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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Canestro 07Devbio Oikopleura Retinoic Acid Chordate.Pdf
Developmental Biology 305 (2007) 522–538 www.elsevier.com/locate/ydbio Development of a chordate anterior–posterior axis without classical retinoic acid signaling ⁎ Cristian Cañestro, John H. Postlethwait Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA Received for publication 28 November 2006; revised 18 February 2007; accepted 26 February 2007 Available online 2 March 2007 Abstract Developmental signaling by retinoic acid (RA) is thought to be an innovation essential for the origin of the chordate body plan. The larvacean urochordate Oikopleura dioica maintains a chordate body plan throughout life, and yet its genome appears to lack genes for RA synthesis, degradation, and reception. This suggests the hypothesis that the RA-machinery was lost during larvacean evolution, and predicts that Oikopleura development has become independent of RA-signaling. This prediction raises the problem that the anterior–posterior organization of a chordate body plan can be developed without the classical morphogenetic role of RA. To address this problem, we performed pharmacological treatments and analyses of developmental molecular markers to investigate whether RA acts in anterior–posterior axial patterning in Oikopleura embryos. Results revealed that RA does not cause homeotic posteriorization in Oikopleura as it does in vertebrates and cephalochordates, and showed that a chordate can develop the phylotypic body plan in the absence of the classical morphogenetic role of RA. A comparison of Oikopleura and ascidian evidence suggests that the lack of RA-induced homeotic posteriorization is a shared derived feature of urochordates. We discuss possible relationships of altered roles of RA in urochordate development to genomic events, such as rupture of the Hox-cluster, in the context of a new understanding of chordate phylogeny. -
Study of Dental Fluorosis in Subjects Related to a Phosphatic Fertilizer
Indian Journal of Geo Marine Sciences Vol. 46 (07), July 2017, pp. 1371-1380 Diversity and abundance of epipelagic larvaceans and calanoid copepods in the eastern equatorial Indian Ocean during the spring inter-monsoon Kaizhi Li, Jianqiang Yin*, Yehui Tan, Liangmin Huang & Gang Li Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China *[E-mail: [email protected]] Received 20 August 2015; revised 29 September 2015 This study investigated the species composition, distribution and abundance of larvaceans and calanoid copepods in the eastern equatorial Indian Ocean. In total, 25 species of larvaceans and 69 species of calanoid copepods were identified in the study area. Although the average diversity and evenness indexes of larvaceans were lower than those of calanoid copepods, the abundance of larvaceans was higher than that of calanoids with means of 40.1±14.9 ind m-3 and 28.4±9.1 ind m-3, respectively. Larvacean community was numerically dominated by Oikopleura fusiformis, Oikopleura longicauda, Oikopleura cophocerca, Fritillaria formica and Fritillaria pellucida, accounting for 83% of total larvacean abundance. The calanoid community was dominated by the following five species, represented 61% of calanoid copepods: Clausocalanus furcatus, Clausocalanus farrani, Acartia negligens, Acrocalanus longicornis as well as the copepodite stage of Euchaeta spp. This study highlights that the importance of larvaceans in the eastern equatorial Indian Ocean. [Keywords: Appendicularians, Calanoids, Water mass, Monsoon, Indian Ocean] Introduction It has been clear that small organisms of marine Clausocalanus) and the cyclopoid genera (such as zooplankton have historically been under-sampled by Oithona, Oncaea and Corycaeus1). -
Brains of Primitive Chordates 439
Brains of Primitive Chordates 439 Brains of Primitive Chordates J C Glover, University of Oslo, Oslo, Norway although providing a more direct link to the evolu- B Fritzsch, Creighton University, Omaha, NE, USA tionary clock, is nevertheless hampered by differing ã 2009 Elsevier Ltd. All rights reserved. rates of evolution, both among species and among genes, and a still largely deficient fossil record. Until recently, it was widely accepted, both on morpholog- ical and molecular grounds, that cephalochordates Introduction and craniates were sister taxons, with urochordates Craniates (which include the sister taxa vertebrata being more distant craniate relatives and with hemi- and hyperotreti, or hagfishes) represent the most chordates being more closely related to echinoderms complex organisms in the chordate phylum, particu- (Figure 1(a)). The molecular data only weakly sup- larly with respect to the organization and function of ported a coherent chordate taxon, however, indicat- the central nervous system. How brain complexity ing that apparent morphological similarities among has arisen during evolution is one of the most chordates are imposed on deep divisions among the fascinating questions facing modern science, and it extant deuterostome taxa. Recent analysis of a sub- speaks directly to the more philosophical question stantially larger number of genes has reversed the of what makes us human. Considerable interest has positions of cephalochordates and urochordates, pro- therefore been directed toward understanding the moting the latter to the most closely related craniate genetic and developmental underpinnings of nervous relatives (Figure 1(b)). system organization in our more ‘primitive’ chordate relatives, in the search for the origins of the vertebrate Comparative Appearance of Brains, brain in a common chordate ancestor. -
Science Journals
SCIENCE ADVANCES | RESEARCH ARTICLE MARINE ECOLOGY Copyright © 2017 The Authors, some From the surface to the seafloor: How giant larvaceans rights reserved; exclusive licensee transport microplastics into the deep sea American Association for the Advancement † † of Science. No claim to Kakani Katija,* C. Anela Choy,* Rob E. Sherlock, Alana D. Sherman, Bruce H. Robison original U.S. Government Works. Distributed Plastic waste is a pervasive feature of marine environments, yet little is empirically known about the biological under a Creative and physical processes that transport plastics through marine ecosystems. To address this need, we conducted Commons Attribution in situ feeding studies of microplastic particles (10 to 600 mm in diameter) with the giant larvacean Bathochordaeus NonCommercial stygius. Larvaceans are abundant components of global zooplankton assemblages, regularly build mucus “houses” License 4.0 (CC BY-NC). to filter particulate matter from the surrounding water, and later abandon these structures when clogged. By conducting in situ feeding experiments with remotely operated vehicles, we show that giant larvaceans are able to filter a range of microplastic particles from the water column, ingest, and then package microplastics into their fecal pellets. Microplastics also readily affix to their houses, which have been shown to sink quickly to the seafloor and deliver pulses of carbon to benthic ecosystems. Thus, giant larvaceans can contribute to the vertical flux of microplastics through the rapid sinking of fecal pellets and discarded houses. Larvaceans, and potentially other abundant pelagic filter feeders, may thus comprise a novel biological transport mechanism delivering microplastics from surface waters, through the water column, and to the seafloor. -
Eurochordata and Cephalochordata of Persian Gulf & Oman See
Subphylum Urochordata : Tunicates Class Ascidacea Class Larvacea Class Thaliacea Subphylum Cephalochordata : Amphioxus Phylum Chordata : 1 - Subphylum Urochordata 2 Subphylum Cephalochordata (Subphylum Urochordata : Tunicates ) Class Ascidiacea Class Larvacea Class Thaliacea (Subphylum Cephalochordata ) Class Ascidiacea Ascidia Kowalevsky Patricia Kott D. lane David George & Gordon Paterson Herdmania momus savigny Herdmania momus kiamanensis Didemnum candidum savigny Phallusia nigra savigny Styela canopus savigny Class Ascidiacea : Order : Aplousobranchia Family : Polyclinidae : Aplidium cf. rubripunctum C.Monniot & F. Monniot 1997 Polyclinum constellatum Savigny, 1816 Family Didemnidae Didemnum candidum Savigny, 1816 Didemnum cf. granulatum Tokioka, 1954 Didemnum obscurum F. Monniot 1969 Didemnum perlucidum F. Monniot, 1983 Didemnum sp. Didemnum yolky C.Monniot & F. Monniot 1997 Diplosoma listerianum Milne Edwards, 1841 Order : Phlebobranchia Family : Ascidiidae Ascidia sp. Phallusia julinea Sluiter, 1915 Phallusia nigra Savigny, 1816 Order : Stolidobranchia Family : Styelidae Botryllus gregalis Sluiter, 1898 Botryllus niger Herdman, 1886 Botryllus sp. Eusynstyela cf. hartmeyeri Michaelsen, 1904 Polyandrocarpa sp. Styela canopus Savigny, 1816 Symplegma bahraini C.Monniot & F. Monniot 1997 Symplegma brakenhielmi Michaelsen, 1904 Family pyuridae Herdmania momus Savigny, 1816 Pyura curvigona Tokioka, 1950 Pyurid sp. Class Larvacea Larva Seymour Sewell Phylum Chordata Subphylum Urochordata * Class Larvacea Order Copelata Family Fritillariidae -
The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom
lopmen ve ta e l B Williamson, Cell Dev Biol 2012, 1:1 D io & l l o l g DOI: 10.4172/2168-9296.1000101 e y C Cell & Developmental Biology ISSN: 2168-9296 Research Article Open Access The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom Abstract The larval transfer hypothesis states that larvae originated as adults in other taxa and their genomes were transferred by hybridization. It contests the view that larvae and corresponding adults evolved from common ancestors. The present paper reviews the life histories of chordates, and it interprets them in terms of the larval transfer hypothesis. It is the first paper to apply the hypothesis to craniates. I claim that the larvae of tunicates were acquired from adult larvaceans, the larvae of lampreys from adult cephalochordates, the larvae of lungfishes from adult craniate tadpoles, and the larvae of ray-finned fishes from other ray-finned fishes in different families. The occurrence of larvae in some fishes and their absence in others is correlated with reproductive behavior. Adult amphibians evolved from adult fishes, but larval amphibians did not evolve from either adult or larval fishes. I submit that [1] early amphibians had no larvae and that several families of urodeles and one subfamily of anurans have retained direct development, [2] the tadpole larvae of anurans and urodeles were acquired separately from different Mesozoic adult tadpoles, and [3] the post-tadpole larvae of salamanders were acquired from adults of other urodeles. Reptiles, birds and mammals probably evolved from amphibians that never acquired larvae. -
Developmental Biology 448 (2019) 247–259
Developmental Biology 448 (2019) 247–259 Contents lists available at ScienceDirect Developmental Biology journal homepage: www.elsevier.com/locate/developmentalbiology Spermatogenesis as a tool for staging gonad development in the gonochoric MARK appendicularian Oikopleura dioica Fol 1872 Francesca Cima Laboratory of Ascidian Biology, Department of Biology, University of Padova, Via Ugo Bassi 58/B, 35121 Padova, Italy ARTICLE INFO ABSTRACT Keywords: Oikopleura dioica, the only gonochoric species among appendicularians, has a spematozoon with a mid-piece Appendicularia and a conspicuous acrosome that, during fertilisation, undergoes a reaction forming an acrosomal process. To Gametogenesis provide more insight into the spermatogenesis of a holoplanktonic tunicate species that completes its life cycle Male gonad in three to five days, changes in the testis during individual growth have been examined. Spermatogenesis has Oikopleura dioica been subdivided into seven stages based on ultrastructural features during the formation and organisation of the Spermatogenesis male gonad and the relationships between its macroscopic anatomy and the events of sperm differentiation. Ultrastructure Gametes undergo highly synchronised differentiation due to the presence of widespread syncytial structures. Both meiosis and spermiogenesis are brief, and the passage from spermatocytes to spermatids involves a progressive segregation of the germ cells from the syncytial mass with the formation of large cytoplasmic bridges and volume reduction for nucleus compacting and cytoplasmic material changing. The nucleus is small and penetrated anteriorly by a complex acrosome and posteriorly by the distal centriole and part of the flagellum. In spermatids, the single, large mitochondrion appears laterally to the nucleus, and finally, in spermatozoa, it migrates into the mid-piece, wrapping the proximal portion of the axoneme. -
Effect of Appendicularians and Copepods on Bacterioplankton Composition and Growth in the English Channel
AQUATIC MICROBIAL ECOLOGY Vol. 32: 39–46, 2003 Published May 12 Aquat Microb Ecol Effect of appendicularians and copepods on bacterioplankton composition and growth in the English Channel Mikhail V. Zubkov1,*, Angel López-Urrutia2 1George Deacon Division for Ocean Processes, Southampton Oceanography Centre, University of Southampton, Empress Dock, Southampton SO14 3ZH, United Kingdom 2Plymouth Marine Laboratory, Prospect Place, Plymouth PL1 3DH, United Kingdom ABSTRACT: We compared the effects of the presence of the appendicularian Oikopleura dioica and the copepods Acartia clausii and Calanus helgolandicus on the coastal bacterioplankton community off Plymouth. Mesozooplankton were added to water samples and bacterioplankton growth was monitored by flow cytometry. Phylogenetic composition of bacterioplankton was analysed using flu- orescence in situ hybridisation (FISH) with rRNA-targeted oligonucleotide probes. The bacterio- plankton composition did not change in the presence of either appendicularians or copepods, and generally the same proportions of bacterioplankton groups were determined. In late spring, 15 ± 2% of cells hybridised with a probe specific to the Kingdom Archaea. The majority of cells (88 ± 2%) belonged to the Kingdom Bacteria, and 86% of cells were identified using group-specific probes. The Cytophage-Flavobacterium cluster dominated the community, comprising 64 ± 0.5% of cells. The γ- proteobacteria were the second abundant group, comprising 11 ± 0.5% of cells, and the SAR86 clus- ter of γ-proteobacteria accounted for 6 ± 5%. The α-proteobacteria comprised 10 ± 5% of bacterio- plankton, and the Roseobacteria related cluster represented 9 ± 3% of cells. The reduction of bacterioplankton growth caused by appendicularian bacterivory was 0.4 to 14% ind.–1 l–1, and the total appendicularian population could reduce bacterial growth in coastal waters in late spring- summer by up to 9%. -
Redalyc.Checklist Da Classe Appendicularia (Chordata: Tunicata)
Biota Neotropica ISSN: 1676-0611 [email protected] Instituto Virtual da Biodiversidade Brasil Vega-Pérez, Luz Amelia; Gurgel de Campos, Meiri Aparecida; Schinke, Katya Patrícia Checklist da Classe Appendicularia (Chordata: Tunicata) do Estado de São Paulo, Brasil Biota Neotropica, vol. 11, núm. 1a, 2011, pp. 1-9 Instituto Virtual da Biodiversidade Campinas, Brasil Disponível em: http://www.redalyc.org/articulo.oa?id=199120113029 Como citar este artigo Número completo Sistema de Informação Científica Mais artigos Rede de Revistas Científicas da América Latina, Caribe , Espanha e Portugal Home da revista no Redalyc Projeto acadêmico sem fins lucrativos desenvolvido no âmbito da iniciativa Acesso Aberto Checklist da classe appendicularia (Chordata: Tunicata) do Estado de São Paulo, Brasil Vega-Pérez, L.M. et al. Biota Neotrop. 2011, 11(1a): 000-000. On line version of this paper is available from: http://www.biotaneotropica.org.br/v11n1a/en/abstract?inventory+bn0401101a2011 A versão on-line completa deste artigo está disponível em: http://www.biotaneotropica.org.br/v11n1a/pt/abstract?inventory+bn0401101a2011 Received/ Recebido em 23/07/2010 - Revised/ Versão reformulada recebida em 08/10/2010 - Accepted/ Publicado em 15/12/2010 ISSN 1676-0603 (on-line) Biota Neotropica is an electronic, peer-reviewed journal edited by the Program BIOTA/FAPESP: The Virtual Institute of Biodiversity. This journal’s aim is to disseminate the results of original research work, associated or not to the program, concerned with characterization, conservation and sustainable use of biodiversity within the Neotropical region. Biota Neotropica é uma revista do Programa BIOTA/FAPESP - O Instituto Virtual da Biodiversidade, que publica resultados de pesquisa original, vinculada ou não ao programa, que abordem a temática caracterização, conservação e uso sustentável da biodiversidade na região Neotropical. -
Title GENERAL CONSIDERATION on JAPANESE APPENDICULARIAN
GENERAL CONSIDERATION ON JAPANESE Title APPENDICULARIAN FAUNA Author(s) Tokioka, Takasi PUBLICATIONS OF THE SETO MARINE BIOLOGICAL Citation LABORATORY (1955), 4(2-3): 251-261 Issue Date 1955-05-30 URL http://hdl.handle.net/2433/174523 Right Type Departmental Bulletin Paper Textversion publisher Kyoto University GENERAL CONSIDERATION ON JAPANESE APPENDICULARIAN FAUNA') T AKASI TOKIOKA Seto Marine Biological Laboratory, Sirahama With 6 Text-figures I. Species Occlilrring ilil Japanese Waters and the Neighbolilring Seas. So far as I am aware, the following 34 species of appendicularians are found in reports dealing with this animal group occurring in Japanese waters and the neigh bouring seas. Oikopleuridae Oikopleura (Coecaria) longicauda VoGT (A, T,, T 2 , T 3 ) Oikopleura (Coecaria) fusiformis FoL (A, T,, T 2 , Ts) Oikopleura (Coecaria) intermedia LOHMANN ( =Oik. microstoma AIDA) (A, T,, T 2 ) *Oikopleura (Coecaria) cornutogastra AIDA (A, T 2 , T 3) Oikopleura (Coecaria) graciloides LOHMANN & BuCKMANN (T2 ) Oikopleura (Coecaria) gracilis LOHMANN (T3 ) Oikopleura ( Vexillaria) dioica FoL (A, T,, T 2 , T 3 ) Oikopleura (Vexillaria) rufescens FoL (A, T,, T 2 , T 3) Oikopleura ( Vexillaria) parva LoHMANN (T3 ) Oikopleura (Vexillaria) cophocerca GEGENBAUR (T1 , T 2 , T 3) Oikopleura ( Vexillaria) albicans (LEUCKART) (T,) Oikopleura ( Vexillaria) labradoriensis LoHMANN (T,, T 3 ) *Oikopleura ( Vexillaria) chamissonis MERTENS (MERTENS 1831) Megalocercus huxleyi (RITTER) (=Oik. megastoma AIDA) (A, T,, T 2 , T 3 ) Stegosoma magnum (LANGERHANS) (A, T 1 , T 2 , T 3 ) *Chunopleura microgaster LOHMANN (T,) Pelagopleura verticalis (LoHMANN) (T2 ) *Pelagopleura sp. (T,, T 3 ) Fritillaridae Fritillaria (Acrocercus) haplostoma FoL (A, T,, T 2 , Ts) ----------------------------------·------- 1) Contributions from the Seto Marine Biological Laboratory, No. -
Tropical Marine Invertebrates CAS BI 569 Phylum Chordata by J
Tropical Marine Invertebrates CAS BI 569 Phylum Chordata by J. R. Finnerty Porifera Ctenophora Cnidaria Deuterostomia Ecdysozoa Lophotrochozoa Chordata Arthropoda Annelida Hemichordata Onychophora Mollusca Echinodermata *Nematoda *Platyhelminthes Acoelomorpha Calcispongia Silicispongiae PROTOSTOMIA Phylum Chordata subPhylum VERTEBRATA subPhylum UROCHORDATA class Ascidaceae—the “sea squirts” class Larvaceae—the larvaceans class Thaliaceae—the salps subPhylum CEPHALOCHORDATA—the “lancelets” Subphylum Subphylum Subphylum Phylum Phylum Vertebrata Urochordata Cephalochordata ECHINODERMATA HEMICHORDATA Phylum CHORDATA Notochord Blastopore -> anus Dorsal hollow nerve cord Radial / equal cleavage Pharyngeal gill slits Coelom forms by enterocoely Endostyle Cross-section through a Chick embryo During Neurulation Subphylum Vertebrata Ordovician Origins—Jawless fishes vertebral column paired appendages post-anal tail Jawed fishes, gnathostomes late Ordovician, early Silurian jaws early Devonian / late Devonian tetrapods / amniotes Permian (299-251) Carboniferous subphylum VERTEBRATA (359-299) gnathostomes (with jaws) 1. Vertebral column Devonian 2. Paired appendages (416-359) 3. Jaws 4. Post anal tail Silurian (444-416) Bony fishes Cartilaginous fishes Paleozoic (543-225) Fishes with jaws & paired fins Ray-finned & Lobe-finned fishes Ordivician Jawless fishes (488-444) Vertebrate origins Jawless fishes phylum CHORDATA Cambrian 1. Dorsal nerve cord (542-488) Non-vert chordates “Cambrian explosion” 2. Notochord Rapid appearance of most 3. Gill slits Animal phyla in fossil record Including Phylum Chordata 4. Endostyle Permian (299-251) 4 3 2 1 1.Pre-mammal-like reptiles 2. Snake-lizard ancestor 3.Crocodile-Bird-Dino ancestor 4. Turtles Carboniferous (359-299) amphibians Early reptiles. Devonian (416-359) Vertebrates invade land “Age of amphibians” Silurian (444-416) Bony fishes AMNIOTES Cartilaginous fishes Paleozoic (543-225) Fishes with jaws & paired fins 1.