOINC code. p.tar amplification method 1.0 - Added by PUTS project Barmah Forest virus total Ab 28 Blood/Serum titre 81120-8 Barmah forest virus Ab Titr Pt Ser Qn Barmah forest virus Ab [Titer] in Serum 3.0 3.0 - Added new LOINC code. 1.0 - Added by PUTS project Bartonella henselae DNA 23 Any No Unit 33986-1 Bartonella henselae DNA PrThr Pt XXX Ord Probe.am Bartonella henselae DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project Bartonella quintana DNA 23 Any No Unit 57910-2 Bartonella quintana DNA PrThr Pt XXX Ord Probe.am Bartonella quintana DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project BK virus DNA For qualitative reporting 12 Any No Unit 47251-4 BK virus DNA PrThr Pt XXX Ord Probe.am BK virus DNA [Presence] in Unspecified specimen by Probe and target 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar amplification method 1.0 - Added by PUTS project BK virus DNA For quantitative reporting 12 Any IU/mL [IU]/mL 42587-6 BK virus DNA ACnc Pt XXX Qn Probe.am BK virus DNA [Units/volume] (viral load) in Unspecified specimen by 1.0 in international units/mL p.tar Probe and target amplification method

BK virus DNA For quantitative reporting 12 Any log {Log_copies}/mL 43201-3 BK virus DNA LnCnc Pt XXX Qn Probe.am BK virus DNA [Log #/volume] (viral load) in Unspecified specimen by 1.0 in log copies/mL copies/mL p.tar Probe and target amplification method

BK virus DNA For quantitative reporting 12 Any copies/mL {copies}/mL 48309-9 BK virus DNA NCnc Pt XXX Qn Probe.am BK virus DNA [#/volume] (viral load) in Unspecified specimen by 1.0 in copies/mL p.tar Probe and target amplification method Bordetella pertussis DNA 24 Any No Unit 23826-1 Bordetella pertussis DNA PrThr Pt XXX Ord Probe.am Bordetella pertussis DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project Bordetella pertussis IgA 24 Blood/Serum No Unit 29672-3 Bordetella pertussis Ab.IgA PrThr Pt Ser Ord Bordetella pertussis IgA Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Bordetella pertussis IgA Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Bordetella pertussis IgG For qualitative reporting 24 Blood/Serum No Unit 29674-9 Bordetella pertussis Ab.IgG PrThr Pt Ser Ord Bordetella pertussis IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Bordetella pertussis IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Bordetella pertussis IgG 24 Blood/Serum U/mL U/mL 9363-3 Bordetella pertussis Ab.IgG ACnc Pt Ser Qn Bordetella pertussis IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Bordetella pertussis IgG Ab' 1.0 - Added by PUTS project Bordetella pertussis IgM 24 Blood/Serum No Unit 29673-1 Bordetella pertussis Ab.IgM PrThr Pt Ser Ord Bordetella pertussis IgM Ab [Presence] in Serum 3.0 2.0 - Changed preferred term from 'Bordetella pertussis IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Bordetella pertussis toxin IgA 30 Blood/Serum IU/mL [IU]/mL 23830-3 Bordetella pertussis.toxin ACnc Pt Ser Qn Bordetella pertussis toxin IgA Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Bordetella pertussis toxin IgA Ab' Ab.IgA 1.0 - Added by PUTS project Bordetella pertussis toxin IgG 30 Blood/Serum IU/mL [IU]/mL 23831-1 Bordetella pertussis.toxin ACnc Pt Ser Qn Bordetella pertussis toxin IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Bordetella pertussis toxin IgG Ab' Ab.IgG 1.0 - Added by PUTS project Bordetella pertussis toxin IgM 30 Blood/Serum IU/mL [IU]/mL 23832-9 Bordetella pertussis.toxin ACnc Pt Ser Qn Bordetella pertussis toxin IgM Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Bordetella pertussis toxin IgM Ab' Ab.IgM 1.0 - Added by PUTS project Brucella Ab For use with agglutination 11 Blood/Serum titre 19053-8 Brucella sp Ab Titr Pt Ser Qn Aggl Brucella sp Ab [Titer] in Serum by Agglutination 1.0 assay Brucella Ab For use with complement 12 Blood/Serum titre 6325-5 Brucella abortus Ab Titr Pt Ser Qn Comp fix Brucella abortus Ab [Titer] in Serum by Complement fixation 1.0 fixation test

Brucella sp DNA 15 Any No Unit 41626-3 Brucella sp DNA PrThr Pt XXX Ord Probe.am Brucella sp DNA [Presence] in Unspecified specimen by Probe and 3.0 3.0 - Added by PITUS-16 Working group 3 p.tar target amplification method Brucella sp IgG 15 Blood/Serum No Unit 24396-4 Brucella sp Ab.IgG PrThr Pt Ser Ord Brucella sp IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Brucella IgG Ab'; changed LOINC property from 'ACnc' 1.0- Added by PUTS project Brucella sp IgM 15 Blood/Serum No Unit 24397-2 Brucella sp Ab.IgM PrThr Pt Ser Ord Brucella sp IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Brucella IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Burkholderia mallei Ab 22 Blood/Serum No Unit 22956-7 Burkholderia mallei Ab PrThr Pt Ser Ord Burkholderia mallei Ab [Presence] in Serum 3.0 3.0 - Added by PITUS-16 Working group 3 Burkholderia mallei DNA 23 Any No Unit 70853-7 Burkholderia mallei DNA PrThr Pt XXX Ord Probe.am Burkholderia mallei DNA [Presence] in Unspecified specimen by 3.0 3.0 - Added by PITUS-16 Working group 3 p.tar Probe and target amplification method Burkholderia pseudomallei IgG 29 Blood/Serum titre 23965-7 Burkholderia pseudomallei Titr Pt Ser Qn Burkholderia pseudomallei IgG Ab [Titer] in Serum 3.0 3.0 - Added by PITUS-16 Working group 3 Ab.IgG Burkholderia pseudomallei IgM 29 Blood/Serum titre 23973-1 Burkholderia pseudomallei Titr Pt Ser Qn Burkholderia pseudomallei IgM Ab [Titer] in Serum 3.0 3.0 - Added by PITUS-16 Working group 3 Ab.IgM Burkholderia pseudomallei DNA 29 Any No Unit 70852-9 Burkholderia pseudomallei DNA PrThr Pt XXX Ord Probe.am Burkholderia pseudomallei DNA [Presence] in Unspecified specimen 3.0 3.0 - Added by PITUS-16 Working group 3 p.tar by Probe and target amplification method Campylobacter jejuni DNA 24 Any No Unit 61368-7 Campylobacter jejuni DNA PrThr Pt XXX Ord Probe.am Campylobacter jejuni DNA [Presence] in Unspecified specimen by 3.0 3.0 - Added by PITUS-16 Working group 3 p.tar Probe and target amplification method Chikungunya virus RNA CHIKV RNA 21 Any No Unit 51664-1 Chikungunya virus RNA PrThr Pt XXX Ord Probe.am Chikungunya virus RNA [Presence] in Unspecified specimen by Probe 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar and target amplification method 1.0 - Added by PUTS project Chikungunya virus total Ab CHIKV Ab 26 Blood/Serum titre 43064-5 Chikungunya virus Ab Titr Pt Ser Qn Chikungunya virus Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Chikungunya virus Total Ab' 1.0 - Added by PUTS project Chlamydia sp IgA 16 Blood/Serum No Unit 29677-2 Chlamydia sp Ab.IgA PrThr Pt Ser Ord Chlamydia sp IgA Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydia sp IgA Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Chlamydia sp IgG 16 Blood/Serum No Unit 21185-4 Chlamydia sp Ab.IgG PrThr Pt Ser Ord Chlamydia sp IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydia sp IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U Chlamydia sp IgM 16 Blood/Serum No Unit 21186-2 Chlamydia sp Ab.IgM PrThr Pt Ser Ord Chlamydia sp IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydia sp IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Chlamydia sp total Ab 21 Blood/Serum No Unit 45012-2 Chlamydia sp Ab PrThr Pt Ser Ord Chlamydia sp Ab [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project Chlamydia trachomatis DNA 25 Any No Unit 21613-5 Chlamydia trachomatis DNA PrThr Pt XXX Ord Probe.am Chlamydia trachomatis DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project Chlamydia trachomatis IgA 25 Blood/Serum No Unit 45005-6 Chlamydia trachomatis Ab.IgA PrThr Pt Ser Ord Chlamydia trachomatis IgA Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydia trachomatis IgA Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Chlamydia trachomatis IgG 25 Blood/Serum No Unit 43848-1 Chlamydia trachomatis Ab.IgG PrThr Pt Ser Ord Chlamydia trachomatis IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydia trachomatis IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Chlamydia trachomatis IgM 25 Blood/Serum No Unit 41157-9 Chlamydia trachomatis Ab.IgM PrThr Pt Ser Ord Chlamydia trachomatis IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydia trachomatis IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Chlamydia trachomatis L2 DNA Lymphogranuloma 28 Any No Unit 47211-8 Chlamydia trachomatis L2 DNA PrThr Pt XXX Ord Probe.am Chlamydia trachomatis L2 DNA [Presence] in Unspecified specimen 3.0 3.0 - Changed LOINC property from 'ACnc' venerum p.tar by Probe and target amplification method 1.0 - Added by PUTS project Chlamydia trachomatis total Ab 30 Blood/Serum titre 22187-9 Chlamydia trachomatis Ab Titr Pt Ser Qn Chlamydia trachomatis Ab [Titer] in Serum 1.0 Chlamydia trachomatis total Ab For qualitative reporting 30 Blood/Serum No Unit 30204-2 Chlamydia trachomatis Ab PrThr Pt Ser Ord Chlamydia trachomatis Ab [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc' other than 1.0 - Added by PUTS project immunofluoresence methods Chlamydia trachomatis total Ab For qualitative reporting 31 Any No Unit 6355-2 Chlamydia trachomatis Ag PrThr Pt XXX Ord IF Chlamydia trachomatis Ag [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' with immunofluoresence Immunofluorescence 1.0 - Added by PUTS project methods

Chlamydophila pneumoniae DNA Chlamydia pneumoniae 28 Any No Unit 34645-2 Chlamydophila pneumoniae PrThr Pt XXX Ord Probe.am Chlamydophila pneumoniae DNA [Presence] in Unspecified specimen 3.0 3.0 - Added by PITUS-16 Working group 3 DNA DNA p.tar by Probe and target amplification method Chlamydophila pneumoniae IgA Chlamydia pneumoniae For qualitative reporting 28 Blood/Serum No Unit 44982-7 Chlamydophila pneumoniae PrThr Pt Ser Ord Chlamydophila pneumoniae IgA Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydophila pneumoniae IgA Ab'; changed LOINC property IgA Ab.IgA from 'ACnc' 1.0 - Added by PUTS project Chlamydophila pneumoniae IgA Chlamydia pneumoniae 28 Blood/Serum titre 22170-5 Chlamydophila pneumoniae Titr Pt Ser Qn Chlamydophila pneumoniae IgA Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydophila pneumoniae IgA Ab' IgA Ab.IgA 1.0 - Added by PUTS project Chlamydophila pneumoniae IgG Chlamydia pneumoniae For qualitative reporting 28 Blood/Serum No Unit 44981-9 Chlamydophila pneumoniae PrThr Pt Ser Ord Chlamydophila pneumoniae IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydophila pneumoniae IgG Ab'; changed LOINC property IgG Ab.IgG from 'ACnc' 1.0 - Added by PUTS project Chlamydophila pneumoniae IgG Chlamydia pneumoniae 28 Blood/Serum titre 22172-1 Chlamydophila pneumoniae Titr Pt Ser Qn Chlamydophila pneumoniae IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydophila pneumoniae IgG Ab' IgG Ab.IgG 1.0 - Added by PUTS project Chlamydophila pneumoniae IgM Chlamydia pneumoniae For qualitative reporting 28 Blood/Serum No Unit 24004-4 Chlamydophila pneumoniae PrThr Pt Ser Ord Chlamydophila pneumoniae IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from ' Chlamydophila pneumoniae IgM Ab'; changed LOINC property IgM Ab.IgM from 'ACnc' 1.0 - Added by PUTS project Chlamydophila pneumoniae IgM Chlamydia pneumoniae 28 Blood/Serum titre 22174-7 Chlamydophila pneumoniae Titr Pt Ser Qn Chlamydophila pneumoniae IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydophila pneumoniae IgM Ab' IgM Ab.IgM 1.0 - Added by PUTS project Chlamydophila pneumoniae total Ab Chlamydia pneumoniae 33 Blood/Serum titre 11254-0 Chlamydophila pneumoniae Ab Titr Pt Ser Qn Chlamydophila pneumoniae Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydophila pneumoniae Total Ab' total Ab 1.0 - Added by PUTS project Chlamydophila psittaci DNA Chlamydia psittaci DNA 26 Any No Unit 23001-1 Chlamydophila psittaci DNA PrThr Pt XXX Ord Probe.am Chlamydophila psittaci DNA [Presence] in Unspecified specimen by 3.0 3.0 - Added by PITUS-16 Working group 3 p.tar Probe and target amplification method Chlamydophila psittaci total Ab Chlamydia psittaci total 31 Blood/Serum titre 22176-2 Chlamydophila psittaci Ab Titr Pt Ser Qn Chlamydophila psittaci Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Chlamydophila psittaci Total Ab' Ab 1.0 - Added by PUTS project Clostridium botulinum toxin 27 Stool No Unit 11470-2 Clostridium botulinum toxin ACnc Pt Stool Qn Clostridium botulinum toxin [Units/volume] in Stool 3.0 3.0 - Added by PITUS-16 Working group 3 Clostridium botulinum toxin 27 Blood/Serum No Unit 20705-0 Clostridium botulinum toxin Prid Pt Ser Nom Animal Clostridium botulinum toxin [Identifier] in Serum by Animal 3.0 3.0 - Added by PITUS-16 Working group 3 inoculatio inoculation n Clostridium difficile DNA 25 Any No Unit 61367-9 Clostridium difficile DNA PrThr Pt XXX Ord Probe.am Clostridium difficile DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project Clostridium difficile glutamate 45 Stool No Unit 57901-1 Clostridium difficile glutamate PrThr Pt Stool Ord Clostridium difficile glutamate dehydrogenase [Presence] in Stool 3.0 3.0 - Changed LOINC property to 'ACnc' dehydrogenase dehydrogenase 1.0 - Added by PUTS project Clostridium difficile toxin A+B 31 Stool No Unit 34713-8 Clostridium difficile toxin A+B PrThr Pt Stool Ord Clostridium difficile toxin A+B [Presence] in Stool 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project Clostridium difficile toxin genes For molecular assay 40 Stool No Unit 54067-4 Clostridium difficile toxin genes PrThr Pt Stool Ord Probe.am Clostridium difficile toxin genes [Presence] in Stool by Probe and 3.0 3.0 - Changed LOINC property to 'ACnc' faeces p.tar target amplification method 1.0 - Added by PUTS project Cryptococcus Ag 15 Blood/Serum No Unit 31790-9 Cryptococcus sp Ag PrThr Pt Ser Ord Cryptococcus sp Ag [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project Cryptococcus Ag 16 Blood/Serum titre 40768-4 Cryptococcus sp Ag Titr Pt Ser Qn Cryptococcus sp Ag [Titer] in Serum 1.0 Cryptococcus Ag CSF 19 CSF No Unit 31788-3 Cryptococcus sp Ag PrThr Pt CSF Ord Cryptococcus sp Ag [Presence] in Cerebral spinal fluid 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project Cryptococcus Ag CSF 19 CSF titre 9819-4 Cryptococcus sp Ag Titr Pt CSF Qn LA Cryptococcus sp Ag [Titer] in Cerebral spinal fluid by Latex 1.0 agglutination Cryptococcus neoformans RNA 27 Any No unit 4995-7 Cryptococcus neoformans rRNA PrThr Pt XXX Ord Probe Cryptococcus neoformans rRNA [Presence] in Unspecified specimen 3.0 4.0 - Added by PITUS-16 Working group 3 by DNA probe Cryptococcus sp DNA 19 Any No unit 81649-6 Cryptococcus sp rDNA PrThr Pt XXX Ord Probe.am Cryptococcus sp rDNA [Presence] in Unspecified specimen by Probe 3.0 3.0 - Added new LOINC code. p.tar and target amplification meth 1.0 - Added by PUTS project Cryptosporidium sp DNA 22 Any No unit 60545-1 Cryptosporidium sp DNA PrThr Pt XXX Ord Probe.am Cryptosporidium sp DNA [Presence] in Unspecified specimen by 3.0 3.0 - Added by PITUS-16 Working group 3 p.tar Probe & target amplification method Cytomegalovirus DNA CMV DNA For qualitative reporting 19 Any No Unit 5000-5 Cytomegalovirus DNA PrThr Pt XXX Ord Probe.am Cytomegalovirus DNA [Presence] in Unspecified specimen by Probe 3.0 3.0 - Added synonym 'CMV DNA'; changed LOINC property from 'ACnc' p.tar and target amplification method 1.0 - Added by PUTS project Cytomegalovirus DNA CMV DNA For quantitative reporting 19 Any log {Log_copies}/mL 53763-9 Cytomegalovirus DNA LnCnc Pt XXX Qn Probe.am Cytomegalovirus DNA [Log #/volume] (viral load) in Unspecified 3.0 3.0 - Added synonym 'CMV DNA' in log copies/mL copies/mL p.tar specimen by Probe and target amplification method 1.0 - Added by PUTS project

Cytomegalovirus DNA CMV DNA For quantitative reporting 19 Any copies/mL {copies}/mL 33006-8 Cytomegalovirus DNA NCnc Pt XXX Qn Probe.am Cytomegalovirus DNA [#/volume] (viral load) in Unspecified specimen 3.0 3.0 - Added synonym 'CMV DNA' in copies/mL p.tar by Probe and target amplification method 1.0 - Added by PUTS project Cytomegalovirus IgG CMV IgG For qualitative reporting 20 Blood/Serum No Unit 22244-8 Cytomegalovirus Ab.IgG PrThr Pt Ser Ord Cytomegalovirus IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Cytomegalovirus IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Cytomegalovirus IgG CMV IgG 20 Blood/Serum U/mL U/mL 7852-7 Cytomegalovirus Ab.IgG ACnc Pt Ser Qn Cytomegalovirus IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Cytomegalovirus IgG Ab' 1.0 - Added by PUTS project Cytomegalovirus IgG avidity CMV IgG avidity 27 Blood/Serum % % 52984-2 Cytomegalovirus Ab.IgG avidity Ratio Pt Ser Qn IA Cytomegalovirus IgG Ab avidity [Ratio] in Serum by Immunoassay 3.0 3.0 - Changed preferred term from 'Cytomegalovirus Ab IgG avidity'; Changed Method field from EIA 1.0 - Added by PUTS project

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U Cytomegalovirus IgM CMV IgM For qualitative reporting 20 Blood/Serum No Unit 30325-5 Cytomegalovirus Ab.IgM PrThr Pt Ser Ord Cytomegalovirus IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Cytomegalovirus IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Cytomegalovirus IgM CMV IgM For quantitative reporting 19 Blood/Serum titre 22249-7 Cytomegalovirus Ab.IgM Titr Pt Ser Qn Cytomegalovirus IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Cytomegalovirus IgM Ab' in titres 1.0 - Added by PUTS project Cytomegalovirus IgM CMV IgM For quantitative reporting 19 Blood/Serum U/mL U/mL 7853-5 Cytomegalovirus Ab.IgM ACnc Pt Ser Qn Cytomegalovirus IgM Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Cytomegalovirus IgM Ab' in units/mL 1.0 - Added by PUTS project Cytomegalovirus total Ab CMV total Ab 24 Blood/Serum titre 22241-4 Cytomegalovirus Ab Titr Pt Ser Qn Cytomegalovirus Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Cytomegalovirus Total Ab' 1.0 - Added by PUTS project Dengue virus 1 RNA 18 Blood/Serum No Unit 60262-3 Dengue virus 1 RNA PrThr Pt Ser Ord Probe.am Dengue virus 1 RNA [Presence] in Serum by Probe and target 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar amplification method 1.0 - Added by PUTS project Dengue virus 2 RNA 18 Blood/Serum No Unit 60420-7 Dengue virus 2 RNA PrThr Pt Ser Ord Probe.am Dengue virus 2 RNA [Presence] in Serum by Probe and target 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar amplification method 1.0 - Added by PUTS project Dengue virus 3 RNA 18 Blood/Serum No Unit 60419-9 Dengue virus 3 RNA PrThr Pt Ser Ord Probe.am Dengue virus 3 RNA [Presence] in Serum by Probe and target 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar amplification method 1.0 - Added by PUTS project Dengue virus 4 RNA 18 Blood/Serum No Unit 60418-1 Dengue virus 4 RNA PrThr Pt Ser Ord Probe.am Dengue virus 4 RNA [Presence] in Serum by Probe and target 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar amplification method 1.0 - Added by PUTS project Dengue virus group RNA 22 Blood/Serum No Unit 7855-0 Dengue virus 1+2+3+4 RNA PrThr Pt Ser Ord Probe.am Dengue virus 1, 2, 3, 4 RNA [Presence] in Serum by Probe and target 3.0 3.0 - Changed LOINC property to 'ACnc'; Changed Component field from Dengue virus 1, 2, 3, 4 RNA p.tar amplification method 1.0 - Added by PUTS project

Dengue virus IgG 17 Blood/Serum No Unit 29676-4 Dengue virus Ab.IgG PrThr Pt Ser Ord Dengue virus IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Dengue virus IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Dengue virus IgG 17 Blood/Serum titre 6811-4 Dengue virus Ab.IgG Titr Pt Ser Qn Dengue virus IgG Ab [Titer] in Serum 3.0 3.0 - Added by PITUS-16 Working group 3 Dengue virus IgM 17 Blood/Serum No Unit 25338-5 Dengue virus Ab.IgM PrThr Pt Ser Ord Dengue virus IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Dengue virus IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Dengue virus IgM 17 Blood/Serum titre 6812-2 Dengue virus Ab.IgM Titr Pt Ser Qn Dengue virus IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Dengue virus IgM Ab' 1.0 - Added by PUTS project Dengue virus NS1 Ag 19 Blood/Serum No Unit 31798-2 Dengue virus Ag PrThr Pt Ser Ord Dengue virus Ag [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project Dengue virus total Ab 21 Blood/Serum titre 33606-5 Dengue virus Ab Titr Pt Ser Qn Dengue virus Ab [Titer] in Serum 1.0 Entamoeba histolytica Ab 25 Blood/Serum titre 22286-9 Entamoeba histolytica Ab Titr Pt Ser Qn Entamoeba histolytica Ab [Titer] in Serum 1.0 Enterovirus RNA 15 Any No Unit 29591-5 Enterovirus RNA PrThr Pt XXX Ord Probe.am Enterovirus RNA [Presence] in Unspecified specimen by Probe and 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar target amplification method 1.0 - Added by PUTS project Enterovirus subtype RNA 23 Any No Unit 60528-7 Enterovirus subtype Type Pt XXX Nom Probe.am Enterovirus subtype [Type] in Unspecified specimen by Probe and 1.0 p.tar target amplification method Epstein Barr virus capsid IgG EBV VCA IgG For quantitative reporting 29 Blood/Serum U/mL U/mL 7885-7 Epstein Barr virus capsid Ab.IgG ACnc Pt Ser Qn Epstein Barr virus capsid IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Epstein Barr virus virus capsid Ab IgG' in units/mL 1.0 - Added by PUTS project Epstein Barr virus capsid IgG EBV VCA IgG For qualitative reporting 29 Blood/Serum No Unit 30339-6 Epstein Barr virus capsid Ab.IgG PrThr Pt Ser Ord Epstein Barr virus capsid IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Epstein Barr virus capsid Ab IgG'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Epstein Barr virus capsid IgG EBV VCA IgG For quantitative reporting 29 Blood/Serum titre 20490-9 Epstein Barr virus capsid Ab.IgG Titr Pt Ser Qn Epstein Barr virus capsid IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Epstein Barr virus capsid Ab IgG' in titres 1.0 - Added by PUTS project Epstein Barr virus capsid IgM EBV VCA IgM 29 Blood/Serum No Unit 30340-4 Epstein Barr virus capsid Ab.IgM PrThr Pt Ser Ord Epstein Barr virus capsid IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Epstein Barr virus virus capsid IgM Ab'; changed LOINC property from 'ACnc' 2.1 - Changed preferred term from 'Epstein Barr virus virus capsid Ab IgM' 1.0 - Added by PUTS project Epstein Barr virus capsid IgM EBV VCA IgM 29 Blood/Serum titre 20491-7 Epstein Barr virus capsid Ab.IgM Titr Pt Ser Qn Epstein Barr virus capsid IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Epstein Barr virus capsid Ab IgM' 1.0 - Added by PUTS project Epstein Barr virus capsid IgM EBV VCA IgM 29 Blood/Serum U/mL U/mL 7886-5 Epstein Barr virus capsid Ab.IgM ACnc Pt Ser Qn Epstein Barr virus capsid IgM Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Epstein Barr virus capsid Ab IgM' 1.0 - Added by PUTS project Epstein Barr virus early IgA EBV EA IgA 28 Blood/Serum titre 47435-3 Epstein Barr virus early Ab.IgA Titr Pt Ser Qn Epstein Barr virus early IgA Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Epstein Barr virus early Ab IgA' 1.0 - Added by PUTS project Epstein Barr virus early IgG EBV EA IgG 28 Blood/Serum No Unit 22295-0 Epstein Barr virus early Ab.IgG PrThr Pt Ser Ord Epstein Barr virus early IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Epstein Barr virus early Ab IgG'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Epstein Barr virus nuclear IgG EBNA IgG For qualitative reporting 30 Blood/Serum No Unit 7883-2 Epstein Barr virus nuclear PrThr Pt Ser Ord Epstein Barr virus nuclear IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Epstein Barr virus nuclear Ab IgG'; changed LOINC property Ab.IgG from 'ACnc' 1.0 - Added by PUTS project Epstein Barr virus nuclear IgG EBNA IgG 30 Blood/Serum U/mL U/mL 31374-2 Epstein Barr virus nuclear ACnc Pt Ser Qn Epstein Barr virus nuclear IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Epstein Barr virus nuclear Ab IgG' Ab.IgG 1.0 - Added by PUTS project Epstein Barr virus nuclear IgM EBNA IgM 30 Blood/Serum No Unit 7884-0 Epstein Barr virus nuclear PrThr Pt Ser Ord Epstein Barr virus nuclear IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Epstein Barr virus nuclear Ab IgM'; changed LOINC property Ab.IgM from 'ACnc' 1.0 - Added by PUTS project Epstein Barr virus VCA IgG avidity EBV VCA IgG avidity 34 Blood/Serum % % 81119-0 Epstein Barr virus capsid Ab.IgG Ratio Pt Ser Qn IA Epstein Barr virus capsid IgG Ab avidity [Ratio] in Serum by 3.0 3.0 - Added new LOINC code. avidity Immunoassay 1.0 - Added by PUTS project Flavivirus RNA 14 Any No Unit 51665-8 Flavivirus RNA PrThr Pt XXX Ord Probe.am Flavivirus RNA [Presence] in Unspecified specimen by Probe and 3.0 3.0 - Changed preferred term from 'Flavivirus Group RNA'; changed LOINC property from 'ACnc' p.tar target amplification method 1.0 - Added by PUTS project

Francisella tularensis DNA 26 Any No Unit 33679-2 Francisella tularensis DNA PrThr Pt XXX Ord Probe.am Francisella tularensis DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project Helicobacter pylori IgA For qualitative reporting 24 Blood/Serum No Unit 16125-7 Helicobacter pylori Ab.IgA PrThr Pt Ser Ord Helicobacter pylori IgA Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Helicobacter pylori IgA Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Helicobacter pylori IgA 23 Blood/Serum U/mL U/mL 7901-2 Helicobacter pylori Ab.IgA ACnc Pt Ser Qn Helicobacter pylori IgA Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Helicobacter pylori IgA Ab' 1.0 - Added by PUTS project Helicobacter pylori IgG For qualitative reporting 24 Blood/Serum No Unit 16126-5 Helicobacter pylori Ab.IgG PrThr Pt Ser Ord Helicobacter pylori IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Helicobacter pylori IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Helicobacter pylori IgG 23 Blood/Serum U/mL U/mL 7902-0 Helicobacter pylori Ab.IgG ACnc Pt Ser Qn Helicobacter pylori IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Helicobacter pylori IgG Ab' 1.0 - Added by PUTS project Helicobacter pylori total Ab For qualitative reporting 28 Blood/Serum No Unit 22310-7 Helicobacter pylori Ab PrThr Pt Ser Ord Helicobacter pylori Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Helicobacter pylori Total Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Helicobacter pylori total Ab 28 Blood/Serum U/mL U/mL 7900-4 Helicobacter pylori Ab ACnc Pt Ser Qn Helicobacter pylori Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Helicobacter pylori Total Ab' 1.0 - Added by PUTS project Hendra virus RNA 16 Any No Unit 81689-2 Hendra virus RNA PrThr Pt XXX Ord Probe.am Hendra virus RNA [Presence] in Unspecified specimen by Probe and 3.0 3.0 - Added new LOINC code; changed LOINC property from 'ACnc' p.tar target amplification method 1.0 - Added by PUTS project

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U Hepatitis A IgG HAV IgG 16 Blood/Serum No Unit 32018-4 Hepatitis A virus Ab.IgG PrThr Pt Ser Ord Hepatitis A virus IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Hepatitis A IgG Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis A IgM HAV IgM 16 Blood/Serum No Unit 22314-9 Hepatitis A virus Ab.IgM PrThr Pt Ser Ord Hepatitis A virus IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Hepatitis A IgM Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis A RNA HAV RNA 15 Blood/Serum No Unit 7904-6 Hepatitis A virus RNA PrThr Pt Ser Ord Probe.am Hepatitis A virus RNA [Presence] in Serum by Probe & target 3.0 3.0 - Added by PITUS-16 Working group 3 p.tar amplification method Hepatitis A total Ab HAV total Ab 20 Blood/Serum No Unit 20575-7 Hepatitis A virus Ab PrThr Pt Ser Ord Hepatitis A virus Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Hepatitis A Total Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis B core Ab Anti-HBc; HBV core Ab 19 Blood/Serum No Unit 16933-4 Hepatitis B virus core Ab PrThr Pt Ser Ord Hepatitis B virus core Ab [Presence] in Serum 3.0 3.0 - Added synonyms; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis B core IgM HBc IgM; HBV core IgM 20 Blood/Serum No Unit 31204-1 Hepatitis B virus core Ab.IgM PrThr Pt Ser Ord Hepatitis B virus core IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Hepatitis B core IgM Ab'; Added synonyms; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis B DNA HBV DNA For qualitative reporting 15 Blood/Serum No Unit 29610-3 Hepatitis B virus DNA PrThr Pt Ser/Plas Ord Probe.am Hepatitis B virus DNA [Presence] in Serum or Plasma by Probe and 3.0 3.0 - Changed preferred term from 'Hepatitis B virus DNA'; Added synonym; changed LOINC p.tar target amplification method property from 'ACnc' 1.0 - Added by PUTS project Hepatitis B DNA HBV DNA For quantitative reporting 15 Blood/Serum IU/mL [IU]/mL 42595-9 Hepatitis B virus DNA ACnc Pt Ser/Plas Qn Probe.am Hepatitis B virus DNA [Units/volume] (viral load) in Serum or Plasma 3.0 3.0 - Changed preferred term from 'Hepatitis B virus DNA'; Added synonym in international units/mL p.tar by Probe and target amplification method 1.0 - Added by PUTS project

Hepatitis B DNA HBV DNA For quantitative reporting 15 Any log IU/mL {Log_IU}/mL 49600-0 Hepatitis B virus DNA LaCnc Pt XXX Qn Probe.am Hepatitis B virus DNA [log units/volume] (viral load) in Unspecified 3.0 3.0 - Changed preferred term from 'Hepatitis B virus DNA'; Added synonym in log international p.tar specimen by Probe and target amplification method 1.0 - Added by PUTS project units/mL Hepatitis B DNA HBV DNA For qualitative reporting 15 Any No Unit 5009-6 Hepatitis B virus DNA PrThr Pt XXX Ord Probe.am Hepatitis B virus DNA [Presence] in Unspecified specimen by Probe 3.0 3.0 - Changed preferred term from 'Hepatitis B virus DNA fluid'; Added synonym; changed LOINC p.tar and target amplification method property from 'ACnc' 1.0 - Added by PUTS project Hepatitis B DNA HBV DNA For quantitative reporting 15 Blood/Serum log IU/mL {Log_IU}/mL 48398-2 Hepatitis B virus DNA LaCnc Pt Ser/Plas Qn Probe.am Hepatitis B virus DNA [log units/volume] (viral load) in Serum or 3.0 3.0 - Changed preferred term from 'Hepatitis B virus DNA fluid'; Added synonym in log international p.tar Plasma by Probe and target amplification method 1.0 - Added by PUTS project units/mL Hepatitis B DNA HBV DNA For quantitative reporting 15 Any IU/mL [IU]/mL 49360-1 Hepatitis B virus DNA ACnc Pt XXX Qn Probe.am Hepatitis B virus DNA [Units/volume] (viral load) in Unspecified 3.0 3.0 - Changed preferred term from 'Hepatitis B virus DNA fluid'; Added synonym in international units/mL p.tar specimen by Probe and target amplification method 1.0 - Added by PUTS project

Hepatitis B e Ab Anti-Hbe; HBeAb 17 Blood/Serum No Unit 22320-6 Hepatitis B virus little e Ab PrThr Pt Ser Ord Hepatitis B virus e Ab [Presence] in Serum 3.0 3.0 - Added synonyms; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis B e Ag HBeAg 16 Blood/Serum No Unit 31844-4 Hepatitis B virus little e Ag PrThr Pt Ser Ord Hepatitis B virus e Ag [Presence] in Serum 3.0 3.0 - Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis B surface Ab Anti-HBs; HBsAb 23 Blood/Serum IU/L [IU]/L 16935-9 Hepatitis B virus surface Ab ACnc Pt Ser Qn Hepatitis B virus surface Ab [Units/volume] in Serum 3.0 3.0 - Added synonyms 1.0 - Added by PUTS project Hepatitis B surface Ag HBsAg 22 Blood/Serum IU/mL [IU]/mL 58452-4 Hepatitis B virus surface Ag ACnc Pt Ser Qn Hepatitis B virus surface Ag [Units/volume] in Serum 3.0 3.0 - Added synonym 1.0 - Added by PUTS project Hepatitis B surface Ag HBsAg For qualitative reporting 22 Blood/Serum No Unit 5195-3 Hepatitis B virus surface Ag PrThr Pt Ser Ord Hepatitis B virus surface Ag [Presence] in Serum 3.0 3.0 - Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis B surface Ag HBsAg Use as supplementary 22 Blood/Serum No Unit 65633-0 Hepatitis B virus surface Ag PrThr Pt Ser/Plas Ord Confirm Hepatitis B virus surface Ag [Presence] in Serum or Plasma by 3.0 3.0 - Added synonym, changed preferred term from 'Hepatitis B Surface Ag'; changed LOINC assay Confirmatory method property from 'ACnc' 1.0 - Added by PUTS project Hepatitis B surface Ag HBsAg Use as supplementary 23 Blood/Serum No Unit 7905-3 Hepatitis B virus surface Ag PrThr Pt Ser/Plas Ord Neut Hepatitis B virus surface Ag [Presence] in Serum or Plasma by 3.0 3.0 - Added synonym, changed preferred term from 'Hepatitis B Surface Ag'; changed LOINC assay - neutralisation Neutralization test property from 'ACnc' 1.0 - Added by PUTS project Hepatitis C Ab HCV Ab Use for screening and 14 Blood/Serum No Unit 16128-1 Hepatitis C virus Ab PrThr Pt Ser Ord Hepatitis C virus Ab [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc' supplementary tests 1.0 - Added by PUTS project Hepatitis C Ab immunoblot HCV Ab immunoblot Use as supplementary test - 25 Blood/Serum No Unit 5199-5 Hepatitis C virus Ab PrThr Pt Ser Ord IB Hepatitis C virus Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' immunoblot 1.0 - Added by PUTS project Hepatitis C Ag HCV Ag 14 Blood/Serum pg/mL pg/mL 54914-7 Hepatitis C virus Ag ACnc Pt Ser Qn IA Hepatitis C virus core Ag [Units/volume] in Serum by Immunoassay 3.0 3.0 - Changed Method from EIA 1.0 - Added by PUTS project Hepatitis C Ag, Ab HCV Ag, Ab; HCV Ag-Ab; 19 Blood/Serum No Unit 81116-6 Hepatitis C virus core Ab+Ag PrThr Pt Ser Ord Hepatitis C virus core Ab+Ag [Presence] in Serum 3.0 3.0 - Added new LOINC code HCV Ag,Ab combo assay; 1.0 - Added by PUTS project HCV Ag-Ab combo assay

Hepatitis C genotyping HCV genotyping 22 Blood/Serum No Unit 32286-7 Hepatitis C virus genotype Prid Pt Ser/Plas Nom Probe.am Hepatitis C virus genotype [Identifier] in Serum or Plasma by Probe 3.0 3.0 - Changed preferred term from 'Hepatitis C virus Genotyping'; Added synonym p.tar and target amplification method 1.0 - Added by PUTS project Hepatitis C RNA HCV RNA 15 Blood/Serum No Unit 11259-9 Hepatitis C virus RNA PrThr Pt Ser/Plas Ord Probe.am Hepatitis C virus RNA [Presence] in Serum or Plasma by Probe and 3.0 3.0 - Changed preferred term from 'Hepatitis C virus RNA'; Added synonym; changed LOINC p.tar target amplification method property from 'ACnc' 1.0 - Added by PUTS project Hepatitis C RNA HCV RNA For quantitative reporting 15 Blood/Serum IU/mL [IU]/mL 11011-4 Hepatitis C virus RNA ACnc Pt Ser/Plas Qn Probe.am Hepatitis C virus RNA [Units/volume] (viral load) in Serum or Plasma 3.0 3.0 - Changed preferred term from 'Hepatitis C virus RNA'; Added synonym in international units/mL p.tar by Probe and target amplification method 1.0 - Added by PUTS project

Hepatitis C RNA HCV RNA For quantitative reporting 15 Blood/Serum log IU/mL {Log_IU}/mL 38180-6 Hepatitis C virus RNA LaCnc Pt Ser/Plas Qn Probe.am Hepatitis C virus RNA [log units/volume] (viral load) in Serum or 3.0 3.0 - Changed preferred term from 'Hepatitis C virus RNA'; Added synonym in log international p.tar Plasma by Probe and target amplification method 1.0 - Added by PUTS project units/mL Hepatitis C RNA HCV RNA 15 Any No Unit 5012-0 Hepatitis C virus RNA PrThr Pt XXX Ord Probe.am Hepatitis C virus RNA [Presence] in Unspecified specimen by Probe 3.0 3.0 - Changed preferred term from 'Hepatitis C virus RNA fluid'; Added synonym; changed LOINC p.tar and target amplification method property from 'ACnc' 1.0 - Added by PUTS project Hepatitis D Ag HDV Ag 15 Blood/Serum No Unit 33464-9 Hepatitis D virus Ag PrThr Pt Ser Ord Hepatitis D virus Ag [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Hepatitis D D Ag'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis D IgG HDV IgG 16 Blood/Serum No Unit 35283-1 Hepatitis D virus Ab.IgG PrThr Pt Ser Ord Hepatitis D virus IgG Ab [Presence] in Serum 3.0 3.0 - Added by PITUS-16 Working group 3 Hepatitis D IgM HDV IgM 16 Blood/Serum No Unit 34597-5 Hepatitis D virus Ab.IgM PrThr Pt Ser Ord Hepatitis D virus IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Hepatitis D IgM Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis D total Ab HDV total Ab 20 Blood/Serum No Unit 13248-0 Hepatitis D virus Ab PrThr Pt Ser Ord Hepatitis D virus Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Hepatitis D Total Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis E IgG HEV IgG 15 Blood/Serum No Unit 14211-7 Hepatitis E virus Ab.IgG PrThr Pt Ser Ord Hepatitis E virus IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Hepatitis E IgG Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Hepatitis E IgM HEV IgM 15 Blood/Serum No Unit 14212-5 Hepatitis E virus Ab.IgM PrThr Pt Ser Ord Hepatitis E virus IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Hepatitis E IgM Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U Hepatitis E total Ab HEV total Ab 20 Blood/Serum No Unit 13294-4 Hepatitis E virus Ab PrThr Pt Ser Ord Hepatitis E virus Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Hepatitis E Total Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Herpes simplex virus 1 IgG HSV-1 IgG For quantitative reporting 26 Blood/Serum titre 73559-7 Herpes simplex virus 1 Ab.IgG Titr Pt Ser Qn IF Herpes simplex virus 1 IgG Ab [Titer] in Serum by 3.0 3.0 - Added LOINC code 73559-7, changed preferred term to 'Herpes simplex 1 IgG Ab' in titre Immunofluorescence 1.0 - Added by PUTS project Herpes simplex virus 1 IgG HSV-1 IgG For qualitative reporting 26 Blood/Serum No Unit 17850-9 Herpes simplex virus 1 Ab.IgG PrThr Pt Ser Ord Herpes simplex virus 1 IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 1 IgG Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Herpes simplex virus 1 IgG HSV-1 IgG For quantitative reporting 26 Blood/Serum U/mL U/mL 7909-5 Herpes simplex virus 1 Ab.IgG ACnc Pt Ser Qn Herpes simplex virus 1 IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 1 IgG Ab'; Added synonym in units/mL 1.0 - Added by PUTS project Herpes simplex virus 1 IgM HSV-1 IgM For qualitative reporting 26 Blood/Serum No Unit 32687-6 Herpes simplex virus 1 Ab.IgM PrThr Pt Ser Ord Herpes simplex virus 1 IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 1 IgM Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Herpes simplex virus 1 IgM HSV-1 IgM For quantitative reporting 26 Blood/Serum titre 21326-4 Herpes simplex virus 1 Ab.IgM Titr Pt Ser Qn Herpes simplex virus 1 IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 1 IgM Ab'; Added synonym in titre 1.0 - Added by PUTS project Herpes simplex virus 1 IgM HSV-1 IgM For quantitative reporting 26 Blood/Serum U/mL U/mL 7910-3 Herpes simplex virus 1 Ab.IgM ACnc Pt Ser Qn Herpes simplex virus 1 IgM Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 1 IgM Ab'; Added synonym in units/mL 1.0 - Added by PUTS project Herpes simplex virus 2 IgG HSV-2 IgG For qualitative reporting 26 Blood/Serum No Unit 17851-7 Herpes simplex virus 2 Ab.IgG PrThr Pt Ser Ord Herpes simplex virus 2 IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 2 IgG Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Herpes simplex virus 2 IgG HSV-2 IgG For quantitative reporting 26 Blood/Serum titre 24014-3 Herpes simplex virus 2 Ab.IgG Titr Pt Ser Qn Herpes simplex virus 2 IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 2 IgG Ab'; Added synonym in titre 1.0 - Added by PUTS project Herpes simplex virus 2 IgG HSV-2 IgG For quantitative reporting 26 Blood/Serum U/mL U/mL 7912-9 Herpes simplex virus 2 Ab.IgG ACnc Pt Ser Qn Herpes simplex virus 2 IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 2 IgG Ab'; Added synonym in units/mL 1.0 - Added by PUTS project Herpes simplex virus 2 IgM HSV-2 IgM For qualitative reporting 26 Blood/Serum No Unit 32688-4 Herpes simplex virus 2 Ab.IgM PrThr Pt Ser Ord Herpes simplex virus 2 IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 2 IgM Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Herpes simplex virus 2 IgM HSV-2 IgM For quantitative reporting 27 Blood/Serum U/mL U/mL 7913-7 Herpes simplex virus 2 Ab.IgM ACnc Pt Ser Qn Herpes simplex virus 2 IgM Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 2 IgM Ab'; Added synonym in units/mL 1.0 - Added by PUTS project Herpes simplex virus 2 IgM HSV-2 IgM For quantitative reporting 26 Blood/Serum titre 21327-2 Herpes simplex virus 2 Ab.IgM Titr Pt Ser Qn Herpes simplex virus 2 IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 2 IgM Ab'; Added synonym in titre 1.0 - Added by PUTS project Herpes simplex virus 1 & 2 IgG HSV 1 & 2 IgG For quantitative reporting 30 Blood/Serum U/mL U/mL 31411-2 Herpes simplex virus 1+2 Ab.IgG ACnc Pt Ser Qn Herpes simplex virus 1+2 IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 1 & 2 IgG Ab'; Added synonym; Changed in units/mL Component field from Herpes simplex virus 1, 2 Ab.IgG 1.0 - Added by PUTS project Herpes simplex virus 1 & 2 IgG HSV 1 & 2 IgG For quantitative reporting 30 Blood/Serum titre 34613-0 Herpes simplex virus 1+2 Ab.IgG Titr Pt Ser Qn Herpes simplex virus 1+2 IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 1 & 2 IgG Ab'; Added synonym; Chnaged in titre Components field from Herpes simplex virus 1, 2 Ab.IgG 1.0 - Added by PUTS project Herpes simplex virus 1 & 2 IgG HSV 1 & 2 IgG For qualitative reporting 30 Blood/Serum No Unit 36921-5 Herpes simplex virus 1+2 Ab.IgG PrThr Pt Ser Ord Herpes simplex virus 1+2 IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 1 & 2 IgG Ab'; Added synonym; changed LOINC property from 'ACnc'; Changed Component field from Herpes simplex virus 1, 2 Ab.IgG 1.0 - Added by PUTS project

Herpes simplex virus 1 & 2 IgM HSV 1 & 2 IgM For qualitative reporting 30 Blood/Serum No Unit 41149-6 Herpes simplex virus 1+2 PrThr Pt Ser Ord Herpes simplex virus 1+2 IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 1 & 2 IgM Ab'; Added synonym; changed LOINC Ab.IgM property from 'ACnc'; Changed Component field from Herpes simplex virus 1, 2 Ab.IgM 1.0 - Added by PUTS project

Herpes simplex virus 1 & 2 IgM HSV 1 & 2 IgM For quantitative reporting 30 Blood/Serum titre 34152-9 Herpes simplex virus 1+2 Titr Pt Ser Qn Herpes simplex virus 1+2 IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 1 & 2 IgM Ab'; Added synonym; Changed in titre Ab.IgM Component field from Herpes simplex virus 1, 2 Ab.IgM 1.0 - Added by PUTS project Herpes simplex virus 1 & 2 IgM HSV 1 & 2 IgM For quantitative reporting 30 Blood/Serum U/mL U/mL 43030-6 Herpes simplex virus 1+2 ACnc Pt Ser Qn Herpes simplex virus 1+2 IgM Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex 1 & 2 IgM Ab'; Added synonym; Changed in units/mL Ab.IgM Component field from Herpes simplex virus 1, 2 Ab.IgM 1.0 - Added by PUTS project Herpes simplex virus 1 & 2 total Ab HSV 1 & 2 total Ab For qualitative reporting 35 Blood/Serum No Unit 22339-6 Herpes simplex virus Ab PrThr Pt Ser Ord Herpes simplex virus Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex Virus 1 & 2 total Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Herpes simplex virus 1 & 2 total Ab HSV 1 & 2 total Ab For qualitative reporting 35 Blood/Serum No Unit 16942-5 Herpes simplex virus Ab PrThr Pt Ser Ord IB Herpes simplex virus Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed preferred term from 'Herpes simplex Virus 1 & 2 total Ab'; Added synonym; changed with immunoblot LOINC property from 'ACnc' 1.0 - Added by PUTS project Herpes simplex virus 1 & 2 total Ab HSV 1 & 2 total Ab For quantitative reporting 35 Blood/Serum titre 22341-2 Herpes simplex virus Ab Titr Pt Ser Qn Herpes simplex virus Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex Virus 1 & 2 total Ab'; Added synonym in titre 1.0 - Added by PUTS project Herpes simplex virus 1 & 2 total Ab HSV 1 & 2 total Ab For quantitative reporting 35 Blood/Serum U/mL U/mL 7907-9 Herpes simplex virus Ab ACnc Pt Ser Qn Herpes simplex virus Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Herpes simplex Virus 1 & 2 total Ab'; Added synonym in units/mL 1.0 - Added by PUTS project Herpes simplex virus 1 & 2 total Ab HSV 1 & 2 total Ab CSF 39 CSF titre 22340-4 Herpes simplex virus Ab Titr Pt CSF Qn Herpes simplex virus Ab [Titer] in Cerebral spinal fluid 3.0 3.0 - Changed preferred term from 'Herpes simplex Virus 1 & 2 total Ab CSF'; Added synonym CSF 1.0 - Added by PUTS project

Herpes simplex virus type 1 DNA 31 Any No Unit 16130-7 Herpes simplex virus 1 DNA PrThr Pt XXX Ord Probe.am Herpes simplex virus 1 DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed preferred term from 'Herpes simplex virus type 1 DNA fluid'; Changed LOINC p.tar Probe and target amplification method property to 'ACnc' 1.0 - Added by PUTS project Herpes simplex virus type 2 DNA 31 Any No Unit 16131-5 Herpes simplex virus 2 DNA PrThr Pt XXX Ord Probe.am Herpes simplex virus 2 DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed preferred term from 'Herpes simplex virus type 2 DNA fluid'; Changed LOINC p.tar Probe and target amplification method property to 'ACnc' 1.0 - Added by PUTS project HIV 1 gp41 band With western blot method 15 Blood/Serum No Unit 9662-8 HIV 1 gp41 Ab PrThr Pt Ser Ord IB HIV 1 gp41 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 p15 band With western blot method 14 Blood/Serum No Unit 12872-8 HIV 1 p15 Ab PrThr Pt Ser Ord IB HIV 1 p15 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 p17 band With western blot method 14 Blood/Serum No Unit 9663-6 HIV 1 p17 Ab PrThr Pt Ser Ord IB HIV 1 p17 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 p17, p18 bands With western blot method 20 Blood/Serum No Unit 32827-8 HIV 1 p17+p18 Ab PrThr Pt Ser Ord IB HIV 1 p17+p18 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc'; Changed Comonent field from HIV 1 p17, p18 Ab 1.0 - Added by PUTS project HIV 1 p18 band With western blot method 14 Blood/Serum No Unit 12859-5 HIV 1 p18 Ab PrThr Pt Ser Ord IB HIV 1 p18 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 p24 band With western blot method 14 Blood/Serum No Unit 9664-4 HIV 1 p24 Ab PrThr Pt Ser Ord IB HIV 1 p24 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 p31 band With western blot method 14 Blood/Serum No Unit 9666-9 HIV 1 p31 Ab PrThr Pt Ser Ord IB HIV 1 p31 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 p32 band With western blot method 14 Blood/Serum No Unit 35564-4 HIV 1 p31+p32 Ab PrThr Pt Ser Ord IB HIV 1 p31+p32 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc'; Changed Component field from HIV 1 p31, p32 Ab 1.0 - Added by PUTS project HIV 1 p40 band With western blot method 14 Blood/Serum No Unit 35565-1 HIV 1 p40 Ab PrThr Pt Ser Ord IB HIV 1 p40 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 p51 band With western blot method 14 Blood/Serum No Unit 9667-7 HIV 1 p51 Ab PrThr Pt Ser Ord IB HIV 1 p51 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U HIV 1 p53 band With western blot method 14 Blood/Serum No Unit 12876-9 HIV 1 p53 Ab PrThr Pt Ser Ord IB HIV 1 p53 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 p55 band With western blot method 14 Blood/Serum No Unit 9668-5 HIV 1 p55 Ab PrThr Pt Ser Ord IB HIV 1 p55 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 p66 band With western blot method 14 Blood/Serum No Unit 9669-3 HIV 1 p66 Ab PrThr Pt Ser Ord IB HIV 1 p66 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 p68 band With western blot method 14 Blood/Serum No Unit 12894-2 HIV 1 p68 Ab PrThr Pt Ser Ord IB HIV 1 p68 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 Ab western blot With western blot method 21 Blood/Serum No Unit 13499-9 HIV 1 Ab band pattern Imp Pt Ser Nom IB HIV 1 Ab band pattern [Interpretation] in Serum by Immunoblot (IB) 3.0 3.0 - Changed preferred term from 'HIV 1 confirmatory test' 1.0 - Added by PUTS project HIV 1 p24 Ag 12 Blood/Serum No Unit 33660-2 HIV 1 p24 Ag PrThr Pt Ser Ord Neut HIV 1 p24 Ag [Presence] in Serum by Neutralization test 3.0 3.0 - Changed preferred term from 'HIV 1 Ag confirmatory Test'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project HIV 1 gp120 band With western blot method 16 Blood/Serum No Unit 9661-0 HIV 1 gp120 Ab PrThr Pt Ser Ord IB HIV 1 gp120 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 gp160 band With western blot method 16 Blood/Serum No Unit 9660-2 HIV 1 gp160 Ab PrThr Pt Ser Ord IB HIV 1 gp160 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 1 RNA For specimens other than 9 Any log {Log_copies}/mL 49890-7 HIV 1 RNA LnCnc Pt XXX Qn Probe.am HIV 1 RNA [Log #/volume] (viral load) in Unspecified specimen by 1.0 blood copies/mL p.tar Probe and target amplification method HIV 1 RNA 10 Blood/Serum copies/mL {copies}/mL 20447-9 HIV 1 RNA NCnc Pt Ser/Plas Qn Probe.am HIV 1 RNA [#/volume] (viral load) in Serum or Plasma by Probe and 1.0 p.tar target amplification method HIV 1 RNA For specimens other than 10 Any copies/mL {copies}/mL 25836-8 HIV 1 RNA NCnc Pt XXX Qn Probe.am HIV 1 RNA [#/volume] (viral load) in Unspecified specimen by Probe 1.0 blood p.tar and target amplification method HIV 2 western blot With western blot method 18 Blood/Serum No Unit 31073-0 HIV 2 Ab band pattern Imp Pt Ser Nom IB HIV 2 Ab band pattern [Interpretation] in Serum by Immunoblot (IB) 3.0 3.0 - Changed preferred term from 'HIV 2 confirmatory test' 1.0 - Added by PUTS project HIV 2 gp36 band With western blot method 15 Blood/Serum No Unit 10902-5 HIV 2 gp36 Ab PrThr Pt Ser Ord IB HIV 2 gp36 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV 2 RNA quantitative With western blot method 22 Blood/Serum IU/mL [IU]/mL 69354-9 HIV 2 RNA ACnc Pt Ser/Plas Qn Probe.am HIV 2 RNA [Units/volume] (viral load) in Serum or Plasma by Probe 1.0 1.0 - Added by PUTS project p.tar and target amplification method HIV Ab 7 Blood/Serum No Unit 48345-3 HIV 1+O+2 Ab PrThr Pt Ser/Plas Ord HIV 1+O+2 Ab [Presence] in Serum or Plasma 3.0 3.0 - Changed LOINC property to 'ACnc'; Changed Compnent field from HIV 1, O, 2 Ab 1.0 - Added by PUTS project HIV Ag rapid tests 3.0 3.0 - PITUS-16 working group 3 decided to remove this test from the list 1.0 - Added by PUTS project HIV Ag/Ab combination 22 Blood/Serum No Unit 56888-1 HIV 1+2 Ab+HIV1 p24 Ag PrThr Pt Ser/Plas Ord IA HIV 1, 2 Ab, HIV1 p24 Ag [Presence] in Serum by Immunoassay 3.0 3.0 - Changed preferred term from 'HIV Ag/Ab Combination'; changed LOINC property from 'ACnc'; Changed Component field from HIV 1, 2 Ab, HIV1 p24 Ag; Changed Method field from EIA 1.0 - Added by PUTS project

HIV p24 Ag 11 Blood/Serum pg/mL pg/mL 42339-2 HIV 1 p24 Ag MCnc Pt Ser Qn IA HIV 1 p24 Ag [Mass/volume] in Serum by Immunoassay 3.0 3.0 - Changed Method field from EIA 1.0 - Added by PUTS project HIV p24 Ag 11 Blood/Serum No Unit 9821-0 HIV 1 p24 Ag PrThr Pt Ser Ord HIV 1 p24 Ag [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HIV2 Ab 8 Blood/Serum No Unit 7919-4 HIV 2 Ab PrThr Pt Ser Ord HIV 2 Ab [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project HTLV Ab 8 Blood/Serum No Unit 22362-8 HTLV I+II Ab PrThr Pt Ser Ord HTLV 1, 2 Ab [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc'; Changed Component field from HTLV 1, 2 Ab 1.0 - Added by PUTS project HTLV Ab Supplementary test with 8 Blood/Serum No Unit 16982-1 HTLV I+II Ab PrThr Pt Ser Ord IB HTLV 1, 2 Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed LOINC property to 'ACnc'; Changed Component field from HTLV 1, 2 Ab immunoblot 1.0 - Added by PUTS project Human Papilloma virus DNA 26 Any No Unit 44547-8 Human papilloma virus DNA PrThr Pt XXX Ord Probe.am Human papilloma virus DNA [Presence] in Unspecified specimen by 3.0 3.0 - Added synonym; changed LOINC property from 'ACnc' p.sig Probe and signal amplification method 1.0 - Added by PUTS project Human Papilloma virus genotyping 32 Any No Unit 48560-7 Human papilloma virus Prid Pt XXX Nom Probe.am Human papilloma virus genotype [Identifier] in Unspecified specimen 3.0 3.0 - Changed preferred term from 'Human Papilloma virus Genotyping' and added synonym genotype p.tar by Probe and target amplification method 1.0 - Added by PUTS project

Human Papilloma virus high risk type For use with Digene 40 Cervical No Unit 30167-1 Human papilloma virus PrThr Pt Cvx Ord Probe.am Human papilloma virus 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 68 3.0 3.0 - Added synonym; changed LOINC property from 'ACnc'; Changed Component field from DNA method detecting high risk 16+18+31+33+35+39+45+51+52 p.sig DNA [Presence] in Cervix by Probe and signal amplification method Human papilloma virus 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 68 DNA types 16, 18, 31, 33, 35, 39, +56+58+59+68 DNA 1.0 - Added by PUTS project 45, 51, 52, 56, 58, 59 and 68 Human Papilloma virus high risk type For use with Roche Cobas 40 Cervical No Unit 71431-1 Human papilloma virus PrThr Pt Cvx Ord Probe.am Human papilloma virus 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66, 68 3.0 3.0 - Added synonym; changed LOINC property from 'ACnc'; Changed Component field from DNA 4800 Human Papilloma 31+33+35+39+45+51+52+56+58 p.tar DNA [Presence] in Cervix by Probe and target amplification method Human papilloma virus 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66, 68 DNA virus assay detecting high +59+66+68 DNA 1.0 - Added by PUTS project risk types 31, 33, 35, 39, 45, 51, 52, 56,58, 59, 66 and 68

Human Papilloma virus type 16 DNA 34 Cervical No Unit 59263-4 Human papilloma virus 16 DNA PrThr Pt Cvx Ord Probe.am Human papilloma virus 16 DNA [Presence] in Cervix by Probe and 3.0 3.0 - Added synonym; changed LOINC property from 'ACnc' p.sig signal amplification method 1.0 - Added by PUTS project Human Papilloma virus type 18 DNA 33 Cervical No Unit 59264-2 Human papilloma virus 18 DNA PrThr Pt Cvx Ord Probe.am Human papilloma virus 18 DNA [Presence] in Cervix by Probe and 3.0 3.0 - Added synonym; changed LOINC property from 'ACnc' p.sig signal amplification method 1.0 - Added by PUTS project Hydatid total Ab For qualitative reporting 16 Blood/Serum No Unit 25339-3 Echinococcus sp Ab PrThr Pt Ser Ord Echinococcus sp Ab [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project Hydatid total Ab 16 Blood/Serum titre 25867-3 Echinococcus sp Ab Titr Pt Ser Qn Echinococcus sp Ab [Titer] in Serum 1.0 Influenza A Ag For qualitative reporting 14 Any No Unit 31859-2 Influenza virus A Ag PrThr Pt XXX Ord Influenza virus A Ag [Presence] in Unspecified specimen 3.0 3.0 - Changed LOINC property to 'ACnc' with 1.0 - Added by PUTS project immunochromatographic test Influenza A Ag For qualitative reporting 14 Any No Unit 5863-6 Influenza virus A Ag PrThr Pt XXX Ord IF Influenza virus A Ag [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' with immunofluorescence Immunofluorescence 1.0 - Added by PUTS project method

Influenza A IgA 15 Blood/Serum No Unit 43851-5 Influenza virus A Ab.IgA PrThr Pt Ser Ord Influenza virus A IgA Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Influenza A IgA Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Influenza A IgG 15 Blood/Serum No Unit 43837-4 Influenza virus A Ab.IgG PrThr Pt Ser Ord Influenza virus A IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Influenza A IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Influenza A IgM 15 Blood/Serum No Unit 43838-2 Influenza virus A Ab.IgM PrThr Pt Ser Ord Influenza virus A IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Influenza A IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Influenza A RNA 15 Any No Unit 34487-9 Influenza virus A RNA PrThr Pt XXX Ord Probe.am Influenza virus A RNA [Presence] in Unspecified specimen by Probe 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar and target amplification method 1.0 - Added by PUTS project

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U Influenza A subtype 19 Any No Unit 22827-0 Influenza virus A subtype Prid Pt XXX Nom Probe.am Influenza virus A subtype [Identifier] in Unspecified specimen by 3.0 3.0 - Changed preferred term from 'Influenza A Subtype' p.tar Probe and target amplification method 1.0 - Added by PUTS project Influenza A total Ab For qualitative reporting 20 Blood/Serum No Unit 22096-2 Influenza virus A Ab PrThr Pt Ser Ord Influenza virus A Ab [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project Influenza A total Ab For quantitative reporting 20 Blood/Serum titre 5229-0 Influenza virus A Ab Titr Pt Ser Qn Comp fix Influenza virus A Ab [Titer] in Serum by Complement fixation 1.0 with complement fixation method

Influenza A total Ab For quantitative reporting 20 Blood/Serum titre 22824-7 Influenza virus A Ab Titr Pt Ser Qn HAI Influenza virus A Ab [Titer] in Serum by Hemagglutination inhibition 1.0 with complement fixation method

Influenza A total Ab For quantitative reporting 20 Blood/Serum titre 22365-1 Influenza virus A Ab Titr Pt Ser Qn Influenza virus A Ab [Titer] in Serum 1.0 with methods other than hemagglutination inhibition assay or complement fixation method

Influenza B Ag For qualitative reporting 14 Any No Unit 31864-2 Influenza virus B Ag PrThr Pt XXX Ord Influenza virus B Ag [Presence] in Unspecified specimen 3.0 3.0 - Changed LOINC property to 'ACnc' with complement fixation 1.0 - Added by PUTS project method Influenza B Ag For qualitative reporting 14 Any No Unit 5867-7 Influenza virus B Ag PrThr Pt XXX Ord IF Influenza virus B Ag [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' with immunofluorescence Immunofluorescence 1.0 - Added by PUTS project method

Influenza B IgA 15 Blood/Serum No Unit 43852-3 Influenza virus B Ab.IgA PrThr Pt Ser Ord Influenza virus B IgA Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Influenza B IgA Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Influenza B IgG 15 Blood/Serum No Unit 43839-0 Influenza virus B Ab.IgG PrThr Pt Ser Ord Influenza virus B IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Influenza B IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Influenza B IgM 15 Blood/Serum No Unit 43840-8 Influenza virus B Ab.IgM PrThr Pt Ser Ord Influenza virus B IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Influenza B IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Influenza B RNA 15 Any No Unit 40982-1 Influenza virus B RNA PrThr Pt XXX Ord Probe.am Influenza virus B RNA [Presence] in Unspecified specimen by Probe 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar and target amplification method 1.0 - Added by PUTS project Influenza B total Ab 20 Blood/Serum No Unit 44570-0 Influenza virus B Ab PrThr Pt Ser Ord Influenza virus B Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Influenza B Total Ab'; changed LOINC property from 'ACnc' 2.1 - Changed preferred term from 'Influenza B Total' 1.0 - Added by PUTS project

Influenza B total Ab complement For quantitative reporting 40 Blood/Serum titre 5230-8 Influenza virus B Ab Titr Pt Ser Qn Comp fix Influenza virus B Ab [Titer] in Serum by Complement fixation 3.0 3.0 - Changed preferred term from 'Influenza B Total Complement Fixation Ab' fixation with complement fixation 2.1 - Changed preferred term from 'Influenza B Total Complement Fixation' method 1.0 - Added by PUTS project

Influenza B total Ab HAI For quantitative reporting 24 Blood/Serum titre 50709-5 Influenza virus B Ab Titr Pt Ser Qn HAI Influenza virus B Ab [Titer] in Serum by Hemagglutination inhibition 3.0 3.0 - Changed preferred term from 'Influenza B Total HAI Ab' with complement fixation 2.1 - Changed preferred term from 'Influenza B Total HAI' method 1.0 - Added by PUTS project

Influenza B total Ab methodless For quantitative reporting 31 Blood/Serum titre 22367-7 Influenza virus B Ab Titr Pt Ser Qn Influenza virus B Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Influenza B Total Methodless Ab' with methods other than 2.1 - Changed preferred term from 'Influenza B Total Methodless' hemagglutination 1.0 - Added by PUTS project inhibition assay or complement fixation method

Interferon gamma release assay For use with assays like 30 Blood/Serum No Unit 45323-3 Mycobacterium tuberculosis PrThr Pt Bld Ord Mycobacterium tuberculosis tuberculin stimulated gamma interferon 3.0 3.0 - Changed LOINC property to 'ACnc' QuantiFERON®-TB tuberculin stimulated gamma [Presence] in Blood 1.0 - Added by PUTS project interferon Japanese encephalitis virus RNA 31 Any No Unit 51666-6 Japanese encephalitis virus RNA PrThr Pt XXX Ord Probe.am Japanese encephalitis virus RNA [Presence] in Unspecified specimen 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar by Probe and target amplification method 1.0 - Added by PUTS project JC virus DNA 12 Any No Unit 42921-7 JC virus DNA PrThr Pt XXX Ord Probe.am JC virus DNA [Presence] in Unspecified specimen by Probe and target 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar amplification method 1.0 - Added by PUTS project Kunjin virus IgM 16 Blood/Serum No Unit 81096-0 West Nile virus Kunjin strain PrThr Pt Ser Ord West Nile virus Kunjin strain IgM Ab [Presence] in Serum 3.0 3.0 - Added new LOINC code. Ab.IgM 1.0 - Added by PUTS project Kunjin virus RNA 16 Any No Unit 81650-4 West Nile virus Kunjin strain PrThr Pt XXX Ord Probe.am West Nile virus Kunjin strain RNA [Presence] in Unspecified specimen 3.0 3.0 - Added new LOINC code. RNA p.tar by Probe and target amplification method 1.0 - Added by PUTS project Kunjin virus total Ab 21 Blood/Serum No Unit 81097-8 West Nile virus Kunjin strain Ab PrThr Pt Ser Ord Kunjin virus Ab [Presence] in Serum 3.0 3.0 - Added new LOINC code. 1.0 - Added by PUTS project Legionella Ag Urine pneumophila 1 specific 19 Urine No Unit 31868-3 Legionella pneumophila 1 Ag PrThr Pt Urine Ord Legionella pneumophila 1 Ag [Presence] in Urine 3.0 3.0 - Changed LOINC property to 'ACnc' assay 1.0 - Added by PUTS project Legionella longbeachae 1 IgM 28 Blood/Serum No Unit 17054-8 Legionella longbeachae 1 PrThr Pt Ser Ord Legionella longbeachae 1 IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Legionella longbeachae 1 IgM Ab'; changed LOINC property Ab.IgM from 'ACnc' 1.0 - Added by PUTS project Legionella longbeachae 2 IgM For qualitative reporting 28 Blood/Serum No Unit 17056-3 Legionella longbeachae 2 PrThr Pt Ser Ord Legionella longbeachae 2 IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Legionella longbeachae 2 IgM Ab'; changed LOINC property Ab.IgM from 'ACnc' 1.0 - Added by PUTS project Legionella longbeachae DNA 26 Any No unit 81690-0 Legionella longbeachae 1 & 2 Prid Pt XXX Nom Probe.am Legionella longbeachae 1 and 2 DNA [Identifier] in Unspecified 3.0 3.0 - Added new LOINC code. DNA p.tar specimen by Probe and target amplification method 1.0 - Added by PUTS project

Legionella longbeachae total Ab 31 Blood/Serum No Unit 13255-5 Legionella longbeachae 1+2 Ab PrThr Pt Ser Ord Legionella longbeachae 1+2 Ab [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc'; Changed Component from Legionella longbeachae 1, 2 Ab 1.0 - Added by PUTS project

Legionella longbeachae total Ab 31 Blood/Serum titre 32694-2 Legionella longbeachae 1+2 Ab Titr Pt Ser Qn Legionella longbeachae 1+2 Ab [Titer] in Serum 3.0 3.0 - Changed Component from Legionella longbeachae 1, 2 Ab 1.0 - Added by PUTS project Legionella pneumophila 1 IgM 28 Blood/Serum titre 22382-6 Legionella pneumophila 1 Titr Pt Ser Qn Legionella pneumophila 1 IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Legionella pneumophila 1 IgM Ab' Ab.IgM 1.0 - Added by PUTS project Legionella pneumophila 1 IgM For qualitative reporting 29 Blood/Serum No Unit 35395-3 Legionella pneumophila 1 PrThr Pt Ser Ord Legionella pneumophila 1 IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Legionella pneumophila 1 IgM Ab'; changed LOINC property Ab.IgM from 'ACnc' 1.0 - Added by PUTS project

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U Legionella pneumophila 1 total Ab 33 Blood/Serum titre 17060-5 Legionella pneumophila 1 Ab Titr Pt Ser Qn Legionella pneumophila 1 Ab [Titer] in Serum 1.0

Legionella pneumophila 1 total Ab 34 Blood/Serum No Unit 40840-1 Legionella pneumophila 1 Ab PrThr Pt Ser Ord Legionella pneumophila 1 Ab [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project Legionella pneumophila IgG 26 Blood/Serum titre 21362-9 Legionella pneumophila Ab.IgG Titr Pt Ser Qn IF Legionella pneumophila IgG Ab [Titer] in Serum by 3.0 3.0 - Changed preferred term from 'Legionella pneumophila IgG Ab' Immunofluorescence 1.0 - Added by PUTS project Legionella pneumophila IgM 26 Blood/Serum No Unit 49914-5 Legionella pneumophila PrThr Pt Ser Ord Legionella pneumophila 1+2+3+4+5+6 IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Legionella pneumophila IgM Ab'; changed LOINC property from 1+2+3+4+5+6 Ab.IgM 'ACnc'' Changed from Legionella pneumophila 1, 2, 3, 4, 5, 6 Ab.IgM 1.0 - Added by PUTS project Legionella pneumophila total Ab 32 Blood/Serum titre 5237-3 Legionella pneumophila Ab Titr Pt Ser Qn IF Legionella pneumophila Ab [Titer] in Serum by Immunofluorescence 3.0 3.0 - Changed preferred term from 'Legionella pneumophila Total Ab ' 1.0 - Added by PUTS project Legionella sp IgG 17 Blood/Serum No Unit 49915-2 Legionella sp Ab.IgG PrThr Pt Ser Ord Legionella sp IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Legionella sp IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Legionella sp IgM 17 Blood/Serum No Unit 81118-2 Legionella sp Ab.IgM PrThr Pt Ser Ord Legionella sp IgM Ab [Presence] in Serum 3.0 3.0 - Added new LOINC code. 1.0 - Added by PUTS project Legionella sp IgM 17 Blood/Serum titre 39559-0 Legionella sp Ab.IgM Titr Pt Ser Qn Legionella sp IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Legionella sp IgM Ab' 1.0 - Added by PUTS project Legionella sp total Ab 22 Blood/Serum titre 22399-0 Legionella sp Ab Titr Pt Ser Qn Legionella sp Ab [Titer] in Serum 1.0 Leptospira borgpetersenii serovar 44 Serum titre 81098-6 Leptospira borgpetersenii Titr Pt Ser Qn Aggl Leptospira borgpetersenii serovar Arborea Ab [Titer] in Serum by 3.0 3.0 - Added new LOINC code. Arborea Ab serovar Arborea Ab Agglutination 1.0 - Added by PUTS project Leptospira borgpetersenii serovar 43 Serum titre 42996-9 Leptospira borgpetersenii Titr Pt Ser Qn Leptospira borgpetersenii sv Ballum Ab [Titer] in Serum 1.0 Ballum Ab serovar Ballum Ab Leptospira borgpetersenii serovar 46 Blood/Serum titre 42995-1 Leptospira borgpetersenii Titr Pt Ser Qn Leptospira borgpetersenii sv Tarrasovi Ab [Titer] in Serum 1.0 Tarassovi Ab serovar Tarrasovi Ab Leptospira interrogans Ab 25 Blood/Serum titre 56952-5 Leptospira interrogans Ab Titr Pt Ser Qn Aggl Leptospira interrogans Ab [Titer] in Serum by Agglutination 1.0 Leptospira interrogans serovar 43 Blood/Serum titre 59370-7 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Australis Ab [Titer] in Serum by 1.0 Australis Ab Australis Ab Agglutination Leptospira interrogans serovar 42 Blood/Serum titre 59368-1 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Bataviae Ab [Titer] in Serum by 1.0 Bataviae Ab Bataviae Ab Agglutination Leptospira interrogans serovar 43 Serum titre 81099-4 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Bulgarica Ab [Titer] in Serum by 3.0 3.0 - Added new LOINC code Bulgarica Ab Bulgarica Ab Agglutination 1.0 - Added by PUTS project Leptospira interrogans serovar 42 Blood/Serum titre 22401-4 Leptospira interrogans serovar Titr Pt Ser Qn Leptospira interrogans sv Canicola Ab [Titer] in Serum 1.0 Canicola Ab Canicola Ab Leptospira interrogans serovar 43 Serum titre 81100-0 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Celledoni Ab [Titer] in Serum by 3.0 3.0 - Added new LOINC code Celledoni Ab Celledoni Ab Agglutination 1.0 - Added by PUTS project Leptospira interrogans serovar 45 Serum titre 81101-8 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Copenhageni Ab [Titer] in Serum by 3.0 3.0 - Added new LOINC code Copenhageni Ab Copenhageni Ab Agglutination 1.0 - Added by PUTS project Leptospira interrogans serovar 43 Serum titre 81102-6 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Cynopteri Ab [Titer] in Serum by 3.0 3.0 - Added new LOINC code Cynopteri Ab Cynopteri Ab Agglutination 1.0 - Added by PUTS project Leptospira interrogans serovar 47 Blood/Serum titre 15478-1 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Grippotyphosa Ab [Titer] in Serum by 1.0 Grippotyphosa Ab Grippotyphosa Ab Agglutination Leptospira interrogans serovar Hardjo 40 Blood/Serum titre 15479-9 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Hardjo Ab [Titer] in Serum by Agglutination 1.0 Ab Hardjo Ab Leptospira interrogans serovar 53 Blood/Serum titre 15480-7 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Icterohaemorrhagiae Ab [Titer] in Serum by 1.0 Icterohaemorrhagiae Ab Icterohaemorrhagiae Ab Agglutination

Leptospira interrogans serovar 42 Blood/Serum titre 59422-6 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Javanica Ab [Titer] in Serum by 1.0 Javanica Ab Javanica Ab Agglutination Leptospira interrogans serovar 43 Serum titre 81103-4 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Kremastos Ab [Titer] in Serum by 3.0 3.0 - Added new LOINC code Kremastos Ab Kremastos Ab Agglutination 1.0 - Added by PUTS project Leptospira interrogans serovar 44 Serum titre 81104-2 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Medanensis Ab [Titer] in Serum by 3.0 3.0 - Added new LOINC code5 Medanensis Ab Medanensis Ab Agglutination 1.0 - Added by PUTS project Leptospira interrogans serovar 40 Serum titre 81105-9 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Panama Ab [Titer] in Serum by 3.0 3.0 - Added new LOINC code Panama Ab Panama Ab Agglutination 1.0 - Added by PUTS project Leptospira interrogans serovar 40 Blood/Serum titre 15481-5 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Pomona Ab [Titer] in Serum by 1.0 Pomona Ab Pomona Ab Agglutination Leptospira interrogans serovar 43 Blood/Serum titre 59364-0 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Pyrogenes Ab [Titer] in Serum by 1.0 Pyrogenes Ab Pyrogenes Ab Agglutination Leptospira interrogans serovar 43 Serum titre 81106-7 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Robinsoni Ab [Titer] in Serum by 3.0 3.0 - Added new LOINC code Robinsoni Ab Robinsoni Ab Agglutination 1.0 - Added by PUTS project Leptospira interrogans serovar 42 Serum titre 81107-5 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Shermani Ab [Titer] in Serum by 3.0 3.0 - Added new LOINC code Shermani Ab Shermani Ab Agglutination 1.0 - Added by PUTS project Leptospira interrogans serovar 43 Serum titre 81108-3 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Szwajizak Ab [Titer] in Serum by 3.0 3.0 - Added new LOINC code Szwajizak Ab Szwajizak Ab Agglutination 1.0 - Added by PUTS project Leptospira interrogans serovar 43 Blood/Serum titre 59367-3 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Pomona Ab [Titer] in Serum by 2.1 2.1 - Changed preferred term from 'Leptospira interrogans serovar Tarassovi Ab' Tarassovi Ab Tarassovi Ab Agglutination 1.0 - Added by PUTS project Leptospira interrogans serovar Zanoni 40 Serum titre 81109-1 Leptospira interrogans serovar Titr Pt Ser Qn Aggl Leptospira interrogans sv Zanoni Ab [Titer] in Serum by Agglutination 3.0 3.0 - Added new LOINC code Ab Zanoni Ab 1.0 - Added by PUTS project Leptospira sp IgM 17 Blood/Serum No Unit 23202-5 Leptospira sp Ab.IgM PrThr Pt Ser Ord Leptospira sp IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Leptospira sp IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Leptospira sp total Ab 22 Blood/Serum titre 7959-0 Leptospira sp Ab Titr Pt Ser Qn Leptospira sp Ab [Titer] in Serum 1.0 Leptospira weilii serovar Topaz Ab 34 Serum titre 81110-9 Leptospira weilii serovar Topaz Titr Pt Ser Qn Aggl Leptospira weilii serovar Topaz Ab [Titer] in Serum by Agglutination 3.0 3.0 - Added new LOINC code Ab 1.0 - Added by PUTS project M. tuberculosis ethambutol Molecular assay for (embB) 38 Isolate No Unit 46247-3 Mycobacterium tuberculosis Prid Pt Isolate Nom Probe.am Mycobacterium tuberculosis ethambutol resistance (embB) gene 1.0 resistance gene mutations ethambutol resistance (embB) p.tar [Identifier] by Probe and target amplification method gene M. tuberculosis isoniazid resistance Molecular assay for (katG , 37 Any No Unit 48175-4 Mycobacterium tuberculosis PrThr Pt XXX Ord Probe.am Mycobacterium tuberculosis.isoniazid resistantMycobacterium 3.0 3.0 - Changed LOINC property to 'ACnc'; Changed Component field from Mycobacterium inhA) genes mutations isoniazid resistance (katG + p.tar tuberculosis isoniazid resistance (katG , inhA) genes [Presence] by tuberculosis isoniazid resistance (katG , inhA) genes inhA) genes Probe and target amplification method 1.0 - Added by PUTS project

M. tuberculosis rifampin resistance Molecular assay for (rpoB) 36 Any No Unit 48176-2 Mycobacterium tuberculosis PrThr Pt XXX Ord Probe.am Mycobacterium tuberculosis rifampin resistance (rpoB) gene 3.0 3.0 - Changed LOINC property to 'ACnc' gene mutations rifampin resistance (rpoB) gene p.tar [Presence] by Probe and target amplification method 1.0 - Added by PUTS project

Measles virus IgG For qualitative reporting 17 Blood/Serum No Unit 20479-2 Measles virus Ab.IgG PrThr Pt Ser Ord Measles virus IgG Ab [Presence] in Serum 3.0 3.0 - Change preferred term from 'Measles IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Measles virus IgG For quantitative reporting 18 Blood/Serum titre 22502-9 Measles virus Ab.IgG Titr Pt Ser Qn Measles virus IgG Ab [Titer] in Serum 3.0 3.0 - Change preferred term from 'Measles IgG Ab' in titres 1.0 - Added by PUTS project

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U Measles virus IgG For quantitative reporting 18 Blood/Serum IU/mL [IU]/mL 7962-4 Measles virus Ab.IgG ACnc Pt Ser Qn Measles virus IgG Ab [Units/volume] in Serum 3.0 3.0 - Change preferred term from 'Measles IgG Ab' in units/mL 1.0 - Added by PUTS project Measles virus IgM For qualitative reporting 17 Blood/Serum No Unit 21503-8 Measles virus Ab.IgM PrThr Pt Ser Ord Measles virus IgM Ab [Presence] in Serum 3.0 3.0 - Change preferred term from 'Measles IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Measles virus IgM 17 Blood/Serum titre 22506-0 Measles virus Ab.IgM Titr Pt Ser Qn Measles virus IgM Ab [Titer] in Serum 3.0 3.0 - Change preferred term from 'Measles IgM Ab' 1.0 - Added by PUTS project Measles virus total Ab 22 Blood/Serum titre 22499-8 Measles virus Ab Titr Pt Ser Qn Measles virus Ab [Titer] in Serum 3.0 3.0 - Change preferred term from 'Measles Total Ab' 1.0 - Added by PUTS project Measles virus total Ab For qualitative reporting 22 Blood/Serum No Unit 46197-0 Measles virus Ab PrThr Pt Ser Ord Measles virus Ab [Presence] in Serum 3.0 3.0 - Change preferred term from 'Measles Total Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Measles virus RNA 17 Any No Unit 48508-6 Measles virus RNA PrThr Pt XXX Ord Probe.am Measles virus RNA [Presence] in Unspecified specimen by Probe and 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar target amplification method 1.0 - Added by PUTS project Methicillin resistant Staphylococcus MRSA, MRSA DNA Molecular assays detecting 47 Any No Unit 35492-8 Staphylococcus PrThr Pt XXX Ord Probe.am Methicillin resistant Staphylococcus aureus (MRSA) DNA [Presence] 3.0 3.0 - Changed LOINC property to 'ACnc' aureus DNA mecA / nuc gene aureus.methicillin resistant DNA p.tar by Probe and target amplification method 1.0 - Added by PUTS project

Mumps virus IgG For qualitative reporting 15 Blood/Serum No Unit 22415-4 Mumps virus Ab.IgG PrThr Pt Ser Ord Mumps virus IgG Ab [Presence] in Serum 3.0 3.0 - Change preferred term from 'Mumps IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Mumps virus IgG For quantitative reporting 15 Blood/Serum titre 22417-0 Mumps virus Ab.IgG Titr Pt Ser Qn Mumps virus IgG Ab [Titer] in Serum 3.0 3.0 - Change preferred term from 'Mumps IgG Ab' in titres 1.0 - Added by PUTS project Mumps virus IgG For quantitative reporting 15 Blood/Serum U/mL U/mL 7966-5 Mumps virus Ab.IgG ACnc Pt Ser Qn Mumps virus IgG Ab [Units/volume] in Serum 3.0 3.0 - Change preferred term from 'Mumps IgG Ab' in units/mL 1.0 - Added by PUTS project Mumps virus IgG CSF 19 CSF No Unit 39011-2 Mumps virus Ab.IgG PrThr Pt CSF Ord Mumps virus IgG Ab [Presence] in Cerebral spinal fluid 3.0 3.0 - Change preferred term from 'Mumps IgG Ab CSF'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Mumps virus IgM For qualitative reporting 15 Blood/Serum No Unit 22418-8 Mumps virus Ab.IgM PrThr Pt Ser Ord Mumps virus IgM Ab [Presence] in Serum 3.0 3.0 - Change preferred term from 'Mumps IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Mumps virus IgM 15 Blood/Serum titre 22420-4 Mumps virus Ab.IgM Titr Pt Ser Qn Mumps virus IgM Ab [Titer] in Serum 3.0 3.0 - Change preferred term from 'Mumps IgM Ab' 1.0 - Added by PUTS project Mumps virus IgM CSF 19 CSF No Unit 41131-4 Mumps virus Ab.IgM PrThr Pt CSF Ord Mumps virus IgM Ab [Presence] in Cerebral spinal fluid 3.0 3.0 - Change preferred term from 'Mumps IgM Ab CSF'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Mumps virus total Ab 20 Blood/Serum titre 22414-7 Mumps virus Ab Titr Pt Ser Qn Mumps virus Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Mumps Total Ab ' 1.0 - Added by PUTS project Mumps virus total Ab For qualitative reporting 20 Blood/Serum No Unit 31503-6 Mumps virus Ab PrThr Pt Ser Ord Mumps virus Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Mumps Total Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Mumps virus total Ab CSF 24 CSF U/mL U/mL 17292-4 Mumps virus Ab ACnc Pt CSF Qn Mumps virus Ab [Units/volume] in Cerebral spinal fluid 3.0 3.0 - Changed preferred term from 'Mumps Total Ab CSF' 1.0 - Added by PUTS project Murray Valley encephalitis virus IgG For qualitative reporting 36 Blood/Serum No Unit 81111-7 Murray Valley encephalitis virus PrThr Pt Ser Ord Murray Valley encephalitis virus IgG Ab [Presence] in Serum 3.0 3.0 - Change preferred term from 'Murray Valley encephalitis virus Ab IgG'; Added new LOINC code Ab.IgG Murray Valley encephalitis virus IgG 36 Blood/Serum titre 81112-5 Murray Valley encephalitis virus Titr Pt Ser Qn Murray Valley encephalitis virus IgG Ab [Titer] in Serum 3.0 3.0 - Change preferred term from 'Murray Valley encephalitis virus Ab IgG'; Added new LOINC code Ab.IgG 1.0 - Added by PUTS project

Murray Valley encephalitis virus IgM For qualitative reporting 36 Blood/Serum No Unit 81113-3 Murray Valley encephalitis virus PrThr Pt Ser Ord Murray Valley encephalitis virus IgM Ab [Presence] in Serum 3.0 3.0 - Change preferred term from 'Murray Valley encephalitis virus Ab IgM'; Added new LOINC code Ab.IgM 1.0 - Added by PUTS project

Murray Valley encephalitis virus IgM 36 Blood/Serum titre 81114-1 Murray Valley encephalitis virus Titr Pt Ser Qn Murray Valley encephalitis virus IgM Ab [Titer] in Serum 3.0 3.0 - Change preferred term from 'Murray Valley encephalitis virus Ab IgM'; Added new LOINC code Ab.IgM Murray Valley encephalitis virus RNA 36 Any No Unit 81651-2 Murray Valley Encephalitis virus PrThr Pt XXX Ord Probe.am Murray Valley encephalitis virus RNA [Presence] in Unspecified 3.0 3.0 - Added synonym; Added new LOINC code RNA p.tar specimen by Probe and target amplification method 1.0 - Added by PUTS project

Murray Valley encephalitis virus total 41 Blood/Serum No Unit 81121-6 Murray Valley encephalitis virus PrThr Pt Ser Ord Murray Valley encephalitis virus Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Murray Valley encephalitis virus Total Ab'; Added new LOINC Ab Ab code Murray Valley encephalitis virus total 41 Blood/Serum titre 81115-8 Murray Valley encephalitis virus Titr Pt Ser Qn Murray Valley encephalitis virus Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Murray Valley encephalitis virus Total Ab'; Added new LOINC Ab Ab code Mycobacterium avium complex rRNA 32 Any No Unit 20463-6 Mycobacterium avium complex PrThr Pt XXX Ord Probe.am Mycobacterium avium complex rRNA [Presence] in Unspecified 3.0 3.0 - Changed LOINC property to 'ACnc' rRNA p.tar specimen by Probe and target amplification method 1.0 - Added by PUTS project

Mycobacterium tuberculosis DNA 30 Any No Unit 38379-4 Mycobacterium tuberculosis PrThr Pt XXX Ord Probe.am Mycobacterium tuberculosis complex DNA [Presence] in Unspecified 3.0 3.0 - Changed LOINC property to 'ACnc' complex DNA p.tar specimen by Probe and target amplification method 1.0 - Added by PUTS project

Mycobacterium tuberculosis rRNA 31 Any No Unit 48174-7 Mycobacterium tuberculosis PrThr Pt XXX Ord Probe.am Mycobacterium tuberculosis complex rRNA [Presence] in Unspecified 3.0 3.0 - Changed LOINC property to 'ACnc' complex rRNA p.tar specimen by Probe and target amplification method 1.0 - Added by PUTS project

Mycoplasma genitalium DNA 25 Any No Unit 69935-5 Mycoplasma genitalium DNA PrThr Pt XXX Ord Probe.am Mycoplasma genitalium DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property from 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project Mycoplasma pneumoniae IgA 26 Blood/Serum No Unit 31515-0 Mycoplasma pneumoniae PrThr Pt Ser Ord Mycoplasma pneumoniae IgA Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Mycoplasma IgA Ab'; changed LOINC property from 'ACnc' Ab.IgA 1.0 - Added by PUTS project

Mycoplasma pneumoniae IgG For qualitative reporting 26 Blood/Serum No Unit 46198-8 Mycoplasma pneumoniae PrThr Pt Ser Ord Mycoplasma pneumoniae IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Mycoplasma IgG Ab'; changed LOINC property from 'ACnc' Ab.IgG 1.0 - Added by PUTS project

Mycoplasma pneumoniae IgG For quantitative reporting 25 Blood/Serum titre 22426-1 Mycoplasma pneumoniae Titr Pt Ser Qn Mycoplasma pneumoniae IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Mycoplasma IgG Ab' in titres Ab.IgG 1.0 - Added by PUTS project Mycoplasma pneumoniae IgG For quantitative reporting 25 Blood/Serum U/mL U/mL 7970-7 Mycoplasma pneumoniae ACnc Pt Ser Qn Mycoplasma pneumoniae IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Mycoplasma IgG Ab' in units/mL Ab.IgG 1.0 - Added by PUTS project Mycoplasma pneumoniae IgM 26 Blood/Serum No Unit 21406-4 Mycoplasma pneumoniae PrThr Pt Ser Ord Mycoplasma pneumoniae IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Mycoplasma IgM Ab'; changed LOINC property from 'ACnc' Ab.IgM 1.0 - Added by PUTS project

Mycoplasma pneumoniae DNA 25 Any No Unit 29257-3 Mycoplasma pneumoniae DNA PrThr Pt XXX Ord Probe.am Mycoplasma pneumoniae DNA [Presence] in Unspecified specimen 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar by Probe and target amplification method 1.0 - Added by PUTS project Mycoplasma pneumoniae total Ab 30 Blood/Serum titre 22425-3 Mycoplasma pneumoniae Ab Titr Pt Ser Qn Mycoplasma pneumoniae Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Mycoplasma Total Ab' 1.0 - Added by PUTS project Neisseria gonorrhoeae DNA 25 Any No Unit 24111-7 Neisseria gonorrhoeae DNA PrThr Pt XXX Ord Probe.am Neisseria gonorrhoeae DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project Neisseria gonorrhoeae RNA 25 Any No Unit 43305-2 Neisseria gonorrhoeae rRNA PrThr Pt XXX Ord Probe.am Neisseria gonorrhoeae rRNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project Neisseria meningitidis DNA 26 Any No Unit 49671-1 Neisseria meningitidis DNA PrThr Pt XXX Ord Probe.am Neisseria meningitidis DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U Neisseria meningitidis serogroup DNA 36 Any No Unit 71788-4 Neisseria meningitidis Prid Pt XXX Nom Probe.am Neisseria meningitidis serogroup DNA [Identifier] in Unspecified 1.0 serogroup DNA p.tar specimen by Probe and target amplification method

O.tsutsugamushi scrub typhus total 37 Blood/Serum titre 22485-7 Orientia tsutsugamushi Ab Titr Pt Ser Qn Orientia tsutsugamushi Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'O.tsutsugamushi Scrub Typhus total Ab' Ab 1.0 - Added by PUTS project Parvovirus B19 DNA 18 Any No Unit 9571-1 Parvovirus B19 DNA PrThr Pt XXX Ord Probe.am Parvovirus B19 DNA [Presence] in Unspecified specimen by Probe 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar and target amplification method 1.0 - Added by PUTS project Parvovirus B19 IgG 18 Blood/Serum titre 25630-5 Parvovirus B19 Ab.IgG Titr Pt Ser Qn Parvovirus B19 IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Parvovirus IgG Ab' 1.0 - Added by PUTS project Parvovirus B19 IgG For qualitative reporting 18 Blood/Serum No Unit 29675-6 Parvovirus B19 Ab.IgG PrThr Pt Ser Ord Parvovirus B19 IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Parvovirus IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Parvovirus B19 IgM 18 Blood/Serum titre 25631-3 Parvovirus B19 Ab.IgM Titr Pt Ser Qn Parvovirus B19 IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Parvovirus IgM Ab' 1.0 - Added by PUTS project Parvovirus B19 IgM For qualitative reporting 18 Blood/Serum No Unit 7981-4 Parvovirus B19 Ab.IgM PrThr Pt Ser Ord Parvovirus B19 IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Parvovirus IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Pneumocystis jiroveci DNA For qualitative reporting 25 Any No Unit 6521-9 Pneumocystis jiroveci DNA PrThr Pt XXX Ord Probe.am Pneumocystis jiroveci DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project Pneumocystis jiroveci DNA For quantitative reporting 25 Any copies/mL {copies}/mL 49441-9 Pneumocystis jiroveci DNA NCnc Pt XXX Qn Probe.am Pneumocystis jiroveci DNA [#/volume] in Unspecified specimen by 1.0 with copies/mL p.tar Probe and target amplification method

Q fever DNA 11 Any No Unit 23024-3 Coxiella burnetii DNA PrThr Pt XXX Ord Probe.am Coxiella burnetii DNA [Presence] in Unspecified specimen by Probe 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar and target amplification method 1.0 - Added by PUTS project Q fever IgG For quantitative reporting 12 Blood/Serum U/mL U/mL 16677-7 Coxiella burnetii Ab.IgG ACnc Pt Ser Qn Coxiella burnetii IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Q fever IgG Ab' in units/mL 1.0 - Added by PUTS project Q fever IgG For quantitative reporting 12 Blood/Serum titre 25335-1 Coxiella burnetii Ab.IgG Titr Pt Ser Qn Coxiella burnetii IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Q fever IgG Ab' in titres 1.0 - Added by PUTS project Q fever IgG For qualitative reporting 11 Blood/Serum No Unit 30212-5 Coxiella burnetii Ab.IgG PrThr Pt Ser Ord Coxiella burnetii IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Q fever IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Q fever IgM For quantitative reporting 11 Blood/Serum U/mL U/mL 16678-5 Coxiella burnetii Ab.IgM ACnc Pt Ser Qn Coxiella burnetii IgM Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Q fever IgM Ab' in units/mL 1.0 - Added by PUTS project Q fever IgM For quantitative reporting 11 Blood/Serum titre 25336-9 Coxiella burnetii Ab.IgM Titr Pt Ser Qn Coxiella burnetii IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Q fever IgM Ab' in titres 1.0 - Added by PUTS project Q fever IgM For qualitative reporting 11 Blood/Serum No Unit 30213-3 Coxiella burnetii Ab.IgM PrThr Pt Ser Ord Coxiella burnetii IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Q fever IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Q fever Phase 1 IgA 19 Blood/Serum titre 9706-3 Coxiella burnetii phase 1 Ab.IgA Titr Pt Ser Qn Coxiella burnetii phase 1 IgA Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Q fever Phase 1 IgA Ab' 1.0 - Added by PUTS project Q fever Phase 1 IgG 19 Blood/Serum titre 9708-9 Coxiella burnetii phase 1 Ab.IgG Titr Pt Ser Qn Coxiella burnetii phase 1 IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Q fever Phase 1 IgG Ab' 1.0 - Added by PUTS project Q fever Phase 1 IgM 19 Blood/Serum titre 9710-5 Coxiella burnetii phase 1 Ab.IgM Titr Pt Ser Qn Coxiella burnetii phase 1 IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Q fever Phase 1 IgM Ab' 1.0 - Added by PUTS project Q fever Phase 1 total Ab 24 Blood/Serum titre 43050-4 Coxiella burnetii phase 1 Ab Titr Pt Ser Qn Coxiella burnetii phase 1 Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Q fever Phase 1 Total' 1.0 - Added by PUTS project Q fever Phase 2 IgA 19 Blood/Serum titre 9707-1 Coxiella burnetii phase 2 Ab.IgA Titr Pt Ser Qn Coxiella burnetii phase 2 IgA Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Q fever Phase 2 IgA Ab' 1.0 - Added by PUTS project Q fever Phase 2 IgG 19 Blood/Serum titre 9709-7 Coxiella burnetii phase 2 Ab.IgG Titr Pt Ser Qn Coxiella burnetii phase 2 IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Q fever Phase 2 IgG Ab' 1.0 - Added by PUTS project Q fever Phase 2 IgM 19 Blood/Serum titre 9711-3 Coxiella burnetii phase 2 Ab.IgM Titr Pt Ser Qn Coxiella burnetii phase 2 IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Q fever Phase 2 IgM Ab' 1.0 - Added by PUTS project Q fever Phase 2 total Ab 24 Blood/Serum titre 38389-3 Coxiella burnetii phase 2 Ab Titr Pt Ser Qn Coxiella burnetii phase 2 Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Q fever Phase 2 Total' 1.0 - Added by PUTS project Q fever total Ab 16 Blood/Serum titre 22211-7 Coxiella burnetii Ab Titr Pt Ser Qn Coxiella burnetii Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Q fever Total Ab' 2.1 - Changed preferred term from 'Q fever Total' Q fever total Ab For qualitative reporting 16 Blood/Serum No Unit 23020-1 Coxiella burnetii Ab PrThr Pt Ser Ord Coxiella burnetii Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Q fever Total Ab'; changed LOINC property from 'ACnc' 2.1 - Changed preferred term from 'Q fever Total'

Rickettsia australis total Ab 29 Blood/Serum titre 29668-1 Rickettsia australis Ab Titr Pt Ser Qn Rickettsia australis Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Rickettsia australis Total Ab' 1.0 - Added by PUTS project Rickettsia conorii IgG 23 Blood/Serum titre 21492-4 Rickettsia conorii Ab.IgG Titr Pt Ser Qn Rickettsia conorii IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Rickettsia conorii IgG Ab' 1.0 - Added by PUTS project Rickettsia conorii IgM 23 Blood/Serum titre 21493-2 Rickettsia conorii Ab.IgM Titr Pt Ser Qn Rickettsia conorii IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Rickettsia conorii IgM Ab' 1.0 - Added by PUTS project

Rickettsia conorii total Ab 28 Blood/Serum titre 29678-0 Rickettsia conorii Ab Titr Pt Ser Qn Rickettsia conorii Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Rickettsia conorii Total Ab' 1.0 - Added by PUTS project Rickettsia prowazekii IgG 25 Blood/Serum titre 25603-2 Rickettsia prowazekii Ab.IgG Titr Pt Ser Qn Rickettsia prowazekii IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Rickettsia prowazekii IgG Ab' 1.0 - Added by PUTS project Rickettsia prowazekii IgM 25 Blood/Serum titre 25604-0 Rickettsia prowazekii Ab.IgM Titr Pt Ser Qn Rickettsia prowazekii IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Rickettsia prowazekii IgM Ab' 1.0 - Added by PUTS project Rickettsia prowazekii total Ab 30 Blood/Serum titre 29682-2 Rickettsia prowazekii Ab Titr Pt Ser Qn Rickettsia prowazekii Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Rickettsia prowazekii Total Ab' 1.0 - Added by PUTS project Rickettsia rickettsii total Ab 31 Blood/Serum titre 29737-4 Rickettsia rickettsii Ab Titr Pt Ser Qn Rickettsia rickettsii Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Rickettsia rickettsii Total Ab' 1.0 - Added by PUTS project Rickettsia typhi IgG 20 Blood/Serum titre 22489-9 Rickettsia typhi Ab.IgG Titr Pt Ser Qn Rickettsia typhi IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Rickettsia typhi IgG Ab' 1.0 - Added by PUTS project Rickettsia typhi IgM 20 Blood/Serum titre 22490-7 Rickettsia typhi Ab.IgM Titr Pt Ser Qn Rickettsia typhi IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Rickettsia typhi IgM Ab' 1.0 - Added by PUTS project Rickettsia typhi total Ab 25 Blood/Serum titre 29684-8 Rickettsia typhi Ab Titr Pt Ser Qn Rickettsia typhi Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Rickettsia typhi Total Ab' 1.0 - Added by PUTS project Ross River virus IgG 20 Blood/Serum No Unit 31614-1 Ross river virus Ab.IgG PrThr Pt Ser Ord Ross river virus IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Ross River virus IgG Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Ross River virus IgM 20 Blood/Serum No Unit 31615-8 Ross river virus Ab.IgM PrThr Pt Ser Ord Ross river virus IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Ross River virus IgM Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Ross River virus RNA 20 Any No Unit 81117-4 Ross river virus RNA PrThr Pt Ser Ord Probe.am Ross River virus RNA [Presence] in Serum by Probe and target 3.0 3.0 - Added synonym; Added new LOINC code p.tar amplification method 1.0 - Added by PUTS project

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U Ross River virus total Ab 25 Blood/Serum No Unit 26672-6 Ross river virus Ab PrThr Pt Ser Ord Ross river virus Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Ross River virus Total Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Rotavirus Ag stool For qualitative reporting 18 Stool No Unit 5879-2 Rotavirus Ag PrThr Pt Stool Ord Aggl Rotavirus Ag [Presence] in Stool by Agglutination 3.0 3.0 - Changed LOINC property to 'ACnc' with agglutination assays 1.0 - Added by PUTS project

Rotavirus Ag stool For qualitative reporting 18 Stool 5880-0 Rotavirus Ag PrThr Pt Stool Ord IA Rotavirus Ag [Presence] in Stool by Immunoassay 3.0 3.0 - Changed Property field from Acnc; Changed Method from EIA with immuno assays 1.0 - Added by PUTS project Rotavirus RNA 13 Any No Unit 62859-4 Rotavirus RNA PrThr Pt XXX Ord Probe.am Rotavirus RNA [Presence] in Unspecified specimen by Probe and 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar target amplification method 1.0 - Added by PUTS project RPR RPR 3 Blood/Serum No Unit 20507-0 Reagin Ab PrThr Pt Ser Ord RPR Reagin Ab [Presence] in Serum by RPR 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project RPR RPR 3 Blood/Serum titre 31147-2 Reagin Ab Titr Pt Ser Qn RPR Reagin Ab [Titer] in Serum by RPR 1.0 RSV Ag ICT For qualitative reporting 10 Any No Unit 31950-9 Respiratory syncytial virus Ag PrThr Pt XXX Ord Respiratory syncytial virus Ag [Presence] in Unspecified specimen 3.0 3.0 - Changed LOINC property to 'ACnc' with 1.0 - Added by PUTS project immunochromatographic test RSV Ag IFA For qualitative reporting 10 Any No Unit 5877-6 Respiratory syncytial virus Ag PrThr Pt XXX Ord IF Respiratory syncytial virus Ag [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc' with immunofluorescence Immunofluorescence 1.0 - Added by PUTS project method

Rubella virus IgG For qualitative reporting 17 Blood/Serum No Unit 25514-1 Rubella virus Ab.IgG PrThr Pt Ser Ord Rubella virus IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Rubella IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Rubella virus IgG 17 Blood/Serum IU/mL [IU]/mL 8014-3 Rubella virus Ab.IgG ACnc Pt Ser Qn Rubella virus IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Rubella IgG Ab' 1.0 - Added by PUTS project Rubella virus IgG avidity 25 Blood/Serum % % 52986-7 Rubella virus Ab.IgG avidity Ratio Pt Ser Qn IA Rubella virus IgG Ab avidity [Ratio] in Serum by Immunoassay 3.0 3.0 - Changed preferred term from 'Rubella Ab IgG avidity'; Changed Method from EIA 1.0 - Added by PUTS project Rubella virus IgM 17 Blood/Serum No Unit 31616-6 Rubella virus Ab.IgM PrThr Pt Ser Ord Rubella virus IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Rubella IgM Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Rubella virus total Ab 22 Blood/Serum No Unit 22496-4 Rubella virus Ab PrThr Pt Ser Ord Rubella virus Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Rubella Total Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Salmonella paratyphi AH Ab 26 Blood/Serum titre 21511-1 Salmonella paratyphi A H Ab Titr Pt Ser Qn Aggl Salmonella paratyphi A H Ab [Titer] in Serum by Agglutination 1.0 Salmonella paratyphi AO Ab 26 Blood/Serum titre 33470-6 Salmonella paratyphi A O Ab Titr Pt Ser Qn Aggl Salmonella paratyphi A O Ab [Titer] in Serum by Agglutination 1.0 Salmonella paratyphi BH Ab 26 Blood/Serum titre 21513-7 Salmonella paratyphi B H Ab Titr Pt Ser Qn Aggl Salmonella paratyphi B H Ab [Titer] in Serum by Agglutination 1.0 Salmonella paratyphi BO Ab 26 Blood/Serum titre 27938-0 Salmonella paratyphi B O Ab Titr Pt Ser Qn Aggl Salmonella paratyphi B O Ab [Titer] in Serum by Agglutination 1.0 Salmonella typhi H Ab 21 Blood/Serum titre 34371-5 Salmonella typhi H Ab Titr Pt Ser Qn Aggl Salmonella typhi H Ab [Titer] in Serum by Agglutination 1.0 Salmonella typhi O Ab 21 Blood/Serum titre 34372-3 Salmonella typhi O Ab Titr Pt Ser Qn Aggl Salmonella typhi O Ab [Titer] in Serum by Agglutination 1.0 Schistosoma IgG 15 Blood/Serum U/mL U/mL 13277-9 Schistosoma sp Ab.IgG ACnc Pt Ser Qn Schistosoma sp IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Schistosoma IgG Ab' 1.0 - Added by PUTS project Schistosoma IgG 15 Blood/Serum No Unit 33317-9 Schistosoma sp Ab.IgG PrThr Pt Ser Ord Schistosoma sp IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Schistosoma IgG Ab'; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project

Schistosoma total Ab 20 Blood/Serum titre 34594-2 Schistosoma sp Ab Titr Pt Ser Qn Schistosoma sp Ab [Titer] in Serum 1.0 Sindbis virus total Ab 22 Blood/Serum titre 42954-8 Sindbis virus Ab Titr Pt Ser Qn Sindbis virus Ab [Titer] in Serum 1.0 Spotted fever group IgG 23 Blood/Serum titre 22477-4 Rickettsia spotted fever group Titr Pt Ser Qn Rickettsia spotted fever group IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Spotted fever group IgG Ab' Ab.IgG 1.0 - Added by PUTS project Spotted fever group IgM 24 Blood/Serum titre 22479-0 Rickettsia spotted fever group Titr Pt Ser Qn Rickettsia spotted fever group IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Spotted fever group IgM Ab' Ab.IgM 1.0 - Added by PUTS project Spotted fever group total Ab 28 Blood/Serum titre 22475-8 Rickettsia spotted fever group Titr Pt Ser Qn Rickettsia spotted fever group Ab [Titer] in Serum 1.0 Ab Streptococcus AntiDNase B Ab 28 Blood/Serum titre 14207-5 DNAse B Ab.Streptococcal Titr Pt Ser Qn Streptococcal DNAse B [Titer] in Serum 1.0 Streptococcus AntiDNase B Ab 28 Blood/Serum U/mL U/mL 5133-4 DNAse B Ab.Streptococcal ACnc Pt Ser Qn Streptococcal DNAse B [Units/volume] in Serum 1.0 Streptococcus O Ab ASOT For quantitative reporting 18 Blood/Serum IU/mL [IU]/mL 5370-2 Streptolysin O Ab ACnc Pt Ser/Plas Qn Streptolysin O Ab [Units/volume] in Serum or Plasma 1.0 in units/mL Streptococcus O Ab ASOT For qualitative reporting 18 Blood/Serum No Unit 9788-1 Streptolysin O Ab PrThr Pt Ser Ord Streptolysin O Ab [Presence] in Serum 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project Streptococcus O Ab ASOT For quantitative reporting 19 Blood/Serum titre 22568-0 Streptolysin O Ab Titr Pt Ser Qn Streptolysin O Ab [Titer] in Serum 1.0 in titres Toxoplasma gondii IgA 22 Blood/Serum U/mL U/mL 22578-9 Toxoplasma gondii Ab.IgA ACnc Pt Ser Qn Toxoplasma gondii IgA Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from ' Toxoplasma gondii IgA Ab' 2.0 - Changed preferred name from 'Toxoplasmosis'. Toxoplasma gondii IgA For qualitative reporting 22 Blood/Serum No Unit 33459-9 Toxoplasma gondii Ab.IgA PrThr Pt Ser Ord Toxoplasma gondii IgA Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Toxoplasma gondii IgA Ab'; changed LOINC property from 'ACnc' 2.0 - Changed preferred name from 'Toxoplasmosis'. Toxoplasma gondii IgG 22 Blood/Serum No Unit 22580-5 Toxoplasma gondii Ab.IgG PrThr Pt Ser Ord Toxoplasma gondii IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Toxoplasma gondii IgG Ab'; changed LOINC property from 'ACnc' 2.0 - Changed preferred name from 'Toxoplasmosis'. Toxoplasma gondii IgG For quantitative reporting 21 Blood/Serum titre 22582-1 Toxoplasma gondii Ab.IgG Titr Pt Ser Qn Toxoplasma gondii IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Toxoplasma gondii IgG Ab'2 in titres 2.0 - Changed preferred name from 'Toxoplasmosis'. Toxoplasma gondii IgG For quantitative reporting 21 Blood/Serum IU/mL [IU]/mL 8039-0 Toxoplasma gondii Ab.IgG ACnc Pt Ser Qn Toxoplasma gondii IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Toxoplasma gondii IgG Ab' in units/mL 2.0 - Changed preferred name from 'Toxoplasmosis'. Toxoplasma gondii IgG avidity 29 Blood/Serum % % 56990-5 Toxoplasma gondii Ab.IgG Ratio Pt Ser Qn IA Toxoplasma gondii IgG Ab avidity [Ratio] in Serum by Immunoassay 3.0 3.0 - Changed preferred term from 'Toxoplasma gondii Ab IgG avidity'; Changed Method field from avidity EIA 1.0 - Added by PUTS project Toxoplasma gondii IgM For qualitative reporting 22 Blood/Serum No Unit 25542-2 Toxoplasma gondii Ab.IgM PrThr Pt Ser Ord Toxoplasma gondii IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Toxoplasma gondii IgM Ab'; changed LOINC property from 'ACnc' 2.0 - Changed preferred name from 'Toxoplasmosis'. Toxoplasma gondii IgM 22 Blood/Serum U/mL U/mL 8040-8 Toxoplasma gondii Ab.IgM ACnc Pt Ser Qn Toxoplasma gondii IgM Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Toxoplasma gondii IgM Ab' 2.0 - Changed preferred name from 'Toxoplasmosis'. Treponema pallidum Ab All agglutination tests 21 Blood/Serum No Unit 24312-1 Treponema pallidum Ab PrThr Pt Ser Ord Aggl Treponema pallidum Ab [Presence] in Serum by Agglutination 3.0 3.0 - Changed LOINC property to 'ACnc'; added 'Syphillis' as synonym including TPHA 1.0 - Added by PUTS project Treponema pallidum Ab FTA 25 Blood/Serum No Unit 5393-4 Treponema pallidum Ab PrThr Pt Ser Ord IF Treponema pallidum Ab [Presence] in Serum by Immunofluorescence 3.0 3.0 - Changed preferred term from 'Treponema pallidum FTA Ab'; changed LOINC property from 'ACnc'; added 'Syphillis' as synonym 1.0 - Added by PUTS project Treponema pallidum Ab immunoblot 33 Blood/Serum No Unit 57032-5 Treponema pallidum Ab PrThr Pt Ser Ord IB Treponema pallidum Ab [Presence] in Serum by Immunoblot (IB) 3.0 3.0 - Changed preferred term from 'Treponema pallidum immunoblot'; changed LOINC property from 'ACnc'; added 'Syphillis' as synonym 1.0 - Added by PUTS project Treponema pallidum DNA 22 Any No Unit 41163-7 Treponema pallidum DNA PrThr Pt XXX Ord Probe.am Treponema pallidum DNA [Presence] in Unspecified specimen by 3.0 3.0 - Changed LOINC property to 'ACnc'; added 'Syphillis' as synonym p.tar Probe and target amplification method 1.0 - Added by PUTS project

RCPA Preferred term RCPA Synonyms Usage guidance Length Specimen DUnit UCUM LOINC Component Property Timing System Scale Method LongName Version History U Treponema pallidum IgM 22 Blood/Serum No Unit 6562-3 Treponema pallidum Ab.IgM PrThr Pt Ser Ord Treponema pallidum IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Treponema pallidum IgM Ab'; changed LOINC property from 'ACnc'; added 'Syphillis' as synonym 1.0 - Added by PUTS project Treponema pallidum IgM FTA 26 Blood/Serum No Unit 17729-5 Treponema pallidum Ab.IgM PrThr Pt Ser Ord IF Treponema pallidum IgM Ab [Presence] in Serum by 3.0 3.0 - Changed preferred term from 'Treponema pallidum FTA IgM Ab'; changed LOINC property Immunofluorescence from 'ACnc'; added 'Syphillis' as synonym 1.0 - Added by PUTS project Treponema pallidum total Ab 27 Blood/Serum No Unit 22587-0 Treponema pallidum Ab PrThr Pt Ser Ord Treponema pallidum Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Treponema pallidum Total Ab'; changed LOINC property from 'ACnc'; added 'Syphillis' as synonym 1.0 - Added by PUTS project Typhus group IgG 16 Blood/Serum titre 22493-1 Rickettsia typhus group Ab.IgG Titr Pt Ser Qn Rickettsia typhus group IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Typhus group IgG Ab' 1.0 - Added by PUTS project Typhus group IgM 16 Blood/Serum titre 22494-9 Rickettsia typhus group Ab.IgM Titr Pt Ser Qn Rickettsia typhus group IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Typhus group IgM Ab' 1.0 - Added by PUTS project Typhus group total Ab 21 Blood/Serum titre 22492-3 Rickettsia typhus group Ab Titr Pt Ser Qn Rickettsia typhus group Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Typhus group Total Ab' 1.0 - Added by PUTS project Vancomycin resistance vanA gene Use for to test fro 31 Any No Unit 48814-8 Bacterial vancomycin resistance PrThr Pt XXX Ord Probe.am Bacterial vancomycin resistance (vanA) gene [Presence] by Probe and 3.0 3.0 - Changed LOINC property to 'ACnc' vancomycin resistant (vanA) gene p.tar target amplification method 1.0 - Added by PUTS project Enterococcus species Vancomycin resistance vanA, vanB Use for to test fro 38 Any No Unit 62261-3 Bacterial vancomycin resistance PrThr Pt XXX Ord Probe.am Bacterial vancomycin resistance (vanA , vanB) genes [Presence] by 3.0 3.0 - Changed LOINC property to 'ACnc'; Changed Component field from Bacterial vancomycin genes vancomycin resistant (vanA+vanB) genes p.tar Probe and target amplification method resistance (vanA, vanB) genes Enterococcus species 1.0 - Added by PUTS project Varicella zoster virus IgG VZV IgG For qualitative reporting 26 Blood/Serum No Unit 19162-7 Varicella zoster virus Ab.IgG PrThr Pt Ser Ord Varicella zoster virus IgG Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Varicella Zoster IgG Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Varicella zoster virus IgG VZV IgG For quantitative reporting 26 Blood/Serum titre 22602-7 Varicella zoster virus Ab.IgG Titr Pt Ser Qn Varicella zoster virus IgG Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Varicella Zoster IgG Ab'; Added synonym in titres 1.0 - Added by PUTS project Varicella zoster virus IgG VZV IgG For quantitative reporting 26 Blood/Serum IU/mL [IU]/mL 8047-3 Varicella zoster virus Ab.IgG ACnc Pt Ser Qn Varicella zoster virus IgG Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Varicella Zoster IgG Ab'; Added synonym in units/mL 1.0 - Added by PUTS project Varicella zoster virus IgM VZV IgM For qualitative reporting 27 Blood/Serum No Unit 21597-0 Varicella zoster virus Ab.IgM PrThr Pt Ser Ord Varicella zoster virus IgM Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Varicella Zoster IgM Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Varicella zoster virus IgM VZV IgM 26 Blood/Serum titre 22606-8 Varicella zoster virus Ab.IgM Titr Pt Ser Qn Varicella zoster virus IgM Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Varicella Zoster IgM Ab'; Added synonym 1.0 - Added by PUTS project Varicella zoster virus total Ab VZV total Ab For qualitative reporting 32 Blood/Serum No Unit 22600-1 Varicella zoster virus Ab PrThr Pt Ser Ord Varicella zoster virus Ab [Presence] in Serum 3.0 3.0 - Changed preferred term from 'Varicella Zoster Total Ab'; Added synonym; changed LOINC property from 'ACnc' 1.0 - Added by PUTS project Varicella zoster virus total Ab VZV total Ab 31 Blood/Serum titre 21594-7 Varicella zoster virus Ab Titr Pt Ser Qn Varicella zoster virus Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Varicella Zoster Total Ab'; Added synonym 1.0 - Added by PUTS project Varicella zoster virus DNA VZV DNA 26 Any No Unit 11483-5 Varicella zoster virus DNA PrThr Pt XXX Ord Probe.am Varicella zoster virus DNA [Presence] in Unspecified specimen by 3.0 3.0 - Added synonym; changed LOINC property from 'ACnc' p.tar Probe and target amplification method 1.0 - Added by PUTS project VDRL CSF VDRL 8 CSF titre 31146-4 Reagin Ab Titr Pt CSF Qn VDRL Reagin Ab [Titer] in Cerebral spinal fluid by VDRL 1.0 VDRL CSF For qualitative reporting 8 CSF No Unit 5290-2 Reagin Ab PrThr Pt CSF Ord VDRL Reagin Ab [Presence] in Cerebral spinal fluid by VDRL 3.0 3.0 - Changed LOINC property to 'ACnc' 1.0 - Added by PUTS project West Nile virus RNA 19 Any No Unit 34892-0 West Nile virus RNA PrThr Pt XXX Ord Probe.am West Nile virus RNA [Presence] in Unspecified specimen by Probe 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar and target amplification method 1.0 - Added by PUTS project West Nile virus total Ab 24 Blood/Serum titre 41225-4 West Nile virus Ab Titr Pt Ser Qn West Nile virus Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'West Nile virus Total Ab' 1.0 - Added by PUTS project Yellow fever virus RNA 22 Blood/Serum No Unit 8057-2 Yellow fever virus RNA PrThr Pt Ser Ord Probe.am Yellow fever virus RNA [Presence] in Serum by Probe and target 3.0 3.0 - Changed LOINC property to 'ACnc' p.tar amplification method 1.0 - Added by PUTS project Yellow fever virus IgG 22 Blood/Serum U/mL U/mL 8055-6 Yellow fever virus Ab.IgG ACnc Pt Ser Qn Yellow fever virus Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Yellow fever virus IgG Ab' 1.0 - Added by PUTS project Yellow fever virus IgM 22 Blood/Serum U/mL U/mL 8056-4 Yellow fever virus Ab.IgM ACnc Pt Ser Qn Yellow fever virus IgM Ab [Units/volume] in Serum 3.0 3.0 - Changed preferred term from 'Yellow fever virus IgM Ab' 1.0 - Added by PUTS project Yellow fever virus total Ab 27 Blood/Serum titre 22618-3 Yellow fever virus Ab Titr Pt Ser Qn Yellow fever virus Ab [Titer] in Serum 3.0 3.0 - Changed preferred term from 'Yellow fever virus Total Ab' 1.0 - Added by PUTS project

TRIM Document #: D156351

Document History: Version Reason for Change Author Date 1.0 Initial Terminology for Microbiology: Organisms mapped to SNOMED CT, published by the Michael Legg / Dr Christiaan 12-Feb-13 RCPA Pathology Units and Terminology Standardisation Project. Swanepoel

2.0 Added Document Revision History worksheet. Donna Moore 06-Jun-14

Changed filename from "PUTS Microbiology Subset of Organisms mapped to Snomed CT " to "APUTS Microbiology Subset of Organisms mapped to Snomed CT ".

Removed columns that were used during reviewing the SNOMED codes. Removed duplicate Grimontia hollisae SNOMED: 433669003 | Grimontia hollisae |. Corrected all organisms in upper case to the standardised organism format. Changed column title from "Source Organism names provided by working group members" to "Preferred Organism name" 2.1 After public feedback and approval by PITUS steering committee the following changes were Donna Moore 30-Oct-14 made: - Correct spelling for Salmonella bongori, it now is Salmonella Bongori . - Changed SNOMED code for Bacteroides corrodens to 450602004 | Campylobacter ureolyticus | (was 36392001 | Bacteroides ureolyticus | ) - Changed SNOMED code for Cryptococcus gatti (C.neoformans var gatti) to 450862004 | cryptococcus gattii | (was 243467007 | Cryptococcus neoformans var gattii |)

- Changed SNOMED code for Coronavirus to 84101006 | human coronavirus | (was 243608008 | Coronavirus |). - Changed the preferred name for any organism where 'Virus' was in the name, it is now 'virus'. - Added Measles virus.

Please note: The PITUS steering committee held a meeting on 9 October 2014 and decided to keep the preferred name as 'Streptococcus downei ', and not change it to 'Streptococcus dolonei'.

3.0 Changes made have been recorded in 'Organisms mapped to SNOMED' tab, refer to the rows Donna Moore 16-Jan-17 marked with '3.0' in the Version field. Includes changes from public comments. Standards for Pathology Informatics in Australia (SPIA) Terminology for Microbiology: Organisms mapped to SNOMED CT

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Abiotrophia defectiva 113714003 | Abiotrophia defectiva | 1.0 Abiotrophia sp. (nutritionally variant Strep) 115161005 | Abiotrophia species | 3.0 3.0 - Changed species abbreviation in preferred name from sp; changed SNOMED code from 372391001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project

Absidia corymbifera 79354006 | Absidia corymbifera | 1.0 Absidia sp. 57145009 | Absidia species | 3.0 3.0 - Changed SNOMED code from 404226006 which is now inactive due to SNOMED policy change Acanthamoeba sp. 50875003 | Acanthamoeba species | 3.0 3.0 - Changed species abbreviation in preferred name from sp; changed SNOMED code from 372401005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Acanthocephala sp. 11950008 | Phylum Acanthocephala | 3.0 3.0 - Changed species abbreviation in preferred name from sp 1.0 - Added by PUTS project Acetobacter liquefaciens 396951004 | Acetobacter liquefaciens | 1.0 Acetobacter sp. 396949003 | Acetobacter species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 413410005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Acholeplasma laidlawii 89082003 | Acholeplasma laidlawii | 1.0 Acholeplasma sp. 84858009 | Acholeplasma species | 3.0 3.0 - Changed species abbreviation in preferred name from sp; changed SNOMED code from 131200004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Achromobacter denitrificans 413414001 | Achromobacter denitrificans | 2.0 2.0 - Changed preferred name (was ACHROMOBACTER DENITRIFICANS) 1.0 - Added by PUTS project Achromobacter piechaudii 413420000 | Achromobacter piechaudii | 1.0 Achromobacter sp. 91620006 | Achromobacter species | 3.0 3.0 - Changed SNOMED code from 413423003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Achromobacter xylosoxidans 413424009 | Achromobacter xylosoxidans | 1.0 Acidaminococcaceae 432361001 | Family Veillonellaceae | 1.0 Acidaminococcus fermentans 63005002 | Acidaminococcus fermentans | 1.0 Acidaminococcus sp. 28207003 | Acidaminococcus species | 3.0 3.0 - Changed SNOMED code from 131202007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Acid-fast bacillus 243365003 | Acid-fast bacillus | 1.0 Acidovorax konjaci 113688001 | Acidovorax konjaci | 1.0 Acidovorax sp. 115153000 | Acidovorax | 3.0 3.0 - Changed preferred name, changing 'species' to sp. 1.0 - Added by PUTS project Acinetobacter alcaligenes 7757008 | Acinetobacter | 1.0 Acinetobacter baumannii 91288006 | Acinetobacter baumannii | 1.0 Acinetobacter baumannii complex 113376007 | Acinetobacter calcoaceticus-Acinetobacter baumannii complex | 1.0

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Aerococcus christensenii 409818008 | Aerococcus christensenii | 2.0 2.0 - Changed preferred name (was AEROCOCCUS CHRISTENSENII) 1.0 - Added by PUTS project Aerococcus sanguicola 131205009 | Aerococcus sanguicola | 1.0 Aerococcus sanguinicola 427222006 | Aerococcus sanguinicola | 1.0 Aerococcus sp. 9008009 | Aerococcus species | 3.0 3.0 - Changed SNOMED code from 131206005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Aerococcus urinae 243230001 | Aerococcus urinae | 2.0 2.0 - Changed preferred name (was AEROCOCCUS URINAE) 1.0 - Added by PUTS project Aerococcus urinaehominis 409819000 | Aerococcus urinaehominis | 1.0 Aerococcus viridans 78803006 | Aerococcus viridans | 1.0 Aeromonadaceae 426010009 | Aeromonadaceae | 1.0 Aeromonas allosaccharophila 115026002 | Aeromonas allosaccharophila | 1.0 Aeromonas bestiarum 115027006 | Aeromonas bestiarum | 1.0 Aeromonas caviae 115036005 | Aeromonas punctata | 1.0 Aeromonas culicicola 425828003 | Aeromonas culicicola | 1.0 Aeromonas encheleia 115028001 | Aeromonas encheleia | 1.0 Aeromonas eucrenophila 115030004 | Aeromonas eucrenophilia | 1.0 Aeromonas hydrophila 85823000 | Aeromonas hydrophila | 1.0 Aeromonas jandaei 115034008 | Aeromonas jandei | 1.0 Aeromonas media 65192005 | Aeromonas media | 1.0 Aeromonas molluscorum 425862003 | Aeromonas molluscorum | 1.0 Aeromonas popoffii 115035009 | Aeromonas popoffii | 1.0 Aeromonas salmonicida 30334005 | Aeromonas salmonicida | 2.0 2.0 - Changed preferred name (was AEROMONAS SALMONICIDA) 1.0 - Added by PUTS project Aeromonas salmonicida achromogenes 64537004 | Aeromonas salmonicida ss. achromogenes | 1.0 Aeromonas salmonicida masoucida 51768004 | Aeromonas salmonicida ss. masoucida | 1.0 Aeromonas schubertii 115039003 | Aeromonas schubertii | 1.0 Aeromonas simiae 426333004 | Aeromonas simiae | 1.0 Aeromonas sobria 43731003 | Aeromonas sobria | 1.0 Aeromonas sp. 88529008 | Aeromonas species | 3.0 3.0 - Changed SNOMED code from 131207001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Aeromonas trota 243316008 | Aeromonas trota | 1.0 Aeromonas veronii 9281006 | Aeromonas veronii | 1.0 Aeromonas veronii bv sobria 425549009 | Aeromonas veronii biovar sobria | 1.0 Aeromonas veronii bv veronii 425796003 | Aeromonas veronii biovar veronii | 1.0 Afipia felis 114237000 | Afipia felis | 1.0 Afipia sp. 114234007 | Afipia species | 3.0 3.0 - Changed SNOMED code from 114241001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Agaricus bisporus 9804007 | Agaricus | 1.0 Agaricus campestris 73473002 | Agaricus campestris | 1.0 Aggregatibacter (Haemophilus) segnis 442651004 | Aggregatibacter segnis | 1.0 Aggregatibacter aphrophilus 442683005 | Aggregatibacter aphrophilus | 1.0 Aggregatibacterium actinomycetemcomitans 442680008 | Aggregatibacter actinomycetemcomitans | 1.0 Agrobacterium sp. (Yellow Group) 413469003 | Agrobacterium yellow group | 3.0 3.0 - Changed species abbreviation in preferred name from sp 1.0 - Added by PUTS project Agrobacterium sp. 33436009 | Agrobacterium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131208006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Agromyces mediolanus 425905003 | Agromyces mediolanus | 1.0 Ajellomycetaceae 417579002 | Ajellomycetaceae | 1.0 Alcaligenaceae 409866001 | Alcaligenaceae | 1.0 Alcaligenes baumanii 91288006 | Acinetobacter baumannii | 1.0 Alcaligenes faecalis 25223004 | Alcaligenes faecalis | 1.0 Alcaligenes faecalis subsp faecalis 424719003 | Alcaligenes faecalis ss. faecalis | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Alcaligenes johnsonii 252000 | Acinetobacter johnsonii | 1.0 Alcaligenes sp. 68571003 | Alcaligenes species | 3.0 3.0 - Changed SNOMED code from 131201000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Alcaligenes xylosoxidans subsp denitrificans Submit for New SNOMED code 3.0 3.0 - 42947002 | Alcaligenes xylosoxidans ss. denitrificans | is inactive, need to submit for a new SNOMED code 1.0 - Added by PUTS project Alloiococcus otitis 396454000 | Alloiococcus otitis | 2.0 2.0 - Changed preferred name (was ALLOIOCOCCUS OTITIS) 1.0 - Added by PUTS project Alloiococcus sp. 396453006 | Alloiococcus species | 3.0 3.0 - Changed species abbreviation in preferred name from sp 1.0 - Added by PUTS project Allomonas enterica 40822006 | Allomonas enterica | 1.0 Allomonas sp. 62281007 | Allomonas species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131209003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Alphavirus 243600001 | Alphavirus | 1.0 Alternaria alternata 36703000 | Alternaria alternata | 2.0 2.0 - Changed preferred name (was Alternara alternata) 1.0 - Added by PUTS project Amanita muscaria 56421007 | Amanita muscaria | 1.0 Amanita phalloides 18652009 | Amanita phalloides | 1.0 Amanita sp. 18555001 | Amanita | 1.0 Amycolatopsis sp. 115149002 | Amycolatopsis species | 3.0 3.0 - Changed SNOMED code from 131278007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Anaerobiospirillum sp. 55757006 | Anaerobiospirillum species | 3.0 3.0 - Changed SNOMED code from 131212000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Anaerobiospirillum succiniproducens 46934005 | Anaerobiospirillum succinoproducens | 1.0 Anaerococcus hydrogenalis 413519008 | Anaerococcus hydrogenalis | 1.0 Anaerococcus lactolyticus 413520002 | Anaerococcus lactolyticus | 1.0 Anaerococcus octavius 413521003 | Anaerococcus octavius | 1.0 Anaerococcus prevotii 413522005 | Anaerococcus prevotii | 1.0 Anaerococcus sp. 413518000 | Anaerococcus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 413523000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Anaerococcus tetradius 427220003 | Anaerococcus tetradius | 1.0 Anaerococcus vaginalis 413525007 | Anaerococcus vaginalis | 1.0 Anaerorhabdus sp. 54522000 | Anaerorhabdus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131213005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Ancyclostoma duodenale 81559006 | Ancylostoma duodenale | 1.0 Ancylistaceae 428237008 | Family Ancylistaceae | 1.0 Angiostrongylus cantonensis 48708001 | Angiostrongylus cantonensis | 1.0 Angiostrongylus costaricensis 72966005 | Angiostrongylus costaricensis | 1.0 Angiostrongylus sp. 7153002 | Angiostrongylus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 417871007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Anisakis sp. 35458008 | Anisakis species | 3.0 3.0 - Changed SNOMED code from 418007006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Aphanoascus flavescens 48136002 | Aphanoascus fulvescens | 1.0 Aphaoascus sp. 44312001 | Aphanoascus species | 1.0 Apicomplexa 106604000 | Apicomplexa | 1.0 Apophysomyces elegans 71235006 | Apophysomyces elegans | 1.0 Arachnia sp. 10549005 | Arachnia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131215003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Arcanobacterium (Actinomyces) pyogenes 258933002 | Trueperella pyogenes | 1.0 Arcanobacterium bernardiae 113429002 | Trueperella bernardiae | 3.0 3.0 - Changed SNOMED code from 113429002 as it is now inactive 1.0 - Added by PUTS project Arcanobacterium haemolyticum 704975008 | Arcanobacterium haemolyticum | 1.0 Arcanobacterium sp. 51714009 | Arcanobacterium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131216002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Arcobacter butzleri 114207009 | Arcobacter butzleri | 1.0 Arcobacter cryaerophilus 7858008 | Arcobacter cryaerophilus | 2.0 2.0 - Changed preferred name (was Arcobacter cryaerophila) 1.0 - Added by PUTS project Arcobacter nitrofrigilis 408629003 | Arcobacter nitrofigilis | 1.0 Arcobacter skirrowii 114210002 | Arcobacter skirrowii | 1.0 Arcobacter sp. 114206000 | Arcobacter species | 3.0 3.0 - Changed species abbreviation in preferred name from sp; changed SNOMED code from 131407003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project

Arenavirus 58234003 | Arenavirus | 1.0 Arthrobacter globiformis 3840003 | Arthrobacter globiformis | 1.0 Arthrobacter sp. 56214009 | Arthrobacter species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131217006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Arthrodermataceae 416959009 | Arthrodermataceae | 1.0 Arthrographis sp. 112406004 | Arthrographis species | 1.0 Ascaris lumbricoides 19061001 | Ascaris lumbricoides | 1.0 Ascaris sp. 66953006 | Ascaris species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372370009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Ascomycetes 415098006 | Ascomycota | 1.0 Aspergillus clavatus 87240002 | Aspergillus clavatus | 1.0 Aspergillus flavipes 54120001 | Aspergillus flavipes | 1.0 Aspergillus flavus 66821001 | Aspergillus flavus | 2.0 2.0 - Changed preferred name (was ASPERGILLUS FLAVUS) 1.0 - Added by PUTS project Aspergillus fumigatus 32684000 | Aspergillus fumigatus | 2.0 2.0 - Changed preferred name (was ASPERGILLUS FUMIGATUS) 1.0 - Added by PUTS project Aspergillus glaucus 19556009 | Aspergillus glaucus | 1.0 Aspergillus nidulans 60264008 | Aspergillus nidulans | 1.0 Aspergillus niger 89354002 | Aspergillus niger | 2.0 2.0 - Changed preferred name (was ASPERGILLUS NIGER) 1.0 - Added by PUTS project Aspergillus repens 30019005 | Aspergillus repens | 1.0 Aspergillus sp. 2429008 | Aspergillus species | 3.0 3.0 - Changed SNOMED code from 115994009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Aspergillus terreus 26406003 | Aspergillus terreus | 1.0 Aspergillus versicolor 48315007 | Aspergillus versicolor | 1.0 Astroviridae 424055004 | Astroviridae | 1.0 Astrovirus 33160002 | Human astrovirus | 1.0 Atopobium rimae 113632005 | Atopobium rimae | 1.0 Atopobium sp. 115136007 | Atopobium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131250006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Aureobacterium sp. 114199008 | Microbacterium species | 3.0 3.0 - Changed SNOMED code from 127543009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Aureobasidium pullulans 39129008 | Aureobasidium pullulans | 1.0 Aureobasidium sp. 34121008 | Aureobasidium species | 1.0 Avian Influenza virus, highly pathogenic 389070009 | Avian influenza virus, highly pathogenic | 2.1 2.1 - Changed preferred name (was Avian Influenza Virus, Highly Pathogenic) 1.0 - Added by PUTS project

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Borrelia burgdorferi 76327009 | Borrelia burgdorferi | 2.0 2.0 - Changed preferred name (was Borrelia burgdorferii) 1.0 - Added by PUTS project Borrelia duttonii 39709002 | Borrelia duttonii | 1.0 Borrelia hermsii 62748005 | Borrelia hermsii | 1.0 Borrelia mazzottii 3293005 | Borrelia mazzottii | 1.0 Borrelia parkeri 41704008 | Borrelia parkeri | 1.0 Borrelia recurrentis 34726005 | Borrelia recurrentis | 1.0 Borrelia sp. 112277009 | Borrelia species | 3.0 3.0 - Changed SNOMED code from 131221004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Borrelia turicatae 24986006 | Borrelia turicatae | 1.0 Borrelia venezuelensis 30765003 | Borrelia venezuelensis | 1.0 Botryodiplodia theobromae 784008 | Lasiodiplodia theobromae | 1.0 Brachybacterium sp. 413689006 | Brachybacterium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 413700000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Brachyspira aalborgi 48621001 | Brachyspira aalborgi | 1.0 Brachyspira pilosicoli 113517008 | Brachyspira pilosicoli | 1.0 Brachyspira sp. 11572003 | Brachyspira species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131228005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Branching Gram-positive bacillus 417494001 | Branching Gram-positive bacillus | 1.0 Brevibacillus (Bacillus) borstelensis 114116000 | Brevibacillus borstelensis | 1.0 Brevibacillus (Bacillus) brevis 114117009 | Brevibacillus brevis | 1.0 Brevibacillus (Bacillus) laterosporus 114121002 | Brevibacillus laterosporus | 1.0 Brevibacillus (Bacillus) macerans 114101003 | Paenibacillus macerans | 1.0 Brevibacillus (Bacillus) parabrevis 114122009 | Brevibacillus parabrevis | 1.0 Brevibacillus (Bacillus) sp. 114114002 | Brevibacillus species | 3.0 3.0 - Changed SNOMED code from 125049001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Brevibacillus centrosporus 114118004 | Brevibacillus centrosporus | 1.0 Brevibacillus choshinensis 114119007 | Brevibacillus choshinensis | 2.0 2.0 - Changed preferred name (was BREVIBACILLUS CHOSHINENSIS) 1.0 - Added by PUTS project Brevibacillus invocatus 385495009 | Brevibacillus invocatus | 1.0 Brevibacterium casei 6405003 | Brevibacterium casei | 1.0 Brevibacterium epidermidis 57301000 | Brevibacterium epidermidis | 1.0 Brevibacterium linens 112278004 | Brevibacterium linens | 1.0 Brevibacterium mcbrellneri 431099002 | Brevibacterium mcbrellneri | 1.0 Brevibacterium otitidis 113519006 | Brevibacterium otitidis | 1.0 Brevibacterium paucivorans 416223009 | Brevibacterium paucivorans | 1.0 Brevibacterium sp. 3603008 | Brevibacterium | 3.0 3.0 - Changed preferred name, changing 'species' to sp. 1.0 - Added by PUTS project Brevundimonas diminuta 113689009 | Brevundimonas diminuta | 1.0 Brevundimonas sp. 115154006 | Brevundimonas | 1.0 Brevundimonas vesicularis 113690000 | Brevundimonas vesicularis | 1.0 Brucella abortus 24224000 | Brucella abortus | 1.0 Brucella abortus strain 19 430982008 | Brucella abortus, vaccinal strain 19 | 1.0 Brucella canis 38025008 | Brucella canis | 1.0 Brucella melitensis 72829003 | Brucella melitensis | 1.0 Brucella neotomae 28461002 | Brucella neotomae | 1.0 Brucella ovis 35049005 | Brucella ovis | 1.0 Brucella sp. 26250004 | Brucella species | 3.0 3.0 - Changed SNOMED code from 116505000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Brucella suis 48317004 | Brucella suis | 1.0 Brucellaceae 116506004 | Brucellaceae | 1.0 Brugia malayi 112443002 | Brugia malayi | 1.0 Budvicia aquatica 75464008 | Budvicia aquatica | 1.0 Budvicia sp. 55851000 | Budvicia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131253008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Bulleidia extructa 413725009 | Bulleidia extructa | 1.0 Bulleidia sp. 413724008 | Bulleidia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 413727001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Burkholderia ambifaria (genomovar VII) 416467009 | Burkholderia ambifaria | 1.0 Burkholderia anthina (genomovar VIII) 417565005 | Burkholderia anthina | 2.0 2.0 - Changed preferred name (was Burkholderia anthina (genovar VIII)) 1.0 - Added by PUTS project Burkholderia caryophylli 113668000 | Burkholderia caryophylli | 1.0 Burkholderia cenocepacia (genomovar III) 416941006 | Burkholderia cenocepacia | 1.0 Burkholderia cepacia 113669008 | Burkholderia cepacia | 2.0 2.0 - Changed preferred name (was BURKHOLDERIA CEPACIA) 1.0 - Added by PUTS project Burkholderia cepacia complex 131281002 | Burkholderia cepacia complex | 2.0 2.0 - Changed preferred name (was BURKHOLDERIA CEPACIA COMPLEX) 1.0 - Added by PUTS project Burkholderia dolosa (genomovar VI) 431173006 | Burkholderia dolosa | 1.0 Burkholderia fungorum 417285005 | Burkholderia fungorum | 1.0 Burkholderia gladioli 113671008 | Burkholderia gladioli | 1.0 Burkholderia glathei 113672001 | Burkholderia glathei | 1.0 Burkholderia graminis 427474006 | Burkholderia graminis | 1.0 Burkholderia mallei 113674000 | Burkholderia mallei | 1.0 Burkholderia multivorans (genomovar II) 113675004 | Burkholderia multivorans | 1.0 Burkholderia phenazinium 431166001 | Burkholderia phenazinium | 1.0 Burkholderia pseudomallei 116399000 | Burkholderia pseudomallei | 1.0 Burkholderia pyrrocinia (genomovar IX) 113677007 | Burkholderia pyrrocinia | 1.0 Burkholderia sp. 414324002 | Burkholderia species | 3.0 3.0 - Changed SNOMED code from 116201008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Burkholderia stabilis (genomovar IV) 416616001 | Burkholderia stabilis | 1.0 Burkholderia thailandensis 113678002 | Burkholderia thailandensis | 1.0 Burkholderia ubonensis 431686001 | Burkholderia ubonensis | 1.0 Burkholderia vietnamiensis (genomovar V) 113680008 | Burkholderia vietnamensis | 1.0 Burkholderiaceae 414197007 | Burkholderiaceae | 1.0 Buttiauxella agrestis 10969007 | Buttiauxella agrestis | 1.0 Buttiauxella ferragutiae 417520001 | Buttiauxella ferragutiae | 1.0 Buttiauxella gaviniae 416852004 | Buttiauxella gaviniae | 1.0 Buttiauxella sp. 3451006 | Buttiauxella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131254002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Caliciviridae 243627002 | Family Caliciviridae | 1.0 Calliphora augur 85965007 | Calliphora augur | 2.0 2.0 - Changed preferred name (was Calliphora auger) 1.0 - Added by PUTS project Calliphora stygia 67605002 | Calliphora stygia | 1.0 Calosphaeriaceae 415911004 | Calosphaeriaceae | 1.0 Calymmatobacterium sp. 86702009 | Calymmatobacterium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131231006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Cellulomonas hominis 114196001 | Cellulomonas hominis | 1.0 Cellulomonas humilata 431580002 | Cellulomonas humilata | 1.0 Cellulomonas sp. 114188006 | Cellulomonas species | 3.0 3.0 - Changed SNOMED code from 131405006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Cellulosimicrobium cellulans 409862004 | Cellulosimicrobium cellulans | 2.0 2.0 - Changed preferred name (was CELLULOSIMICROBIUM CELLULANS) 1.0 - Added by PUTS project Cellulosimicrobium sp. 409860007 | Cellulosimicrobium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 409861006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Centipeda periodontii 72002007 | Centipeda periodontii | 1.0 Centipeda sp. 90699007 | Centipeda species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131239008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Cetobacterium somerae 433798005 | Cetobacterium somerae | 1.0 Chaetomiaceae 415912006 | Chaetomiaceae | 1.0 Chaetomium globosum 38270005 | Chaetomium globosum | 1.0 Chaetomium murorum 417077007 | Chaetomium murorum | 2.0 2.0 - Changed preferred name (was CHAETOMIUM MURORUM) 1.0 - Added by PUTS project Chaetomium sp. 10210008 | Chaetomium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 415895008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Chaetothyriales 419742006 | Chaetothyriales | 1.0 Chikungunya 2423009 | Chikungunya virus | 1.0 Chilomastix mesnili 41340007 | Chilomastix mesnili | 1.0 Chlamydophila pneumoniae 103514009 | Chlamydophila pneumoniae | 1.0 3.0 - Changed preferred name from 'Chlamydia pneumoniae' 1.0 - Added by PUTS project Chlamydophila psittaci 14590003 | Chlamydophila psittaci | 1.0 3.0 - Changed preferred name from 'Chlamydia psittaci' 1.0 - Added by PUTS project Chlamydia sp. 16241000 | Chlamydia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131418003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Chlamydia trachomatis 63938009 | Chlamydia trachomatis | 1.0 Chlamydia trachomatis, serotype A 115289001 | Chlamydia trachomatis, serotype A | 1.0 Chlamydia trachomatis, serotype B 115290005 | Chlamydia trachomatis, serotype B | 1.0 Chlamydia trachomatis, serotype C 115292002 | Chlamydia trachomatis, serotype C | 1.0 Chlamydia trachomatis, serotype L1 115300003 | Chlamydia trachomatis, serotype L1 | 3.0 3.0 - Changed preferred term from 'Chlamydia Trachomatis, Serotype L1' 1.0 - Added by PUTS project Chlamydia trachomatis, serotype L2 115301004 | Chlamydia trachomatis, serotype L2 | 3.0 3.0 - Changed preferred term from 'Chlamydia Trachomatis, Serotype L2' 1.0 - Added by PUTS project Chlamydia trachomatis, serotype L3 115318000 | Chlamydia trachomatis, serotype L3 | 3.0 3.0 - Changed preferred term from 'Chlamydia Trachomatis, Serotype L3' 1.0 - Added by PUTS project Chlamydiaceae 3.0 3.0 - This was removed by PITUS-16- working group 3 1.0 - Added by PUTS project Chordopoxvirinae 424428001 | Chordopoxvirinae | 1.0 Chromobacterium sp. 20064000 | Chromobacterium species | 3.0 3.0 - Changed SNOMED code from 116459004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Chromobacterium violaceum 11042002 | Chromobacterium violaceum | 1.0 Chryseobacterium (Elizabethkingia) mirocola 444815005 | Elizabethkingia miricola | 1.0 Chryseobacterium gleum 113548000 | Chryseobacterium gleum | 1.0 Chryseobacterium indologenes 113549008 | Chryseobacterium indologenes | 1.0 Chryseobacterium scophthalmum 432598001 | Chryseobacterium scophthalmum | 1.0 Chryseobacterium sp. 115125000 | Chryseobacterium species | 3.0 3.0 - Changed SNOMED code from 116388002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Chryseomonas luteola 33919008 | Chryseomonas luteola | 1.0 Chryseomonas sp. 5274006 | Chryseomonas species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131233009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Chrysoma sp. 83053009 | Chrysomya | 1.0 Chrysomya bezziana 39314000 | Chrysomya bezziana | 1.0 Chrysosporium queenslandicum 415896009 | Chrysosporium tropicum | 1.0 Chrysosporium sp. 55038006 | Chrysosporium species | 3.0 3.0 - Changed SNOMED code from 115993003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Cimex lectularius (bed bug) 67052007 | Cimex lectularius | 1.0 Citrobacter amalonaticus 55744003 | Citrobacter amalonaticus | 2.0 2.0 - Changed preferred name (was CITROBACTER AMALONATICUS) 1.0 - Added by PUTS project Citrobacter braakii 114262000 | Citrobacter braakii | 1.0 Citrobacter farmeri 114263005 | Citrobacter farmeri | 2.0 2.0 - Changed preferred name (was CITROBACTER FARMERI) 1.0 - Added by PUTS project Citrobacter freundii 6265002 | Citrobacter freundii | 2.0 2.0 - Changed preferred name (was CITROBACTER FREUNDII) 1.0 - Added by PUTS project Citrobacter gillenii 416990006 | Citrobacter gillenii | 1.0 Citrobacter intermedia 25802000 | Citrobacter intermedius | 1.0 Citrobacter koseri 114264004 | Citrobacter koseri | 1.0 Citrobacter murliniae 417581000 | Citrobacter murliniae | 1.0 Citrobacter rodentium 114444007 | Citrobacter rodentium | 1.0 Citrobacter sedlakii 114265003 | Citrobacter sedlakii | 1.0 Citrobacter sp. 75972000 | Citrobacter species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131256000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Citrobacter werkmanii 114442006 | Citrobacter werkmanii | 1.0 Citrobacter youngae 114443001 | Citrobacter youngae | 1.0 Cladophialiphora bantiana 415898005 | Cladophialophora bantiana | 1.0 Cladophialophora carrionii 23903006 | Cladosporium carrionii | 1.0 Cladosporium cladosporioides 21121003 | Cladosporium cladosporioides | 1.0 Cladosporium sp. 32043002 | Cladosporium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372389009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Clavicipitaceae 426096004 | Clavicipitaceae | 1.0 Clonorchis sinensis 36559008 | Clonorchis sinensis | 1.0 Clostridiaceae 424511002 | Clostridiaceae | 1.0 Clostridium argentiense 113565009 | Clostridium argentiense | 2.0 2.0 - Changed preferred name (was Clostridium argentinense) 1.0 - Added by PUTS project Clostridium baratii 31169007 | Clostridium baratii | 2.0 2.0 - Changed preferred name (was Clostridium barati) 1.0 - Added by PUTS project Clostridium beijerinckii 9766004 | Clostridium beijerinckii | 1.0 Clostridium bifermentans 8208007 | Clostridium bifermentans | 1.0 Clostridium bolteae 413879005 | Clostridium bolteae | 1.0 Clostridium botulinum 13080008 | Clostridium botulinum | 1.0 Clostridium botulinum (NP) B&F 20785008 | Clostridium botulinum, type B | 1.0 Clostridium botulinum (NP) E 8386006 | Clostridium botulinum, type E | 1.0 Clostridium botulinum (P) A&B 18065004 | Clostridium botulinum, type A | 1.0 Clostridium botulinum (P) F 32829006 | Clostridium botulinum, type F | 1.0

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Corynebacterium diphtheriae subsp mitis 13755001 | Corynebacterium diphtheriae type mitis | 1.0 Corynebacterium durum 413926004 | Corynebacterium durum | 1.0 Corynebacterium equi 80771008 | Rhodococcus equi | 1.0 Corynebacterium falsenii 116389005 | Corynebacterium falsenii | 2.0 2.0 - Changed preferred name (was CORYNEBACTERIUM FALSENII) 1.0 - Added by PUTS project Corynebacterium freneyi 416914001 | Corynebacterium freneyi | 1.0 Corynebacterium glucuronolyticum 413927008 | Corynebacterium glucuronolyticum | 2.0 2.0 - Changed preferred name (was CORYNEBACTERIUM GLUCURONOLYTICUM) 1.0 - Added by PUTS project Corynebacterium halotolerans 424529007 | Corynebacterium halotolerans | 1.0 Corynebacterium imitans 413928003 | Corynebacterium imitans | 1.0 Corynebacterium jeikeium 63410006 | Corynebacterium jeikeium | 1.0 Corynebacterium kroppenstedtii 363777001 | Corynebacterium kroppenstedtii | 1.0 Corynebacterium kutscheri 88575000 | Corynebacterium kutscheri | 1.0 Corynebacterium lipophiloflavum 416863001 | Corynebacterium lipophiloflavum | 1.0 Corynebacterium macginleyi 363772007 | Corynebacterium macginleyi | 2.0 2.0 - Changed preferred name (was CORYNEBACTERIUM MACGINLEYI) 1.0 - Added by PUTS project Corynebacterium matruchotii 89922004 | Corynebacterium matruchotii | 1.0 Corynebacterium minutissimum 83594007 | Corynebacterium minutissimum | 1.0 Corynebacterium mucifaciens 413929006 | Corynebacterium mucifaciens | 1.0 Corynebacterium mycetoides 58879005 | Corynebacterium mycetoides | 1.0 Corynebacterium propinquum 113612009 | Corynebacterium propinquum | 1.0 Corynebacterium pseudodiphtheriticum 12050008 | Corynebacterium pseudodiphtheriticum | 2.0 2.0 - Changed preferred name (was CORYNEBACTERIUM PSEUDODIPHTHERITICUM) 1.0 - Added by PUTS project

Corynebacterium pseudogenitalium 243264002 | Corynebacterium pseudogenitalium | 1.0 Corynebacterium pseudotuberculosis 55084001 | Corynebacterium pseudotuberculosis | 1.0 Corynebacterium renale 62000003 | Corynebacterium renale | 1.0 Corynebacterium resistens 442804004 | Corynebacterium resistens | 1.0 Corynebacterium riegelii 131241009 | Corynebacterium riegelii | 1.0 Corynebacterium simulans 416655000 | Corynebacterium simulans | 1.0 Corynebacterium sp. 77086004 | Corynebacterium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116463006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Corynebacterium striatum 63815007 | Corynebacterium striatum | 2.0 2.0 - Changed preferred name (was CORYNEBACTERIUM STRIATUM) 1.0 - Added by PUTS project Corynebacterium sundsvallense 425307003 | Corynebacterium sundsvallense | 2.0 2.0 - Changed preferred name (was CORYNEBACTERIUM SUNDSVALLENSE) 1.0 - Added by PUTS project Corynebacterium thomssenii 416311000 | Corynebacterium thomssenii | 1.0 Corynebacterium tuberculostearicum 416356007 | Corynebacterium tuberculostearicum | 1.0 Corynebacterium ulcerans 103428000 | Corynebacterium ulcerans | 1.0 Corynebacterium urealyticum 113613004 | Corynebacterium urealyticum | 1.0 Corynebacterium ureicelerivorans 429443001 | Corynebacterium ureicelerivorans | 1.0 Corynebacterium xerosis 27101006 | Corynebacterium xerosis | 1.0 Coryneform bacteria 116442009 | Coryneform bacteria | 3.0 3.0 - Changed preferred name from Coryneform Bacteria 1.0 - Added by PUTS project Coxiella burnetii 22533000 | Coxiella burnetii | 1.0 Coxiella sp. 12220009 | Coxiella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131412002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Coxiellaceae 414202000 | Coxiellaceae | 1.0 Coxsackie A 53744000 | Human coxsackievirus A | 1.0 Coxsackie B 49018005 | Human coxsackievirus B | 1.0 Coxsackie B serotype 1 66619009 | Human echovirus 9 | 1.0 Cryptobacterium curtum 417538003 | Cryptobacterium curtum | 1.0 Cryptococcus albidus 74062009 | Cryptococcus albidus | 1.0 Cryptococcus gastricus 52343001 | Cryptococcus gastricus | 1.0 Cryptococcus gatti (C.neoformans var gatti) 450862004 | cryptococcus gattii | 2.1 2.1 - Changed SNOMED code (was 243467007 | Cryptococcus neoformans var gattii |) 1.0 - Added by PUTS project

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Dengue 1 60588009 | Dengue virus, type 1 | 1.0 Dengue 2 41328007 | Dengue virus, type 2 | 1.0 Dengue 3 8467002 | Dengue virus, type 3 | 1.0 Dengue 4 36700002 | Dengue virus, type 4 | 1.0 Dermabacter hominis 413977006 | Dermabacter hominis | 1.0 Dermabacter sp. 413976002 | Dermabacter species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 413978001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Dermabacteraceae 414203005 | Dermabacteraceae | 1.0 Dermacoccaceae 426575002 | Dermacoccaceae | 1.0 Dermacoccus (Micrococcus) nishinomyaensis 113776005 | Dermacoccus nishinomiyaensis | 1.0 Dermacoccus sp. 115142006 | Dermacoccus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131318004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Dermatophilaceae 409834006 | Dermatophilaceae | 1.0 Dermatophilus congolensis 58141003 | Dermatophilus congolensis | 1.0 Dermatophilus sp. 79048004 | Dermatophilus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131242002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Desemzia incerta 420418000 | Desemzia incerta | 1.0 Desulfobvibrio desulfuricans 243394005 | Desulfovibrio desulfuricans | 1.0 Desulfovibrio fairfieldensis 443019005 | Desulfovibrio fairfieldensis | 1.0 Desulfovibrio piger 431119000 | Desulfovibrio piger | 1.0 Desulfovibrio spp. 243393004 | Desulfovibrio species | 3.0 3.0 - Changed species class abbreviation in preferred name from spp 1.0 - Added by PUTS project Desulfovibrionaceae 426186006 | Desulfovibrionaceae | 1.0 Desulfovibro vulgaris 431923009 | Desulfovibrio vulgaris | 1.0 Dialister pneumosintes 114170003 | Dialister pneumosintes | 1.0 Dialister sp. 114169004 | Dialister species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131401002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Dichelobacter nodosus 114168007 | Dichelobacter nodosus | 1.0 Dichelobacter sp. 114167002 | Dichelobacter species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131400001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Dicrocoelium dendriticum 74389006 | Dicrocoelium dendriticum | 1.0 Dientamoeba fragilis 41542000 | Dientamoeba fragilis | 1.0 Dietzia maris 48923001 | Dietzia maris | 1.0 Dietzia sp. 409831003 | Dietzia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 409846005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Dipetalonema streptocerca 49423004 | Dipetalonema streptocerca | 1.0 Diphtheroids 54642001 | Diphtheroids | 1.0 Diphyllobothrium latum 40406002 | Diphyllobothrium latum | 2.0 2.0 - Changed preferred name (was Diphyllobothrium lata) 1.0 - Added by PUTS project Diphyllobothrium sp. 48262003 | Diphyllobothrium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 418338000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Dipodascaceae 415914007 | Dipodascaceae | 1.0 Dipodascus 20683008 | Dipodascus | 1.0 Dipylidium caninum 72883000 | Dipylidium caninum | 1.0 Dirofilaria immitis 90540004 | Dirofilaria immitis | 1.0 Dirofilaria sp. 57824004 | Dirofilaria species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372403008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Dolosigranulum pigrum 363765006 | Dolosigranulum pigrum | 2.0 2.0 - Changed preferred name (was DOLOSIGRANULUM PIGRUM) 1.0 - Added by PUTS project Dolosigranulum sp. 363764005 | Dolosigranulum species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 363766007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Dorea formicigenerans 433913005 | Dorea formicigenerans | 1.0 Dothideales 426602007 | Dothideales | 1.0 Dothioraceae 426939006 | Dothioraceae | 1.0 Dracunculus medinensis 3824001 | Dracunculus medinensis | 1.0 Drechslera sp. 73185003 | Drechslera species | 1.0 Dysgonic fermenter 3 113535004 | Dysgonic fermenter 3 group | 1.0 Ebola virus 424206003 | Ebolavirus | 2.1 2.1 - Changed preferred name (was Ebola Virus) 1.0 - Added by PUTS project Echinococcus granulosus 243672005 | Echinococcus granulosus | 1.0 Echinococcus multilocularis 86648009 | Echinococcus multilocularis | 1.0 Echinococcus vogeli 44904003 | Echinococcus vogeli | 1.0 Echovirus 39164004 | Human echovirus | 1.0 Echovirus type 28 22521005 | Human rhinovirus 1A | 1.0 Edwardsiella hoshinae 4280005 | Edwardsiella hoshinae | 1.0 Edwardsiella ictaluri 68227003 | Edwardsiella ictaluri | 1.0 Edwardsiella sp. 14566004 | Edwardsiella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131257009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Edwardsiella tarda 74672006 | Edwardsiella tarda | 1.0 Eggerthella hongkongensis 414076008 | Eggerthella hongkongensis | 1.0 Eggerthella lenta 414077004 | Eggerthella lenta | 1.0 EHEC, Serotype O111:H2 407160000 | EHEC, serotype O111:H2 | 1.0 EHEC, Serotype O157:non-motile 124994003 | EHEC, serotype O157:non-motile | 1.0 Eikenella corrodens 52591004 | Eikenella corrodens | 2.0 2.0 - Changed preferred name (was EIKENELLA CORRODENS) 1.0 - Added by PUTS project Eikenella sp. 4346009 | Eikenella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131247008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Elizabethkingia meningoseptica 425774009 | Elizabethkingia meningoseptica | 1.0 Emericella nidulans 71886006 | Emericella nidulans | 1.0 Empedobacter (Flavobacterium) brevis 113629007 | Empedobacter brevis | 1.0 Empedobacter sp. 115126004 | Empedobacter species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131249006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Encephalitozoon sp. 22134004 | Encephalitozoon species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372406000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Endolimax nana 53272006 | Endolimax nana | 1.0 Entamoeba coli 79235009 | Entamoeba coli | 1.0 Entamoeba dispar 415987008 | Entamoeba dispar | 1.0 Entamoeba gingivalis 44457009 | Entamoeba gingivalis | 1.0 Entamoeba hartmani 70632005 | Entamoeba hartmanni | 1.0 Entamoeba histolytica 4716008 | Entamoeba histolytica | 1.0 Entamoeba histolytica/Entamoeba dispar complex 363769000 | Entamoeba histolytica/Entamoeba dispar complex | 1.0 Entamoeba polecki 66223005 | Entamoeba polecki | 1.0

Faecalibacterium prausnitzii 433993006 | Faecalibacterium prausnitzii | 1.0 Fasciola hepatica 112450003 | Fasciola hepatica | 1.0 Fasciola sp. 28291005 | Fasciola species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372410002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Fasciolopsis buski 28383004 | Fasciolopsis buski | 1.0 Fastidious Gram Negative Rods 414234009 | Fastidious Gram Negative Rods | 1.0 Filifactor alocis 431367004 | Filifactor alocis | 1.0 Filifactor sp. 115663007 | Filifactor species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131409000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Flavimonas oryzihabitans 113931000 | Pseudomonas oryzihabitans | 2.0 2.0 - Changed preferred name (was FLAVIMONAS ORYZIHABITANS) 1.0 - Added by PUTS project Flavivirus 28375005 | Flavivirus | 1.0 Flavobacterium sp. 18986002 | Flavobacterium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 125037002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Fluke 243670002 | Trematode | 1.0 Fluoribacter sp. 115165001 | Fluoribacter species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131293006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Fonsecaea pedrosoi 69356007 | Fonsecaea pedrosoi | 2.0 2.0 - Changed preferred name (was Fonsecaea pedrosei) 1.0 - Added by PUTS project Fonsecaea sp. 23639003 | Fonsecaea species | 1.0 Francisella philomiragia 113756004 | Francisella philomiragia | 1.0 Francisella sp. 50255000 | Francisella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131308009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Francisella tularensis 51526001 | Francisella tularensis | 1.0 Francisellaceae 426557003 | Francisellaceae | 1.0 Fungus 23496000 | Fungus | 1.0

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Fusarium equiseti 32095005 | Fusarium equiseti | 1.0 Fusarium moniliforme 58429004 | Fusarium moniliforme | 1.0 Fusarium oxysporum 38836002 | Fusarium oxysporum | 1.0 Fusarium proliferatum 243549003 | Fusarium proliferatum | 1.0 Fusarium solani 46351008 | Fusarium solani | 1.0 Fusarium sp. 35238009 | Fusarium species | 1.0 Fusobacteriaceae 426376002 | Fusobacteriaceae | 1.0 Fusobacterium canifelinum 432342000 | Fusobacterium canifelinum | 1.0 Fusobacterium gonidiaformans 84644009 | Fusobacterium gonidiaformans | 2.0 2.0 - Changed preferred name (was Fusobacterium gonidoformanis) 1.0 - Added by PUTS project Fusobacterium mortiferum 112330001 | Fusobacterium mortiferum | 2.0 2.0 - Changed preferred name (was FUSOBACTERIUM MORTIFERUM) 1.0 - Added by PUTS project Fusobacterium naviforme 33311002 | Fusobacterium naviforme | 1.0 Fusobacterium necrogenes 17304009 | Fusobacterium necrogenes | 1.0 Fusobacterium necrophorum 27274008 | Fusobacterium necrophorum | 2.0 2.0 - Changed preferred name (was FUSOBACTERIUM NECROPHORUM) 1.0 - Added by PUTS project Fusobacterium necrophorum subsp necrophorum 113758003 | Fusobacterium necrophorum ss necrophorum | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Fusobacterium nucleatum 32763000 | Fusobacterium nucleatum | 2.0 2.0 - Changed preferred name (was FUSOBACTERIUM NUCLEATUM) 1.0 - Added by PUTS project Fusobacterium nucleatum subsp fusiforme 113760001 | Fusobacterium nucleatum ss fusiforme | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Fusobacterium nucleatum subsp nucleatum 113761002 | Fusobacterium nucleatum ss nucleatum | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Fusobacterium nucleatum subsp polymorphum 113762009 | Fusobacterium nucleatum ss polymorphum | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Fusobacterium nucleatum subsp vincentii 113763004 | Fusobacterium nucleatum ss vincentii | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Fusobacterium periodonticum 69601004 | Fusobacterium periodonticum | 1.0 Fusobacterium russi 85226004 | Fusobacterium russii | 1.0 Fusobacterium sp. 33562003 | Fusobacterium species | 3.0 3.0 - Changed SNOMED code from 116467007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Fusobacterium ulcerans 113764005 | Fusobacterium ulcerans | 1.0 Fusobacterium varium 1972005 | Fusobacterium varium | 2.0 2.0 - Changed preferred name (was FUSOBACTERIUM VARIUM) 1.0 - Added by PUTS project Gallicola barnesae 433725004 | Gallicola barnesae | 1.0 Gardnerella sp. 69256005 | Gardnerella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131309001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Gardnerella vaginalis 64071004 | Gardnerella vaginalis | 1.0 Gemella haemolysans 37511002 | Gemella haemolysans | 1.0 Gemella morbillorum 113765006 | Gemella morbillorum | 1.0 Gemella sanguinis 125038007 | Gemella sanguinis | 1.0 Gemella sp. 11590002 | Gemella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131311005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Geobacillus (Bacillus) stearothermophilus 433616004 | Geobacillus stearothermophilus | 1.0 Geobacillus (Bacillus) thermodenitrificans 433668006 | Geobacillus thermodenitrificans | 1.0 Geobacillus (Bacillus) thermoglucosidasius 434278008 | Geobacillus thermoglucosidasius | 1.0 Geomyces sp. 415924004 | Geomyces species | 3.0 3.0 - Changed SNOMED code from 415926002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Geotrichum candidum 41625002 | Geotrichum candidum | 2.0 2.0 - Changed preferred name (was GEOTRICHUM CANDIDUM) 1.0 - Added by PUTS project Geotrichum klebahnii (penicillatum) 446493009 | Geotrichum klebahnii | 1.0 Geotrichum sp. 34324005 | Geotrichum species | 1.0 Giardia intestinalis 19122007 | Giardia intestinalis | 1.0 Giardia lamblia 78181009 | Giardia lamblia | 1.0 Giardia sp. 61419001 | Giardia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372412005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Gliocladium sp. 28920007 | Gliocladium species | 1.0 Globicatella sanguinis 414345009 | Globicatella sanguinis | 1.0 Globicatella sp. 414344008 | Globicatella species | 2.0 3.0 - Changed SNOMED code from 414346005 which is now inactive 2.0 - Changed preferred name (was GLOBICATELLA SP.) 1.0 - Added by PUTS project Globicatella sulfidifaciens 414347001 | Globicatella sulfidifaciens | 1.0 Glycopeptide resistant Staphylococcus aureus 404679009 | Glycopeptide resistant Staphylococcus aureus | 1.0 GNB EF-4A 81325006 | Gram-negative bacterium | 1.0 Gordona sp. 24871004 | Mycobacterium gordonae | 1.0 Gordonia aichiensis 416711002 | Gordonia aichiensis | 1.0 Gordonia bronchialis 113646005 | Gordonia bronchialis | 1.0 Gordonia otitidis 443659007 | Gordonia otitidis | 1.0 Gordonia polyisoprenivorans 420096009 | Gordonia polyisoprenivorans | 1.0 Gordonia rubripertincta 113647001 | Gordonia rubripertincta | 1.0 Gordonia sp. 115143001 | Gordonia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131264006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Gordonia sputi 113648006 | Gordonia sputi | 1.0 Gordonia terrae 113649003 | Gordonia terrae | 1.0 Gordoniaceae 426756005 | Gordoniaceae | 1.0 Gram-negative diplococcus 83410001 | Gram-negative diplococcus | 1.0 Gram-positive bacillus 83514008 | Gram-positive bacillus | 3.0 3.0 - Changed preferred name from 'Gram-Positive Bacillus' 1.0 - Added by PUTS project Gram-positive coccobacillus 49682003 | Gram positive coccobacillus | 1.0 Gram-positive coccus 59206002 | Gram-positive coccus | 1.0 Gram-positive diplococcus 11471007 | Gram-positive diplococcus | 1.0 Granulicatella (Abiotrophia) elegans 115944008 | Granulicatella elegans | 1.0 Granulicatella adiacens 113713009 | Granulicatella adiacens | 1.0 Granulicatella sp. 409814005 | Granulicatella species | 3.0 3.0 - Changed SNOMED code from 414365002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Graphium sp. 21755009 | Graphium species | 1.0 Grimontia hollisae 433669003 | Grimontia hollisae | 1.0 Group A Streptococcus 80166006 | Streptococcus pyogenes | 1.0 Group B Streptococcus 43492007 | Group B streptococcus | 1.0 Group C Streptococcus 89181007 | Streptococcus, group C | 1.0 Group D Streptococcus 55547008 | Streptococcus, group D | 1.0 Group F Streptococcus 83503005 | Streptococcus, group F | 1.0 Group G Streptococcus 75012005 | Streptococcus, group G | 1.0 Gymnoascus sp. 45792005 | Gymnoascus | 1.0 Haemophilus aegyptius 27784005 | Haemophilus aegyptius | 1.0 Haemophilus ducreyi 64889004 | Haemophilus ducreyi | 1.0 Haemophilus haemoglobinophilus 72339004 | Haemophilus haemoglobinophilus | 1.0 Haemophilus haemolyticus 54950008 | Haemophilus haemolyticus | 1.0

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Leptospira Interrogans Serovar Hardjo 53343008 | Leptospira interrogans, serogroup hardjo | 1.0 Leptospira Interrogans Serovar Icterohaemorrhagiae 19251003 | Leptospira interrogans, serogroup icterohemorrhagiae | 1.0 Leptospira Interrogans Serovar Pomona 302610000 | Leptospira interrogans serovar pomona | 1.0 Leptospira kirschneri 113811000 | Leptospira kirschneri | 1.0 Leptospira meyeri 113812007 | Leptospira meyeri | 1.0 Leptospira noguchii 113813002 | Leptospira noguchii | 1.0 Leptospira sp. 26764003 | Leptospira species | 3.0 3.0 - Changed SNOMED code from 116200009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Leptospira weilii 113816005 | Leptospira weilii | 1.0 Leptospira wolbachii 113817001 | Leptospira wolbachii | 1.0 Leptotrichia buccalis 85744006 | Leptotrichia buccalis | 1.0 Leptotrichia goodfellowii 433192002 | Leptotrichia goodfellowii | 1.0 Leptotrichia hofstadii 432196009 | Leptotrichia hofstadii | 1.0 Leptotrichia shahii 431792004 | Leptotrichia shahii | 1.0 Leptotrichia sp. 52505003 | Leptotrichia species | 3.0 3.0 - Changed SNOMED code from 131328008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Leptotrichia trevisanii 431794003 | Leptotrichia trevisanii | 1.0 Leptotrichia wadei 433194001 | Leptotrichia wadei | 1.0 Leuconostoc citreum 113821008 | Leuconostoc citreum | 3.0 3.0 - Change preferred name from Leuconostoc Citreum 1.0 - Added by PUTS project Leuconostoc lactis 70285009 | Leuconostoc lactis | 2.0 2.0 - Changed preferred name (was LEUCONOSTOC LACTIS) 1.0 - Added by PUTS project Leuconostoc mesenteriodes dextranicum 86938009 | Leuconostoc mesenteroides dextranicum | 1.0 Leuconostoc mesenteroides 71403009 | Leuconostoc mesenteroides | 1.0 Leuconostoc mesenteroides cremoris 35041008 | Leuconostoc mesenteroides cremoris | 2.0 2.0 - Changed preferred name (was LEUCONOSTOC MESENTEROIDES CREMORIS) 1.0 - Added by PUTS project Leuconostoc mesenteroides mesenteroides 67140002 | Leuconostoc mesenteroides mesenteroides | 1.0 Leuconostoc pseudomesenteroides 243235006 | Leuconostoc pseudomesenteroides | 1.0 Leuconostoc sp. 43639007 | Leuconostoc species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131329000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Leuconostocaceae 417156006 | Leuconostocaceae | 1.0 Listeria grayi 67816007 | Listeria grayi | 1.0 Listeria innocua 48331004 | Listeria innocua | 1.0 Listeria ivanovii 55032007 | Listeria ivanovii | 1.0 Listeria ivanovii subsp ivanovii 433053006 | Listeria ivanovii subspecies ivanovii | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Listeria ivanovii subsp londoniensis 243284003 | Listeria ivanovii londoniensis | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Listeria monocytogenes 36094007 | Listeria monocytogenes | 1.0 Listeria seeligeri 43091008 | Listeria seeligeri | 1.0 Listeria sp. 23566007 | Listeria species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131330005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Listeria welshimeri 80757000 | Listeria welshimeri | 1.0 Listeriaceae 414208001 | Listeriaceae | 1.0 Listonella anguillarum 427593005 | Listonella anguillarum | 1.0 Listonella sp. 115043004 | Listonella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131304006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Lucillia cuprina 46115009 | Lucilia cuprina | 1.0 Lymphocytic Choriomeningitis 82518003 | Lymphocytic choriomeningitis virus | 1.0 Lyssavirus 112368004 | Genus Lyssavirus | 1.0 Macracanthorhynchus hirudinaceus 82926002 | Macracanthorhynchus hirudinaceus | 1.0 Macrococcus sp. 414633005 | Macrococcus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 414638001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Madurella grisea 82871006 | Madurella grisea | 1.0 Madurella mycetomatis 24876009 | Madurella mycetomatis | 1.0 Madurella sp. 23009007 | Madurella species | 1.0 Maggot 8181006 | Maggot | 1.0 Magnusiomyces capitatus 67999003 | Blastoschizomyces pseudotrichosporon | 3.0 3.0 - Added by PITUS-16 Working group 3 Malassezia furfur 29619007 | Malassezia furfur | 2.0 2.0 - Changed preferred name (was MALASSEZIA FURFUR) 1.0 - Added by PUTS project Malassezia pachydermatis 51257000 | Malassezia pachydermatis | 1.0 Malbranchea sp. 87186007 | Malbranchea species | 1.0 Mannheimia haemolytica 128385005 | Mannheimia haemolytica | 1.0 Mannheimia sp. 128381001 | Mannheimia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 128382008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Mansonella ozzardi 69560009 | Mansonella ozzardi | 1.0 Mansonella perstans 243669003 | Mansonella perstans | 1.0 Mansonella sp. 21881004 | Mansonella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 363771000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Mansonella streptocerca 243668006 | Mansonella streptocerca | 1.0 Marburg virus 422839008 | Lake Victoria marburgvirus | 2.1 2.1 - Changed preferred name (was Marburg Virus) 1.0 - Added by PUTS project Measles virus 52584002 | Measles virus | 2.1 2.1 - Added by PITUS-14 Working group 2 after feedback from Public comment 1.0 - Added by PUTS project Megasphaera elsdenii 26044001 | Megasphaera elsdenii | 1.0 Megasphaera sp. 48889004 | Megasphaera species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131334001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Metagonimus yokogawai 77378006 | Metagonimus yokogawai | 1.0 Metarhizium anisopliae 116446007 | Metarhizium anisopliae | 1.0 Metarhizium sp. 116443004 | Metarhizium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116444005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Methicillin resistant Staphylococcus aureus 115329001 | Methicillin resistant Staphylococcus aureus | 1.0 Methylobacteriaceae 414209009 | Methylobacteriaceae | 1.0 Methylobacterium extorquens 74005008 | Methylobacterium extorquens | 1.0 Methylobacterium mesophilicum 103486003 | Methylobacterium mesophilicum | 2.0 2.0 - Changed preferred name (was METHYLOBACTERIUM MESOPHILICUM) 1.0 - Added by PUTS project Methylobacterium sp. 38395008 | Methylobacterium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116476000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Methylococcaceae 115075001 | Methylococcaceae | 1.0 Microascaceae 426381006 | Microascaceae | 1.0 Microbacteriaceae 385499003 | Microbacteriaceae | 1.0 Microbacterium arborescens 414699006 | Microbacterium arborescens | 1.0 Microbacterium aurum 114201005 | Microbacterium aurum | 1.0 Microbacterium barkeri 114059007 | Microbacterium barkeri | 1.0 Microbacterium dextranolyticum 114202003 | Microbacterium dextranolyticum | 1.0

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Microbacterium imperiale 114203008 | Microbacterium imperiale | 1.0 Microbacterium lacticum 114204002 | Microbacterium lacticum | 1.0 Microbacterium laevaniformans 114205001 | Microbacterium laevaniformans | 1.0 Microbacterium liquefaciens 114063000 | Microbacterium liquefaciens | 1.0 Microbacterium oxydans 414713001 | Microbacterium oxydans | 1.0 Microbacterium paraoxydans 414714007 | Microbacterium paraoxydans | 1.0 Microbacterium saperdae 426662005 | Microbacterium saperdae | 1.0 Micrococcus antarcticus 416555005 | Micrococcus antarcticus | 1.0 Micrococcus luteus 48299003 | Micrococcus luteus | 2.0 2.0 - Changed preferred name (was MICROCOCCUS LUTEUS) 1.0 - Added by PUTS project Micrococcus lylae 61376003 | Micrococcus lylae | 1.0 Micrococcus sp. 52864008 | Micrococcus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116486004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Microsporidia 418382009 | Phylum Microsporidia | 1.0 Microsporum audouinii 68952008 | Microsporum audouinii | 1.0 Microsporum canis 19018004 | Microsporum canis | 2.0 2.0 - Changed preferred name (was MICROSPORUM CANIS) 1.0 - Added by PUTS project Microsporum canis var. distortum 116002005 | Microsporum canis var. distortum | 1.0 Microsporum cookei 61799001 | Microsporum cookeii | 1.0 Microsporum equinum 71407005 | Microsporum equinum | 1.0 Microsporum ferrugineum 20282005 | Microsporum ferrugineum | 1.0 Microsporum fulvum 38383008 | Microsporum fulvum | 2.0 2.0 - Changed preferred name (was MICROSPORUM FULVUM) 1.0 - Added by PUTS project Microsporum gallinae 13862003 | Microsporum gallinae | 1.0 Microsporum gypseum 112404001 | Microsporum gypseum | 2.0 2.0 - Changed preferred name (was MICROSPORUM GYPSEUM) 1.0 - Added by PUTS project Microsporum nanum 4488001 | Microsporum nanum | 1.0 Microsporum persicolor 63368008 | Microsporum persicolor | 1.0 Microsporum sp. 11983001 | Microsporum species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116000002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Microsporum vanbreuseghemii 53325009 | Microsporum vanbreuseghemii | 1.0 Mite 84073006 | Mite | 1.0 Mobiluncus curtisii 30224004 | Mobiluncus curtisii | 1.0 Mobiluncus mulieris 13716002 | Mobiluncus mulieris | 1.0 Mobiluncus sp. 8984004 | Mobiluncus species | 3.0 3.0 - Changed SNOMED code from 131335000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Moellerella sp. 71655003 | Moellerella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131272008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Moellerella wisconsensis 37107002 | Moellerella wisconsensis | 1.0 Mogibacterium neglectum 429899006 | Mogibacterium neglectum | 1.0 Mogibacterium timidum 417280000 | Mogibacterium timidum | 1.0 Mogibacterium vescum 416225002 | Mogibacterium vescum | 1.0 Molluscum contagiosum 68855006 | Molluscum contagiosum virus | 2.0 2.0 - Changed preferred name (was Moluscum Contagiosum) 1.0 - Added by PUTS project Moniliformis moniliformis 62642000 | Moniliformis moniliformis | 1.0 Monocillium sp. 415936005 | Monocillium species | 3.0 3.0 - Changed SNOMED code from 415937001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Moraxella atlantae 47491001 | Moraxella atlantae | 1.0 Moraxella boevrei 113832008 | Moraxella boevrei | 1.0 Moraxella bovis 19425003 | Moraxella bovis | 1.0 Moraxella canis 113833003 | Moraxella canis | 1.0 Moraxella caprae 113834009 | Moraxella caprae | 1.0 Moraxella catarrhalis 24226003 | Moraxella catarrhalis | 2.0 2.0 - Changed preferred name (was MORAXELLA CATARRHALIS) 1.0 - Added by PUTS project Moraxella caviae 2934002 | Moraxella caviae | 1.0 Moraxella cuniculi 46450008 | Moraxella cuniculi | 1.0 Moraxella lacunata 84066001 | Moraxella lacunata | 1.0 Moraxella lincolnii 113836006 | Moraxella lincolnii | 1.0 Moraxella nonliquefaciens 46455003 | Moraxella nonliquefaciens | 1.0 Moraxella oblonga 430486003 | Moraxella oblonga | 1.0 Moraxella osloensis 72401008 | Moraxella osloensis | 1.0 Moraxella ovis 112332009 | Moraxella ovis | 1.0 Moraxella sp. 36361003 | Moraxella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131337008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Moraxellaceae 427501004 | Moraxellaceae | 1.0 Morganella morganii 243301005 | Morganella morganii | 2.0 2.0 - Changed preferred name (was MORGANELLA MORGANII) 1.0 - Added by PUTS project Morganella morganii subsp morganii 243302003 | Morganella morganii subsp morganii | 3.0 3.0 - Changed preferred name, changing 'ssp' to subsp 1.0 - Added by PUTS project Morganella morganii subsp sibonii 243303008 | Morganella morganii subsp sibonii | 3.0 3.0 - Changed preferred name, changing 'ssp' to subsp 1.0 - Added by PUTS project Morganella sp. 50713005 | Morganella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372316007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Morococcus sp. 31014007 | Morococcus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131338003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Mortierella sp. 61016004 | Mortierella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. 1.0 - Added by PUTS project Mortierella wolfii 63197001 | Mortierella wolfii | 1.0 Mucor circinelloides 67625003 | Mucor circinelloides | 1.0 Mucor racemosus 29589005 | Mucor racemosus | 1.0 Mucor ramosissimus 79297004 | Mucor ramosissimus | 1.0 Mucor sp. 49782006 | Mucor species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372317003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Mucoraceae 427140002 | Mucoraceae | 1.0 Mumps virus 50384007 | Mumps virus | 2.1 2.1 - Changed preferred name (was Mumps Virus) 1.0 - Added by PUTS project Murray Valley Encephalitis 31989009 | Murray Valley encephalitis virus | 1.0 Mycelia sterilia 243555008 | Mycelia sterilia | 1.0 Mycobacteriaceae 115108002 | Mycobacteriaceae | 1.0 Mycobacterium abscessus 113838007 | Mycobacterium abscessus | 1.0 Mycobacterium africanum 51320008 | Mycobacterium africanum | 1.0 Mycobacterium agri 29111009 | Mycobacterium agri | 1.0 Mycobacterium aichiense 66940008 | Mycobacterium aichiense | 1.0 Mycobacterium arupense 432820006 | Mycobacterium arupense | 1.0 Mycobacterium asiaticum 44760001 | Mycobacterium asiaticum | 1.0 Mycobacterium atypical group 110379001 | Mycobacterium, non-TB | 1.0 Mycobacterium aurum 48134004 | Mycobacterium aurum | 1.0

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Mycoplasma sp. 78981005 | Mycoplasma species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116487008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Mycoplasma spermatophilum 113890003 | Mycoplasma spermatophilum | 1.0 Mycoplasmataceae 115109005 | Mycoplasmataceae | 1.0 Myriodontium keratinophilum 74988009 | Myriodontium keratinophylum | 1.0 Myroides (Flavobacterium) odoratus/odoratimimus 113557006 | Myroides odoratimimus | 1.0 Myroides odoratus 113558001 | Myroides odoratus | 1.0 Myroides sp. 115127008 | Myroides species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131237005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Naegleria fowleri 20942007 | Naegleria fowleri | 1.0 Naegleria sp. 18441007 | Naegleria species | 1.0 Nannizzia cajetani 76608007 | Arthroderma cajetani | 1.0 Necator americanus 43905006 | Necator americanus | 1.0 Neisseria animaloris/zoodegmatis 442202005 | Neisseria animaloris | 1.0 Neisseria canis 54978009 | Neisseria canis | 1.0 Neisseria cinerea 69312007 | Neisseria cinerea | 1.0 Neisseria denitrificans 63863005 | Neisseria denitrificans | 1.0 Neisseria dentiae 113896009 | Neisseria dentiae | 1.0 Neisseria elongata 12638001 | Neisseria elongata | 2.0 2.0 - Changed preferred name (was NEISSERIA ELONGATA) 1.0 - Added by PUTS project Neisseria flavescens 75566007 | Neisseria flavescens | 1.0 Neisseria gonorrhoeae 68704007 | Neisseria gonorrhoeae | 2.0 2.0 - Changed preferred name (was NEISSERIA GONORRHOEAE) 1.0 - Added by PUTS project Neisseria iguanae 113897000 | Neisseria iguanae | 1.0 Neisseria lactamica 54915000 | Neisseria lactamica | 2.0 2.0 - Changed preferred name (was NEISSERIA LACTAMICA) 1.0 - Added by PUTS project Neisseria macacae 112341004 | Neisseria macacae | 1.0 Neisseria meningitidis 17872004 | Neisseria meningitidis | 1.0 Neisseria meningitidis group 29E 698162001 | Neisseria meningitidis serogroup 29E | 3.0 3.0 - Added by PITUS-16 Working group 3 Neisseria meningitidis group A 103479006 | Neisseria meningitidis serogroup A | 2.0 2.0 - Changed preferred name (was NEISSERIA MENINGITIDIS GROUP A) 1.0 - Added by PUTS project Neisseria meningitidis group B 103480009 | Neisseria meningitidis serogroup B | 2.0 2.0 - Changed preferred name (was NEISSERIA MENINGITIDIS GROUP B) 1.0 - Added by PUTS project Neisseria meningitidis group C 103481008 | Neisseria meningitidis serogroup C | 2.0 2.0 - Changed preferred name (was NEISSERIA MENINGITIDIS GROUP C) 1.0 - Added by PUTS project Neisseria meningitidis group D 3.0 3.0 - Delete Neisseria meningitidis group D as CDC indicates that this is no longer a serogroup 2.1 - Changed SNOMED code from 443023002 | Neisseria meningitidis serogroup D | as it was a erroneous code, submitted request for a new SNOMED code 1.0 - Added by PUTS project

Neisseria meningitidis group W135 103483006 | Neisseria meningitidis serogroup W135 | 3.0 3.0 - Changed the SNOMED CT mapping description from 'Neisseria meningitidis W135' to 'Neisseria meningitidis serogroup W135' 1.0 - Added by PUTS project Neisseria meningitidis group X 125041003 | Neisseria meningitidis serogroup X | 1.0 Neisseria meningitidis group Y 103482001 | Neisseria meningitidis serogroup Y | 3.0 3.0 - Changed the SNOMED CT mapping description from 'Neisseria meningitidis serogroup Y' to 'Neisseria meningitidis group Y' 2.0 - Changed preferred name (was NEISSERIA MENINGITIDIS GROUP Y) 1.0 - Added by PUTS project Neisseria meningitidis group Z 125042005 | Neisseria meningitidis serogroup Z | 2.0 2.0 - Changed preferred name (was NEISSERIA MENINGITIDIS GROUP Z) 1.0 - Added by PUTS project Neisseria meningitidis non-typeable 414810006 | Neisseria meningitidis non-groupable | 2.0 2.0 - Changed the SNOMED CT mapping description from 'Neisseria meningitidis non- typable' to 'Neisseria meningitidis non-groupable' 1.0 - Added by PUTS project Neisseria mucosa 81795000 | Neisseria mucosa | 1.0 Neisseria parelongata 113894007 | Neisseria weaveri | 1.0 Neisseria polysaccharea 66768001 | Neisseria polysaccharea | 1.0 Neisseria sicca 49074002 | Neisseria sicca | 2.0 2.0 - Changed preferred name (was NEISSERIA SICCA) 1.0 - Added by PUTS project Neisseria sp. 59083001 | Neisseria species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131340008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Neisseria subflava 77700001 | Neisseria subflava | 2.0 2.0 - Changed preferred name (was NEISSERIA SUBFLAVA) 1.0 - Added by PUTS project Neisseria subflava biovar flava 414812003 | Neisseria subflava biovar flava | 1.0 Neisseria subflava biovar perflava 414813008 | Neisseria subflava biovar perflava | 1.0 Neisseriaceae 115072003 | Neisseriaceae | 1.0 Nipah virus 115511007 | Nipah virus | 1.0 Nocardia abscessus 414863003 | Nocardia abscessus | 1.0 Nocardia africana 417342004 | Nocardia africana | 1.0 Nocardia asteroides 30092002 | Nocardia asteroides | 2.0 2.0 - Changed preferred name (was NOCARDIA ASTEROIDES) 1.0 - Added by PUTS project Nocardia asteroides complex 414864009 | Nocardia asteroides complex | 1.0 Nocardia beijingensis 430848001 | Nocardia beijingensis | 2.0 2.0 - Changed preferred name (was NOCARDIA BEIJINGENSIS) 1.0 - Added by PUTS project Nocardia brasiliensis 58970008 | Nocardia brasiliensis | 2.0 2.0 - Changed preferred name (was NOCARDIA BRASILIENSIS) 1.0 - Added by PUTS project Nocardia brevicatena 70366009 | Nocardia brevicatena | 2.0 2.0 - Changed preferred name (was NOCARDIA BREVICATENA) 1.0 - Added by PUTS project Nocardia brevicatena complex 131342000 | Nocardia brevicatena complex | 1.0 Nocardia carnea 61208001 | Nocardia carnea | 1.0 Nocardia cyriacigeorgica 414866006 | Nocardia cyriacigeorgica | 1.0 Nocardia farcinica 85516007 | Nocardia farcinica | 2.0 2.0 - Changed preferred name (was NOCARDIA FARCINICA) 1.0 - Added by PUTS project Nocardia flavorosea 430652004 | Nocardia flavorosea | 1.0 Nocardia nova 37621001 | Nocardia nova | 2.0 2.0 - Changed preferred name (was NOCARDIA NOVA) 1.0 - Added by PUTS project Nocardia otitidis caviarum 63087008 | Nocardia otitidis caviarum | 2.0 2.0 - Changed preferred name (was NOCARDIA OTITIDISCAVIARUM) 1.0 - Added by PUTS project Nocardia paucivorans 414867002 | Nocardia paucivorans | 2.0 2.0 - Changed preferred name (was NOCARDIA PAUCIVORANS) 1.0 - Added by PUTS project Nocardia pseudobrasiliensis 414868007 | Nocardia pseudobrasiliensis | 1.0 Nocardia sp. 59674005 | Nocardia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 127524009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Nocardia transvalensis 80379008 | Nocardia transvalensis | 2.0 2.0 - Changed preferred name (was NOCARDIA TRANSVALENSIS) 1.0 - Added by PUTS project Nocardia veterana 414869004 | Nocardia veterana | 1.0 Nocardiaceae 409836008 | Nocardiaceae | 1.0 Nocardioides sp. 114076006 | Nocardioides species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131392004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Nocardiopsaceae 425792001 | Nocardiopsaceae | 1.0 Nocardiopsis dassonvillei 15526005 | Nocardiopsis dassonvillei | 1.0

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Nocardiopsis sp. 23593005 | Nocardiopsis species | 3.0 3.0 - Changed SNOMED code from 131343005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Nonfermenting Gram-Negative Bac. (asaccharolytic) 243328000 | Non-fermentative Gram-negative bacillus | 1.0 Nonfermenting Gram-Negative Bac.(Saccharolytic) 243312005 | Fermentative Gram-negative bacillus | 1.0 Non-haemolytic Streptococcus 22339002 | Gamma-haemolytic streptococcus | 1.0 Norwalk Agent 10514003 | Norwalk virus | 1.0 Obesumbacterium proteus 28501001 | Obesumbacterium proteus | 1.0 Obesumbacterium sp. 50732004 | Obesumbacterium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131274009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Oceanospirillaceae 417064003 | Oceanospirillaceae | 1.0 Ochrobactrum anthropi 116490002 | Ochrobactrum anthropi | 1.0 Ochrobactrum intermedium 414926008 | Ochrobactrum intermedium | 1.0 Ochrobactrum sp. 116423005 | Ochrobactrum species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116489006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Ochroconis constricta 116451001 | Ochroconis constricta | 1.0 Ochroconis gallopavum 116453003 | Ochroconis gallopava | 1.0 Ochroconis sp. 116450000 | Ochroconis species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116452008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Oerskovia sp. 81194007| Oerskovia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 113900007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Oerskovia turbata 114197005 | Cellulomonas turbata | 3.0 3.0 - Changed SNOMED code from 10459009 as it is now inactive 1.0 - Added by PUTS project Oligella sp. 112343001 | Oligella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131344004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Oligella ureolytica 11309009 | Oligella ureolytica | 1.0 Oligella urethralis 90341001 | Oligella urethralis | 1.0 Olsenella uli 433487008 | Olsenella uli | 1.0 Onchocerca volvulus 52397001 | Onchocerca volvulus | 1.0 Onychocola canadensis 116449000 | Onychocola canadensis | 1.0 Onychocola sp. 116447003 | Onychocola species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116448008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Onygenales 414964005 | Onygenales | 1.0 Ophiostomataceae 425660008 | Ophiostomataceae | 1.0 Opisthorchis felineus 1846000 | Opisthorchis felineus | 1.0 Opisthorchis sp. 42463004 | Opisthorchis species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 419799003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Opisthorchis viverrini 71650008 | Opisthorchis viverrini | 1.0 Orf virus 64753004 | Orf virus | 2.1 2.1 - Changed preferred name (was Orf Virus) 1.0 - Added by PUTS project Orientia sp. 114232006 | Orientia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131423003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Orthopoxvirus 29724001 | Orthopoxvirus species | 1.0 Oscillospiraceae 417379001 | Oscillospiraceae | 1.0 Oxalobacteraceae 409855008 | Oxalobacteraceae | 1.0 Paecilomyces lilacinus 243514005 | Paecilomyces lilacinus | 1.0 Paecilomyces marquandii 88336005 | Paecilomyces marquandii | 2.0 2.0 - Changed preferred name (was PAECILOMYCES MARQUANDII) 1.0 - Added by PUTS project Paecilomyces sp. 26001000 | Paecilomyces species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372326000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Paecilomyces variotii 20035009 | Paecilomyces variotii | 1.0 Paecilomyces viridis 243515006 | Paecilomyces viridis | 2.0 2.0 - Changed preferred name (was PAECILOMYCES VIRIDIS) 1.0 - Added by PUTS project Paenibacillaceae 414213002 | Paenibacillaceae | 1.0 Paenibacillus (Bacillus) alvei 114088008 | Paenibacillus alvei | 1.0 Paenibacillus (Bacillus) amylolyticus 114089000 | Paenibacillus amylolyticus | 1.0 Paenibacillus (Bacillus) thiaminolyticus 114106008 | Paenibacillus thiaminolyticus | 1.0 Paenibacillus larvae 114098002 | Paenibacillus larvae | 1.0 Paenibacillus popilliae 414990008 | Paenibacillus popilliae | 1.0 Paenibacillus sp. 114086007 | Paenibacillus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 127542004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Paenibacillus validus 114107004 | Paenibacillus validus | 1.0 Pandoraea apista 414999009 | Pandoraea apista | 1.0 Pandoraea norimbergensis 415000009 | Pandoraea norimbergensis | 1.0 Pandoraea pnomenusa 415001008 | Pandoraea pnomenusa | 1.0 Pandoraea pulmonicola 415002001 | Pandoraea pulmonicola | 1.0 Pandoraea sp. 414998001 | Pandoraea species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 415003006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Pandoraea sputorum 415004000 | Pandoraea sputorum | 1.0 Pantoea agglomerans 115015008 | Pantoea agglomerans | 1.0 Pantoea ananatis 115014007 | Pantoea ananatis | 1.0 Pantoea dispersa 115017000 | Pantoea dispersa | 1.0 Pantoea sp. 115013001 | Pantoea species | 1.0 Papillomaviridae 407453000 | Family Papillomaviridae | 1.0 Papillomavirus 243584004 | Papillomavirus species | 1.0 Paracoccidioides brasiliensis 61449004 | Paracoccidioides brasiliensis | 1.0 Paragonimus mexicanus 17218004 | Paragonimus mexicanus | 1.0 Paragonimus westermanii 58412002 | Paragonimus westermanii | 2.0 2.0 - Changed preferred name (was Paragonimus westermani) 1.0 - Added by PUTS project Parainfluenza 1 407489008 | Human parainfluenza virus 1 | 1.0 Parainfluenza 2 407491000 | Human parainfluenza virus 2 | 1.0 Parainfluenza 3 407493002 | Human parainfluenza virus 3 | 1.0 Parainfluenza 4 89117003 | Human parainfluenza virus 4 | 1.0 Paramyxoviridae 128354001 | Paramyxoviridae | 1.0 Parapoxvirus 70275008 | Parapoxvirus species | 1.0 Parasarcophaga sp. 20730009 | Sarcophaga species | 3.0 3.0 - Changed SNOMED code from 372344008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Parvimonas micra 434293007 | Parvimonas micra | 1.0 Parvoviridae 243587006 | Family Parvoviridae | 1.0 Parvovirus 11970002 | Genus Parvovirus | 1.0 Parvovirus B19 63603005 | B19 virus | 1.0 Parvovirus RA-1 12396006 | Rheumatoid arthritis virus | 1.0 Pasteurella aerogenes 87075007 | Pasteurella aerogenes | 2.0 2.0 - Changed preferred name (was PASTEURELLA AEROGENES) 1.0 - Added by PUTS project

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Pasteurella avium 429411001 | Avibacterium avium | 1.0 Pasteurella bettyae 113902004 | Pasteurella bettyae | 1.0 Pasteurella canis 7784009 | Pasteurella canis | 1.0 Pasteurella dagmatis 80948000 | Pasteurella dagmatis | 1.0 Pasteurella haemolytica/trehalosi 434147000 | Bibersteinia trehalosi | 1.0 Pasteurella multocida 10879005 | Pasteurella multocida | 1.0 Pasteurella pneumotropica 32562008 | Pasteurella pneumotropica | 1.0 Pasteurella sp. 87579009 | Pasteurella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131346002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Pasteurella stomatis 46827009 | Pasteurella stomatis | 1.0 Pediculus humanus capitis 29568001 | Pediculus humanus capitis | 2.0 2.0 - Changed preferred name (was Pediculus humanus capitus) 1.0 - Added by PUTS project Pediculus humanus humanus 84936006 | Pediculus humanus | 1.0 Pediococcus acidilactici 243237003 | Pediococcus acidilactici | 1.0 Pediococcus damnosus 243238008 | Pediococcus damnosus | 1.0 Pediococcus dextrinicus 243239000 | Pediococcus dextrinicus | 1.0 Pediococcus parvulus 243241004 | Pediococcus parvulus | 1.0 Pediococcus pentosaceus 243242006 | Pediococcus pentosaceus | 2.0 2.0 - Changed preferred name (was PEDIOCOCCUS PENTOSACEUS) 1.0 - Added by PUTS project Pediococcus sp. 243236007 | Pediococcus species | 3.0 3.0 - Changed SNOMED code from 419110005 which is now inactive due to SNOMED policy change 2.0 - Changed preferred name (was PEDIOCOCCUS SP.) 1.0 - Added by PUTS project Pedobacter heparinus 113554004 | Pedobacter heparinus | 1.0 Pedobacter piscium 113555003 | Pedobacter piscium | 1.0 Pedobacter sp. 115128003 | Pedobacter species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131236001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Penicillium glabrum 5516003 | Penicillium glaucum | 1.0 Penicillium marneffei 71825007 | Penicillium marneffei | 1.0 Penicillium sp. 42993004 | Penicillium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372329007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Penicillium verruculosum 82397008 | Penicillium verruculosum | 2.0 2.0 - Changed preferred name (was PENICILLIUM VERRUCULOSUM) 1.0 - Added by PUTS project Peptococcaceae 426458005 | Peptococcaceae | 1.0 Peptococcus niger 112344007 | Peptococcus niger | 1.0 Peptococcus sp. 20585006 | Peptococcus species | 1.0 Peptoniphilus (Peptostrept.) asaccharolyticus 433440001 | Peptoniphilus asaccharolyticus | 1.0 Peptoniphilus harei 433373007 | Peptoniphilus harei | 1.0 Peptoniphilus indolicus 433374001 | Peptoniphilus indolicus | 1.0 Peptoniphilus ivorii 433375000 | Peptoniphilus ivorii | 1.0 Peptoniphilus lacrimalis 433376004 | Peptoniphilus lacrimalis | 1.0 Peptostreptococcaceae 414215009 | Family Peptostreptococcaceae | 1.0 Peptostreptococcus anaerobiu 19217002 | Peptostreptococcus anaerobius | 2.0 2.0 - Changed preferred name (was PEPTOSTREPTOCOCCUS ANAEROBIUS) 1.0 - Added by PUTS project Peptostreptococcus asaccharolyticus 89268006 | Peptostreptococcus asaccharolyticus | 2.0 2.0 - Changed preferred name (was PEPTOSTREPTOCOCCUS ASACCHAROLYTICUS) 1.0 - Added by PUTS project

Peptostreptococcus indolicus 19204000 | Peptostreptococcus indolicus | 2.0 2.0 - Changed preferred name (was PEPTOSTREPTOCOCCUS INDOLICUS) 1.0 - Added by PUTS project Peptostreptococcus magnus 417469002 | Finegoldia magna | 2.0 2.0 - Changed preferred name (was PEPTOSTREPTOCOCCUS MAGNUS) 1.0 - Added by PUTS project Peptostreptococcus micros 62890009 | Peptostreptococcus micros | 2.0 2.0 - Changed preferred name (was PEPTOSTREPTOCOCCUS MICROS) 1.0 - Added by PUTS project Peptostreptococcus parvulus 113631003 | Atopobium parvulum | 1.0 Peptostreptococcus productus 698205008 | Blautia producta | 2.1 2.1 - Changed SNOMED code (was 113946007 | Ruminococcus productus |) 1.0 - Added by PUTS project Peptostreptococcus saccharolyticus 302585007 | Peptostreptococcus saccharolyticus | 1.0 Peptostreptococcus sp. 243417000 | Peptostreptococcus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116491003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Peptostreptococcus tretradius 413524006 | Anaerococcus tretradius | 2.0 2.0 - Changed preferred name (was PEPTOSTREPTOCOCCUS TETRADIUS) 1.0 - Added by PUTS project Pestalotia sp. 424485000 | Pestalotiopsis | 1.0 Phaeoacremonium parasiticum 415950000 | Phaeoacremonium parasiticum | 1.0 Phaeoacremonium sp. 415948008 | Phaeoacremonium species | 3.0 3.0 - Changed species abbreviation in preferred name from sp; Changed SNOMED code from 415952008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Plesiomonas sp. 42929008 | Plesiomonas species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131347006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Pneumocystidaceae 414218006 | Pneumocystidaceae | 1.0 Pneumocystis jiroveci (carinii) 79909001 | Pneumocystis jirovecii | 1.0 Poliovirus 44172002 | Human poliovirus | 1.0 Poliovirus type 1 22580008 | Human poliovirus 1 | 1.0 Poliovirus type 2 55174004 | Human poliovirus 2 | 1.0 Poliovirus type 3 16362001 | Human poliovirus 3 | 1.0 Polyomaviridae 407455007 | Family Polyomaviridae | 1.0 Polyomavirus 407456008 | Genus Polyomavirus | 1.0 Porphyromonadaceae 409810001 | Porphyromonadaceae | 1.0 Porphyromonas asacharolytica 433018004 | Porphyromonas asaccharolytica | 1.0 Porphyromonas cangingivalis 114156003 | Porphyromonas cangingivalis | 1.0 Porphyromonas canoris 114157007 | Porphyromonas canoris | 1.0 Porphyromonas cansulci 114158002 | Porphyromonas cansulci | 1.0 Porphyromonas catoniae 114159005 | Porphyromonas catoniae | 1.0 Porphyromonas circumdentaria 114160000 | Porphyromonas circumentaria | 1.0 Porphyromonas crevioricanis 114161001 | Porphyromonas crevioricanis | 1.0 Porphyromonas endodontalis 2401005 | Porphyromonas endodontalis | 1.0 Porphyromonas gingivicanis 114164009 | Porphyromonas gingivicanis | 1.0 Porphyromonas gulae 433019007 | Porphyromonas gulae | 1.0 Porphyromonas macacae 114166006 | Porphyromonas macacae | 1.0 Porphyromonas sp. 114154000 | Porphyromonas species | 3.0 3.0 - Changed SNOMED code from 131398000 which is now inactive due to SNOMED policy change 2.0 - Changed preferred name (was PORPHYROMONAS SP.) 1.0 - Added by PUTS project Poxvirus 424976006 | Poxviridae | 1.0 Pragia fontium 115025003 | Pragia fontium | 1.0 Pragia sp. 115024004 | Pragia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131306008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Prevotella bivia 114131009 | Prevotella bivia | 1.0 Prevotella buccae 114134001 | Prevotella buccae | 2.0 2.0 - Changed preferred name (was PREVOTELLA BUCCAE) 1.0 - Added by PUTS project Prevotella buccalis 114135000 | Prevotella buccalis | 1.0 Prevotella corporis 114136004 | Prevotella corporis | 2.0 2.0 - Changed preferred name (was PREVOTELLA CORPORIS) 1.0 - Added by PUTS project Prevotella dentalis 114137008 | Prevotella dentalis | 1.0 Prevotella denticola 114138003 | Prevotella denticola | 1.0 Prevotella disiens 114139006 | Prevotella disiens | 2.0 2.0 - Changed preferred name (was PREVOTELLA DISIENS) 1.0 - Added by PUTS project Prevotella enoeca 114140008 | Prevotella enoeca | 1.0 Prevotella heparinolytica 114141007 | Prevotella heparinolytica | 1.0 Prevotella intermedia 114142000 | Prevotella intermedia | 2.0 2.0 - Changed preferred name (was PREVOTELLA INTERMEDIA) 1.0 - Added by PUTS project Prevotella loescheii 114143005 | Prevotella loescheii | 1.0 Prevotella marshii 417919003 | Prevotella marshii | 1.0 Prevotella melaninogenica 114144004 | Prevotella melaninogenica | 1.0 Prevotella multiformis 418615005 | Prevotella multiformis | 1.0 Prevotella multisaccharivorax 418858007 | Prevotella multisaccharivorax | 1.0 Prevotella nigrescens 114145003 | Prevotella nigrescens | 1.0 Prevotella oralis 114146002 | Prevotella oralis | 1.0 Prevotella oris 114147006 | Prevotella oris | 2.0 2.0 - Changed preferred name (was PREVOTELLA ORIS) 1.0 - Added by PUTS project Prevotella oulora 419466004 | Prevotella oulorum | 1.0 Prevotella pallens 114149009 | Prevotella pallens | 1.0 Prevotella ruminicola 115949003 | Prevotella ruminicola | 1.0 Prevotella salivae 418278009 | Prevotella salivae | 1.0 Prevotella shahii 419720005 | Prevotella shahii | 1.0 Prevotella sp. 114129000 | Prevotella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131397005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Prevotella tannerae 114151008 | Prevotella tannerae | 1.0 Prevotella zoogleoformans 425729002 | Bacteroides zoogleoformans | 1.0 Promicromonosporaceae 409859002 | Promicromonosporaceae | 1.0 Propionibacteriaceae 414219003 | Propionibacteriaceae | 1.0 Propionibacterium acnes 39473003 | Propionibacterium acnes | 2.0 2.0 - Changed preferred name (was PROPIONIBACTERIUM ACNES) 1.0 - Added by PUTS project Propionibacterium avidum 47473006 | Propionibacterium avidum | 2.0 2.0 - Changed preferred name (was PROPIONIBACTERIUM AVIDUM) 1.0 - Added by PUTS project Propionibacterium granulosum 87755005 | Propionibacterium granulosum | 2.0 2.0 - Changed preferred name (was PROPIONIBACTERIUM GRANULOSUM) 1.0 - Added by PUTS project Propionibacterium propionicum 427413007 | Propionibacterium propionicum | 1.0 Propionibacterium sp. 34844008 | Propionibacterium species | 3.0 3.0 - Changed SNOMED code from 131348001 which is now inactive due to SNOMED policy change 2.0 - Changed preferred name (was PROPIONIBACTERIUM SP.) 1.0 - Added by PUTS project Proteus hauseri 417592004 | Proteus hauseri | 1.0 Proteus mirabilis 73457008 | Proteus mirabilis | 2.0 2.0 - Changed preferred name (was PROTEUS MIRABILIS) 1.0 - Added by PUTS project Proteus myxofaciens 86145008 | Proteus myxofaciens | 1.0 Proteus penneri 45298005 | Proteus penneri | 2.0 2.0 - Changed preferred name (was PROTEUS PENNERI) 1.0 - Added by PUTS project Proteus sp. 50517009 | Proteus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131275005 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Proteus vulgaris 45834001 | Proteus vulgaris | 2.0 2.0 - Changed preferred name (was PROTEUS VULGARIS) 1.0 - Added by PUTS project Prototheca sp. 37563009 | Prototheca species | 1.0 Prototheca wickerhamii 70523003 | Prototheca wickerhamii | 2.0 2.0 - Changed preferred name (was PROTOTHECA WICKERHAMII) 1.0 - Added by PUTS project Prototheca zopfii 32768009 | Prototheca zopfii | 1.0 Providencia alcalifaciens 46349009 | Providencia alcalifaciens | 1.0 Providencia rettgeri 14196002 | Providencia rettgeri | 2.0 2.0 - Changed preferred name (was PROVIDENCIA RETTGERI) 1.0 - Added by PUTS project Providencia rustigianii 19196004 | Providencia rustigianii | 1.0 Providencia sp. 112284001 | Providencia species | 3.0 3.0 - Changed SNOMED code from 131276006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Providencia stuartii 1445008 | Providencia stuartii | 2.0 2.0 - Changed preferred name (was PROVIDENCIA STUARTII) 1.0 - Added by PUTS project Pseudallescheria boydii 91088000 | Pseudallescheria boydii | 2.0 2.0 - Changed preferred name (was PSEUDALLESCHERIA BOYDII) 1.0 - Added by PUTS project

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Pseudallescheria sp. 54930009 | Pseudallescheria species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372335007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Pseudomonas aeruginosa 52499004 | Pseudomonas aeruginosa | 2.0 2.0 - Changed preferred name (was PSEUDOMONAS AERUGINOSA) 1.0 - Added by PUTS project Pseudomonas alcaligenes 46247008 | Pseudomonas alcaligenes | 2.0 2.0 - Changed preferred name (was PSEUDOMONAS ALCALIGENES) 1.0 - Added by PUTS project Pseudomonas aureofaciens 63949003 | Pseudomonas chlororaphis | 1.0 Pseudomonas fluorescens 39289003 | Pseudomonas fluorescens | 2.0 2.0 - Changed preferred name (was PSEUDOMONAS FLUORESCENS) 1.0 - Added by PUTS project Pseudomonas marginalis 116414007 | Pseudomonas marginalis | 1.0 Pseudomonas mendocina 59419001 | Pseudomonas mendocina | 2.0 2.0 - Changed preferred name (was PSEUDOMONAS MENDOCINA) 1.0 - Added by PUTS project Pseudomonas monteilii 113930004 | Pseudomonas monteilii | 1.0 Pseudomonas mosselii 437937006 | Pseudomonas mosselii | 1.0 Pseudomonas pertucinogena 17191002 | Pseudomonas pertucinogena | 1.0 Pseudomonas pseudoalcaligenes 30955004 | Pseudomonas pseudoalcaligenes | 1.0 Pseudomonas putida 68608003 | Pseudomonas putida | 2.0 2.0 - Changed preferred name (was PSEUDOMONAS PUTIDA) 1.0 - Added by PUTS project Pseudomonas sp. 57032008 | Pseudomonas species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116493000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Pseudomonas stutzeri 58024003 | Pseudomonas stutzeri | 2.0 2.0 - Changed preferred name (was PSEUDOMONAS STUTZERI) 1.0 - Added by PUTS project Pseudomonas syringae 36717009 | Pseudomonas syringae | 1.0 Pseudomonas veronii 113940001 | Pseudomonas veronii | 1.0 Pseudonocardia autotrophica 113656009 | Pseudonocardia autotrophica | 1.0 Pseudonocardia sp. 115148005 | Pseudonocardia species | 3.0 3.0 - Changed SNOMED code from 131267004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Pseudonocardiaceae 409839001 | Pseudonocardiaceae | 1.0 Pseudoramibacter sp. 115131002 | Pseudoramibacter species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131332002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Psychrobacter (Moraxella) phenylpyruvicus 113941002 | Psychrobacter phenylpyruvicus | 1.0 Psychrobacter faecalis 432699001 | Psychrobacter faecalis | 1.0 Psychrobacter immobilis 70465007 | Psychrobacter immobilis | 1.0 Psychrobacter sp. 34412002 | Psychrobacter species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131349009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Pythium insidiosum 57313005 | Pythium insidiosum | 1.0 Rabies virus 59881000 | Rabies virus | 1.0 Rahnella aquatilis 10021006 | Rahnella aquatilis | 1.0 Ralstonia (Burkholderia) pickettii bio.1 114053008 | Ralstonia pickettii | 1.0 Ralstonia (Burkholderia) thomasii 415236004 | Ralstonia mannitolilytica | 1.0 Ralstonia eutropha 415835005 | Wautersia eutropha | 1.0 Ralstonia paucula 116198003 | Ralstonia paucula | 1.0 Ralstonia solanacearum 114054002 | Ralstonia solanacearum | 1.0 Ralstonia sp. 415234001 | Ralstonia species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116199006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Ramichloridium schulzeri 76161003 | Ramichloridium schulzeri | 2.0 2.0 - Changed preferred name (was RAMICHLORIDIUM SCHULZERI) 1.0 - Added by PUTS project Raoultella planticola 416264004 | Raoultella planticola | 1.0 Reoviridae 243590000 | Family Reoviridae | 1.0 Reovirus 243591001 | Orthoreovirus | 1.0 Respiratory Syncytial virus 6415009 | Human respiratory syncytial virus | 1.0 Retortomonas intestinalis 87569007 | Retortamonas intestinalis | 1.0 Retrovirus 77622001 | Family Retroviridae | 1.0 Rhabdovirus 407327007 | Genus Rhabdovirus | 1.0 Rhinocladiella aquaspersa 45462000 | Rhinocladiella aquaspersa | 1.0 Rhinocladiella atrovirens 243545009 | Rhinocladiella atrovirens | 2.0 2.0 - Changed preferred name (was RHINOCLADIELLA ATROVIRENS) 1.0 - Added by PUTS project Rhinocladiella mackenziei 243543002 | Ramichloridium mackenziei | 3.0 3.0 - Added by PITUS-16 Working group 3 Rhinovirus 1838001 | human rhinovirus | 2.1 2.1 - Change SNOMED code (was 90389005 | Genus Rhinovirus |) 1.0 - Added by PUTS project Rhizobiaceae 414220009 | Rhizobiaceae | 1.0 Rhizobium (Agrobacterium) radiobacter 438107000 | Rhizobium radiobacter | 1.0 Rhizobium (Agrobacterium) rubi 438073004 | Rhizobium rubi | 1.0 Rhizobium sp. 415303003 | Rhizobium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 415325009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Rhizoctonia spp. 30505003 | Rhizoctonia | 3.0 3.0 - Changed species class abbreviation in preferred name from spp 1.0 - Added by PUTS project Rhizomucor miehei 61389009 | Rhizomucor miehei | 1.0 Rhizomucor pusillus 70399006 | Rhizomucor pusillus | 2.0 2.0 - Changed preferred name (was RHIZOMUCOR PUSILLUS) 1.0 - Added by PUTS project Rhizomucor sp. 85711000 | Rhizomucor species | 3.0 3.0 - Changed species abbreviation in preferred name from sp 1.0 - Added by PUTS project Rhizomucor tauricus 15709001 | Rhizomucor tauricus | 1.0 Rhizopus homothallicus 44643002 | Rhizopus homothalicus | 1.0 Rhizopus microsporus 14504004 | Rhizopus microsporus | 1.0 Rhizopus oryzae 87002009 | Rhizopus arrhizus | 1.0 Rhizopus sp. 17683005 | Rhizopus species | 3.0 3.0 - Changed SNOMED code from 372339001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Rhizopus stolonifer 37060000 | Rhizopus stolonifer | 1.0 Rhodobacter massiliensis 433974009 | Haematobacter massiliensis | 1.0 Rhodobacter sp. 415331007 | Rhodobacter species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 415332000 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Rhodobacteraceae 414221008 | Rhodobacteraceae | 1.0 Rhodococcus aurantica 113510005 | Tsukamurella paurometabola | 1.0 Rhodococcus coprophilus 2621000 | Rhodococcus coprophilus | 1.0 Rhodococcus erythropolis 22478004 | Rhodococcus erythropolis | 1.0 Rhodococcus fascians 28901005 | Rhodococcus fascians | 1.0 Rhodococcus globerulus 44348004 | Rhodococcus globerulus | 1.0 Rhodococcus gordoniae 430885009 | Rhodococcus gordoniae | 1.0 Rhodococcus marinonascens 46065003 | Rhodococcus marinonascens | 1.0 Rhodococcus rhodnii 57205006 | Rhodococcus rhodnii | 1.0 Rhodococcus rhodochrous 54379008 | Rhodococcus rhodochrous | 1.0 Rhodococcus ruber 112347000 | Rhodococcus ruber | 1.0 Rhodococcus sp. 34534002 | Rhodococcus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131350009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Rhodotorula glutinus 69250004 | Rhodotorula glutinis | 1.0

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Shigella flexneri 85729005 | Shigella flexneri | 2.0 2.0 - Changed preferred name (was SHIGELLA FLEXNERI) 1.0 - Added by PUTS project Shigella flexneri 1 125005003 | Shigella flexneri, serovar 1 | 1.0 Shigella flexneri 1a 125006002 | Shigella flexneri, serovar 1a | 1.0 Shigella flexneri 1b 125007006 | Shigella flexneri, serovar 1b | 1.0 Shigella flexneri 2 125008001 | Shigella flexneri, serovar 2 | 1.0 Shigella flexneri 2a 125009009 | Shigella flexneri, serovar 2a | 1.0 Shigella flexneri 2b 125010004 | Shigella flexneri, serovar 2b | 1.0 Shigella flexneri 3 125011000 | Shigella flexneri, serovar 3 | 1.0 Shigella flexneri 3a 125012007 | Shigella flexneri, serovar 3a | 1.0 Shigella flexneri 3b 125013002 | Shigella flexneri, serovar 3b | 1.0 Shigella flexneri 3c 125014008 | Shigella flexneri, serovar 3c | 1.0 Shigella flexneri 4 125015009 | Shigella flexneri, serovar 4 | 1.0 Shigella flexneri 4a 125016005 | Shigella flexneri, serovar 4a | 1.0 Shigella flexneri 4b 125017001 | Shigella flexneri, serovar 4b | 1.0 Shigella flexneri 5 125018006 | Shigella flexneri, serovar 5 | 1.0 Shigella flexneri 5a 406501003 | Shigella flexneri 5a [V:3,4] | 1.0 Shigella flexneri 5b 406502005 | Shigella flexneri 5b [V:7,8] | 1.0 Shigella flexneri 6 125019003 | Shigella flexneri, serovar 6 | 1.0 Shigella flexneri untypable 406503000 | Shigella flexneri serotype undetermined (Subgroup B) | 1.0 Shigella flexneri var X 125020009 | Shigella flexneri, serovar X | 1.0 Shigella flexneri var Y 125021008 | Shigella flexneri, serovar Y | 1.0 Shigella sonnei 4298009 | Shigella sonnei | 1.0 Shigella sonnei biotype d 406504006 | Shigella sonnei (Subgroup D) | 1.0 Shigella sp. 77352002 | Shigella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116498009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Simonsiella crassa 444924000 | Alysiella crassa | 1.0 Simonsiella muelleri 74269008 | Simonsiella muelleri | 1.0 Simonsiella sp. 16344005 | Simonsiella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131355004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Simonsiella steedae 51548007 | Simonsiella steedae | 1.0 Sindbis 30681002 | Sindbis virus | 1.0 Slackia exigua 434236002 | Slackia exigua | 1.0 Slackia heliotrinireducens 437984006 | Slackia heliotrinireducens | 1.0 Small round structured virus 407359000 | Norovirus | 1.0 Solobacterium sp. 415558001 | Solobacterium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 413349009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Spegazzinia sp. 419763008 | Spegazzinia | 3.0 3.0 - Changed preferred name from sp 1.0 - Added by PUTS project Sphingobacteriaceae 425956007 | Sphingobacteriaceae | 1.0 Sphingobacterium faecium 113953003 | Sphingobacterium faecium | 1.0 Sphingobacterium multivorum 51595006 | Sphingobacterium multivorum | 1.0 Sphingobacterium sp. 43780008 | Sphingobacterium species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131357007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Sphingobacterium spiritivorum 61675006 | Sphingobacterium spiritivorum | 1.0 Sphingobacterium thalpophilum 113954009 | Sphingobacterium thalpophilum | 1.0 Sphingomonadaceae 414224000 | Sphingomonadaceae | 1.0 Sphingomonas capsulata 113741008 | Sphingomonas capsulata | 1.0 Sphingomonas parapaucimobilis 243349004 | Sphingomonas parapaucimobilis | 1.0 Sphingomonas paucimobilis 243350004 | Sphingomonas paucimobilis | 2.0 2.0 - Changed preferred name (was SPHINGOMONAS PAUCIMOBILIS) 1.0 - Added by PUTS project Sphingomonas sp. 115130001 | Sphingomonas species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131235002 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Spirillum minus 35164008 | Spirillum minus | 1.0 Spirochaetes 419328001 | Class Spirochaetes | 1.0 Sporobolomyces salmonicolor 243446007 | Sporobolomyces salmonicolor | 1.0 Sporothrix schenkii 32662000 | Sporothrix schenkii | 2.0 2.0 - Changed preferred name (was SPOROTHRIX SCHENCKII) 1.0 - Added by PUTS project Staphylococcaceae 414225004 | Staphylococcaceae | 1.0 Staphylococcus arlettae 72465001 | Staphylococcus arlettae | 1.0 Staphylococcus aureus 3092008 | Staphylococcus aureus | 1.0 Staphylococcus auricularis 45654003 | Staphylococcus auricularis | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS AURICULARIS) 1.0 - Added by PUTS project Staphylococcus capitis 40347003 | Staphylococcus capitis | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS CAPITIS) 1.0 - Added by PUTS project Staphylococcus caprae 76969000 | Staphylococcus caprae | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS CAPRAE) 1.0 - Added by PUTS project Staphylococcus carnosus 9784002 | Staphylococcus carnosus | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS CARNOSUS) 1.0 - Added by PUTS project Staphylococcus carnosus subsp carnosus 438905007 | Staphylococcus carnosus carnosus | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Staphylococcus carnosus subsp utilis 438733001 | Staphylococcus carnosus utilis | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Staphylococcus caseolyticus 416613009 | Macrococcus caseolyticus | 1.0 Staphylococcus chromogenes 56629004 | Staphylococcus chromogenes | 1.0 Staphylococcus cohnii 66872005 | Staphylococcus cohnii | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS COHNII) 1.0 - Added by PUTS project Staphylococcus cohnii spp. cohnii 113963006 | Staphylococcus cohnii ss cohnii | 3.0 3.0 - Changed species class abbreviation in preferred name from spp 1.0 - Added by PUTS project Staphylococcus cohnii ssp. urealyticus 103493004 | Staphylococcus cohnii subspecies urealyticus | 3.0 3.0 - Changed species class abbreviation in preferred name from spp 1.0 - Added by PUTS project Staphylococcus condimenti 439185000 | Staphylococcus condimenti | 1.0 Staphylococcus delphin 113964000 | Staphylococcus delphini | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS DELPHINI) 1.0 - Added by PUTS project Staphylococcus epidermidis 60875001 | Staphylococcus epidermidis | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS EPIDERMIDIS) 1.0 - Added by PUTS project Staphylococcus equorum 28217008 | Staphylococcus equorum | 1.0 Staphylococcus felis 113965004 | Staphylococcus felis | 1.0 Staphylococcus fleurettii 438257002 | Staphylococcus fleurettii | 1.0 Staphylococcus gallinarum 8056006 | Staphylococcus gallinarum | 1.0 Staphylococcus haemolyticus 83452006 | Staphylococcus haemolyticus | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS HAEMOLYTICUS) 1.0 - Added by PUTS project Staphylococcus hominis 44827007 | Staphylococcus hominis | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS HOMINIS) 1.0 - Added by PUTS project Staphylococcus hominis subsp hominis 432505008 | Staphylococcus hominis hominis | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Staphylococcus hyicus 19683001 | Staphylococcus hyicus | 1.0 Staphylococcus intermedius 34605002 | Staphylococcus intermedius | 1.0 Staphylococcus kloosii 53227003 | Staphylococcus kloosii | 1.0 Staphylococcus lentus 40253001 | Staphylococcus lentus | 1.0 Staphylococcus lugdunensis 103494005 | Staphylococcus lugdunensis | 1.0

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Staphylococcus lutrae 113968002 | Staphylococcus lutrae | 1.0 Staphylococcus muscae 113969005 | Staphylococcus muscae | 1.0 Staphylococcus nepalensis 438681002 | Staphylococcus nepalensis | 1.0 Staphylococcus pasteuri 103495006 | Staphylococcus pasteuri | 1.0 Staphylococcus piscifermentans 113970006 | Staphylococcus piscifermentans | 1.0 Staphylococcus saccharolyticus 41103009 | Staphylococcus saccharolyticus | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS SACCHAROLYTICUS) 1.0 - Added by PUTS project Staphylococcus saprophyticus 19743000 | Staphylococcus saprophyticus | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS SAPROPHYTICUS) 1.0 - Added by PUTS project Staphylococcus schleiferi 131360000 | Staphylococcus schleiferi | 1.0 Staphylococcus sciuri 70806002 | Staphylococcus sciuri | 1.0 Staphylococcus sciuri subsp carnaticus 113975001 | Staphylococcus sciuri carnaticus | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Staphylococcus sciuri subsp rodentium 113976000 | Staphylococcus sciuri rodentium | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Staphylococcus simulans 52122005 | Staphylococcus simulans | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS SIMULANS) 1.0 - Added by PUTS project Staphylococcus sp. 65119002 | Staphylococcus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116499001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Staphylococcus succinus subsp casei 440815004 | Staphylococcus succinus casei | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Staphylococcus succinus subsp succinus 441130000 | Staphylococcus succinus succinus | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Staphylococcus vitulinus 440569005 | Staphylococcus vitulinus | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS VITULINUS) 1.0 - Added by PUTS project Staphylococcus warneri 63550006 | Staphylococcus warneri | 2.0 2.0 - Changed preferred name (was STAPHYLOCOCCUS WARNERI) 1.0 - Added by PUTS project Staphylococcus xylosus 32737005 | Staphylococcus xylosus | 1.0 Stemphylium sp. 90824006 | Stemphylium species | 1.0 Stenotrophomonas maltophilia 113697002 | Stenotrophomonas maltophilia | 2.0 2.0 - Changed preferred name (was STENOTROPHOMONAS MALTOPHILIA) 1.0 - Added by PUTS project Stenotrophomonas sp. 115656007 | Stenotrophomonas species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116400007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Stephanoascus ciferrii 415966003 | Stephanoascus ciferrii | 2.0 2.0 - Changed preferred name (was STEPHANOASCUS CIFERRII) 1.0 - Added by PUTS project Stratford virus 48439003 | Stratford virus | 2.1 2.1 - Changed preferred name (was Stratford Virus) 1.0 - Added by PUTS project Streptobacillus moniliformis 16372003 | Streptobacillus moniliformis | 2.0 2.0 - Changed preferred name (was STREPTOBACILLUS MONILIFORMIS) 1.0 - Added by PUTS project Streptobacillus sp. 29295005 | Streptobacillus species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 419405003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Streptococcaceae 115107007 | Streptococcaceae | 1.0 Streptococcus acidominimus 51182006 | Streptococcus acidominimus | 2.0 2.0 - Changed preferred name (was STREPTOCOCCUS ACIDOMINIMUS) 1.0 - Added by PUTS project Streptococcus alactolyticus 34228005 | Streptococcus alactolyticus | 2.0 2.0 - Changed preferred name (was STREPTOCOCCUS ALACTOLYTICUS) 1.0 - Added by PUTS project Streptococcus anginosus 44304009 | Streptococcus anginosus | 2.0 2.0 - Changed preferred name (was STREPTOCOCCUS ANGINOSUS) 1.0 - Added by PUTS project Streptococcus australis 415598004 | Streptococcus australis | 1.0 Streptococcus bovis 415599007 | Streptococcus bovis group | 1.0 Streptococcus canis 88231003 | Streptococcus canis | 1.0 Streptococcus constellatus 76199005 | Streptococcus constellatus | 2.0 2.0 - Changed preferred name (was STREPTOCOCCUS CONSTELLATUS) 1.0 - Added by PUTS project Streptococcus constellatus subsp constellatus 415601009 | Streptococcus constellatus subspecies constellatus | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Streptococcus constellatus subsp pharyngis 415602002 | Streptococcus constellatus subspecies pharyngis | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Streptococcus criceti 34838009 | Streptococcus criceti | 2.0 2.0 - Changed preferred name (was Streptococcus cricetus) 1.0 - Added by PUTS project Streptococcus cristatus 113980005 | Streptococcus cristatus | 1.0 Streptococcus downei 12704003 | Streptococcus dolonei | 1.0 Streptococcus dysgalactiae 40812000 | Streptococcus dysgalactiae | 1.0 Streptococcus dysgalactiae (S.equisimils) 128338004 | Streptococcus dysgalactiae subsp. equisimilis | 1.0 Streptococcus equi 12447002 | Streptococcus equi | 1.0 Streptococcus equi subsp equi (Group C) 113984001 | Streptococcus equi subsp. equi | 1.0 Streptococcus equi subsp zooepidemicus (Group C) 33708000 | Streptococcus equi subsp. zooepidemicus | 1.0 Streptococcus equinus (bovis) 72646003 | Streptococcus equinus | 1.0 Streptococcus equisimilis 113982002 | Streptococcus dysgalactiae subsp. dysgalactiae | 2.0 2.0 - Changed preferred name (was STREPTOCOCCUS EQUISIMILIS) 1.0 - Added by PUTS project Streptococcus ferus 10049004 | Streptococcus ferus | 1.0 Streptococcus gallolyticus 113985000 | Streptococcus gallolyticus | 1.0 Streptococcus gallolyticus subsp macedonicus 421004005 | Streptococcus gallolyticus subspecies macedonicus | 1.0 Streptococcus gallolyticus subsp gallolyticus 421544007 | Streptococcus gallolyticus subspecies gallolyticus | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Streptococcus gallolyticus subsp pasteurianus 421253004 | Streptococcus gallolyticus subspecies pasteurianus | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Streptococcus gordonii 113986004 | Streptococcus gordonii | 1.0 Streptococcus group E 37916002 | Streptococcus, group E | 1.0 Streptococcus hyointestinalis 113987008 | Streptococcus hyointestinalis | 1.0 Streptococcus hyovaginalis 113988003 | Streptococcus hyovaginalis | 1.0 Streptococcus infantarius 415603007 | Streptococcus infantarius | 1.0 Streptococcus infantarius subsp coli Submit for New SNOMED code 3.0 3.0 - 437915004 | Streptococcus infantarius coli | is now inactive, need to submit for new SNOMED code 1.0 - Added by PUTS project Streptococcus infantarius subsp infantarius 432506009 | Streptococcus infantarius subspecies infantarius | 3.0 3.0 - Changed preferred name, changing 'subspecies' to subsp 1.0 - Added by PUTS project Streptococcus infantis 415604001 | Streptococcus infantis | 1.0 Streptococcus iniae 79050007 | Streptococcus iniae | 1.0 Streptococcus intermedius 62170002 | Streptococcus intermedius | 2.0 2.0 - Changed preferred name (was STREPTOCOCCUS INTERMEDIUS) 1.0 - Added by PUTS project Streptococcus lutetiensis 415605000 | Streptococcus lutetiensis | 1.0 Streptococcus macacae 59717000 | Streptococcus macacae | 1.0 Streptococcus milleri group 415597009 | Streptococcus anginosus group | 2.0 2.0 - Changed preferred name (was STREPTOCOCCUS MILLERI GROUP) 1.0 - Added by PUTS project Streptococcus mitis 57997003 | Streptococcus mitis | 2.0 2.0 - Changed preferred name (was STREPTOCOCCUS MITIS) 1.0 - Added by PUTS project Streptococcus mitis group 127539005 | Streptococcus mitis group | 2.0 2.0 - Changed preferred name (was STREPTOCOCCUS MITIS GROUP) 1.0 - Added by PUTS project Streptococcus mutans 214001 | Streptococcus mutans | 1.0 Streptococcus mutans (Viridans Group) 31703004 | Streptococcus, viridans group | 1.0 Streptococcus mutans group 127536003 | Streptococcus mutans group | 1.0 Streptococcus oralis 19870004 | Streptococcus oralis | 1.0 Streptococcus parasanguinis 113990002 | Streptococcus parasanguinis | 1.0

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Trichophyton soudanense 4983002 | Trichophyton soudanense | 2.0 2.0 - Changed preferred name (was TRICHOPHYTON SOUDANENSE) 1.0 - Added by PUTS project Trichophyton sp. 88578003 | Trichophyton species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372362004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Trichophyton terrestre 86554002 | Trichophyton terrestre | 1.0 Trichophyton tonsurans 71495007 | Trichophyton tonsurans | 1.0 Trichophyton verrucosum 26601004 | Trichophyton verrucosum | 2.0 2.0 - Changed preferred name (was TRICHOPHYTON VERRUCOSUM) 1.0 - Added by PUTS project Trichophyton violaceum 67490006 | Trichophyton violaceum | 2.0 2.0 - Changed preferred name (was TRICHOPHYTON VIOLACEUM) 1.0 - Added by PUTS project Trichosporon asahii 243475001 | Trichosporon asahii | 1.0 Trichosporon beigelii 39268007 | Trichosporon beigelii | 2.0 2.0 - Changed preferred name (was TRICHOSPORON BEIGELII) 1.0 - Added by PUTS project Trichosporon inkin 243547001 | Sarcinosporon inkin | 1.0 Trichosporon mucoides 243478004 | Trichosporon mucoides | 2.0 2.0 - Changed preferred name (was TRICHOSPORON MUCOIDES) 1.0 - Added by PUTS project Trichosporon pullulans 25783003 | Trichosporon pullulans | 2.0 2.0 - Changed preferred name (was TRICHOSPORON PULLULANS) 1.0 - Added by PUTS project Trichosporon sp. 62289009 | Trichosporon species | 1.0 Trichostrongylus sp. 20065004 | Trichostrongylus species | 3.0 3.0 - Changed SNOMED code from 372363009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Trichothecium roseum 18236002 | Trichothecium roseum | 1.0 Trichothecium sp. 70034005 | Trichothecium species | 3.0 3.0 - Changed SNOMED code from 115999004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Trichuria trichiura 41744001 | Trichuris tenuis | 1.0 Trichuris sp. 2572000 | Trichuris species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 372364003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Trichuris trichiura 5378007 | Trichuris trichiura | 1.0 Tropheryma whipplei 417060007 | Tropheryma whipplei | 2.0 2.0 - Changed preferred name (was Tropheryma whippelii) 1.0 - Added by PUTS project Trophozoites 110389002 | Entamoeba histolytica trophozoite | 1.0 Trypanosoma brucei 243659009 | Trypanosoma brucei | 1.0 Trypanosoma cruzi 88274000 | Trypanosoma cruzi | 1.0 Trypanosoma sp. 40740003 | Trypanosoma species | 3.0 3.0 - Changed SNOMED code from 372366001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Tsukamurella inchonensis 113509000 | Tsukamurella inchonensis | 1.0 Tsukamurella pulmonis 113511009 | Tsukamurella pulmonis | 1.0 Tsukamurella sp. 115135006 | Tsukamurella species | 3.0 3.0 - Changed SNOMED code from 131226009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Tsukamurella strandjordii 417316004 | Tsukamurella strandjordii | 1.0 Tsukamurella tyrosinosolvens 113512002 | Tsukamurella tyrosinosolvens | 1.0 Tsukamurellaceae 409845009 | Tsukamurellaceae | 1.0 Turicella (Corynebacterium) sp. 415762009 | Turicella species | 1.0 Turicella otitidis 415763004 | Turicella otitidis | 2.0 2.0 - Changed preferred name (was TURICELLA OTITIDIS) 1.0 - Added by PUTS project Turicibacter sanguinis 440839009 | Turicibacter sanguinis | 1.0 Unclassified virus 6596007 | Unclassified virus | 1.0 Unidentified AFB (?Nocardia-like) 243365003 | Acid-fast bacillus | 1.0 Unidentified Anaerobic Gram Negative Bacillus 243386003 | Anaerobic Gram-negative bacillus | 1.0 Unidentified Anaerobic Gram Pos Bac (?Clostridium) 243398008 | Anaerobic Gram-positive bacillus | 1.0 Unidentified dermatophyte 115651002 | Dermatophyte | 1.0 Unidentified Gram Negative Coccobacillus 53932007 | Gram-negative coccobacillus | 1.0 Ureaplasma parvum 438391000 | Ureaplasma parvum | 1.0 Ureaplasma sp. 29680004 | Ureaplasma species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131371004 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Ureaplasma urealyticum 12006007 | Ureaplasma urealyticum | 2.0 2.0 - Changed preferred name (was UREAPLASMA UREALYTICUM) 1.0 - Added by PUTS project Vaccinia 13126002 | Vaccinia virus | 1.0 Vagococcus sp. 116416009 | Vagococcus species | 3.0 3.0 - Changed SNOMED code from 116417000 as it is now inactive 1.0 - Added by PUTS project Vancomycin intermediate Staphylococcus aureus 406962002 | Vancomycin intermediate Staphylococcus aureus | 1.0 Vancomycin resistant Enterococcus 113727004 | Vancomycin resistant enterococcus | 1.0 Vancomycin resistant Staphylococcus aureus 404680007 | Vancomycin resistant Staphylococcus aureus | 1.0 Varibaculum cambriense 428140000 | Varibaculum cambriense | 1.0 Varicella Zoster virus 19551004 | Human herpesvirus 3 | 2.1 2.1 - Changed preferred name (was Varicella Zoster Virus) 1.0 - Added by PUTS project Variola 243568000 | Variola virus | 1.0 Variola Major virus 312410004 | Variola major virus | 2.1 2.1 - Changed preferred name (was Variola Major Virus) 1.0 - Added by PUTS project Variola Minor virus 312411000 | Variola minor virus | 2.1 2.1 - Changed preferred name (was Variola Minor Virus) 1.0 - Added by PUTS project Variovorax paradoxus 114050006 | Variovorax paradoxus | 1.0 Variovorax sp. 114049006 | Variovorax species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131388006 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Veillonella atypica 21633009 | Veillonella atypica | 1.0 Veillonella caviae 63486005 | Veillonella caviae | 1.0 Veillonella criceti 77243008 | Veillonella criceti | 1.0 Veillonella dispar 29564004 | Veillonella dispar | 1.0 Veillonella montpellierensis 438330001 | Veillonella montpellierensis | 1.0 Veillonella parvula 90435009 | Veillonella parvula | 2.0 2.0 - Changed preferred name (was VEILLONELLA PARVULA) 1.0 - Added by PUTS project Veillonella rodentium 78654008 | Veillonella rodentium | 1.0 Veillonella sp. 29875005 | Veillonella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 116420008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Venezuelan Equine Encephalomyelitis virus 62958000 | Venezuelan equine encephalomyelitis virus | 2.1 2.1 - Changed preferred name (was Venezuelan Equine Encephalomyelitis Virus) 1.0 - Added by PUTS project

RCPA Preferred Organism name Terminology binding (SNOMED CT-AU) Version History Vibrio cholerae O1 Hikojima bv classical 302577003 | Vibrio cholerae O1 classical Hikojima | 1.0 Vibrio cholerae O1 Hikojima bv El Tor 302574005 | Vibrio cholerae O1 El Tor Hikojima | 2.0 2.0 - Changed preferred name (was Vibrio cholerae O1 Hikojima bv Eltor) 1.0 - Added by PUTS project Vibrio cholerae O1 Inaba bv classical 302575006 | Vibrio cholerae O1 classical Inaba | 1.0 Vibrio cholerae O1 Inaba bv El Tor 302572009 | Vibrio cholerae O1 El Tor Inaba | 1.0 Vibrio cholerae O1 Ogawa bv classical 302576007 | Vibrio cholerae O1 classical Ogawa | 1.0 Vibrio cholerae O1 Ogawa bv El Tor 302573004 | Vibrio cholerae O1 El Tor Ogawa | 1.0 Vibrio cholerae O139 125048009 | Vibrio cholerae serogroup O139 | 1.0 Vibrio cincinnatiensis 36764009 | Vibrio cincinnatiensis | 1.0 Vibrio damsela 387799003 | Photobacterium damselae subsp damselae | 1.0 Vibrio fischeri 115050000 | Photobacterium fischeri | 1.0 Vibrio fluvialis 43199008 | Vibrio fluvialis | 1.0 Vibrio furnissii 6387008 | Vibrio furnissii | 1.0 Vibrio metschnikovii 28382009 | Vibrio metschnikovii | 1.0 Vibrio mimicus 11776003 | Vibrio mimicus | 1.0 Vibrio parahaemolyticus 11736008 | Vibrio parahaemolyticus | 1.0 Vibrio sp. 34872001 | Vibrio species | 3.0 3.0 - Changed SNOMED code from 131373001 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Vibrio vulnificus 55905000 | Vibrio vulnificus | 2.0 2.0 - Changed preferred name (was VIBRIO VULNIFICUS) 1.0 - Added by PUTS project Virus 49872002 | Virus | 1.0 Wangiella sp. 70200002 | Wangiella species | 1.0 Wautersia paucula 415834009 | Wautersia | 1.0 Weeksella sp. 28853003 | Weeksella species | 3.0 3.0 - Changed SNOMED code from 131374007 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Weeksella virosa 83326004 | Weeksella virosa | 1.0 Weissella confusa 113639001 | Weissella confusa | 1.0 Weissella sp. 118293006 | Weissella species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131252003 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project West Nile virus 57311007 | West Nile virus | 2.1 2.1 - Changed preferred name (was West Nile Virus) 1.0 - Added by PUTS project Wolinella sp. 84909009 | Wolinella species | 3.0 3.0 - Changed SNOMED code from 131375008 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Wuchereria bancrofti 84925004 | Wuchereria bancrofti | 1.0 Xanthomonadaceae 414228002 | Xanthomonadaceae | 1.0 Xanthomonas campestris 25105001 | Xanthomonas campestris | 1.0 Xanthomonas sp. 21544006 | Xanthomonas species | 3.0 3.0 - Changed preferred name, changing 'species' to sp. Changed SNOMED code from 131376009 which is now inactive due to SNOMED policy change 1.0 - Added by PUTS project Yarrowia lipolytica 63775007 | Candida lipolytica | 1.0 Yeast 62093005 | Yeast | 2.0 2.0 - Changed preferred name (was YEAST) 1.0 - Added by PUTS project Yellow fever virus 26630006 | Yellow fever virus | 3.0 3.0 - Changed preferred name from Yellow Fever virus to Yellow fever virus 2.1 - Changed preferred name (was Yellow Fever Virus) 1.0 - Added by PUTS project Yellow fever virus group 407538006 | Yellow Fever virus group | 3.0 3.0 - Changed preferred name from Yellow Fever virus to Yellow fever virus group 2.1 - Changed preferred name (was Yellow Fever Virus Group) 1.0 - Added by PUTS project