Introduction to the Bilateria and the Phylum Xenacoelomorpha Triploblasty and Bilateral Symmetry Provide New Avenues for Animal Radiation
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Flatworms Phylum Platyhelminthes
Flatworms Phylum Platyhelminthes The flatworms include more than 13,000 species of free-living and parasitic species.There are 3 classes of flat- worms, the planarians, flukes and tapeworms. General Physical Traits (Anatomy): Flatworms are bilaterally symmetrical. This means that they can only be cut them length-wise to produce two mirror-image halves. They have a distinct right and left half. This is differ- ent from radially symmetrical animals, like the anemones, which can be cut anywhere top to bottom to get two similar halves. Flatworms have 3 tissue layers, compared to the 2 layers in sponges and cnidarians (jellyfishes, anemones and corals). They also have only one opening for food to enter and waste to leave, like the sponges and cnidarians. This is called a “sac” body plan. Planarian (class Tubellaria) Habitat: They live mostly in saltwater (marine) habitats, but are also found in freshwater. Habits: They are free-living flatworms (not parasites). Physical Traits (Anatomy): Planarians are small - less than a centimeter long. They have a head, brain and sense organs. This is called “cephalization.” The sense organs – called eyespots – look like eyes and are sensitive to light changes, but are not like human eyes. They are made up of simple nerve cells that respond to stimuli, like light. When many nerve cells are gathered in one place, they are called a “ganglion,” so the two eyespots are actually ganglia. They also have points on either side of the head that look a bit like ears, called “sensory lobes” or auricles. They do not hear, but can sense food. -
Systema Naturae∗
Systema Naturae∗ c Alexey B. Shipunov v. 5.802 (June 29, 2008) 7 Regnum Monera [ Bacillus ] /Bacteria Subregnum Bacteria [ 6:8Bacillus ]1 Superphylum Posibacteria [ 6:2Bacillus ] stat.m. Phylum 1. Firmicutes [ 6Bacillus ]2 Classis 1(1). Thermotogae [ 5Thermotoga ] i.s. 2(2). Mollicutes [ 5Mycoplasma ] 3(3). Clostridia [ 5Clostridium ]3 4(4). Bacilli [ 5Bacillus ] 5(5). Symbiobacteres [ 5Symbiobacterium ] Phylum 2. Actinobacteria [ 6Actynomyces ] Classis 1(6). Actinobacteres [ 5Actinomyces ] Phylum 3. Hadobacteria [ 6Deinococcus ] sed.m. Classis 1(7). Hadobacteres [ 5Deinococcus ]4 Superphylum Negibacteria [ 6:2Rhodospirillum ] stat.m. Phylum 4. Chlorobacteria [ 6Chloroflexus ]5 Classis 1(8). Ktedonobacteres [ 5Ktedonobacter ] sed.m. 2(9). Thermomicrobia [ 5Thermomicrobium ] 3(10). Chloroflexi [ 5Chloroflexus ] ∗Only recent taxa. Viruses are not included. Abbreviations and signs: sed.m. (sedis mutabilis); stat.m. (status mutabilis): s., aut i. (superior, aut interior); i.s. (incertae sedis); sed.p. (sedis possibilis); s.str. (sensu stricto); s.l. (sensu lato); incl. (inclusum); excl. (exclusum); \quotes" for environmental groups; * (asterisk) for paraphyletic taxa; / (slash) at margins for major clades (\domains"). 1Incl. \Nanobacteria" i.s. et dubitativa, \OP11 group" i.s. 2Incl. \TM7" i.s., \OP9", \OP10". 3Incl. Dictyoglomi sed.m., Fusobacteria, Thermolithobacteria. 4= Deinococcus{Thermus. 5Incl. Thermobaculum i.s. 1 4(11). Dehalococcoidetes [ 5Dehalococcoides ] 5(12). Anaerolineae [ 5Anaerolinea ]6 Phylum 5. Cyanobacteria [ 6Nostoc ] Classis 1(13). Gloeobacteres [ 5Gloeobacter ] 2(14). Chroobacteres [ 5Chroococcus ]7 3(15). Hormogoneae [ 5Nostoc ] Phylum 6. Bacteroidobacteria [ 6Bacteroides ]8 Classis 1(16). Fibrobacteres [ 5Fibrobacter ] 2(17). Chlorobi [ 5Chlorobium ] 3(18). Salinibacteres [ 5Salinibacter ] 4(19). Bacteroidetes [ 5Bacteroides ]9 Phylum 7. Spirobacteria [ 6Spirochaeta ] Classis 1(20). Spirochaetes [ 5Spirochaeta ] s.l.10 Phylum 8. Planctobacteria [ 6Planctomyces ]11 Classis 1(21). -
Identical Genomic Organization of Two Hemichordate Hox Clusters
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 22, 2053–2058, November 6, 2012 ª2012 Elsevier Ltd All rights reserved http://dx.doi.org/10.1016/j.cub.2012.08.052 Report Identical Genomic Organization of Two Hemichordate Hox Clusters Robert Freeman,1,12 Tetsuro Ikuta,2,12 Michael Wu,3 [10] have similar organization to the hemichordate cluster, Ryo Koyanagi,2 Takeshi Kawashima,2 Kunifumi Tagawa,4 but with different posterior genes. These results provide Tom Humphreys,5 Guang-Chen Fang,6 Asao Fujiyama,7 genomic evidence for a well-ordered complex in the deutero- Hidetoshi Saiga,8 Christopher Lowe,9 Kim Worley,10 stome ancestor for the hox1–hox9/10 region, with the Jerry Jenkins,11 Jeremy Schmutz,11 Marc Kirschner,1 number and kind of posterior genes still to be elucidated. Daniel Rokhsar,3 Nori Satoh,2,* and John Gerhart3,* 1 Department of Systems Biology, Harvard Medical School, Results and Discussion Boston, MA 02114, USA 2 Marine Genomics Unit, Okinawa Institute of Science and Here we characterize the order, transcriptional orientation, and Technology Graduate University, Onna, clustering of the Hox genes of the genomes of two widely Okinawa 904-0495, Japan studied model hemichordates, Saccoglossus kowalevskii 3 Department of Molecular and Cell Biology, University of and Ptychodera flava [4, 11, 12], that represent two major California, Berkeley, Berkeley, CA 94720-3200, USA evolutionary branches of enteropneust hemichordates that 4 Marine Biological Laboratory, Graduate School of Science, diverged an estimated 400 million years ago (MYa) [13]: Hiroshima University, Onomichi, Hiroshima 722-0073, Japan Saccoglossus, of the direct developing harimaniids, and 5 Department of Cell and Molecular Biology, University of Ptychodera, of the indirect developing ptychoderids [14]. -
"Lophophorates" Brachiopoda Echinodermata Asterozoa
Deuterostomes Bryozoa Phoronida "lophophorates" Brachiopoda Echinodermata Asterozoa Stelleroidea Asteroidea Ophiuroidea Echinozoa Holothuroidea Echinoidea Crinozoa Crinoidea Chaetognatha (arrow worms) Hemichordata (acorn worms) Chordata Urochordata (sea squirt) Cephalochordata (amphioxoius) Vertebrata PHYLUM CHAETOGNATHA (70 spp) Arrow worms Fossils from the Cambrium Carnivorous - link between small phytoplankton and larger zooplankton (1-15 cm long) Pharyngeal gill pores No notochord Peculiar origin for mesoderm (not strictly enterocoelous) Uncertain relationship with echinoderms PHYLUM HEMICHORDATA (120 spp) Acorn worms Pharyngeal gill pores No notochord (Stomochord cartilaginous and once thought homologous w/notochord) Tornaria larvae very similar to asteroidea Bipinnaria larvae CLASS ENTEROPNEUSTA (acorn worms) Marine, bottom dwellers CLASS PTEROBRANCHIA Colonial, sessile, filter feeding, tube dwellers Small (1-2 mm), "U" shaped gut, no gill slits PHYLUM CHORDATA Body segmented Axial notochord Dorsal hollow nerve chord Paired gill slits Post anal tail SUBPHYLUM UROCHORDATA Marine, sessile Body covered in a cellulose tunic ("Tunicates") Filter feeder (» 200 L/day) - perforated pharnx adapted for filtering & repiration Pharyngeal basket contractable - squirts water when exposed at low tide Hermaphrodites Tadpole larvae w/chordate characteristics (neoteny) CLASS ASCIDIACEA (sea squirt/tunicate - sessile) No excretory system Open circulatory system (can reverse blood flow) Endostyle - (homologous to thyroid of vertebrates) ciliated groove -
Platyhelminthes, Nemertea, and "Aschelminthes" - A
BIOLOGICAL SCIENCE FUNDAMENTALS AND SYSTEMATICS – Vol. III - Platyhelminthes, Nemertea, and "Aschelminthes" - A. Schmidt-Rhaesa PLATYHELMINTHES, NEMERTEA, AND “ASCHELMINTHES” A. Schmidt-Rhaesa University of Bielefeld, Germany Keywords: Platyhelminthes, Nemertea, Gnathifera, Gnathostomulida, Micrognathozoa, Rotifera, Acanthocephala, Cycliophora, Nemathelminthes, Gastrotricha, Nematoda, Nematomorpha, Priapulida, Kinorhyncha, Loricifera Contents 1. Introduction 2. General Morphology 3. Platyhelminthes, the Flatworms 4. Nemertea (Nemertini), the Ribbon Worms 5. “Aschelminthes” 5.1. Gnathifera 5.1.1. Gnathostomulida 5.1.2. Micrognathozoa (Limnognathia maerski) 5.1.3. Rotifera 5.1.4. Acanthocephala 5.1.5. Cycliophora (Symbion pandora) 5.2. Nemathelminthes 5.2.1. Gastrotricha 5.2.2. Nematoda, the Roundworms 5.2.3. Nematomorpha, the Horsehair Worms 5.2.4. Priapulida 5.2.5. Kinorhyncha 5.2.6. Loricifera Acknowledgements Glossary Bibliography Biographical Sketch Summary UNESCO – EOLSS This chapter provides information on several basal bilaterian groups: flatworms, nemerteans, Gnathifera,SAMPLE and Nemathelminthes. CHAPTERS These include species-rich taxa such as Nematoda and Platyhelminthes, and as taxa with few or even only one species, such as Micrognathozoa (Limnognathia maerski) and Cycliophora (Symbion pandora). All Acanthocephala and subgroups of Platyhelminthes and Nematoda, are parasites that often exhibit complex life cycles. Most of the taxa described are marine, but some have also invaded freshwater or the terrestrial environment. “Aschelminthes” are not a natural group, instead, two taxa have been recognized that were earlier summarized under this name. Gnathifera include taxa with a conspicuous jaw apparatus such as Gnathostomulida, Micrognathozoa, and Rotifera. Although they do not possess a jaw apparatus, Acanthocephala also belong to Gnathifera due to their epidermal structure. ©Encyclopedia of Life Support Systems (EOLSS) BIOLOGICAL SCIENCE FUNDAMENTALS AND SYSTEMATICS – Vol. -
Spermiogenesis in the Acoel Symsagittifera Roscoffensis: Nucleus-Plasma
bioRxiv preprint doi: https://doi.org/10.1101/828251; this version posted November 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Spermiogenesis in the acoel Symsagittifera roscoffensis: nucleus-plasma membrane contact sites and microtubules. Matthew J. Hayes1, Anne-C. Zakrzewski2, Tim P. Levine1 and Maximilian J. Telford2 1University College London Institute of Ophthalmology, 11-43 Bath Street, London EC1V 9EL, UK 2 Centre for Life’s Origins and Evolution, Department of Genetics, Evolution and Environment, University College London, Gower Street, London, WC1E 6BT, UK Running title: Contact sites and microtubule rearrangements in spermiogenesis Summary sentence: During spermiogenesis in the acoel flatworm Symsagittifera roscoffensis, two previously unidentified contact sites contribute to the structure of the mature spermatozoon and the axonemal structures show direct continuity between doublet and dense core microtubules. Keywords: Contact-site, acrosome, gamete biology, spermatid, spermatogenesis, spermiogenesis, acoel. bioRxiv preprint doi: https://doi.org/10.1101/828251; this version posted November 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract Symsagittifera roscoffensis is a small marine worm found in the intertidal zone of sandy beaches around the European shores of the Atlantic. S. roscoffensis is a member of the Acoelomorpha, a group of flatworms formerly classified with the Platyhelminthes, but now recognised as Xenacoelomorpha, a separate phylum of disputed affinity. -
Number of Living Species in Australia and the World
Numbers of Living Species in Australia and the World 2nd edition Arthur D. Chapman Australian Biodiversity Information Services australia’s nature Toowoomba, Australia there is more still to be discovered… Report for the Australian Biological Resources Study Canberra, Australia September 2009 CONTENTS Foreword 1 Insecta (insects) 23 Plants 43 Viruses 59 Arachnida Magnoliophyta (flowering plants) 43 Protoctista (mainly Introduction 2 (spiders, scorpions, etc) 26 Gymnosperms (Coniferophyta, Protozoa—others included Executive Summary 6 Pycnogonida (sea spiders) 28 Cycadophyta, Gnetophyta under fungi, algae, Myriapoda and Ginkgophyta) 45 Chromista, etc) 60 Detailed discussion by Group 12 (millipedes, centipedes) 29 Ferns and Allies 46 Chordates 13 Acknowledgements 63 Crustacea (crabs, lobsters, etc) 31 Bryophyta Mammalia (mammals) 13 Onychophora (velvet worms) 32 (mosses, liverworts, hornworts) 47 References 66 Aves (birds) 14 Hexapoda (proturans, springtails) 33 Plant Algae (including green Reptilia (reptiles) 15 Mollusca (molluscs, shellfish) 34 algae, red algae, glaucophytes) 49 Amphibia (frogs, etc) 16 Annelida (segmented worms) 35 Fungi 51 Pisces (fishes including Nematoda Fungi (excluding taxa Chondrichthyes and (nematodes, roundworms) 36 treated under Chromista Osteichthyes) 17 and Protoctista) 51 Acanthocephala Agnatha (hagfish, (thorny-headed worms) 37 Lichen-forming fungi 53 lampreys, slime eels) 18 Platyhelminthes (flat worms) 38 Others 54 Cephalochordata (lancelets) 19 Cnidaria (jellyfish, Prokaryota (Bacteria Tunicata or Urochordata sea anenomes, corals) 39 [Monera] of previous report) 54 (sea squirts, doliolids, salps) 20 Porifera (sponges) 40 Cyanophyta (Cyanobacteria) 55 Invertebrates 21 Other Invertebrates 41 Chromista (including some Hemichordata (hemichordates) 21 species previously included Echinodermata (starfish, under either algae or fungi) 56 sea cucumbers, etc) 22 FOREWORD In Australia and around the world, biodiversity is under huge Harnessing core science and knowledge bases, like and growing pressure. -
Phylum Chordata
Phylum Chordata 48,000 species very diverse phylum but still more unity in major characteristics than in most other phyla most advanced phylum of animal kingdom one to which we belong along with fish, amphibians reptiles, birds and other mammals some of the largest or most massive animals true coelom 4 major identifying characteristics: 1. Notochord flexible rodlike structure enclosed by a fibrous sheath extends the length of the body in larva and/or adult provides basic support and serves as main axis for muscle attachments to permit “fishlike” undulatory movements first part of skeleton to form in embryo in primitive chordates the notochord persists through life Animals: Chordates & Introduction to Vertebrates; Ziser Lecture Notes, 2006 1 in most chordates the notochord is replaced by a vertebral column of bone remnants of the notochord remain as “intervertebral discs” 2. Dorsal tubular nerve cord in most invert groups; nerve cord is ventral & paired in chordates the nerve cord is a single dorsal hollow nerve cord front end usually enlarged to form brain 3. Pharyngeal (gill) slits slit-like opening sleading from throat to outside first evolved as a filter feeding apparatus still used by some to filter water for food in others as gills in some groups they are only found in embryo and lost as adults 4. endostyle or thyroid gland specific kind of tissue found only in chordates was originally part of the feeding apparatus endostyle secretes mucus and traps food inside the pharyngeal cavity eg. lamprey larva in most chordates the same tissue has become an endocrine Animals: Chordates & Introduction to Vertebrates; Ziser Lecture Notes, 2006 2 gland in the neck region that helps control metabolism 5. -
Tropical Marine Invertebrates CAS BI 569 Phylum Echinodermata by J
Tropical Marine Invertebrates CAS BI 569 Phylum Echinodermata by J. R. Finnerty Porifera Ctenophora Cnidaria Deuterostomia Ecdysozoa Lophotrochozoa Chordata Arthropoda Annelida Hemichordata Onychophora Mollusca Echinodermata *Nematoda *Platyhelminthes Acoelomorpha Calcispongia Silicispongiae PROTOSTOMIA Phylum Phylum Phylum CHORDATA ECHINODERMATA HEMICHORDATA Blastopore -> anus Radial / equal cleavage Coelom forms by enterocoely ! Protostome = blastopore contributes to the mouth blastopore mouth anus ! Deuterostome = blastopore becomes anus blastopore anus mouth Halocynthia, a tunicate (Urochordata) Coelom Formation Protostomes: Schizocoely Deuterostomes: Enterocoely Enterocoely in a sea star Axocoel (protocoel) Gives rise to small portion of water vascular system. Hydrocoel (mesocoel) Gives rise to water vascular system. Somatocoel (metacoel) Gives rise to lining of adult body cavity. Echinoderm Metamorphosis ECHINODERM FEATURES Water vascular system and tube feet Pentaradial symmetry Coelom formation by enterocoely Water Vascular System Tube Foot Tube Foot Locomotion ECHINODERM DIVERSITY Crinoidea Asteroidea Ophiuroidea Holothuroidea Echinoidea “sea lilies” “sea stars” “brittle stars” “sea cucumbers” “urchins, sand dollars” Group Form & Habit Habitat Ossicles Feeding Special Characteristics Crinoids 5-200 arms, stalked epifaunal Internal skeleton suspension mouth upward; mucous & Of each arm feeders secreting glands on sessile podia Ophiuroids usually 5 thin arms, epifaunal ossicles in arms deposit feeders act and appear like vertebrae -
Chlorophyta Is a Division of Green Algae, Informally Called
Chlorophyta is a division of green algae, informally waters of the Sargasso Sea. Many brown algae, such as called chlorophytes. The name is used in two very members of the order Fucales, commonly grow along different senses so that care is needed to determine the rocky seashores. Some members of the class are used as use by a particular author. In older classification food for humans. systems, it refers to a highly paraphyletic group of all Worldwide there are about 1500–2000 species of brown the green algae within the green plants (Viridiplantae), algae.[4] Some species are of sufficient commercial and thus includes about 7,000 species [4] [5] of mostly importance, such as Ascophyllum nodosum , that they aquatic photosynthetic eukaryotic organisms. Like the have become subjects of extensive research in their own land plants (bryophytes and tracheophytes), green algae right.[5] [4] contain chlorophylls a and b, and store food as starch Brown algae belong to a very large group, the in their plastids. Heterokontophyta, a eukaryotic group of organisms In newer classifications, it refers to one of the two distinguished most prominently by having chloroplasts clades making up the Viridiplantae, which are the surrounded by four membranes, suggesting an origin chlorophytes and the streptophytes or charophytes.[6][7] from a symbiotic relationship between a basal In this sense it includes only about 4,300 species.[3] eukaryote and another eukaryotic organism. Most brown algae contain the pigment fucoxanthin, which is responsible for the distinctive greenish-brown color that The red algae, or Rhodophyta ( / r o ʊ ˈ d ɒ f ɨ t ə / or / gives them their name. -
Development of the Annelid Axochord: Insights Into Notochord Evolution Antonella Lauri Et Al
RESEARCH | REPORTS ORIGIN OF NOTOCHORD by double WMISH (Fig. 2, F to L). Although none of the genes were exclusively expressed in the annelid mesodermal midline, their combined Development of the annelid coexpression was unique to these cells (implying that mesodermal midline in annelids and chor- damesoderm in vertebrates are more similar to axochord: Insights into each other than to any other tissue). It is unlikely that the molecular similarity between annelid notochord evolution and vertebrate mesodermal midline is due to in- dependent co-option of a conserved gene cas- Antonella Lauri,1*† Thibaut Brunet,1* Mette Handberg-Thorsager,1,2‡ sette, because this would require either that this Antje H.L. Fischer,1§ Oleg Simakov,1 Patrick R. H. Steinmetz,1‖ Raju Tomer,1,2¶ cassette was active elsewhere in the body (which Philipp J. Keller,2 Detlev Arendt1,3# is not the case) or that multiple identical inde- pendent events of co-option occurred (which is The origin of chordates has been debated for more than a century, with one key issue being unparsimonious). As in vertebrates, the meso- the emergence of the notochord. In vertebrates, the notochord develops by convergence dermal midline resembles the neuroectodermal and extension of the chordamesoderm, a population of midline cells of unique molecular midline, which expresses foxD, foxA, netrin, slit, identity. We identify a population of mesodermal cells in a developing invertebrate, the marine and noggin (figs. S6 and S7) but not brachyury or annelid Platynereis dumerilii, that converges and extends toward the midline and expresses a twist. However, unlike in chicken (10), the an- notochord-specific combination of genes. -
Mitochondrial Genomes of Two Polydora
www.nature.com/scientificreports OPEN Mitochondrial genomes of two Polydora (Spionidae) species provide further evidence that mitochondrial architecture in the Sedentaria (Annelida) is not conserved Lingtong Ye1*, Tuo Yao1, Jie Lu1, Jingzhe Jiang1 & Changming Bai2 Contrary to the early evidence, which indicated that the mitochondrial architecture in one of the two major annelida clades, Sedentaria, is relatively conserved, a handful of relatively recent studies found evidence that some species exhibit elevated rates of mitochondrial architecture evolution. We sequenced complete mitogenomes belonging to two congeneric shell-boring Spionidae species that cause considerable economic losses in the commercial marine mollusk aquaculture: Polydora brevipalpa and Polydora websteri. The two mitogenomes exhibited very similar architecture. In comparison to other sedentarians, they exhibited some standard features, including all genes encoded on the same strand, uncommon but not unique duplicated trnM gene, as well as a number of unique features. Their comparatively large size (17,673 bp) can be attributed to four non-coding regions larger than 500 bp. We identifed an unusually large (putative) overlap of 14 bases between nad2 and cox1 genes in both species. Importantly, the two species exhibited completely rearranged gene orders in comparison to all other available mitogenomes. Along with Serpulidae and Sabellidae, Polydora is the third identifed sedentarian lineage that exhibits disproportionally elevated rates of mitogenomic architecture rearrangements. Selection analyses indicate that these three lineages also exhibited relaxed purifying selection pressures. Abbreviations NCR Non-coding region PCG Protein-coding gene Metazoan mitochondrial genomes (mitogenomes) usually encode the set of 37 genes, comprising 2 rRNAs, 22 tRNAs, and 13 proteins, encoded on both genomic strands.