Lesson 2 Craniate/Vertebrate Characteristics Lesson Outline
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The Phylum Vertebrata: a Case for Zoological Recognition Naoki Irie1,2* , Noriyuki Satoh3 and Shigeru Kuratani4
Irie et al. Zoological Letters (2018) 4:32 https://doi.org/10.1186/s40851-018-0114-y REVIEW Open Access The phylum Vertebrata: a case for zoological recognition Naoki Irie1,2* , Noriyuki Satoh3 and Shigeru Kuratani4 Abstract The group Vertebrata is currently placed as a subphylum in the phylum Chordata, together with two other subphyla, Cephalochordata (lancelets) and Urochordata (ascidians). The past three decades, have seen extraordinary advances in zoological taxonomy and the time is now ripe for reassessing whether the subphylum position is truly appropriate for vertebrates, particularly in light of recent advances in molecular phylogeny, comparative genomics, and evolutionary developmental biology. Four lines of current research are discussed here. First, molecular phylogeny has demonstrated that Deuterostomia comprises Ambulacraria (Echinodermata and Hemichordata) and Chordata (Cephalochordata, Urochordata, and Vertebrata), each clade being recognized as a mutually comparable phylum. Second, comparative genomic studies show that vertebrates alone have experienced two rounds of whole-genome duplication, which makes the composition of their gene family unique. Third, comparative gene-expression profiling of vertebrate embryos favors an hourglass pattern of development, the most conserved stage of which is recognized as a phylotypic period characterized by the establishment of a body plan definitively associated with a phylum. This mid-embryonic conservation is supported robustly in vertebrates, but only weakly in chordates. Fourth, certain complex patterns of body plan formation (especially of the head, pharynx, and somites) are recognized throughout the vertebrates, but not in any other animal groups. For these reasons, we suggest that it is more appropriate to recognize vertebrates as an independent phylum, not as a subphylum of the phylum Chordata. -
"Lophophorates" Brachiopoda Echinodermata Asterozoa
Deuterostomes Bryozoa Phoronida "lophophorates" Brachiopoda Echinodermata Asterozoa Stelleroidea Asteroidea Ophiuroidea Echinozoa Holothuroidea Echinoidea Crinozoa Crinoidea Chaetognatha (arrow worms) Hemichordata (acorn worms) Chordata Urochordata (sea squirt) Cephalochordata (amphioxoius) Vertebrata PHYLUM CHAETOGNATHA (70 spp) Arrow worms Fossils from the Cambrium Carnivorous - link between small phytoplankton and larger zooplankton (1-15 cm long) Pharyngeal gill pores No notochord Peculiar origin for mesoderm (not strictly enterocoelous) Uncertain relationship with echinoderms PHYLUM HEMICHORDATA (120 spp) Acorn worms Pharyngeal gill pores No notochord (Stomochord cartilaginous and once thought homologous w/notochord) Tornaria larvae very similar to asteroidea Bipinnaria larvae CLASS ENTEROPNEUSTA (acorn worms) Marine, bottom dwellers CLASS PTEROBRANCHIA Colonial, sessile, filter feeding, tube dwellers Small (1-2 mm), "U" shaped gut, no gill slits PHYLUM CHORDATA Body segmented Axial notochord Dorsal hollow nerve chord Paired gill slits Post anal tail SUBPHYLUM UROCHORDATA Marine, sessile Body covered in a cellulose tunic ("Tunicates") Filter feeder (» 200 L/day) - perforated pharnx adapted for filtering & repiration Pharyngeal basket contractable - squirts water when exposed at low tide Hermaphrodites Tadpole larvae w/chordate characteristics (neoteny) CLASS ASCIDIACEA (sea squirt/tunicate - sessile) No excretory system Open circulatory system (can reverse blood flow) Endostyle - (homologous to thyroid of vertebrates) ciliated groove -
Przedstawiciele Rodzaju Craniscus Dali, 1871 Z Górnego Oksfordu Bielaw I Wapienna Na Kujawach
Przedstawic iele rodza ju Craniscus Da li. 187 1 z górnego oksfordu Bielaw i Wapienna na Kujawach 75 Przedstawiciele rodzaju Craniscus Dali, 1871 z górnego oksfordu Bielaw i Wapienna na Kujawach Representatives of the genus Craniscus Dali, 1871, from the Upper Oxfordian of Bielawy and Wapienno in Kujawy area Cezary KRAWCZYŃSKI Instytut Geologii Pod stawowej. Wydziat Geologii. Un iwers ytet Warszawski. ul. Ż wirk i i Wigury 93. 02-089 Warszaw a; e-mail : c.kra [email protected] Key words: Craniidae, Craniscus, Inarticulated Brachiopods, Upper Jurassic, Poland. ABSTRACT: The presented paper contains a detailed description of four species of the genus Craniscus DalI, 1871, found in the Upper Oxfordian of Bielawy and Wapienno quarries, Kujawy area. Three of them: Craniscus bipartitus (Munster, 1837), Craniscus antiquior (Jelly, 1843) and Craniscus corallinus (Quenstedt, 1852) have already been described from Poland, the fourth, however - Craniscus tripartitus (Munster, 1840) , had only been known from the Lower Oxfordian of North Bavaria. The Craniscus specimens come from slope deposits of sponge-microbialitic bioherm. This is indicated by the fact that almost all specimens are dorsal valves, separated posthumously from ventral valves. The condition of some specimens and the rock lithology suggests, that the deposition was very violent in some cases and brachiopods were buried alive. The studied material is relatively well-preserved, which alIowes an accurate reading of the location of muscle scal's. WSTĘP BUDOWA GEOLOGICZNA I STRATYGRAFIA Praca niniejsza zawiera opis czterech gatunków W kamieniołomach Wapienno i Bielawy eksplo kranii z rodzaju Craniscus Dall, 1871, znalezionych atowane są wapienie biohermy gąbkowo-mikrobial w osadach górnego oksfordu odsłoniętych w kamie itowej oraz jej skłonu, które stanowią fragment niołomach Wapienno i Bielawy (fig. -
Evidence for Selection on a Chordate Histocompatibility Locus
ORIGINAL ARTICLE doi:10.1111/j.1558-5646.2012.01787.x EVIDENCE FOR SELECTION ON A CHORDATE HISTOCOMPATIBILITY LOCUS Marie L. Nydam,1,2,3 Alyssa A. Taylor,3 and Anthony W. De Tomaso3 1Division of Science and Mathematics, Centre College, Danville, Kentucky 40422 2E-mail: [email protected] 3Department of Molecular, Cellular, and Developmental Biology, University of California Santa Barbara, Santa Barbara, California 93106 Received June 7, 2011 Accepted July 31, 2012 Allorecognition is the ability of an organism to differentiate self or close relatives from unrelated individuals. The best known applications of allorecognition are the prevention of inbreeding in hermaphroditic species (e.g., the self-incompatibility [SI] systems in plants), the vertebrate immune response to foreign antigens mediated by MHC loci, and somatic fusion, where two genetically independent individuals physically join to become a chimera. In the few model systems where the loci governing allorecognition outcomes have been identified, the corresponding proteins have exhibited exceptional polymorphism. But information about the evolution of this polymorphism outside MHC is limited. We address this subject in the ascidian Botryllus schlosseri,where allorecognition outcomes are determined by a single locus, called FuHC (Fusion/HistoCompatibility). Molecular variation in FuHC is distributed almost entirely within populations, with very little evidence for differentiation among different populations. Mutation plays a larger role than recombination in the creation of FuHC polymorphism. A selection statistic, neutrality tests, and distribution of variation within and among different populations all provide evidence for selection acting on FuHC, but are not in agreement as to whether the selection is balancing or directional. -
Brains of Primitive Chordates 439
Brains of Primitive Chordates 439 Brains of Primitive Chordates J C Glover, University of Oslo, Oslo, Norway although providing a more direct link to the evolu- B Fritzsch, Creighton University, Omaha, NE, USA tionary clock, is nevertheless hampered by differing ã 2009 Elsevier Ltd. All rights reserved. rates of evolution, both among species and among genes, and a still largely deficient fossil record. Until recently, it was widely accepted, both on morpholog- ical and molecular grounds, that cephalochordates Introduction and craniates were sister taxons, with urochordates Craniates (which include the sister taxa vertebrata being more distant craniate relatives and with hemi- and hyperotreti, or hagfishes) represent the most chordates being more closely related to echinoderms complex organisms in the chordate phylum, particu- (Figure 1(a)). The molecular data only weakly sup- larly with respect to the organization and function of ported a coherent chordate taxon, however, indicat- the central nervous system. How brain complexity ing that apparent morphological similarities among has arisen during evolution is one of the most chordates are imposed on deep divisions among the fascinating questions facing modern science, and it extant deuterostome taxa. Recent analysis of a sub- speaks directly to the more philosophical question stantially larger number of genes has reversed the of what makes us human. Considerable interest has positions of cephalochordates and urochordates, pro- therefore been directed toward understanding the moting the latter to the most closely related craniate genetic and developmental underpinnings of nervous relatives (Figure 1(b)). system organization in our more ‘primitive’ chordate relatives, in the search for the origins of the vertebrate Comparative Appearance of Brains, brain in a common chordate ancestor. -
PALEONTOLOGICAL TECHNICAL REPORT: 6Th AVENUE and WADSWORTH BOULEVARD INTERCHANGE PHASE II ENVIRONMENTAL ASSESSMENT, CITY of LAKEWOOD, JEFFERSON COUNTY, COLORADO
PALEONTOLOGICAL TECHNICAL REPORT: 6th AVENUE AND WADSWORTH BOULEVARD INTERCHANGE PHASE II ENVIRONMENTAL ASSESSMENT, CITY OF LAKEWOOD, JEFFERSON COUNTY, COLORADO Prepared for: TEC Inc. 1746 Cole Boulevard, Suite 265 Golden, CO 80401 Prepared by: Paul C. Murphey, Ph.D. and David Daitch M.S. Rocky Mountain Paleontology 4614 Lonespur Court Oceanside, CA 92056 303-514-1095; 760-758-4019 www.rockymountainpaleontology.com Prepared under State of Colorado Paleontological Permit 2007-33 January, 2007 TABLE OF CONTENTS 1.0 SUMMARY............................................................................................................................. 3 2.0 INTRODUCTION ................................................................................................................... 4 2.1 DEFINITION AND SIGNIFICANCE OF PALEONTOLOGICAL RESOURCES........... 4 3.0 METHODS .............................................................................................................................. 6 4.0. LAWS, ORDINANCES, REGULATIONS AND STANDARDS......................................... 7 4.1. Federal................................................................................................................................. 7 4.2. State..................................................................................................................................... 8 4.3. County................................................................................................................................. 8 4.4. City..................................................................................................................................... -
The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom
lopmen ve ta e l B Williamson, Cell Dev Biol 2012, 1:1 D io & l l o l g DOI: 10.4172/2168-9296.1000101 e y C Cell & Developmental Biology ISSN: 2168-9296 Research Article Open Access The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom Abstract The larval transfer hypothesis states that larvae originated as adults in other taxa and their genomes were transferred by hybridization. It contests the view that larvae and corresponding adults evolved from common ancestors. The present paper reviews the life histories of chordates, and it interprets them in terms of the larval transfer hypothesis. It is the first paper to apply the hypothesis to craniates. I claim that the larvae of tunicates were acquired from adult larvaceans, the larvae of lampreys from adult cephalochordates, the larvae of lungfishes from adult craniate tadpoles, and the larvae of ray-finned fishes from other ray-finned fishes in different families. The occurrence of larvae in some fishes and their absence in others is correlated with reproductive behavior. Adult amphibians evolved from adult fishes, but larval amphibians did not evolve from either adult or larval fishes. I submit that [1] early amphibians had no larvae and that several families of urodeles and one subfamily of anurans have retained direct development, [2] the tadpole larvae of anurans and urodeles were acquired separately from different Mesozoic adult tadpoles, and [3] the post-tadpole larvae of salamanders were acquired from adults of other urodeles. Reptiles, birds and mammals probably evolved from amphibians that never acquired larvae. -
Phylum Arthropod Silvia Rondon, and Mary Corp, OSU Extension Entomologist and Agronomist, Respectively Hermiston Research and Extension Center, Hermiston, Oregon
Phylum Arthropod Silvia Rondon, and Mary Corp, OSU Extension Entomologist and Agronomist, respectively Hermiston Research and Extension Center, Hermiston, Oregon Member of the Phyllum Arthropoda can be found in the seas, in fresh water, on land, or even flying freely; a group with amazing differences of structure, and so abundant that all the other animals taken together are less than 1/6 as many as the arthropods. Well-known members of this group are the Kingdom lobsters, crayfish and crabs; scorpions, spiders, mites, ticks, Phylum Phylum Phylum Class the centipedes and millipedes; and last, but not least, the Order most abundant of all, the insects. Family Genus The Phylum Arthropods consist of the following Species classes: arachnids, chilopods, diplopods, crustaceans and hexapods (insects). All arthropods possess: • Exoskeleton. A hard protective covering around the outside of the body (divided by sutures into plates called sclerites). An insect's exoskeleton (integument) serves as a protective covering over the body, but also as a surface for muscle attachment, a water-tight barrier against desiccation, and a sensory interface with the environment. It is a multi-layered structure with four functional regions: epicuticle (top layer), procuticle, epidermis, and basement membrane. • Segmented body • Jointed limbs and jointed mouthparts that allow extensive specialization • Bilateral symmetry, whereby a central line can divide the body Insect molting or removing its into two identical halves, left and right exoesqueleton • Ventral nerve -
Travels on the Backbone Crest (A Group of Embryonic Cells)
BOOKS & ARTS COMMENT EVOLUTION non-deuterostomes. In the most effective section, he strips vertebrates down to their parts, such as the nerve cord, notochord (fore- runner of the vertebral column) and neural Travels on the backbone crest (a group of embryonic cells). He even delves into the largely ignored gut and viscera. Chris Lowe lauds a study of vertebrate origins that Gee discusses how data from living and brings us up to date with a shifting field. fossilized hemichordates and echinoderms have facilitated the search for the origins of the defining chordate anatomies. He ome of the great remaining mysteries groups belong in the highlights how palaeontological, develop- in zoology concern origins — of multi- deuterostome lineage mental and genomic data now all support cellularity, complex nervous systems, of animals alongside the idea that the common ancestor of chor- Slife cycles and sex, for example. The chordates — have dates, hemichordates and echinoderms had evolutionary origin of vertebrates is among largely been resolved. pharyngeal gill slits for filter feeding. That the most intractable of these, despite more Others are as intrac- gives us a glimpse of the early chordate ances- than a century of work spanning a range of table as ever, including tor, which lived around 600 million years ago. disciplines and animal groups. where to place key fos- Other features, such as a complex brain, prob- In Across the Bridge, Henry Gee reviews sil groups such as the ably emerged much later. Having established the most recent research in this area. Gee curious vetulicolians, Across the Bridge: a hazy picture of the earliest chordates, Gee (the senior editor responsible for palae- which lived during Understanding focuses on building vertebrates and their the Origin of the ontology and evolutionary development the Cambrian period, Vertebrates defining features from the basic chordate at Nature) synthesizes contributions from some 541 million to HENRY GEE body plan, for example through spectacular anatomy, developmental biology, genomics, 485 million years ago. -
Resembling Those of Antigen Receptors Receptor Family with A
Hagfish Leukocytes Express a Paired Receptor Family with a Variable Domain Resembling Those of Antigen Receptors This information is current as Takashi Suzuki, Tadasu Shin-I, Asao Fujiyama, Yuji Kohara of September 29, 2021. and Masanori Kasahara J Immunol 2005; 174:2885-2891; ; doi: 10.4049/jimmunol.174.5.2885 http://www.jimmunol.org/content/174/5/2885 Downloaded from References This article cites 37 articles, 11 of which you can access for free at: http://www.jimmunol.org/content/174/5/2885.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on September 29, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2005 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Hagfish Leukocytes Express a Paired Receptor Family with a Variable Domain Resembling Those of Antigen Receptors1,2 Takashi Suzuki,* Tadasu Shin-I,§ Asao Fujiyama,†¶ʈ Yuji Kohara,‡§ and Masanori Kasahara3* Jawed vertebrates are equipped with TCR and BCR with the capacity to rearrange their V domains. -
Treatise on Invertebrate Paleontology
PART H, Revised BRACHIOPODA VOLUMES 2 & 3: Linguliformea, Craniiformea, and Rhynchonelliformea (part) ALWYN WILLIAMS, S. J. CARLSON, C. H. C. BRUNTON, L. E. HOLMER, L. E. POPOV, MICHAL MERGL, J. R. LAURIE, M. G. BASSETT, L. R. M. COCKS, RONG JIA-YU, S. S. LAZAREV, R. E. GRANT, P. R. RACHEBOEUF, JIN YU-GAN, B. R. WARDLAW, D. A. T. HARPER, A. D. WRIGHT, and MADIS RUBEL CONTENTS INFORMATION ON TREATISE VOLUMES ...................................................................................... x EDITORIAL PREFACE .............................................................................................................. xi STRATIGRAPHIC DIVISIONS .................................................................................................. xxiv COORDINATING AUTHOR'S PREFACE (Alwyn Williams) ........................................................ xxv BRACHIOPOD CLASSIFICATION (Alwyn Williams, Sandra J. Carlson, and C. Howard C. Brunton) .................................. 1 Historical Review .............................................................................................................. 1 Basis for Classification ....................................................................................................... 5 Methods.......................................................................................................................... 5 Genealogies ....................................................................................................................... 6 Recent Brachiopods ....................................................................................................... -
Development of the Annelid Axochord: Insights Into Notochord Evolution Antonella Lauri Et Al
RESEARCH | REPORTS ORIGIN OF NOTOCHORD by double WMISH (Fig. 2, F to L). Although none of the genes were exclusively expressed in the annelid mesodermal midline, their combined Development of the annelid coexpression was unique to these cells (implying that mesodermal midline in annelids and chor- damesoderm in vertebrates are more similar to axochord: Insights into each other than to any other tissue). It is unlikely that the molecular similarity between annelid notochord evolution and vertebrate mesodermal midline is due to in- dependent co-option of a conserved gene cas- Antonella Lauri,1*† Thibaut Brunet,1* Mette Handberg-Thorsager,1,2‡ sette, because this would require either that this Antje H.L. Fischer,1§ Oleg Simakov,1 Patrick R. H. Steinmetz,1‖ Raju Tomer,1,2¶ cassette was active elsewhere in the body (which Philipp J. Keller,2 Detlev Arendt1,3# is not the case) or that multiple identical inde- pendent events of co-option occurred (which is The origin of chordates has been debated for more than a century, with one key issue being unparsimonious). As in vertebrates, the meso- the emergence of the notochord. In vertebrates, the notochord develops by convergence dermal midline resembles the neuroectodermal and extension of the chordamesoderm, a population of midline cells of unique molecular midline, which expresses foxD, foxA, netrin, slit, identity. We identify a population of mesodermal cells in a developing invertebrate, the marine and noggin (figs. S6 and S7) but not brachyury or annelid Platynereis dumerilii, that converges and extends toward the midline and expresses a twist. However, unlike in chicken (10), the an- notochord-specific combination of genes.