A Functional Comparison of the Domestic Cat Bitter Receptors
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A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
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Supplementary Figure S1. Results of flow cytometry analysis, performed to estimate CD34 positivity, after immunomagnetic separation in two different experiments. As monoclonal antibody for labeling the sample, the fluorescein isothiocyanate (FITC)- conjugated mouse anti-human CD34 MoAb (Mylteni) was used. Briefly, cell samples were incubated in the presence of the indicated MoAbs, at the proper dilution, in PBS containing 5% FCS and 1% Fc receptor (FcR) blocking reagent (Miltenyi) for 30 min at 4 C. Cells were then washed twice, resuspended with PBS and analyzed by a Coulter Epics XL (Coulter Electronics Inc., Hialeah, FL, USA) flow cytometer. only use Non-commercial 1 Supplementary Table S1. Complete list of the datasets used in this study and their sources. GEO Total samples Geo selected GEO accession of used Platform Reference series in series samples samples GSM142565 GSM142566 GSM142567 GSM142568 GSE6146 HG-U133A 14 8 - GSM142569 GSM142571 GSM142572 GSM142574 GSM51391 GSM51392 GSE2666 HG-U133A 36 4 1 GSM51393 GSM51394 only GSM321583 GSE12803 HG-U133A 20 3 GSM321584 2 GSM321585 use Promyelocytes_1 Promyelocytes_2 Promyelocytes_3 Promyelocytes_4 HG-U133A 8 8 3 GSE64282 Promyelocytes_5 Promyelocytes_6 Promyelocytes_7 Promyelocytes_8 Non-commercial 2 Supplementary Table S2. Chromosomal regions up-regulated in CD34+ samples as identified by the LAP procedure with the two-class statistics coded in the PREDA R package and an FDR threshold of 0.5. Functional enrichment analysis has been performed using DAVID (http://david.abcc.ncifcrf.gov/) -
Involvement of Taste Receptors in the Effectiveness of Sublingual Immunotherapy
Allergology International 67 (2018) 421e424 Contents lists available at ScienceDirect Allergology International journal homepage: http://www.elsevier.com/locate/alit Letter to the Editor Involvement of taste receptors in the effectiveness of sublingual immunotherapy Dear Editor, RNA or DNA was damaged, 25 samples each in the HR and NR groups underwent microarray analyses. We identified 56 genes, Japanese cedar pollinosis (JCP) is a specific seasonal allergic dis- differentially expressed between the HR and NR patients, based ease which affects ~30% of the Japanese population, between on the log2 ratio of their averages (Fig. 1). Among these, 5 genes February and April, every year.1 Apart from a series of symptom- encoded taste receptors, 4 of which tended to increase in the HR reliever medications, allergen-specific immunotherapy (AIT) is group but not in the NR group, after SLIT. Consistently, the expres- þ one of the most effective treatments for JCP. After several years of sion of TAS2R13, 43 and 50 in CD4 T cells could be retrieved by relying on the application of subcutaneous immunotherapy (SCIT) BioGPS (http://biogps.org/)(Supplementary Figs. 1e3). Among with standardized Japanese cedar pollen extract (since the them, we confirmed the cell surface expression of TAS2R43 on þ 1960s), the use of sublingual immunotherapy (SLIT) was approved CD4 T cells (Supplementary Fig. 4). SLIT-induced increasing ten- in 2014.2 In addition to the numerous clinical and scientific evi- dency was also observed for several small nuclear RNAs and micro- dences pertaining to its effectiveness and safety on JCP including RNAs especially in the HR group. -
Supplementary Tables Supplemental Table S1: Comparison of the Coverage of Reference Panels Used for SNP Imputation. the Markers
Supplementary Tables Supplemental Table S1: Comparison of the coverage of reference panels used for SNP imputation. The markers on the Consortium on Asthma among African-ancestry Populations in the Americas (CAAPA) reference panel and Haplotype Reference Consortium (HRG) used to impute SNPs from our AA and CAU participants were compared to one thousand genomes (1kG) dataset. Loci information CAAPA vs 1kG HRC vs 1kG Total loci 45,639,158 90,558,388 Overlapping loci 24,880,301 49,826,569 Percent overlap 54.52% 55.02% 1kG-only loci 9,363,544 15,148,191 Ref-only loci 8,461,186 22,649,501 Supplemental Table S2: SNP imputation results. The total number of SNPs imputed for the AA and CAU participants either using the Michigan imputation server (Minimac) or Beagle. Targets prepared for: AA CAU Beagle 730,616 726,165 Minimac 698,343 660,733 Supplemental Table S3: Allele frequencies of TA2R38 SNPs by each ancestral group and time point. The rs number of each SNP, the location of SNP buy chromosome (CHR) and base pair position (POS) is provided along with the allele frequency (ALLELE:FREQ) for each SNP. Baseline 6-month Baseline 6-month AA (N = 297) AA (N = 234) CAU (N = 198) CAU (N = 151) SNP CHR POS ALLELE:FREQ ALLELE:FREQ ALLELE:FREQ ALLELE:FREQ rs10246939 7 141672604 T:0.49 C:0.51 T:0.50 C:0.50 T:0.54 C:0.46 T:0.54 C:0.46 rs1726866 7 141672705 G:0.68 A:0.32 G:0.68 A:0.32 G:0.46 A:0.54 G:0.46 A:0.54 rs713598 7 141673345 C:0.50 G:0.50 C:0.50 G:0.50 C:0.58 G:0.42 C:0.58 G:0.42 Supplemental Table S4: Linkage disequilibrium analysis of TAS2R38 SNPs at each time point of the intervention. -
(12) United States Patent (10) Patent No.: US 9,347,934 B2 Shekdar Et Al
USOO9347934B2 (12) United States Patent (10) Patent No.: US 9,347,934 B2 Shekdar et al. (45) Date of Patent: May 24, 2016 (54) ASSAYS FOR IDENTIFYING COMPOUNDS 2008, OO38739 A1 2/2008 Li et al. THAT MODULATE BITTERTASTE 2008/0167286 A1* 7/2008 Gopalakrishnan et al. ........................ 514,21016 (71) Applicants: CHROMOCELL CORPORATION, 2010/01298.33 A1* 5/2010 Brune et al. ................. 435/721 North Brunswick, NJ (US); KRAFT FOODS GROUP BRANDS LLC, FOREIGN PATENT DOCUMENTS Northfield, IL (US) CN 1341632 A 3, 2002 CN 101583717 A 11, 2009 (72) Inventors: Kambiz Shekdar, New York, NY (US); CN 101828.111 A 9, 2010 Purvi Manoj Shah, Bridgewater, NJ WO WO-0038536 A2 7, 2000 WO WO-2004O29087 4/2004 (US); Joseph Gunnet, Flemington, NJ WO WO-2006053771 A2 5, 2006 (US); Jane V. Leland, Wilmette, IL WO WO-2007002026 A2 1/2007 (US); Peter H. Brown, Glenview, IL WO WO-2008057470 5, 2008 (US); Louise Slade, Morris Plains, NJ WO WO-2008119.195 A1 10, 2008 (US) WO WO-20081191.96 10, 2008 WO WO-20081191.97 10, 2008 (73) Assignees: Chromocell Corporation, North W WSi. A2 1929 Brunswick, NJ (US); Kraft Foods WO WO-2010O886.33 8, 2010 Group Brands LLC, Northfield, IL WO WO-2010O99983 A1 9, 2010 (US) WO WO-2013022947 2, 2013 (*) Notice: Subject to any disclaimer, the term of this OTHER PUBLICATIONS patent is extended or adjusted under 35 U.S.C. 154(b) by 0 days. Bachmanov et al., Taste Receptor Genes, 2007, 27:389-414.* Behrens et al., Structural Requirements for Bitter Taste Receptor (21) Appl. -
Modulation of Food Intake by Differential TAS2R Stimulation In
nutrients Article Modulation of Food Intake by Differential TAS2R Stimulation in Rat Carme Grau-Bové 1, Alba Miguéns-Gómez 1 , Carlos González-Quilen 1 , José-Antonio Fernández-López 2,3 , Xavier Remesar 2,3 , Cristina Torres-Fuentes 4 , Javier Ávila-Román 4 , Esther Rodríguez-Gallego 1, Raúl Beltrán-Debón 1 , M Teresa Blay 1 , Ximena Terra 1 , Anna Ardévol 1,* and Montserrat Pinent 1 1 MoBioFood Research Group, Department of Biochemistry and Biotechnology, Universitat Rovira i Virgili, 43007 Tarragona, Spain; [email protected] (C.G.-B.); [email protected] (A.M.-G.); [email protected] (C.G.-Q.); [email protected] (E.R.-G.); [email protected] (R.B.-D.); [email protected] (M.T.B.); [email protected] (X.T.); [email protected] (M.P.) 2 Department of Biochemistry and Molecular Biomedicine, Faculty of Biology, University of Barcelona, Av. Diagonal 643, 08028 Barcelona, Spain; [email protected] (J.-A.F.-L.); [email protected] (X.R.) 3 CIBER Obesity and Nutrition, Institute of Health Carlos III, Av. Diagonal 643, 08028 Barcelona, Spain 4 Nutrigenomics Research Group, Department of Biochemistry and Biotechnology, Universitat Rovira i Virgili, 43007 Tarragona, Spain; [email protected] (C.T.-F.); [email protected] (J.Á.-R.) * Correspondence: [email protected]; Tel.: +34-977-559-566 Received: 31 October 2020; Accepted: 4 December 2020; Published: 10 December 2020 Abstract: Metabolic surgery modulates the enterohormone profile, which leads, among other effects, to changes in food intake. Bitter taste receptors (TAS2Rs) have been identified in the gastrointestinal tract and specific stimulation of these has been linked to the control of ghrelin secretion. -
G Protein-Coupled Receptors
S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2015/16: G protein-coupled receptors. British Journal of Pharmacology (2015) 172, 5744–5869 THE CONCISE GUIDE TO PHARMACOLOGY 2015/16: G protein-coupled receptors Stephen PH Alexander1, Anthony P Davenport2, Eamonn Kelly3, Neil Marrion3, John A Peters4, Helen E Benson5, Elena Faccenda5, Adam J Pawson5, Joanna L Sharman5, Christopher Southan5, Jamie A Davies5 and CGTP Collaborators 1School of Biomedical Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK, 2Clinical Pharmacology Unit, University of Cambridge, Cambridge, CB2 0QQ, UK, 3School of Physiology and Pharmacology, University of Bristol, Bristol, BS8 1TD, UK, 4Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK, 5Centre for Integrative Physiology, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2015/16 provides concise overviews of the key properties of over 1750 human drug targets with their pharmacology, plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. The full contents can be found at http://onlinelibrary.wiley.com/doi/ 10.1111/bph.13348/full. G protein-coupled receptors are one of the eight major pharmacological targets into which the Guide is divided, with the others being: ligand-gated ion channels, voltage-gated ion channels, other ion channels, nuclear hormone receptors, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. -
G Protein‐Coupled Receptors
S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2019/20: G protein-coupled receptors. British Journal of Pharmacology (2019) 176, S21–S141 THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: G protein-coupled receptors Stephen PH Alexander1 , Arthur Christopoulos2 , Anthony P Davenport3 , Eamonn Kelly4, Alistair Mathie5 , John A Peters6 , Emma L Veale5 ,JaneFArmstrong7 , Elena Faccenda7 ,SimonDHarding7 ,AdamJPawson7 , Joanna L Sharman7 , Christopher Southan7 , Jamie A Davies7 and CGTP Collaborators 1School of Life Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK 2Monash Institute of Pharmaceutical Sciences and Department of Pharmacology, Monash University, Parkville, Victoria 3052, Australia 3Clinical Pharmacology Unit, University of Cambridge, Cambridge, CB2 0QQ, UK 4School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, BS8 1TD, UK 5Medway School of Pharmacy, The Universities of Greenwich and Kent at Medway, Anson Building, Central Avenue, Chatham Maritime, Chatham, Kent, ME4 4TB, UK 6Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK 7Centre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2019/20 is the fourth in this series of biennial publications. The Concise Guide provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to the open access knowledgebase source of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. -
Methods to Identify Tas2r Modulators Verfahren Zur Identifizierung Von Tas2r Modulatoren Procédé D’Identification De Modulateurs Tas2r
(19) TZZ _¥¥ _T (11) EP 2 137 322 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: C12Q 1/68 (2006.01) A23L 2/52 (2006.01) 27.02.2013 Bulletin 2013/09 A23G 4/00 (2006.01) C07C 53/134 (2006.01) (21) Application number: 08714784.9 (86) International application number: PCT/CH2008/000134 (22) Date of filing: 27.03.2008 (87) International publication number: WO 2008/119195 (09.10.2008 Gazette 2008/41) (54) METHODS TO IDENTIFY TAS2R MODULATORS VERFAHREN ZUR IDENTIFIZIERUNG VON TAS2R MODULATOREN PROCÉDÉ D’IDENTIFICATION DE MODULATEURS TAS2R (84) Designated Contracting States: • BEHRENS MAIK ET AL: "Members of RTP and AT BE BG CH CY CZ DE DK EE ES FI FR GB GR REEP gene families influence functional bitter HR HU IE IS IT LI LT LU LV MC MT NL NO PL PT taste receptor expression" JOURNAL OF RO SE SI SK TR BIOLOGICAL CHEMISTRY, vol. 281, no. 29, July 2006(2006-07), pages 20650-20659, XP002494217 (30) Priority: 30.03.2007 US 909143 P ISSN: 0021-9258 30.07.2007 US 962549 P • KUHN CHRISTINA ET AL: "Bitter taste receptors for saccharin and acesulfame K" JOURNAL OF (43) Date of publication of application: NEUROSCIENCE, vol. 24, no. 45, 10 November 30.12.2009 Bulletin 2009/53 2004 (2004-11-10), pages 10260-10265, XP002494218 ISSN: 0270-6474 (73) Proprietor: Givaudan SA • BUFE BERND ET AL: "The human TAS2R16 1214 Vernier (CH) receptor mediates bitter taste in response to beta- glucopyranosides" NATURE GENETICS, (72) Inventors: NATURE PUBLISHING GROUP, NEW YORK, US, • BRUNE, Nicole, Erna, Irene vol. -
Bivariate Genome-Wide Association Analysis Strengthens the Role of Bitter Receptor Clusters on Chromosomes 7 and 12 in Human Bitter Taste
bioRxiv preprint doi: https://doi.org/10.1101/296269; this version posted April 6, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste Liang-Dar Hwang1,2,3,4, Puya Gharahkhani1, Paul A. S. Breslin5,6, Scott D. Gordon1, Gu Zhu1, Nicholas G. Martin1, Danielle R. Reed5, and Margaret J. Wright2,7 1 QIMR Berghofer Medical Research Institute, Herston, Queensland 4006, Australia 2 Queensland Brain Institute, University of Queensland, St Lucia, Queensland 4072, Australia 3 Faculty of Medicine, University of Queensland, Herston, Queensland 4006, Australia 4 University of Queensland Diamantina Institute, University of Queensland, Translational Research Institute, Woolloongabba, Queensland 4102, Australia 5 Monell Chemical Senses Center, Philadelphia, Pennsylvania 19104, USA 6 Department of Nutritional Sciences, School of Environmental and Biological Sciences, Rutgers University, New Brunswick NJ, 08901 USA 7 Centre for Advanced Imaging, University of Queensland, St Lucia, Queensland 4072, Australia Correspondence to be sent to: Liang-Dar Hwang University of Queensland Diamantina Institute Wolloongabba QLD 4102, Australia Email: [email protected] Telephone: +61 7 3443 7976 Fax: +61 7 3443 6966 1 bioRxiv preprint doi: https://doi.org/10.1101/296269; this version posted April 6, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Prostaglandin E2 As Mediator and Modulator of Airway Smooth Muscle Responses
Institute of Environmental Medicine Division of Physiology The Unit for Experimental Asthma and Allergy Research Karolinska Institutet, Stockholm, Sweden PROSTAGLANDIN E2 AS MEDIATOR AND MODULATOR OF AIRWAY SMOOTH MUSCLE RESPONSES Jesper Säfholm Stockholm 2013 All published papers were reproduced with permission from the publisher. Published by Karolinska Institutet. Printed by Repro Print AB © Jesper Säfholm, 2013 ISBN 978-91-7549-167-7 Printed by 2013 Gårdsvägen 4, 169 70 Solna To boldly go where a lot of people have gone before ABSTRACT Prostaglandin E2 (PGE2) is a lipid mediator produced by virtually every cell of the human body. Because common non-steroidal anti-inflammatory drugs (NSAIDs) inhibit its biosynthesis, PGE2 is usually considered to be a ‘pro-inflammatory’ mediator. The role of PGE2 in the lung and airways has however always been unclear. In particular, the airway responses caused by activation of its four different EP receptors have been debated. Research on the mechanisms involved in the actions of PGE2 has previously been limited by the low potency and selectivity of available pharmacological tools. Recently, a number of potent receptor antagonists and enzyme inhibitors have become available. The aim of this thesis was therefore to characterise airway responses to PGE2 in greater detail, focusing on the role of its receptors on baseline smooth muscle function and during antigen-induced contractions. Alongside investigating PGE2 responses, the newly discovered relaxant effects of bitter tasting substances acting at their respective receptors (TAS2Rs) were examined. The project mainly involved analysis of isometric contractions and relaxations in isolated airways from guinea pigs and humans in organ baths. -
Alissa L. Allen1, John E. Mcgeary2, and John E. Hayes1
Bitterness of the non-nutritive sweetener Acesulfame Potassium varies with polymorphisms in TAS2R9, TAS2R31 and TAS2R38. Alissa L. Allen1, John E. McGeary2, and John E. Hayes1 1 Department of Food Science, College of Agricultural Sciences, The Pennsylvania State University, University Park, PA. 2 Providence Veterans Affairs Medical Center, Providence, RI Background Results Finding 4: Aggregate Genetic Bitterness Score predicts • Sweetness is innately liked by humans (reviewed by (Steiner, Glaser et al. Finding 1: Variation in the TAS2R9 Val187Ala allele the bitterness of AceK 2001)), even prior to birth (Snoo 1937). Many highly liked foods contain high predicts AceK bitterness endogenous amounts of natural sugars, or have sugars or other sweeteners added during processing. However, due to health risks such as cardiovascular disease, diabetes and obesity (Hill and Prentice 1995; Howard and Wylie- Rosett 2002), there has been a demand for reduced added-sugar in foods. To retain desired levels of sweetness while reducing calories, bulk carbohydrates are often replaced with non-nutritive sweeteners. • Acesulfame potassium (AceK) was approved by the US Food and Drug Administration for use in dry foods in 1994; approval as a general-purpose sweetener followed in 2002. However, in addition to eliciting sweet sensations, many non-nutritive sweeteners also have objectionable side tastes, such as bitterness, that are experienced by some individuals but not others. Thus, better understanding of the mechanisms underlying this variability may facilitate improved product formulation, with the potential to substantially impact health and wellness. Figure 4: Correlation between Perceived Bitterness of AceK and the Aggregate • Numerous studies have demonstrated that the perception of bitter taste in Figure 1: Effect of TAS2R9 polymorphisms on the bitterness and sweetness of AceK and bitterness of PROP.