Development of the Annelid Axochord: Insights Into Notochord Evolution Antonella Lauri Et Al
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Identical Genomic Organization of Two Hemichordate Hox Clusters
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 22, 2053–2058, November 6, 2012 ª2012 Elsevier Ltd All rights reserved http://dx.doi.org/10.1016/j.cub.2012.08.052 Report Identical Genomic Organization of Two Hemichordate Hox Clusters Robert Freeman,1,12 Tetsuro Ikuta,2,12 Michael Wu,3 [10] have similar organization to the hemichordate cluster, Ryo Koyanagi,2 Takeshi Kawashima,2 Kunifumi Tagawa,4 but with different posterior genes. These results provide Tom Humphreys,5 Guang-Chen Fang,6 Asao Fujiyama,7 genomic evidence for a well-ordered complex in the deutero- Hidetoshi Saiga,8 Christopher Lowe,9 Kim Worley,10 stome ancestor for the hox1–hox9/10 region, with the Jerry Jenkins,11 Jeremy Schmutz,11 Marc Kirschner,1 number and kind of posterior genes still to be elucidated. Daniel Rokhsar,3 Nori Satoh,2,* and John Gerhart3,* 1 Department of Systems Biology, Harvard Medical School, Results and Discussion Boston, MA 02114, USA 2 Marine Genomics Unit, Okinawa Institute of Science and Here we characterize the order, transcriptional orientation, and Technology Graduate University, Onna, clustering of the Hox genes of the genomes of two widely Okinawa 904-0495, Japan studied model hemichordates, Saccoglossus kowalevskii 3 Department of Molecular and Cell Biology, University of and Ptychodera flava [4, 11, 12], that represent two major California, Berkeley, Berkeley, CA 94720-3200, USA evolutionary branches of enteropneust hemichordates that 4 Marine Biological Laboratory, Graduate School of Science, diverged an estimated 400 million years ago (MYa) [13]: Hiroshima University, Onomichi, Hiroshima 722-0073, Japan Saccoglossus, of the direct developing harimaniids, and 5 Department of Cell and Molecular Biology, University of Ptychodera, of the indirect developing ptychoderids [14]. -
"Lophophorates" Brachiopoda Echinodermata Asterozoa
Deuterostomes Bryozoa Phoronida "lophophorates" Brachiopoda Echinodermata Asterozoa Stelleroidea Asteroidea Ophiuroidea Echinozoa Holothuroidea Echinoidea Crinozoa Crinoidea Chaetognatha (arrow worms) Hemichordata (acorn worms) Chordata Urochordata (sea squirt) Cephalochordata (amphioxoius) Vertebrata PHYLUM CHAETOGNATHA (70 spp) Arrow worms Fossils from the Cambrium Carnivorous - link between small phytoplankton and larger zooplankton (1-15 cm long) Pharyngeal gill pores No notochord Peculiar origin for mesoderm (not strictly enterocoelous) Uncertain relationship with echinoderms PHYLUM HEMICHORDATA (120 spp) Acorn worms Pharyngeal gill pores No notochord (Stomochord cartilaginous and once thought homologous w/notochord) Tornaria larvae very similar to asteroidea Bipinnaria larvae CLASS ENTEROPNEUSTA (acorn worms) Marine, bottom dwellers CLASS PTEROBRANCHIA Colonial, sessile, filter feeding, tube dwellers Small (1-2 mm), "U" shaped gut, no gill slits PHYLUM CHORDATA Body segmented Axial notochord Dorsal hollow nerve chord Paired gill slits Post anal tail SUBPHYLUM UROCHORDATA Marine, sessile Body covered in a cellulose tunic ("Tunicates") Filter feeder (» 200 L/day) - perforated pharnx adapted for filtering & repiration Pharyngeal basket contractable - squirts water when exposed at low tide Hermaphrodites Tadpole larvae w/chordate characteristics (neoteny) CLASS ASCIDIACEA (sea squirt/tunicate - sessile) No excretory system Open circulatory system (can reverse blood flow) Endostyle - (homologous to thyroid of vertebrates) ciliated groove -
Evidence for Selection on a Chordate Histocompatibility Locus
ORIGINAL ARTICLE doi:10.1111/j.1558-5646.2012.01787.x EVIDENCE FOR SELECTION ON A CHORDATE HISTOCOMPATIBILITY LOCUS Marie L. Nydam,1,2,3 Alyssa A. Taylor,3 and Anthony W. De Tomaso3 1Division of Science and Mathematics, Centre College, Danville, Kentucky 40422 2E-mail: [email protected] 3Department of Molecular, Cellular, and Developmental Biology, University of California Santa Barbara, Santa Barbara, California 93106 Received June 7, 2011 Accepted July 31, 2012 Allorecognition is the ability of an organism to differentiate self or close relatives from unrelated individuals. The best known applications of allorecognition are the prevention of inbreeding in hermaphroditic species (e.g., the self-incompatibility [SI] systems in plants), the vertebrate immune response to foreign antigens mediated by MHC loci, and somatic fusion, where two genetically independent individuals physically join to become a chimera. In the few model systems where the loci governing allorecognition outcomes have been identified, the corresponding proteins have exhibited exceptional polymorphism. But information about the evolution of this polymorphism outside MHC is limited. We address this subject in the ascidian Botryllus schlosseri,where allorecognition outcomes are determined by a single locus, called FuHC (Fusion/HistoCompatibility). Molecular variation in FuHC is distributed almost entirely within populations, with very little evidence for differentiation among different populations. Mutation plays a larger role than recombination in the creation of FuHC polymorphism. A selection statistic, neutrality tests, and distribution of variation within and among different populations all provide evidence for selection acting on FuHC, but are not in agreement as to whether the selection is balancing or directional. -
The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom
lopmen ve ta e l B Williamson, Cell Dev Biol 2012, 1:1 D io & l l o l g DOI: 10.4172/2168-9296.1000101 e y C Cell & Developmental Biology ISSN: 2168-9296 Research Article Open Access The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom Abstract The larval transfer hypothesis states that larvae originated as adults in other taxa and their genomes were transferred by hybridization. It contests the view that larvae and corresponding adults evolved from common ancestors. The present paper reviews the life histories of chordates, and it interprets them in terms of the larval transfer hypothesis. It is the first paper to apply the hypothesis to craniates. I claim that the larvae of tunicates were acquired from adult larvaceans, the larvae of lampreys from adult cephalochordates, the larvae of lungfishes from adult craniate tadpoles, and the larvae of ray-finned fishes from other ray-finned fishes in different families. The occurrence of larvae in some fishes and their absence in others is correlated with reproductive behavior. Adult amphibians evolved from adult fishes, but larval amphibians did not evolve from either adult or larval fishes. I submit that [1] early amphibians had no larvae and that several families of urodeles and one subfamily of anurans have retained direct development, [2] the tadpole larvae of anurans and urodeles were acquired separately from different Mesozoic adult tadpoles, and [3] the post-tadpole larvae of salamanders were acquired from adults of other urodeles. Reptiles, birds and mammals probably evolved from amphibians that never acquired larvae. -
Origin of Chordates Part-I
ORIGIN OF CHORDATES Evolution of chordate was one of the most important event in the history of chordate as it was the beginning of evolution of more advanced chordates like bird and mammals. It is the story of origin from a primitive invertebrate like creatures to early chordates. Though first fossil of the first vertebrate the ostrachoderm was discovered from the Ordovician period but it might have originated in late Cambrian period. As early chordates were soft bodied, their fossil records are not preserved. Hence, to trace their ancestry, we have to find out the similarity among different deuterostomes to trace the origin of chordates. Some structural features shared by them such as bilateral symmetry, antero-posterior body axis, triploblastic coelomate condition, etc., may he because of their common ancestry. TIME OF ORIGIN: Late Cambrian period PLACE OF ORIGIN: Fresh water THEORIES OF INVERTEBRATE ANCESTRY OF CHORDATES Several theories have been put forwarded to explain the origin of chordates either directly from some invertebrate group or through the intervention of some protochordate. Almost every invertebrate phylum—Coelenterata, Nemertean, Phoronida, Annelids, Arthropods and Echinodermatashas been suggested. But these theories are far from being satisfactory and convincing and have only a historical value. Only the echinoderm theory has received some acceptance. DIVISION OF BILATERIA The Bilateria is divided into two major divisions (1) Protostomia and (2) Deuterostornia. This division is based on the differences in embryonic and larval developments. Protostomia includes from Annelida to Arthropoda while deuterostomia includes Echinodermata, Pogonophora and Chordate. DEUTEROSTOME LINE OF CHORDATE EVOLUTION Following common features of all Deuterostomes suggests strong evidence of a closer evolutionary relationship between the three principal deuterostome phyla – Echinodermata, Hemichordata and Chordata. -
Biology of Chordates Video Guide
Branches on the Tree of Life DVD – CHORDATES Written and photographed by David Denning and Bruce Russell ©2005, BioMEDIA ASSOCIATES (THUMBNAIL IMAGES IN THIS GUIDE ARE FROM THE DVD PROGRAM) .. .. To many students, the phylum Chordata doesn’t seem to make much sense. It contains such apparently disparate animals as tunicates (sea squirts), lancelets, fish and humans. This program explores the evolution, structure and classification of chordates with the main goal to clarify the unity of Phylum Chordata. All chordates possess four characteristics that define the phylum, although in most species, these characteristics can only be seen during a relatively small portion of the life cycle (and this is often an embryonic or larval stage, when the animal is difficult to observe). These defining characteristics are: the notochord (dorsal stiffening rod), a hollow dorsal nerve cord; pharyngeal gills; and a post anal tail that includes the notochord and nerve cord. Subphylum Urochordata The most primitive chordates are the tunicates or sea squirts, and closely related groups such as the larvaceans (Appendicularians). In tunicates, the chordate characteristics can be observed only by examining the entire life cycle. The adult feeds using a ‘pharyngeal basket’, a type of pharyngeal gill formed into a mesh-like basket. Cilia on the gill draw water into the mouth, through the basket mesh and out the excurrent siphon. Tunicates have an unusual heart which pumps by ‘wringing out’. It also reverses direction periodically. Tunicates are usually hermaphroditic, often casting eggs and sperm directly into the sea. After fertilization, the zygote develops into a ‘tadpole larva’. This swimming larva shows the remaining three chordate characters - notochord, dorsal nerve cord and post-anal tail. -
Introduction to Phylum Chordata
Unifying Themes 1. Chordate evolution is a history of innovations that is built upon major invertebrate traits •bilateral symmetry •cephalization •segmentation •coelom or "gut" tube 2. Chordate evolution is marked by physical and behavioral specializations • For example the forelimb of mammals has a wide range of structural variation, specialized by natural selection 3. Evolutionary innovations and specializations led to adaptive radiations - the development of a variety of forms from a single ancestral group Characteristics of the Chordates 1. Notochord 2. dorsal hollow nerve cord 3. pharyngeal gill slits 4. postanal tail 5. endostyle Characteristics of the Chordates Notochord •stiff, flexible rod, provides internal support • Remains throughout the life of most invertebrate chordates • only in the embryos of vertebrate chordates Characteristics of the Chordates cont. Dorsal Hollow Nerve Cord (Spinal Cord) •fluid-filled tube of nerve tissue, runs the length of the animal, just dorsal to the notochord • Present in chordates throughout embryonic and adult life Characteristics of the Chordates cont. Pharyngeal gill slits • Pairs of opening through the pharynx • Invertebrate chordates use them to filter food •In fishes the gill sits develop into true gills • In reptiles, birds, and mammals the gill slits are vestiges (occurring only in the embryo) Characteristics of the Chordates cont. Endostyle • mucous secreting structure found in the pharynx floor (traps small food particles) Characteristics of the Chordates cont. Postanal Tail • works with muscles (myomeres) & notochord to provide motility & stability • Aids in propulsion in nonvertebrates & fish but vestigial in later lineages SubPhylum Urochordata Ex: tunicates or sea squirts • Sessile as adults, but motile during the larval stages • Possess all 5 chordate characteristics as larvae • Settle head first on hard substrates and undergo a dramatic metamorphosis • tail, notochord, muscle segments, and nerve cord disappear SubPhylum Urochordata cont. -
Hemichordate Phylogeny: a Molecular, and Genomic Approach By
Hemichordate Phylogeny: A molecular, and genomic approach by Johanna Taylor Cannon A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 4, 2014 Keywords: phylogeny, evolution, Hemichordata, bioinformatics, invertebrates Copyright 2014 by Johanna Taylor Cannon Approved by Kenneth M. Halanych, Chair, Professor of Biological Sciences Jason Bond, Associate Professor of Biological Sciences Leslie Goertzen, Associate Professor of Biological Sciences Scott Santos, Associate Professor of Biological Sciences Abstract The phylogenetic relationships within Hemichordata are significant for understanding the evolution of the deuterostomes. Hemichordates possess several important morphological structures in common with chordates, and they have been fixtures in hypotheses on chordate origins for over 100 years. However, current evidence points to a sister relationship between echinoderms and hemichordates, indicating that these chordate-like features were likely present in the last common ancestor of these groups. Therefore, Hemichordata should be highly informative for studying deuterostome character evolution. Despite their importance for understanding the evolution of chordate-like morphological and developmental features, relationships within hemichordates have been poorly studied. At present, Hemichordata is divided into two classes, the solitary, free-living enteropneust worms, and the colonial, tube- dwelling Pterobranchia. The objective of this dissertation is to elucidate the evolutionary relationships of Hemichordata using multiple datasets. Chapter 1 provides an introduction to Hemichordata and outlines the objectives for the dissertation research. Chapter 2 presents a molecular phylogeny of hemichordates based on nuclear ribosomal 18S rDNA and two mitochondrial genes. In this chapter, we suggest that deep-sea family Saxipendiidae is nested within Harrimaniidae, and Torquaratoridae is affiliated with Ptychoderidae. -
The Genetic Factors of Bilaterian Evolution Peter Heger1*, Wen Zheng1†, Anna Rottmann1, Kristen a Panfilio2,3, Thomas Wiehe1
RESEARCH ARTICLE The genetic factors of bilaterian evolution Peter Heger1*, Wen Zheng1†, Anna Rottmann1, Kristen A Panfilio2,3, Thomas Wiehe1 1Institute for Genetics, Cologne Biocenter, University of Cologne, Cologne, Germany; 2Institute for Zoology: Developmental Biology, Cologne Biocenter, University of Cologne, Cologne, Germany; 3School of Life Sciences, University of Warwick, Gibbet Hill Campus, Coventry, United Kingdom Abstract The Cambrian explosion was a unique animal radiation ~540 million years ago that produced the full range of body plans across bilaterians. The genetic mechanisms underlying these events are unknown, leaving a fundamental question in evolutionary biology unanswered. Using large-scale comparative genomics and advanced orthology evaluation techniques, we identified 157 bilaterian-specific genes. They include the entire Nodal pathway, a key regulator of mesoderm development and left-right axis specification; components for nervous system development, including a suite of G-protein-coupled receptors that control physiology and behaviour, the Robo- Slit midline repulsion system, and the neurotrophin signalling system; a high number of zinc finger transcription factors; and novel factors that previously escaped attention. Contradicting the current view, our study reveals that genes with bilaterian origin are robustly associated with key features in extant bilaterians, suggesting a causal relationship. *For correspondence: [email protected] Introduction The taxon Bilateria consists of multicellular animals -
Zoology Lab Manual
General Zoology Lab Supplement Stephen W. Ziser Department of Biology Pinnacle Campus To Accompany the Zoology Lab Manual: Smith, D. G. & M. P. Schenk Exploring Zoology: A Laboratory Guide. Morton Publishing Co. for BIOL 1413 General Zoology 2017.5 Biology 1413 Introductory Zoology – Supplement to Lab Manual; Ziser 2015.12 1 General Zoology Laboratory Exercises 1. Orientation, Lab Safety, Animal Collection . 3 2. Lab Skills & Microscopy . 14 3. Animal Cells & Tissues . 15 4. Animal Organs & Organ Systems . 17 5. Animal Reproduction . 25 6. Animal Development . 27 7. Some Animal-Like Protists . 31 8. The Animal Kingdom . 33 9. Phylum Porifera (Sponges) . 47 10. Phyla Cnidaria (Jellyfish & Corals) & Ctenophora . 49 11. Phylum Platyhelminthes (Flatworms) . 52 12. Phylum Nematoda (Roundworms) . 56 13. Phyla Rotifera . 59 14. Acanthocephala, Gastrotricha & Nematomorpha . 60 15. Phylum Mollusca (Molluscs) . 67 16. Phyla Brachiopoda & Ectoprocta . 73 17. Phylum Annelida (Segmented Worms) . 74 18. Phyla Sipuncula . 78 19. Phylum Arthropoda (I): Trilobita, Myriopoda . 79 20. Phylum Arthropoda (II): Chelicerata . 81 21. Phylum Arthropods (III): Crustacea . 86 22. Phylum Arthropods (IV): Hexapoda . 90 23. Phyla Onycophora & Tardigrada . 97 24. Phylum Echinodermata (Echinoderms) . .104 25. Phyla Chaetognatha & Hemichordata . 108 26. Phylum Chordata (I): Lower Chordates & Agnatha . 109 27. Phylum Chordata (II): Chondrichthyes & Osteichthyes . 112 28. Phylum Chordata (III): Amphibia . 115 29. Phylum Chordata (IV): Reptilia . 118 30. Phylum Chordata (V): Aves . 121 31. Phylum Chordata (VI): Mammalia . 124 Lab Reports & Assignments Identifying Animal Phyla . 39 Identifying Common Freshwater Invertebrates . 42 Lab Report for Practical #1 . 43 Lab Report for Practical #2 . 62 Identification of Insect Orders . 96 Lab Report for Practical #3 . -
3.5 Life Gets
compelling. Researchershave found fossils in 2.6-billion-yearo1d rocks,for example,that bear a striking resemblanceto cyanobac- teria,the lineageof bacteriathat carriesout photosynthesis.That's exactlywhen the first evidenceof atmosphericoxygen appearsin the fossil record; between 2.45 and 2.32 billion years ago,oxygen increaseddramatically. The rise in oxygen was likely the result of the emergenceof cyanobacteria,which releaseoxygen during photosynthesis.While oxygen levels increaseddramatically dur- ing this time, they were still very low compared to today. As a result,purple sulfur bacteriawere still abundant1.6 billion years ago,as reflectedby the presenceof okenane. Archaeaalso make an early but ambiguous-appearance in the fossil record. ln 2006, Yuichiro Ueno and his colleaguesat Tokyo Institute of Technologywere able to extract methane from 3.S-billionyear-old rocks from Australia.The methane had a low fraction of carbon-13,indicating that it had been producedbio- logically(Ueno et al. 2006).Only one group of organismsalive todayreleases methane: a lineageofarchaea called Euryarchaeota. Among the placesthey live today is the digestivetract of cows; they'rethe reasonsthat cow belchescontain methane. Eukaryaemerge in the fossil record only about 1.8 billion yearsago. Their first fossilsare single celled organisms measuring about 100micrometers across. While they would havebeen invis- ible to the nakedeye, they marked a giant leap in size,measur- ing about 100times biggerthan a typical bacterium.These early eukaryoteshad ridges,plates, and otherstructures that aresimilar to thoseof living singlecelled eukaryotes. Over the next billion years,the diversityof thesesingle-celled eukaryotes increased, as some lineagesevolved to carry out photosynthesiswhile others preyed on bacteriaor grazedon their photosyntheticrelatives (Knollet al.2OO6\. -
A Stem Group Echinoderm from the Basal Cambrian of China and the Origins of Ambulacraria
ARTICLE https://doi.org/10.1038/s41467-019-09059-3 OPEN A stem group echinoderm from the basal Cambrian of China and the origins of Ambulacraria Timothy P. Topper 1,2,3, Junfeng Guo4, Sébastien Clausen 5, Christian B. Skovsted2 & Zhifei Zhang1 Deuterostomes are a morphologically disparate clade, encompassing the chordates (including vertebrates), the hemichordates (the vermiform enteropneusts and the colonial tube-dwelling pterobranchs) and the echinoderms (including starfish). Although deuter- 1234567890():,; ostomes are considered monophyletic, the inter-relationships between the three clades remain highly contentious. Here we report, Yanjiahella biscarpa, a bilaterally symmetrical, solitary metazoan from the early Cambrian (Fortunian) of China with a characteristic echinoderm-like plated theca, a muscular stalk reminiscent of the hemichordates and a pair of feeding appendages. Our phylogenetic analysis indicates that Y. biscarpa is a stem- echinoderm and not only is this species the oldest and most basal echinoderm, but it also predates all known hemichordates, and is among the earliest deuterostomes. This taxon confirms that echinoderms acquired plating before pentaradial symmetry and that their history is rooted in bilateral forms. Yanjiahella biscarpa shares morphological similarities with both enteropneusts and echinoderms, indicating that the enteropneust body plan is ancestral within hemichordates. 1 Shaanxi Key Laboratory of Early Life and Environments, State Key Laboratory of Continental Dynamics and Department of Geology, Northwest University, 710069 Xi’an, China. 2 Department of Palaeobiology, Swedish Museum of Natural History, Box 50007104 05, Stockholm, Sweden. 3 Department of Earth Sciences, Durham University, Durham DH1 3LE, UK. 4 School of Earth Science and Resources, Key Laboratory for the study of Focused Magmatism and Giant Ore Deposits, MLR, Chang’an University, 710054 Xi’an, China.