The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom
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Identification of Mutant Genes and Introgressed Tiger Salamander
www.nature.com/scientificreports OPEN Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Received: 13 October 2016 Accepted: 19 December 2016 Ambystoma mexicanum Published: xx xx xxxx M. Ryan Woodcock1, Jennifer Vaughn-Wolfe1, Alexandra Elias2, D. Kevin Kump1, Katharina Denise Kendall1,5, Nataliya Timoshevskaya1, Vladimir Timoshevskiy1, Dustin W. Perry3, Jeramiah J. Smith1, Jessica E. Spiewak4, David M. Parichy4,6 & S. Randal Voss1 The molecular genetic toolkit of the Mexican axolotl, a classic model organism, has matured to the point where it is now possible to identify genes for mutant phenotypes. We used a positional cloning– candidate gene approach to identify molecular bases for two historic axolotl pigment phenotypes: white and albino. White (d/d) mutants have defects in pigment cell morphogenesis and differentiation, whereas albino (a/a) mutants lack melanin. We identified in white mutants a transcriptional defect in endothelin 3 (edn3), encoding a peptide factor that promotes pigment cell migration and differentiation in other vertebrates. Transgenic restoration of Edn3 expression rescued the homozygous white mutant phenotype. We mapped the albino locus to tyrosinase (tyr) and identified polymorphisms shared between the albino allele (tyra) and tyr alleles in a Minnesota population of tiger salamanders from which the albino trait was introgressed. tyra has a 142 bp deletion and similar engineered alleles recapitulated the albino phenotype. Finally, we show that historical introgression of tyra significantly altered genomic composition of the laboratory axolotl, yielding a distinct, hybrid strain of ambystomatid salamander. Our results demonstrate the feasibility of identifying genes for traits in the laboratory Mexican axolotl. The Mexican axolotl (Ambystoma mexicanum) is the primary salamander model in biological research. -
Chordata, Tunicata, Thaliacea, Doliolida) from East Coast of Peninsular Malaysia), with an Updated Worldwide Distribution
Journal of Sustainability Science and Management ISSN: 1823-8556 Volume 13 Number 5, 2018 © Penerbit UMT TAXONOMIC REVISION OF THE FAMILY DOLIOLIDAE BRONN, 1862 (CHORDATA, TUNICATA, THALIACEA, DOLIOLIDA) FROM EAST COAST OF PENINSULAR MALAYSIA), WITH AN UPDATED WORLDWIDE DISTRIBUTION NUR ‘ALIAH BINTI ADAM1 AND NURUL HUDA AHMAD ISHAK*1, 2 1School of Marine and Environmental Sciences, Universiti Malaysia Terengganu, 21030 Kuala Nerus, Terengganu, Malaysia 2Institute of Oceanography and Environment, Universiti Malaysia Terengganu, 21030 Kuala Nerus, Terengganu, Malaysia *Corresponding author: [email protected] Abstract: The marine pelagic tunicate from the family of Doliolidae Bronn, 1862 in the coastal waters of Terengganu was studied for the first time, hereby presented in this paper. The distribution was analysed from 18 sampling stations alongside the Terengganu waters; including Pulau Bidong, Pulau Yu and Pulau Kapas. Samples were collected from April to July 2016 using 200µm Bongo net; towed vertically from a stationary vessel; and were preserved in a 5% buffered formaldehyde. Five species discovered in this family were identified as new records in Malaysian waters:Doliolum denticulatum Quoy and Gaimard, 1834, Doliolum nationalis Borgert, 1894, Dolioletta gegenbauri Uljanin, 1884, Doliolina mulleri Krohn, 1852 and Dolioloides rarum Grobben, 1882. A comprehensive review of the species description, diagnosis and a key to the phorozooid from the recorded species is herewith provided. We also deliver a detailed map of current and known worldwide occurrence of these five species, and thus consequently update the biodiversity of Malaysian fauna. KEYWORDS: Doliolid, pelagic tunicates, South China Sea, Terengganu, taxonomy, biogeography Introduction have the most complex life cycle compared to any of the pelagic tunicates; consisting of no lesser Pelagic tunicates are large transparent animals than six different and successive morphological that measure up to 25cm (Lavaniegos & Ohman, stages (Godeaux et al., 1998; Paffenhöfer & 2003). -
"Lophophorates" Brachiopoda Echinodermata Asterozoa
Deuterostomes Bryozoa Phoronida "lophophorates" Brachiopoda Echinodermata Asterozoa Stelleroidea Asteroidea Ophiuroidea Echinozoa Holothuroidea Echinoidea Crinozoa Crinoidea Chaetognatha (arrow worms) Hemichordata (acorn worms) Chordata Urochordata (sea squirt) Cephalochordata (amphioxoius) Vertebrata PHYLUM CHAETOGNATHA (70 spp) Arrow worms Fossils from the Cambrium Carnivorous - link between small phytoplankton and larger zooplankton (1-15 cm long) Pharyngeal gill pores No notochord Peculiar origin for mesoderm (not strictly enterocoelous) Uncertain relationship with echinoderms PHYLUM HEMICHORDATA (120 spp) Acorn worms Pharyngeal gill pores No notochord (Stomochord cartilaginous and once thought homologous w/notochord) Tornaria larvae very similar to asteroidea Bipinnaria larvae CLASS ENTEROPNEUSTA (acorn worms) Marine, bottom dwellers CLASS PTEROBRANCHIA Colonial, sessile, filter feeding, tube dwellers Small (1-2 mm), "U" shaped gut, no gill slits PHYLUM CHORDATA Body segmented Axial notochord Dorsal hollow nerve chord Paired gill slits Post anal tail SUBPHYLUM UROCHORDATA Marine, sessile Body covered in a cellulose tunic ("Tunicates") Filter feeder (» 200 L/day) - perforated pharnx adapted for filtering & repiration Pharyngeal basket contractable - squirts water when exposed at low tide Hermaphrodites Tadpole larvae w/chordate characteristics (neoteny) CLASS ASCIDIACEA (sea squirt/tunicate - sessile) No excretory system Open circulatory system (can reverse blood flow) Endostyle - (homologous to thyroid of vertebrates) ciliated groove -
Evidence for Selection on a Chordate Histocompatibility Locus
ORIGINAL ARTICLE doi:10.1111/j.1558-5646.2012.01787.x EVIDENCE FOR SELECTION ON A CHORDATE HISTOCOMPATIBILITY LOCUS Marie L. Nydam,1,2,3 Alyssa A. Taylor,3 and Anthony W. De Tomaso3 1Division of Science and Mathematics, Centre College, Danville, Kentucky 40422 2E-mail: [email protected] 3Department of Molecular, Cellular, and Developmental Biology, University of California Santa Barbara, Santa Barbara, California 93106 Received June 7, 2011 Accepted July 31, 2012 Allorecognition is the ability of an organism to differentiate self or close relatives from unrelated individuals. The best known applications of allorecognition are the prevention of inbreeding in hermaphroditic species (e.g., the self-incompatibility [SI] systems in plants), the vertebrate immune response to foreign antigens mediated by MHC loci, and somatic fusion, where two genetically independent individuals physically join to become a chimera. In the few model systems where the loci governing allorecognition outcomes have been identified, the corresponding proteins have exhibited exceptional polymorphism. But information about the evolution of this polymorphism outside MHC is limited. We address this subject in the ascidian Botryllus schlosseri,where allorecognition outcomes are determined by a single locus, called FuHC (Fusion/HistoCompatibility). Molecular variation in FuHC is distributed almost entirely within populations, with very little evidence for differentiation among different populations. Mutation plays a larger role than recombination in the creation of FuHC polymorphism. A selection statistic, neutrality tests, and distribution of variation within and among different populations all provide evidence for selection acting on FuHC, but are not in agreement as to whether the selection is balancing or directional. -
Brains of Primitive Chordates 439
Brains of Primitive Chordates 439 Brains of Primitive Chordates J C Glover, University of Oslo, Oslo, Norway although providing a more direct link to the evolu- B Fritzsch, Creighton University, Omaha, NE, USA tionary clock, is nevertheless hampered by differing ã 2009 Elsevier Ltd. All rights reserved. rates of evolution, both among species and among genes, and a still largely deficient fossil record. Until recently, it was widely accepted, both on morpholog- ical and molecular grounds, that cephalochordates Introduction and craniates were sister taxons, with urochordates Craniates (which include the sister taxa vertebrata being more distant craniate relatives and with hemi- and hyperotreti, or hagfishes) represent the most chordates being more closely related to echinoderms complex organisms in the chordate phylum, particu- (Figure 1(a)). The molecular data only weakly sup- larly with respect to the organization and function of ported a coherent chordate taxon, however, indicat- the central nervous system. How brain complexity ing that apparent morphological similarities among has arisen during evolution is one of the most chordates are imposed on deep divisions among the fascinating questions facing modern science, and it extant deuterostome taxa. Recent analysis of a sub- speaks directly to the more philosophical question stantially larger number of genes has reversed the of what makes us human. Considerable interest has positions of cephalochordates and urochordates, pro- therefore been directed toward understanding the moting the latter to the most closely related craniate genetic and developmental underpinnings of nervous relatives (Figure 1(b)). system organization in our more ‘primitive’ chordate relatives, in the search for the origins of the vertebrate Comparative Appearance of Brains, brain in a common chordate ancestor. -
Catalogue of the Amphibians of Venezuela: Illustrated and Annotated Species List, Distribution, and Conservation 1,2César L
Mannophryne vulcano, Male carrying tadpoles. El Ávila (Parque Nacional Guairarepano), Distrito Federal. Photo: Jose Vieira. We want to dedicate this work to some outstanding individuals who encouraged us, directly or indirectly, and are no longer with us. They were colleagues and close friends, and their friendship will remain for years to come. César Molina Rodríguez (1960–2015) Erik Arrieta Márquez (1978–2008) Jose Ayarzagüena Sanz (1952–2011) Saúl Gutiérrez Eljuri (1960–2012) Juan Rivero (1923–2014) Luis Scott (1948–2011) Marco Natera Mumaw (1972–2010) Official journal website: Amphibian & Reptile Conservation amphibian-reptile-conservation.org 13(1) [Special Section]: 1–198 (e180). Catalogue of the amphibians of Venezuela: Illustrated and annotated species list, distribution, and conservation 1,2César L. Barrio-Amorós, 3,4Fernando J. M. Rojas-Runjaic, and 5J. Celsa Señaris 1Fundación AndígenA, Apartado Postal 210, Mérida, VENEZUELA 2Current address: Doc Frog Expeditions, Uvita de Osa, COSTA RICA 3Fundación La Salle de Ciencias Naturales, Museo de Historia Natural La Salle, Apartado Postal 1930, Caracas 1010-A, VENEZUELA 4Current address: Pontifícia Universidade Católica do Río Grande do Sul (PUCRS), Laboratório de Sistemática de Vertebrados, Av. Ipiranga 6681, Porto Alegre, RS 90619–900, BRAZIL 5Instituto Venezolano de Investigaciones Científicas, Altos de Pipe, apartado 20632, Caracas 1020, VENEZUELA Abstract.—Presented is an annotated checklist of the amphibians of Venezuela, current as of December 2018. The last comprehensive list (Barrio-Amorós 2009c) included a total of 333 species, while the current catalogue lists 387 species (370 anurans, 10 caecilians, and seven salamanders), including 28 species not yet described or properly identified. Fifty species and four genera are added to the previous list, 25 species are deleted, and 47 experienced nomenclatural changes. -
Nototriton Nelsoni Is a Moss Salamander Endemic to Cloud Forest in Refugio De Vida Silvestre Texíguat, Located in the Departments of Atlántida and Yoro, Honduras
Nototriton nelsoni is a moss salamander endemic to cloud forest in Refugio de Vida Silvestre Texíguat, located in the departments of Atlántida and Yoro, Honduras. This cryptic species long was confused with N. barbouri, a morphologically similar species now considered endemic to the Sierra de Sulaco in the southern part of the department of Yoro. Like many of its congeners, N. nelsoni rarely is observed in the wild, and is known from just five specimens. Pictured here is the holotype of N. nelsoni, collected above La Liberación in Refugio de Vida Silvestre Texíguat at an elevation of 1,420 m. This salamander is one of many herpetofaunal species endemic to the Cordillera Nombre de Dios. ' © Josiah H. Townsend 909 www.mesoamericanherpetology.com www.eaglemountainpublishing.com Amphibians of the Cordillera Nombre de Dios, Honduras: COI barcoding suggests underestimated taxonomic richness in a threatened endemic fauna JOSIAH H. TOWNSEND1 AND LARRY DAVID WILSON2 1Department of Biology, Indiana University of Pennsylvania, Indiana, Pennsylvania 15705–1081, United States. E-mail: [email protected] (Corresponding author) 2Centro Zamorano de Biodiversidad, Escuela Agrícola Panamericana Zamorano, Departamento de Francisco Morazán, Honduras; 16010 SW 207th Avenue, Miami, Florida 33187-1067, United States. E-mail: [email protected] ABSTRACT: The Cordillera Nombre de Dios is a chain of mountains along the northern coast of Honduras that harbors a high degree of herpetofaunal endemism. We present a preliminary barcode reference library of amphibians from the Cordillera Nombre de Dios, based on sampling at 10 sites from 2008 to 2013. We sequenced 187 samples of 21 nominal taxa for the barcoding locus cytochrome oxidase subunit I (COI), and recovered 28 well-differentiated clades. -
Amphibian Alliance for Zero Extinction Sites in Chiapas and Oaxaca
Amphibian Alliance for Zero Extinction Sites in Chiapas and Oaxaca John F. Lamoreux, Meghan W. McKnight, and Rodolfo Cabrera Hernandez Occasional Paper of the IUCN Species Survival Commission No. 53 Amphibian Alliance for Zero Extinction Sites in Chiapas and Oaxaca John F. Lamoreux, Meghan W. McKnight, and Rodolfo Cabrera Hernandez Occasional Paper of the IUCN Species Survival Commission No. 53 The designation of geographical entities in this book, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of IUCN concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. The views expressed in this publication do not necessarily reflect those of IUCN or other participating organizations. Published by: IUCN, Gland, Switzerland Copyright: © 2015 International Union for Conservation of Nature and Natural Resources Reproduction of this publication for educational or other non-commercial purposes is authorized without prior written permission from the copyright holder provided the source is fully acknowledged. Reproduction of this publication for resale or other commercial purposes is prohibited without prior written permission of the copyright holder. Citation: Lamoreux, J. F., McKnight, M. W., and R. Cabrera Hernandez (2015). Amphibian Alliance for Zero Extinction Sites in Chiapas and Oaxaca. Gland, Switzerland: IUCN. xxiv + 320pp. ISBN: 978-2-8317-1717-3 DOI: 10.2305/IUCN.CH.2015.SSC-OP.53.en Cover photographs: Totontepec landscape; new Plectrohyla species, Ixalotriton niger, Concepción Pápalo, Thorius minutissimus, Craugastor pozo (panels, left to right) Back cover photograph: Collecting in Chamula, Chiapas Photo credits: The cover photographs were taken by the authors under grant agreements with the two main project funders: NGS and CEPF. -
Biology and Impacts of Pacific Island Invasive Species. 8
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln USDA National Wildlife Research Center - Staff U.S. Department of Agriculture: Animal and Publications Plant Health Inspection Service 2012 Biology and Impacts of Pacific Island Invasive Species. 8. Eleutherodactylus planirostris, the Greenhouse Frog (Anura: Eleutherodactylidae) Christina A. Olson Utah State University, [email protected] Karen H. Beard Utah State University, [email protected] William C. Pitt National Wildlife Research Center, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/icwdm_usdanwrc Olson, Christina A.; Beard, Karen H.; and Pitt, William C., "Biology and Impacts of Pacific Island Invasive Species. 8. Eleutherodactylus planirostris, the Greenhouse Frog (Anura: Eleutherodactylidae)" (2012). USDA National Wildlife Research Center - Staff Publications. 1174. https://digitalcommons.unl.edu/icwdm_usdanwrc/1174 This Article is brought to you for free and open access by the U.S. Department of Agriculture: Animal and Plant Health Inspection Service at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in USDA National Wildlife Research Center - Staff Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Biology and Impacts of Pacific Island Invasive Species. 8. Eleutherodactylus planirostris, the Greenhouse Frog (Anura: Eleutherodactylidae)1 Christina A. Olson,2 Karen H. Beard,2,4 and William C. Pitt 3 Abstract: The greenhouse frog, Eleutherodactylus planirostris, is a direct- developing (i.e., no aquatic stage) frog native to Cuba and the Bahamas. It was introduced to Hawai‘i via nursery plants in the early 1990s and then subsequently from Hawai‘i to Guam in 2003. The greenhouse frog is now widespread on five Hawaiian Islands and Guam. -
The Plankton Lifeform Extraction Tool: a Digital Tool to Increase The
Discussions https://doi.org/10.5194/essd-2021-171 Earth System Preprint. Discussion started: 21 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data The Plankton Lifeform Extraction Tool: A digital tool to increase the discoverability and usability of plankton time-series data Clare Ostle1*, Kevin Paxman1, Carolyn A. Graves2, Mathew Arnold1, Felipe Artigas3, Angus Atkinson4, Anaïs Aubert5, Malcolm Baptie6, Beth Bear7, Jacob Bedford8, Michael Best9, Eileen 5 Bresnan10, Rachel Brittain1, Derek Broughton1, Alexandre Budria5,11, Kathryn Cook12, Michelle Devlin7, George Graham1, Nick Halliday1, Pierre Hélaouët1, Marie Johansen13, David G. Johns1, Dan Lear1, Margarita Machairopoulou10, April McKinney14, Adam Mellor14, Alex Milligan7, Sophie Pitois7, Isabelle Rombouts5, Cordula Scherer15, Paul Tett16, Claire Widdicombe4, and Abigail McQuatters-Gollop8 1 10 The Marine Biological Association (MBA), The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. 2 Centre for Environment Fisheries and Aquacu∑lture Science (Cefas), Weymouth, UK. 3 Université du Littoral Côte d’Opale, Université de Lille, CNRS UMR 8187 LOG, Laboratoire d’Océanologie et de Géosciences, Wimereux, France. 4 Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. 5 15 Muséum National d’Histoire Naturelle (MNHN), CRESCO, 38 UMS Patrinat, Dinard, France. 6 Scottish Environment Protection Agency, Angus Smith Building, Maxim 6, Parklands Avenue, Eurocentral, Holytown, North Lanarkshire ML1 4WQ, UK. 7 Centre for Environment Fisheries and Aquaculture Science (Cefas), Lowestoft, UK. 8 Marine Conservation Research Group, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK. 9 20 The Environment Agency, Kingfisher House, Goldhay Way, Peterborough, PE4 6HL, UK. 10 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, AB11 9DB, UK. -
Amphibia: Anura: Eleutherodactylidae), from Eastern Cuba
124 SOLENODON 12: 124-135, 2015 Another new cryptic frog related to Eleutherodactylus varleyi Dunn (Amphibia: Anura: Eleutherodactylidae), from eastern Cuba Luis M. DÍAZ* and S. Blair HEDGES** *Museo Nacional de Historia Natural de Cuba, Obispo #61, Esquina Oficios, Plaza de Armas, Habana Vieja, CP 10100, Cuba. [email protected] **Department of Biology, 208 Mueller Laboratory, Pennsylvania State University, University Park, Pennsylvania 16802-530, USA. [email protected] ABSTRacT. A new cryptic frog, Eleutherodactylus beguei sp. nov., is described from the pine forests of La Munición, Yateras, Guantánamo Province, Cuba. It is sympatric with E. feichtin- geri, another recently described grass frog closely related to E. varleyi, but differs in morphol- ogy, vocalization and DNA sequences of the mitochondrial Cyt-b gene. One female of the new species was found vocalizing in response to a calling male, a behavior that is still poorly documented in anurans. Same male and female were found in axillary amplexus and sur- rounded by 9 eggs (3.5–3.7 mm in diameter) 5 hours after being isolated in a small container. Key words: Amphibia, Anura, Eleutherodactylidae, Eleutherodactylus, new species, Terrarana, Euhyas, West Indies, Guantánamo, female reciprocation calls, eggs. INtrODUCtION After a recent review of the geographic variation of the Cuban Grass Frog Eleutherodactylus varleyi Dunn, Díaz et al. (2012) described E. feichtingeri, a cryptic species widely distributed in central and eastern Cuba. the two species differ primarily in tympanum size, supratympanic stripe pattern, and advertisement calls. Species recognition was also supported by genetic and cytogenetic data. One of the authors (SBH) conducted DNA sequence analyses that confirmed the existence of two species at La Munición, Humboldt National Park. -
Axolotl Care Compiled by Dayna Willems, DVM
Axolotl Care Compiled by Dayna Willems, DVM Brief Description Axolotls (Ambystoma mexicanum) are a Mexican species of aquatic salamander that has rapidly come into the pet trade due to their hardy nature and unusual appearance. Axolotls are amphibians meaning that they do go through several stages of metamorphosis before reaching their adult form. Axolotls are unusual in that their adult/reproductive stage is the same as the juvenile aquatic stage. This is called neoteny and is often considered a “backward” step in evolution. Axolotls are closely related to Tiger Salamanders which do eventually morph into a terrestrial form. It should be noted that under extreme stress, an axolotl may morph into a terrestrial form, but their life is significantly shortened. Being amphibians, axolotls do not tolerate handling well and must stay in the water to breathe. They have sensitive skin and can absorb toxins from the water or your skin. Should you need to transport your axolotl or move it for tank maintenance, do not use a net. Nets can cause abrasions in your axolotl’s sensitive skin or damage the gills. Instead use a plastic cup to scoop your axolotl out of the enclosure. Lifespan Providing the correct care to your axolotl will ensure a long life. Average life expectancy is around 10 years, but reports have been found of axolotls living into their 20’s. Their adult size is around 10 to 12 inches; which they typically reach within the first year of their life. Sexing Axolotls reach sexual maturity when they are around 6-8 inches long.