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Home , Actinomyces israelii, Anaplasma platys, Bartonella henselae, Brucella abortus, Burkholderia mallei, Coccidioides posadasii

Appendix A Complete list of 594 identified in canines categorized by the following taxonomical groups: , ectoparasites, fungi, helminths, protozoa, and viruses. Pathogens categorized as zoonotic/sapronotic/anthroponotic have been bolded; sapronoses are specifically denoted by a ❖. If the is involved in transmission, maintenance or detection of the it has been further underlined. Of these, if the pathogen is reported in in Canada (Tier 1) it has been denoted by an *. If the pathogen is reported in Canada but canine-specific reports are lacking (Tier 2) it is marked with a C (see also Appendix C). Finally, if the pathogen has the potential to occur in Canada (Tier 3) it is marked by a D (see also Appendix D).

Bacteria Brachyspira canis Enterococcus casseliflavus Acholeplasma laidlawii Brachyspira intermedia Enterococcus faecalis C Brachyspira pilosicoli C Enterococcus faecium* Brachyspira pulli Enterococcus gallinarum C actinomycetemcomitans C Brevibacterium spp. Enterococcus hirae D Actinobacillus lignieresii abortus Enterococcus malodoratus

Actinomyces bovis Brucella canis* Enterococcus spp.* bowdenii Brucella suis Erysipelothrix rhusiopathiae C Actinomyces canis mallei Erysipelothrix tonsillarum Actinomyces catuli Burkholderia pseudomallei❖ serovar 7 Actinomyces coleocanis Campylobacter coli* (EHEC, EPEC, Actinomyces hordeovulneris Campylobacter gracilis AIEC, UPEC, NTEC, Actinomyces hyovaginalis Campylobacter helveticus ETEC)* Actinomyces israelii * Eubacterium plautii D Actinomyces naeslundii Campylobacter lari Eubacterium spp. C Actinomyces neuii subsp. Campylobacter upsaliensis* Flavobacterium spp. D anitratus C Candidatus Mycoplasma Francisella philomiragia Actinomyces odontolyticus haematoparvum * Actinomyces turicensis Capnocytophaga canimorsus* Fusobacterium spp.* Actinomyces urogenitalis Capnocytophaga cynodegmi C Gemella morbillorum C * abortus aphrophilus C Actinomyces weissii Chlamydia caviae bilis Aliarcobacter butzleri C felis Helicobacter bizzozeronii D Aliarcobacter cryaerophilus C Chlamydophila psittaci D Anaerobiospirillum Chromobacterium spp.❖ succiniciproducens C Chromobacterium violaceum❖ Helicobacter cynogastricus D Anaerobiospirillum thomasii D Citrobacter diversus C Helicobacter fennelliae Archanobacterium pyogenes D anthracis C Citrobacter spp. Helicobacter heilmannii* Bacillus circulans C Clostridium botulinum type C Helicobacter rappini Bacillus subtilis D Clostridium botulinum type D Bacteroides spp.C Clostridium difficile* Klebsiella spp.* C clarridgeiae Clostridium perfringens* Lactobacillus spp. Clostridium piliforme Lawsonia intracellularis C * Clostridium spp. interrogans serovar C C Bartonella koehlerae Clostridium tetani australis D auriscanis Leptospira interrogans serovar C Corynebacterium canis autumnalis* C Bartonella vinsonii subsp. Corynebacterium freiburgense Leptospira interrogans serovar Corynebacterium spp. D bataviae D berkhoffii* C Bartonella washoensis Corynebacterium ulcerans Leptospira interrogans serovar Bergeyella zoohelcum C Corynebacterium urealyticum bratislava* Bordetella bronchiseptica* * Leptospira interrogans serovar C Cytobacillus firmus canicola* C afzelii senso lato Dermabacter hominis Leptospira interrogans serovar senso Dermatophilus congolensis grippotyphosa* stricto* C Leptospira interrogans serovar Borrelia garinii senso lato C hardjo* Borrelia turicatae Enterococcus avium C Leptospira interrogans serovar Brachyspira alvinipulli-like Enterococcus canintestini icterohaemorrhagiae*

Only a portion of the information obtained in this study is presented here. Please contact the authors for additional reference material on why a pathogen was or was not included in a particular step.

Leptospira interrogans serovar canis* Streptococcus suis pomona* * D Leptospira interrogans serovar Pasteurella spp.* Ureaplasma canigenitalum zanoni D Pediococcus spp. D Veillonella spp. C Leptotrichia buccalis C Peptostreptococcus spp. C pipientis D Listeria monocytogenes C * Mesomycoplasma molare Porphyromonas spp. D * Metamycoplasma gateae Prevotella spp. C Yersinia pseudotuberculosis C Metamycoplasma spumans Propionibacterium spp. C Methicillin resistant C CoNS strains (MRSS) C Ectoparasites Methicillin resistant Providencia alcalifaciens Cheyletiella parasitovorax D Staph aureus (MRSA)* Cheyletiella yasguri* Methicillin resistant aeruginosa* Ctenocephalides canis* Staph pseudintermedius Pseudomonas oryzihabitans D Ctenocephalides felis* C (MRSP)* Pseudomonas spp. Demodex canis Micrococcus lylae D Ralstonia pickettii❖ Echidnophaga gallinacea C Micrococcus spp. C Notoedres cati Moraxella spp.* Riemerella anatipestifer C Otodectes cynotis avium subsp (enteriditis, Pneumonyssoides caninum ❖ typhimurium)* Pulex irritans* Mycobacterium avium- Serratia spp. Pulex simulans intracellulare complex❖ Shigella spp. Sarcoptes scabiei var canis* Staphylococcus aureus* Tunga penetrans - Staphylococcus epidermidis C Xenopsylla cheopis C abscessus group C Staphylococcus group C pseudintermedius* Mycobacterium genavense❖ Staphylococcus schleiferi Fungi Mycobacterium goodii❖ coagulans Absidia spp.❖ Mycobacterium kansasii C Staphylococcus schleiferi Acremonium hyalinulum❖ Mycobacterium microti schleiferi Acremonium kiliense❖ Mycobacterium smegmatis Staphylococcus sciuri Alternaria spp.❖ group❖ Staphylococcus spp. D deflectus❖ Mycobacterium Canine Leproid Staphylococcus xylosus C Aspergillus flavipes❖ Granulomas Stenotrophomonas maltophilia C Aspergillus flavus❖ Mycobacterium Stomatococcus mucilaginosus C Aspergillus fumigatus❖ Mycoplasma arginini Streptobacillus moniliformis C Aspergillus nidulans❖ Mycoplasma bovigenitalium Streptococcus agalactiae Aspergillus niger❖ Mycoplasma canis Streptococcus canis (Group G)* Aspergillus terreus❖ Mycoplasma cynos Streptococcus dysgalactiae Basidiobolus spp.❖ Mycoplasma edwardii C dysgalactiae Bipolaris spp.❖ Mycoplasma feliminutum Streptococcus dysgalactiae Blastomyces dermatitidis* Mycoplasma felis equisimilis Mycoplasma haemocanis Streptococcus equi subsp. equi Candida famata Mycoplasma maculosum Streptococcus equi subsp. Mycoplasma opalescens zooepidemicus C Candida guilliermondii Mycoplasma ovis Streptococcus Group D Neisseria animaloris C commensals Candida parapsilosis Neisseria canis C Streptococcus Group E Candida rugosa Neisseria dentiae D Streptococcus Group L Neisseria spp. C Streptococcus Group M Chlorella spp.❖ Neisseria weaveri* Streptococcus intermedius spp.❖ Neisseria zoodegmatis C Streptococcus mitis (⍺- Cladophialophora bantiana❖ C streptococcus) C Cladophialophora spp.❖ C Streptococcus pneumoniae Cladosporium xylohypha❖ Nocardia nova C Streptococcus pyogenes (⍺- immitis Nocardia otitidiscaviarum C streptococcus) C Oerskovia spp. D Streptococcus spp.* Conidiobolus spp.❖

Only a portion of the information obtained in this study is presented here. Please contact the authors for additional reference material on why a pathogen was or was not included in a particular step.

Cryptococcus albidus❖ Alaria nasuae Cryptococcus gattii❖* Amphimerus pseudofelineus D Oslerus osleri Cryptococcus laurentii❖ Ancylostoma braziliense Paragonimus africanus ❖ Ancylostoma caninum Paragonimus heterotremus Curvularia spp.❖ Ancylostoma ceylanicum Paragonimus hueit'ungensis Emmonsia parva❖ Angiostrongylus vasorum Paragonimus kellicotti* Encephalitozoon cuniculi Apophallus donicus* Paragonimus mexicanus Encephalitozoon hellem Paragonimus spp. Encephalitozoon intestinalis procyonis* Phagicola longa C Epidermophyton spp. Brugia pahangi Phaneropsolus bonnei Fonsecaea spp.❖ Capillaria aerophila Physaloptera rara spp.❖ Centrocestus armatus Plagiorchis muris Geomyces spp.❖ Centrocestus formosanus Prohemistomum vivax Geosmithia argillacea❖ Prosthodendrium glandulosum ❖ Cryptocotyle lingua* Prosthodendrium obtusum capsulatum❖* Pseudamphistomum truncatum Lagenidium spp.❖ Dioctophyma renale Pygidiopsis summa Madurella spp.❖ Diphyllobothrium spp.* incognitum pachydermatis* Dipylidium caninum* Schistosoma japonicum * Dirofilaria immitis* Microsporum gypseum C D Schistosoma mekongi Monocillium indicum❖ Dracunculus insignis Schistosoma rodhaini Mucor spp.❖ Spirocerca lupi Ochronconis spp.❖ Echinochasmus fujianensis Spirometra mansoni Paecilomyces fumorsoroseus❖ Echinochasmus japonicus Stellantchasmus falcatus Paecilomyces lilacinus❖ C Echinochasmus liliputanus Stellantchasmus pseudocirratus Paecilomyces variotii❖ Echinochasmus perfoliatus Stictodora fuscata Paracoccidioides brasiliensis❖ * Strongyloides stercoralis C Penicillium spp.❖ Echinococcus multilocularis* Taenia brauni D Phialemonium spp.❖ Echinococcus vogeli D Taenia crassiceps C Phialophora spp.❖ Echinostoma cinetorchus Taenia hydatigena Pneumocystis carinii❖ Echinostoma hortense Taenia krabbei Pneumocystis wakefieldae❖ Echinostoma ilocanum Taenia multiceps C Prototheca spp.❖ Echinostoma spp. Taenia ovis ❖ Episthmium caninum Taenia pisiformis Pseudomicrodochium spp.❖ Filaroides hirthi Taenia serialis* insidiosum❖ Taenia solium ❖ Haplorchis pumilio Taenia spp.* Rhizomucor spp.❖ Haplorchis taichui Taenia taeniaeformis Rhizopus spp.❖ Haplorchis yokogawai californiensis D Rhodotorula glutinis❖ Heterobilharzia americana Thelazia callipaeda D Rhodotorula mucilaginosa❖ Heterophyes dispar Toxascaris leonina Saksenaea spp.❖ * Schizophyllum commune❖ Heterophyopsis continua * Macracanthorhynchus Trichuris vulpis Trichoderma spp.❖ hirudinaceus D Uncinaria stenocephala* spp.* Macracanthorhynchus ingens C cutaneum❖ Mesocestoides spp.* Protozoa Metorchis albidus Acanthamoeba castellanii❖ Helminths Metorchis conjunctus* Acanthamoeba culbertsoni❖ Acanthocheilonema * Acanthamoeba genotype T1❖ reconditum* Ollulanus tricuspis Babesia caballi Alaria alata* Onchocerca lupi Babesia canis canis Alaria americana* Oncicola canis Babesia canis rossi Alaria canis* Opisthorchis felineus Babesia canis vogeli Alaria marcianae* Opisthorchis noverca Babesia conradae

Only a portion of the information obtained in this study is presented here. Please contact the authors for additional reference material on why a pathogen was or was not included in a particular step.

Babesia gibsoni Rickettsia Canine respiratory coronavirus -like (Babesia phagocytophilum* group 2 (subtype a) annae) Canine rotavirus group A C D Balamuthia mandrillaris❖ canis* (G3P[3], G3P[8]) C Cowpox hominis Coxsackievirus A9, A20 Blastocystis spp. Ehrlichia ruminantium Coxsackievirus B1 Caryospora bigentica-like elokominica Coxsackievirus B3 Cryptosporidium canis* Neorickettsia helminthoeca Coxsackievirus B5 Eastern equine encephalitis Neorickettsia risticii subsp. Ebola virus atypicalis Echovirus 6 Entamoeba histolytica Echovirus 7 Giardia duodenalis Encephalomyocarditis virus (assemblage A1)* European virus Giardia duodenalis subsp. conorii Foot and Mouth Disease (assemblage B)* C Hendra virus Giardia duodenalis assemblage C E virus Giardia duodenalis assemblage D Influenza virus A (; Hammondia heydorni * subtypes H1N1, H3N2, Hepatozoon americanum Stellanchasmus falcatus H5N1) Hepatozoon canis Influenza virus B (Human) Intrahepatic biliary coccidiosis Influenza virus C (Human) Intrapulmonary coccidiosis Irkut virus Isospora burrowsi Viruses Japanese encephalitis virus Isospora canis African Sickness Kobuvirus Astrovirus Isospora neorivolta La Crosse virus Isospora ohioensis Australian bat virus Lagos bat virus Leishmania amazonensis Barmah Forest virus Louping ill Bluetongue virus Leishmania braziliensis Lymphocytic Choriomeningitis Leishmania donovani Borna Disease virus virus Leishmania infantum* Canine Acidophil Cell Hepatitis Mokola virus Canine Adenovirus 1 Leishmania major Mumps virus Leishmania panamensis Canine Adenovirus 2 Nipah virus Leishmania peruviana Canine Calicivirus ( 48) Poliovirus 1 Canine Coronavirus Leishmania tropica Porcine Herpesvirus 1 Neospora caninum group 1 type 1 Powassan virus Pentatrichomonas hominis Canine Coronavirus Rabies (genotype 1 phylogroup 1 group 1 type 2 (pantropic Sarcocystis aucheniae subtype 1)* Sarcocystis canis biotype) Reovirus MRV (Mammalian Sarcocystis capracanis Canine Coronavirus Reovirus) serotype 1 Sarcocystis cruzi group 1 type 2 (subtype a Reovirus MRV (Mammalian Sarcocystis fayeri and b) Reovirus) serotype 2 Sarcocystis hircicanis Canine Distemper virus Reovirus MRV (Mammalian Sarcocystis meischeriana Canine Herpesvirus 1 Reovirus) serotype 3 Sarcocystis neurona Canine Influenza virus (H3N8) Rift Valley Theileria annulata Canine Norovirus Ross River virus Theileria equi Canine Oral Papillomavirus Sapovirus Canine Papillomavirus type 2 Sars-CoV-2 (Covid-19) Tritrichomonas foetus Canine Papillomavirus type 3 Sin Nombre virus Trypanosoma brucei brucei Canine Papillomavirus type 6 St. Louis encephalitis Trypanosoma brucei gambiense Canine Papillomavirus type 7 Tenshaw (Tensaw) virus Trypanosoma brucei rhodesiense Canine Parainfluenza virus borne encephalitis Trypanosoma caninum (respiratory) Unclassified enteroviruses Trypanosoma congolense Canine Parainfluenza virus 5 Venezuelan equine encephalitis Trypanosoma cruzi* variant (non-respiratory) Vesicular exanthema Canine Parvovirus 1 Trypanosoma evansi West Nile virus Canine Parvovirus 2 Western equine encephalitis Canine Pneumovirus

Only a portion of the information obtained in this study is presented here. Please contact the authors for additional reference material on why a pathogen was or was not included in a particular step.