Phylum Porifera
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Identical Genomic Organization of Two Hemichordate Hox Clusters
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 22, 2053–2058, November 6, 2012 ª2012 Elsevier Ltd All rights reserved http://dx.doi.org/10.1016/j.cub.2012.08.052 Report Identical Genomic Organization of Two Hemichordate Hox Clusters Robert Freeman,1,12 Tetsuro Ikuta,2,12 Michael Wu,3 [10] have similar organization to the hemichordate cluster, Ryo Koyanagi,2 Takeshi Kawashima,2 Kunifumi Tagawa,4 but with different posterior genes. These results provide Tom Humphreys,5 Guang-Chen Fang,6 Asao Fujiyama,7 genomic evidence for a well-ordered complex in the deutero- Hidetoshi Saiga,8 Christopher Lowe,9 Kim Worley,10 stome ancestor for the hox1–hox9/10 region, with the Jerry Jenkins,11 Jeremy Schmutz,11 Marc Kirschner,1 number and kind of posterior genes still to be elucidated. Daniel Rokhsar,3 Nori Satoh,2,* and John Gerhart3,* 1 Department of Systems Biology, Harvard Medical School, Results and Discussion Boston, MA 02114, USA 2 Marine Genomics Unit, Okinawa Institute of Science and Here we characterize the order, transcriptional orientation, and Technology Graduate University, Onna, clustering of the Hox genes of the genomes of two widely Okinawa 904-0495, Japan studied model hemichordates, Saccoglossus kowalevskii 3 Department of Molecular and Cell Biology, University of and Ptychodera flava [4, 11, 12], that represent two major California, Berkeley, Berkeley, CA 94720-3200, USA evolutionary branches of enteropneust hemichordates that 4 Marine Biological Laboratory, Graduate School of Science, diverged an estimated 400 million years ago (MYa) [13]: Hiroshima University, Onomichi, Hiroshima 722-0073, Japan Saccoglossus, of the direct developing harimaniids, and 5 Department of Cell and Molecular Biology, University of Ptychodera, of the indirect developing ptychoderids [14]. -
(1104L) Animal Kingdom Part I
(1104L) Animal Kingdom Part I By: Jeffrey Mahr (1104L) Animal Kingdom Part I By: Jeffrey Mahr Online: < http://cnx.org/content/col12086/1.1/ > OpenStax-CNX This selection and arrangement of content as a collection is copyrighted by Jerey Mahr. It is licensed under the Creative Commons Attribution License 4.0 (http://creativecommons.org/licenses/by/4.0/). Collection structure revised: October 17, 2016 PDF generated: October 17, 2016 For copyright and attribution information for the modules contained in this collection, see p. 58. Table of Contents 1 (1104L) Animals introduction ....................................................................1 2 (1104L) Characteristics of Animals ..............................................................3 3 (1104L)The Evolutionary History of the Animal Kingdom ..................................11 4 (1104L) Phylum Porifera ........................................................................23 5 (1104L) Phylum Cnidaria .......................................................................31 6 (1104L) Phylum Rotifera & Phylum Platyhelminthes ........................................45 Glossary .............................................................................................53 Index ................................................................................................56 Attributions .........................................................................................58 iv Available for free at Connexions <http://cnx.org/content/col12086/1.1> Chapter 1 (1104L) Animals introduction1 -
A Non-Bilaterian Perspective on the Development and Evolution of Animal Digestive Systems
Cell and Tissue Research (2019) 377:321–339 https://doi.org/10.1007/s00441-019-03075-x REVIEW A non-bilaterian perspective on the development and evolution of animal digestive systems Patrick R. H. Steinmetz 1 Received: 22 March 2019 /Accepted: 8 July 2019 /Published online: 7 August 2019 # The Author(s) 2019 Abstract Digestive systems and extracellular digestion are key animal features, but their emergence during early animal evolution is currently poorly understood. As the last common ancestor of non-bilaterian animal groups (sponges, ctenophores, placozoans and cnidarians) dates back to the beginning of animal life, their study and comparison provides important insights into the early evolution of digestive systems and functions. Here, I have compiled an overview of the development and cell biology of digestive tissues in non-bilaterian animals. I will highlight the fundamental differences between extracellular and intracellular digestive processes, and how these are distributed among animals. Cnidarians (e.g. sea anemones, corals, jellyfish), the phylogenetic outgroup of bilaterians (e.g. vertebrates, flies, annelids), occupy a key position to reconstruct the evolution of bilaterian gut evolution. A major focus will therefore lie on the development and cell biology of digestive tissues in cnidarians, especially sea anemones, and how they compare to bilaterian gut tissues. In that context, I will also review how a recent study on the gastrula fate map of the sea anemone Nematostella vectensis challenges our long-standing conceptions on the evolution of cnidarian and bilaterian germ layers and guts. Keywords Cnidaria . Porifera . Placozoa . Ctenophora . Gastrovascular system . Gut evolution . Extracellular digestion . Intracellular digestion . Germ layer evolution Introduction ester bonds. -
The Use of Inflammation by Tumor Cells
223 COMMENTARY The Use of Inflammation by Tumor Cells 1 Jose-Ignacio Arias, M.D., Ph.D. 2 Marı´a-Angeles Aller, M.D., Ph.D. 2 Jaime Arias, M.D., Ph.D. 1 Servicio de Cirugı´a General, Hospital Monte Naranco, Oviedo, Asturias, Spain. 2 Ca´tedra de Cirugı´a, Departamento de Cirugı´a I, Facultad de Medicina, Universidad Complutense de Madrid, Madrid, Spain. ancer is malignant, because tumor cells invade neighboring tis- Csues and survive in these ectopic sites. This invasion permits them to enter into the circulation, from which they can reach distant organs and, eventually, form secondary tumors, called metastases.1 The classical metastatic cascade encompasses intravasation by tumor cells, circulation of these cells in lymph and blood vascular systems, arrest in distant organs, extravasation, and growth into met- astatic foci.1,2 However, the tumor cells can adopt a great variety of phenotypes; and, due to this plasticity of the malignant cells; it has been proposed that a more dynamic view is needed for the metastatic cascade.2,3 Invasion and metastases are not unique for cancer, because they also occur during embryonic development, in adult tissue mainte- nance, and in many noncancerous diseases, such as in repair pro- cesses.1,2 In relation to the latter, tumor cells have been described as wounds that do not heal.4 Both tissue repair, a beneficial process, and tumor formation, a harmful process, share some molecular mechanisms that can be ascribed to inflammation.1,2,5 Therefore, in one sense, it is possible that inflammation is shared by both processes: tissue repair and tumor formation. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Tropical Marine Invertebrates CAS BI 569 Phylum Echinodermata by J
Tropical Marine Invertebrates CAS BI 569 Phylum Echinodermata by J. R. Finnerty Porifera Ctenophora Cnidaria Deuterostomia Ecdysozoa Lophotrochozoa Chordata Arthropoda Annelida Hemichordata Onychophora Mollusca Echinodermata *Nematoda *Platyhelminthes Acoelomorpha Calcispongia Silicispongiae PROTOSTOMIA Phylum Phylum Phylum CHORDATA ECHINODERMATA HEMICHORDATA Blastopore -> anus Radial / equal cleavage Coelom forms by enterocoely ! Protostome = blastopore contributes to the mouth blastopore mouth anus ! Deuterostome = blastopore becomes anus blastopore anus mouth Halocynthia, a tunicate (Urochordata) Coelom Formation Protostomes: Schizocoely Deuterostomes: Enterocoely Enterocoely in a sea star Axocoel (protocoel) Gives rise to small portion of water vascular system. Hydrocoel (mesocoel) Gives rise to water vascular system. Somatocoel (metacoel) Gives rise to lining of adult body cavity. Echinoderm Metamorphosis ECHINODERM FEATURES Water vascular system and tube feet Pentaradial symmetry Coelom formation by enterocoely Water Vascular System Tube Foot Tube Foot Locomotion ECHINODERM DIVERSITY Crinoidea Asteroidea Ophiuroidea Holothuroidea Echinoidea “sea lilies” “sea stars” “brittle stars” “sea cucumbers” “urchins, sand dollars” Group Form & Habit Habitat Ossicles Feeding Special Characteristics Crinoids 5-200 arms, stalked epifaunal Internal skeleton suspension mouth upward; mucous & Of each arm feeders secreting glands on sessile podia Ophiuroids usually 5 thin arms, epifaunal ossicles in arms deposit feeders act and appear like vertebrae -
Comparative Neuroanatomy of Mollusks and Nemerteans in the Context of Deep Metazoan Phylogeny
Comparative Neuroanatomy of Mollusks and Nemerteans in the Context of Deep Metazoan Phylogeny Von der Fakultät für Mathematik, Informatik und Naturwissenschaften der RWTH Aachen University zur Erlangung des akademischen Grades einer Doktorin der Naturwissenschaften genehmigte Dissertation vorgelegt von Diplom-Biologin Simone Faller aus Frankfurt am Main Berichter: Privatdozent Dr. Rudolf Loesel Universitätsprofessor Dr. Peter Bräunig Tag der mündlichen Prüfung: 09. März 2012 Diese Dissertation ist auf den Internetseiten der Hochschulbibliothek online verfügbar. Contents 1 General Introduction 1 Deep Metazoan Phylogeny 1 Neurophylogeny 2 Mollusca 5 Nemertea 6 Aim of the thesis 7 2 Neuroanatomy of Minor Mollusca 9 Introduction 9 Material and Methods 10 Results 12 Caudofoveata 12 Scutopus ventrolineatus 12 Falcidens crossotus 16 Solenogastres 16 Dorymenia sarsii 16 Polyplacophora 20 Lepidochitona cinerea 20 Acanthochitona crinita 20 Scaphopoda 22 Antalis entalis 22 Entalina quinquangularis 24 Discussion 25 Structure of the brain and nerve cords 25 Caudofoveata 25 Solenogastres 26 Polyplacophora 27 Scaphopoda 27 i CONTENTS Evolutionary considerations 28 Relationship among non-conchiferan molluscan taxa 28 Position of the Scaphopoda within Conchifera 29 Position of Mollusca within Protostomia 30 3 Neuroanatomy of Nemertea 33 Introduction 33 Material and Methods 34 Results 35 Brain 35 Cerebral organ 38 Nerve cords and peripheral nervous system 38 Discussion 38 Peripheral nervous system 40 Central nervous system 40 In search for the urbilaterian brain 42 4 General Discussion 45 Evolution of higher brain centers 46 Neuroanatomical glossary and data matrix – Essential steps toward a cladistic analysis of neuroanatomical data 49 5 Summary 53 6 Zusammenfassung 57 7 References 61 Danksagung 75 Lebenslauf 79 ii iii 1 General Introduction Deep Metazoan Phylogeny The concept of phylogeny follows directly from the theory of evolution as published by Charles Darwin in The origin of species (1859). -
Development of the Annelid Axochord: Insights Into Notochord Evolution Antonella Lauri Et Al
RESEARCH | REPORTS ORIGIN OF NOTOCHORD by double WMISH (Fig. 2, F to L). Although none of the genes were exclusively expressed in the annelid mesodermal midline, their combined Development of the annelid coexpression was unique to these cells (implying that mesodermal midline in annelids and chor- damesoderm in vertebrates are more similar to axochord: Insights into each other than to any other tissue). It is unlikely that the molecular similarity between annelid notochord evolution and vertebrate mesodermal midline is due to in- dependent co-option of a conserved gene cas- Antonella Lauri,1*† Thibaut Brunet,1* Mette Handberg-Thorsager,1,2‡ sette, because this would require either that this Antje H.L. Fischer,1§ Oleg Simakov,1 Patrick R. H. Steinmetz,1‖ Raju Tomer,1,2¶ cassette was active elsewhere in the body (which Philipp J. Keller,2 Detlev Arendt1,3# is not the case) or that multiple identical inde- pendent events of co-option occurred (which is The origin of chordates has been debated for more than a century, with one key issue being unparsimonious). As in vertebrates, the meso- the emergence of the notochord. In vertebrates, the notochord develops by convergence dermal midline resembles the neuroectodermal and extension of the chordamesoderm, a population of midline cells of unique molecular midline, which expresses foxD, foxA, netrin, slit, identity. We identify a population of mesodermal cells in a developing invertebrate, the marine and noggin (figs. S6 and S7) but not brachyury or annelid Platynereis dumerilii, that converges and extends toward the midline and expresses a twist. However, unlike in chicken (10), the an- notochord-specific combination of genes. -
Tropical Marine Invertebrates CAS BI 569 Major Animal Characters Part 2 — Adult Bodyplan Features by J
Tropical Marine Invertebrates CAS BI 569 Major Animal Characters Part 2 — Adult Bodyplan Features by J. R. Finnerty Metazoan Characters Part II. Adult Body Plan Features CHARACTER states EPITHELIUM: present; absent; BODY LAYERS: diploblastic; triploblastic BODY CAVITIES: precoelomate; acoelomate; pseudocoelomate; eucoelomate; GUT: absent; blind sac; through-gut; SYMMETRY: asymmetrical; radial; bi-radial; bilateral; pentaradial SKELETON: “spicules;” “bones;” hydrostat; exoskeleton EPITHELIUM Sheet of cells that lines body cavities or covers outer body surfaces. E.g., skin, gut lining Creates extracellular compartments four key characteristics: 1.continuous — uninterrupted layer 2. intercellular junctions cell 3. polarity (apical vs. basal) 4. basal lamina (extracellular matrix on which basal cell surface rests; collagen secreted by cells) Ruppert et al., Figure 6.1 3 Body Layers (Germ Layers) Germ layers form during gastrulation ectoderm blastocoel blastocoel endoderm gut blastoderm BLASTULA blastopore 4 Diploblastic Condition Two germ layers, endoderm & ectoderm blastocoel blastocoel endoderm gut gut ectoderm ectoderm 5 Triploblastic Condition Three germ layers, endoderm, ectoderm, & mesoderm. blastocoel gut ectoderm Body Cavities I. Blastocoel the central cavity in the hollow blastula the 1st body cavity II. Archenteron “primitive gut” opens to the outside via the blastopore lined by endoderm III. Coelom cavity entirely lined by mesoderm A pseudocoelom is only partially lined by mesoderm. It may represent a persistent blastocoel. Character -
Mitochondrial Genomes of Two Polydora
www.nature.com/scientificreports OPEN Mitochondrial genomes of two Polydora (Spionidae) species provide further evidence that mitochondrial architecture in the Sedentaria (Annelida) is not conserved Lingtong Ye1*, Tuo Yao1, Jie Lu1, Jingzhe Jiang1 & Changming Bai2 Contrary to the early evidence, which indicated that the mitochondrial architecture in one of the two major annelida clades, Sedentaria, is relatively conserved, a handful of relatively recent studies found evidence that some species exhibit elevated rates of mitochondrial architecture evolution. We sequenced complete mitogenomes belonging to two congeneric shell-boring Spionidae species that cause considerable economic losses in the commercial marine mollusk aquaculture: Polydora brevipalpa and Polydora websteri. The two mitogenomes exhibited very similar architecture. In comparison to other sedentarians, they exhibited some standard features, including all genes encoded on the same strand, uncommon but not unique duplicated trnM gene, as well as a number of unique features. Their comparatively large size (17,673 bp) can be attributed to four non-coding regions larger than 500 bp. We identifed an unusually large (putative) overlap of 14 bases between nad2 and cox1 genes in both species. Importantly, the two species exhibited completely rearranged gene orders in comparison to all other available mitogenomes. Along with Serpulidae and Sabellidae, Polydora is the third identifed sedentarian lineage that exhibits disproportionally elevated rates of mitogenomic architecture rearrangements. Selection analyses indicate that these three lineages also exhibited relaxed purifying selection pressures. Abbreviations NCR Non-coding region PCG Protein-coding gene Metazoan mitochondrial genomes (mitogenomes) usually encode the set of 37 genes, comprising 2 rRNAs, 22 tRNAs, and 13 proteins, encoded on both genomic strands. -
The Unique Skeleton of Siliceous Sponges (Porifera; Hexactinellida and Demospongiae) That Evolved first from the Urmetazoa During the Proterozoic: a Review” by W
Biogeosciences Discuss., 4, S262–S276, 2007 Biogeosciences www.biogeosciences-discuss.net/4/S262/2007/ BGD Discussions c Author(s) 2007. This work is licensed 4, S262–S276, 2007 under a Creative Commons License. Interactive Comment Interactive comment on “The unique skeleton of siliceous sponges (Porifera; Hexactinellida and Demospongiae) that evolved first from the Urmetazoa during the Proterozoic: a review” by W. E. G. Müller et al. W. E. G. Müller et al. Received and published: 3 April 2007 3rd April 2007 Full Screen / Esc From : Prof. Dr. W.E.G. Müller, Institut für Physiologische Chemie, Abteilung Ange- wandte Molekularbiologie, Universität, Duesbergweg 6, 55099 Mainz; GERMANY. tel.: Printer-friendly Version +49-6131-392-5910; fax.: +49-6131-392-5243; E-mail: [email protected] To the Editorial Board Interactive Discussion MS-NR: bgd-2006-0069 Discussion Paper S262 EGU Dear colleagues: BGD Thank you for your email from April 2nd informing me that our manuscript entitled: 4, S262–S276, 2007 The unique skeleton of siliceous sponges (Porifera; Hexactinellida and Demospongiae) that evolved first from the Urmetazoa during the Proterozoic: a review by: Werner E.G. Müller, Jinhe Li, Heinz C. Schröder, Li Qiao and Xiaohong Wang Interactive Comment which we submit for the Journal Biogeosciences must be revised. In the following we discuss point for point the arguments raised by the referees/reader. In detail: Interactive comment on “The unique skeleton of siliceous sponges (Porifera; Hex- actinellida and Demospongiae) that evolved first from the Urmetazoa during the Pro- terozoic: a review” by W. E. G. Müller et al. By: M. -
Arctic and Antarctic Bryozoan Communities and Facies
© Biologiezentrum Linz/Austria; download unter www.biologiezentrum.at Bryozoans in polar latitudes: Arctic and Antarctic bryozoan communities and facies B. BADER & P. SCHÄFER Abstract: Bryozoan community patterns and facies of high to sub-polar environments of both hemi- spheres were investigated. Despite the overall similarities between Arctic/Subarctic and Antarctic ma- rine environments, they differ distinctly regarding their geological history and hydrography which cause differences in species characteristics and community structure. For the first time six benthic communi- ties were distinguished and described for the Artie realm where bryozoans play an important role in the community structure. Lag deposits resulting from isostatic uplift characterise the eastbound shelves of the Nordic Seas with bryozoan faunas dominated by species encrusting glacial boulders and excavated infaunal molluscs. Bryozoan-rich carbonates occur on shelf banks if terrigenous input is channelled by fjords and does not affect sedimentary processes on the banks. Due to strong terrigenous input on the East Greenland shelf, benthic filter feeding communities including a larger diversity and abundance of bryozoans are rare and restricted to open shelf banks separated from the continental shelf. Isolated ob- stacles like seamount Vesterisbanken, although under fully polar conditions, provide firm substrates and high and seasonal food supply, which favour bryozoans-rich benthic filter-feeder communities. In con- trast, the Weddell Sea/Antarctic shelf is characterised by iceberg grounding that causes considerable damage to the benthic communities. Sessile organisms are eradicated and pioneer species begin to grow in high abundances on the devastated substrata. Whereas the Arctic bryozoan fauna displays a low de- gree of endemism due to genera with many species, Antarctic bryozoans show a high degree of en- demism due to a high number of genera with only one or few species.