Flowering Plants Tend to Retain, and Revert To, Simple Leaves
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Full of Beans: a Study on the Alignment of Two Flowering Plants Classification Systems
Full of beans: a study on the alignment of two flowering plants classification systems Yi-Yun Cheng and Bertram Ludäscher School of Information Sciences, University of Illinois at Urbana-Champaign, USA {yiyunyc2,ludaesch}@illinois.edu Abstract. Advancements in technologies such as DNA analysis have given rise to new ways in organizing organisms in biodiversity classification systems. In this paper, we examine the feasibility of aligning two classification systems for flowering plants using a logic-based, Region Connection Calculus (RCC-5) ap- proach. The older “Cronquist system” (1981) classifies plants using their mor- phological features, while the more recent Angiosperm Phylogeny Group IV (APG IV) (2016) system classifies based on many new methods including ge- nome-level analysis. In our approach, we align pairwise concepts X and Y from two taxonomies using five basic set relations: congruence (X=Y), inclusion (X>Y), inverse inclusion (X<Y), overlap (X><Y), and disjointness (X!Y). With some of the RCC-5 relationships among the Fabaceae family (beans family) and the Sapindaceae family (maple family) uncertain, we anticipate that the merging of the two classification systems will lead to numerous merged solutions, so- called possible worlds. Our research demonstrates how logic-based alignment with ambiguities can lead to multiple merged solutions, which would not have been feasible when aligning taxonomies, classifications, or other knowledge or- ganization systems (KOS) manually. We believe that this work can introduce a novel approach for aligning KOS, where merged possible worlds can serve as a minimum viable product for engaging domain experts in the loop. Keywords: taxonomy alignment, KOS alignment, interoperability 1 Introduction With the advent of large-scale technologies and datasets, it has become increasingly difficult to organize information using a stable unitary classification scheme over time. -
Red Data List Special Edition
Newsletter of the Southern African Botanical Diversity Network Volume 6 No. 3 ISSN 1027-4286 November 2001 Invasive Alien Plants Part 2 Southern Mozambique Expedition Living Plant Collections: Lowveld, Mozambique, Namibia REDSABONET NewsDATA Vol. 6 No. 3 November LIST 2001 SPECIAL EDITION153 c o n t e n t s Red Data List Features Special 157 Profile: Ezekeil Kwembeya ON OUR COVER: 158 Profile: Anthony Mapaura Ferraria schaeferi, a vulnerable 162 Red Data Lists in Southern Namibian near-endemic. 159 Tribute to Paseka Mafa (Photo: G. Owen-Smith) Africa: Past, Present, and Future 190 Proceedings of the GTI Cover Stories 169 Plant Red Data Books and Africa Regional Workshop the National Botanical 195 Herbarium Managers’ 162 Red Data List Special Institute Course 192 Invasive Alien Plants in 170 Mozambique RDL 199 11th SSC Workshop Southern Africa 209 Further Notes on South 196 Announcing the Southern 173 Gauteng Red Data Plant Africa’s Brachystegia Mozambique Expedition Policy spiciformis 202 Living Plant Collections: 175 Swaziland Flora Protection 212 African Botanic Gardens Mozambique Bill Congress for 2002 204 Living Plant Collections: 176 Lesotho’s State of 214 Index Herbariorum Update Namibia Environment Report 206 Living Plant Collections: 178 Marine Fishes: Are IUCN Lowveld, South Africa Red List Criteria Adequate? Book Reviews 179 Evaluating Data Deficient Taxa Against IUCN 223 Flowering Plants of the Criterion B Kalahari Dunes 180 Charcoal Production in 224 Water Plants of Namibia Malawi 225 Trees and Shrubs of the 183 Threatened -
Phylogeny of Rosids! ! Rosids! !
Phylogeny of Rosids! Rosids! ! ! ! ! Eurosids I Eurosids II Vitaceae Saxifragales Eurosids I:! Eurosids II:! Zygophyllales! Brassicales! Celastrales! Malvales! Malpighiales! Sapindales! Oxalidales! Myrtales! Fabales! Geraniales! Rosales! Cucurbitales! Fagales! After Jansen et al., 2007, Proc. Natl. Acad. Sci. USA 104: 19369-19374! Phylogeny of Rosids! Rosids! ! ! ! ! Eurosids I Eurosids II Vitaceae Saxifragales Eurosids I:! Eurosids II:! Zygophyllales! Brassicales! Celastrales! Malvales! Malpighiales! Sapindales! Oxalidales! Myrtales! Fabales! Geraniales! Rosales! Cucurbitales! Fagales! After Jansen et al., 2007, Proc. Natl. Acad. Sci. USA 104: 19369-19374! Alnus - alders A. rubra A. rhombifolia A. incana ssp. tenuifolia Alnus - alders Nitrogen fixation - symbiotic with the nitrogen fixing bacteria Frankia Alnus rubra - red alder Alnus rhombifolia - white alder Alnus incana ssp. tenuifolia - thinleaf alder Corylus cornuta - beaked hazel Carpinus caroliniana - American hornbeam Ostrya virginiana - eastern hophornbeam Phylogeny of Rosids! Rosids! ! ! ! ! Eurosids I Eurosids II Vitaceae Saxifragales Eurosids I:! Eurosids II:! Zygophyllales! Brassicales! Celastrales! Malvales! Malpighiales! Sapindales! Oxalidales! Myrtales! Fabales! Geraniales! Rosales! Cucurbitales! Fagales! After Jansen et al., 2007, Proc. Natl. Acad. Sci. USA 104: 19369-19374! Fagaceae (Beech or Oak family) ! Fagaceae - 9 genera/900 species.! Trees or shrubs, mostly northern hemisphere, temperate region ! Leaves simple, alternate; often lobed, entire or serrate, deciduous -
First Steps Towards a Floral Structural Characterization of the Major Rosid Subclades
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2006 First steps towards a floral structural characterization of the major rosid subclades Endress, P K ; Matthews, M L Abstract: A survey of our own comparative studies on several larger clades of rosids and over 1400 original publications on rosid flowers shows that floral structural features support to various degrees the supraordinal relationships in rosids proposed by molecular phylogenetic studies. However, as many apparent relationships are not yet well resolved, the structural support also remains tentative. Some of the features that turned out to be of interest in the present study had not previously been considered in earlier supraordinal studies. The strongest floral structural support is for malvids (Brassicales, Malvales, Sapindales), which reflects the strong support of phylogenetic analyses. Somewhat less structurally supported are the COM (Celastrales, Oxalidales, Malpighiales) and the nitrogen-fixing (Cucurbitales, Fagales, Fabales, Rosales) clades of fabids, which are both also only weakly supported in phylogenetic analyses. The sister pairs, Cucurbitales plus Fagales, and Malvales plus Sapindales, are structurally only weakly supported, and for the entire fabids there is no clear support by the present floral structural data. However, an additional grouping, the COM clade plus malvids, shares some interesting features but does not appear as a clade in phylogenetic analyses. Thus it appears that the deepest split within eurosids- that between fabids and malvids - in molecular phylogenetic analyses (however weakly supported) is not matched by the present structural data. Features of ovules including thickness of integuments, thickness of nucellus, and degree of ovular curvature, appear to be especially interesting for higher level relationships and should be further explored. -
BM CC EB What Can We Learn from a Tree?
Introduction to Comparative Methods BM CC EB What can we learn from a tree? Net diversification (r) Relative extinction (ε) Peridiscaceae Peridiscaceae yllaceae yllaceae h h atop atop Proteaceae Proteaceae r r Ce Ce Tr oc T ho r M M o de c y y H H C C h r r e e a D D a o o nd o e e G G a a m m t t a a d r P r P h h e e u u c c p A p A r e a a e e a a a c a c n n a i B i B h h n d m d l m a l a m m e a e a e e t t n n c u u n n i i d i i e e e e o n o n p n p n a e a S e e S e e n n x x i i r c c a a n o n o p p h g e h g ae e l r a l r a a a a a a i i a a a e a e i b i b h y d c h d c i y i c a a c x c x c c G I a G I a n c n c c c y l y l t a a t a a e e e e e i l c i l c m l m l e c e c f a e a a f a e a a l r r l c c a i i r l e t e t a a r l a a e e u u u u o a o a a a c a c a a l a l e e e b b a a a a e e c e e c a a s c s c c e l c e l e e g e g e a a a a e e n n s e e s e e e e a a a P a P e e N N u u u S u S a e a e a a e e c c l n a l n e e a e e a e a e a e a e r a r a c c C i C i R R a e a e a e a e r c r c A A a d a a d a e i e i phanopetalaceae s r e ph s r e a a s e c s e c e e u u b a a b a e e P P r r l l e n e a a a a m m entho e e e Ha a H o a c r e c r e nt B B e p e e e c e e c a c c h e a p a a p a lo lo l l a a e s o t e s i a r a i a r r r r r a n e a n e a b a l b t a t gaceae e g e ceae a c a s c s a z e z M i a e M i a c a d e a d e ae e ae r e r a e a e a a a c c ce r e r L L i i ac a Vitaceae Vi r r C C e e ta v e v e a a c a a e ea p e ap c a c a e a P P e e l l e Ge G e e ae a t t e e p p r r ce c an u an -
Field Identification of the 50 Most Common Plant Families in Temperate Regions
Field identification of the 50 most common plant families in temperate regions (including agricultural, horticultural, and wild species) by Lena Struwe [email protected] © 2016, All rights reserved. Note: Listed characteristics are the most common characteristics; there might be exceptions in rare or tropical species. This compendium is available for free download without cost for non- commercial uses at http://www.rci.rutgers.edu/~struwe/. The author welcomes updates and corrections. 1 Overall phylogeny – living land plants Bryophytes Mosses, liverworts, hornworts Lycophytes Clubmosses, etc. Ferns and Fern Allies Ferns, horsetails, moonworts, etc. Gymnosperms Conifers, pines, cycads and cedars, etc. Magnoliids Monocots Fabids Ranunculales Rosids Malvids Caryophyllales Ericales Lamiids The treatment for flowering plants follows the APG IV (2016) Campanulids classification. Not all branches are shown. © Lena Struwe 2016, All rights reserved. 2 Included families (alphabetical list): Amaranthaceae Geraniaceae Amaryllidaceae Iridaceae Anacardiaceae Juglandaceae Apiaceae Juncaceae Apocynaceae Lamiaceae Araceae Lauraceae Araliaceae Liliaceae Asphodelaceae Magnoliaceae Asteraceae Malvaceae Betulaceae Moraceae Boraginaceae Myrtaceae Brassicaceae Oleaceae Bromeliaceae Orchidaceae Cactaceae Orobanchaceae Campanulaceae Pinaceae Caprifoliaceae Plantaginaceae Caryophyllaceae Poaceae Convolvulaceae Polygonaceae Cucurbitaceae Ranunculaceae Cupressaceae Rosaceae Cyperaceae Rubiaceae Equisetaceae Rutaceae Ericaceae Salicaceae Euphorbiaceae Scrophulariaceae -
Plant Diseases Regulations 1989
Western Australia Plant Diseases Regulations 1989 STATUS OF THIS DOCUMENT This document is from an electronic database of legislation maintained by the Parliamentary Counsel’s Office of Western Australia. DISCLAIMER No warranty is given as to the accuracy or completeness of this document. The State of Western Australia and its agents and employees disclaim liability, whether in negligence or otherwise, for any loss or damage resulting from reliance on the accuracy or completeness of this document. REPRINT AND CONSOLIDATION NUMBERING The reprint number (in the footer of each page of the document) shows how many times the Act has been reprinted. For example, numbering a reprint as “Reprint 3” would mean that the reprint was the 3rd reprint since the Act was passed. A consolidation described as “Consolidation 3a” would be the result of updating Reprint 3 for the first time to reflect the amendments since the date as at which Reprint 3 was prepared. Reprint and consolidation numbering was implemented as from 1 January 2003. COPYRIGHT Copyright in this document is reserved to the Crown in right of the State of Western Australia. Reproduction except in accordance with copyright law is prohibited. THE TEXT OF THE LEGISLATION FOLLOWS Western Australia Plant Diseases Regulations 1989 CONTENTS Part 1 — Preliminary 1. Citation 1 2. Commencement 1 3. Interpretation 1 Part 2 — Entry requirements 3A. Quality assurance system 3 3B. Bringing plants into the State 3 4. Potential carriers — conditions for entry 3 4A. Potential carriers — entry for experimental purposes 4 4B. Potential carriers — entry for processing or export 4 5. Entry of propagating material 5 6. -
Wasps and Bees in Southern Africa
SANBI Biodiversity Series 24 Wasps and bees in southern Africa by Sarah K. Gess and Friedrich W. Gess Department of Entomology, Albany Museum and Rhodes University, Grahamstown Pretoria 2014 SANBI Biodiversity Series The South African National Biodiversity Institute (SANBI) was established on 1 Sep- tember 2004 through the signing into force of the National Environmental Manage- ment: Biodiversity Act (NEMBA) No. 10 of 2004 by President Thabo Mbeki. The Act expands the mandate of the former National Botanical Institute to include respon- sibilities relating to the full diversity of South Africa’s fauna and flora, and builds on the internationally respected programmes in conservation, research, education and visitor services developed by the National Botanical Institute and its predecessors over the past century. The vision of SANBI: Biodiversity richness for all South Africans. SANBI’s mission is to champion the exploration, conservation, sustainable use, appreciation and enjoyment of South Africa’s exceptionally rich biodiversity for all people. SANBI Biodiversity Series publishes occasional reports on projects, technologies, workshops, symposia and other activities initiated by, or executed in partnership with SANBI. Technical editing: Alicia Grobler Design & layout: Sandra Turck Cover design: Sandra Turck How to cite this publication: GESS, S.K. & GESS, F.W. 2014. Wasps and bees in southern Africa. SANBI Biodi- versity Series 24. South African National Biodiversity Institute, Pretoria. ISBN: 978-1-919976-73-0 Manuscript submitted 2011 Copyright © 2014 by South African National Biodiversity Institute (SANBI) All rights reserved. No part of this book may be reproduced in any form without written per- mission of the copyright owners. The views and opinions expressed do not necessarily reflect those of SANBI. -
Handbook-Victoria.Pdf
VICTORIA, by theGrace of God, of the United Kingdona of Great Britain and IreZandQueen, Defender of the Paith. Our trusty and well-beloved the Honorable GEORGE DAVIDLANGRIDGE, a Member of the Executive Council of Our Colony of Victoria, and a - Member of the Legislative Assembly of Our said Colony; HENRYGYLES TURNER,Esquire, J.P., Acting President of the Chamber of Commerce ; ISAACJACOBS, Esquire, President of the Victorian Chamber of Manufactures ; JOHN GEORGEBARRETT, Esquire, President of the Melbourne Trades’ Hall Council ; JAMES COOPERSTEWART, Esquire, an Alderman of the City of Melbourne; and HENRYMEAKIN, Esquire, a Councillor of the Town of Geelong, 5 GREETING- WHEREASit has been notified to us that an Exhibition of the Arts, Industries, Resources, and Manners of New Zealand, Australia, and the other Countries and Colonies in the Southern Pacific will open at Dunedin,in Our Colony of New Zealand, in themonth of November next, in celebration of the Fiftieth Anniversary of the Foundation of Our said Colony of New Zealand, ?nd*whereas it is in every respect desirable that Our Colony of Victoria sh9u.l’d,be duly represented at the same and that a Commission should be appointed to devise and carry out such measures as may be necessary to secure the effectual exhibition thereat òf fitting specimens of the Arts, Industries, and Resources of Our said Colony of Victoria: Now KNOW YE that We, reposing great trust and confidence in your knowledge and ability, have constituted and appointed, and by these presents do constitute and appoint you -
Botany-Illustrated-J.-Glimn-Lacy-P.-Kaufman-Springer-2006.Pdf
Janice Glimn-Lacy Peter B. Kaufman 6810 Shadow Brook Court Department of Molecular, Cellular, and Indianapolis, IN 46214-1901 Developmental Biology USA University of Michigan [email protected] Ann Arbor, MI 48109-1048 USA [email protected] Library of Congress Control Number: 2005935289 ISBN-10: 0-387-28870-8 eISBN: 0-387-28875-9 ISBN-13: 978-0387-28870-3 Printed on acid-free paper. C 2006 Janice Glimn-Lacy and Peter B. Kaufman All rights reserved. This work may not be translated or copied in whole or in part without the written permission of the publisher (Springer Science+Business Media, Inc., 233 Spring Street, New York, NY 10013, USA), except for brief excerpts in connection with reviews or scholarly analysis. Use in connection with any form of information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed is forbidden. The use in this publication of trade names, trademarks, service marks, and similar terms, even if they are not identified as such, is not to be taken as an expression of opinion as to whether or not they are subject to proprietary rights. Printed in the United States of America. (TB/MVY) 987654321 springer.com Preface This is a discovery book about plants. It is for everyone For those interested in the methods used and the interested in plants including high school and college/ sources of plant materials in the illustrations, an expla- university students, artists and scientific illustrators, nation follows. For a developmental series of drawings, senior citizens, wildlife biologists, ecologists, profes- there are several methods. -
An All-Taxa Biodiversity Inventory of the Huron Mountain Club
AN ALL-TAXA BIODIVERSITY INVENTORY OF THE HURON MOUNTAIN CLUB Version: August 2016 Cite as: Woods, K.D. (Compiler). 2016. An all-taxa biodiversity inventory of the Huron Mountain Club. Version August 2016. Occasional papers of the Huron Mountain Wildlife Foundation, No. 5. [http://www.hmwf.org/species_list.php] Introduction and general compilation by: Kerry D. Woods Natural Sciences Bennington College Bennington VT 05201 Kingdom Fungi compiled by: Dana L. Richter School of Forest Resources and Environmental Science Michigan Technological University Houghton, MI 49931 DEDICATION This project is dedicated to Dr. William R. Manierre, who is responsible, directly and indirectly, for documenting a large proportion of the taxa listed here. Table of Contents INTRODUCTION 5 SOURCES 7 DOMAIN BACTERIA 11 KINGDOM MONERA 11 DOMAIN EUCARYA 13 KINGDOM EUGLENOZOA 13 KINGDOM RHODOPHYTA 13 KINGDOM DINOFLAGELLATA 14 KINGDOM XANTHOPHYTA 15 KINGDOM CHRYSOPHYTA 15 KINGDOM CHROMISTA 16 KINGDOM VIRIDAEPLANTAE 17 Phylum CHLOROPHYTA 18 Phylum BRYOPHYTA 20 Phylum MARCHANTIOPHYTA 27 Phylum ANTHOCEROTOPHYTA 29 Phylum LYCOPODIOPHYTA 30 Phylum EQUISETOPHYTA 31 Phylum POLYPODIOPHYTA 31 Phylum PINOPHYTA 32 Phylum MAGNOLIOPHYTA 32 Class Magnoliopsida 32 Class Liliopsida 44 KINGDOM FUNGI 50 Phylum DEUTEROMYCOTA 50 Phylum CHYTRIDIOMYCOTA 51 Phylum ZYGOMYCOTA 52 Phylum ASCOMYCOTA 52 Phylum BASIDIOMYCOTA 53 LICHENS 68 KINGDOM ANIMALIA 75 Phylum ANNELIDA 76 Phylum MOLLUSCA 77 Phylum ARTHROPODA 79 Class Insecta 80 Order Ephemeroptera 81 Order Odonata 83 Order Orthoptera 85 Order Coleoptera 88 Order Hymenoptera 96 Class Arachnida 110 Phylum CHORDATA 111 Class Actinopterygii 112 Class Amphibia 114 Class Reptilia 115 Class Aves 115 Class Mammalia 121 INTRODUCTION No complete species inventory exists for any area. -
Coastal Vegetation of South Africa 14
658 S % 19 (2006) Coastal Vegetation of South Africa 14 Ladislav Mucina, Janine B. Adams, Irma C. Knevel, Michael C. Rutherford, Leslie W. Powrie, John J. Bolton, Johannes H. van der Merwe, Robert J. Anderson, Thomas G. Bornman, Annelise le Roux and John A.M. Janssen Table of Contents 1 Introduction: Distribution and Azonal Character of Coastal Vegetation 660 2 Origins of South African Coastal Features 661 3 Ecology of Coastal Habitats 662 3.1 Aquatic and Semi-aquatic Habitats 662 3.1.1 Algal Beds 662 3.1.2 Estuaries 662 3.2 Terrestrial Habitats 666 3.2.1 Sandy Beaches and Dunes 666 3.2.2 Rocky Shores: Coastal Cliffs and Headlands 671 4 Biogeographical Patterns 672 4.1 Major Biogeographical Divisions 672 4.2 Algal Beds 673 4.3 Estuaries 674 4.4 Dunes 675 5 Principles of Delimitation of Vegetation Units 675 5.1 Algal Beds 675 5.2 Estuarine Vegetation 675 5.3 Dry Seashore Vegetation 676 5.4 Eastern Strandveld 676 6 Conservation Challenges: Status, Threats and Actions 677 6.1 Algal Beds 677 6.2 Estuaries 677 6.3 Beaches, Dunes and Strandveld 678 7 Future Research 679 8 Descriptions of Vegetation Units 680 9 Credits 690 10 References 690 Figure 14.1 Evening mood with Scaevola plumieri (Goodeniaceae) on the coastal dunes of Maputaland (northern KwaZulu-Natal). 659 W.S. Matthews W.S. S % 19 (2006) List of Vegetation Units cate interactions between sea and air temperature, geology and local topography, wind patterns and deposition of sand Algal Beds 680 and salt, and of tidal regime.