Table S4. RAE Analysis of Dedifferentiated Liposarcoma

Table S4. RAE analysis of dedifferentiated liposarcoma

Model Chromosome Region start Region end Size q value freqX0* # genes genes Amp 1 57809872 60413476 2603605 0.00026 34.6 10 DAB1,RPS26P15,OMA1,TACSTD2,MYSM1,JUN,FGGY,HOOK1,CYP2J2,C1orf87 Amp 1 158619146 158696968 77823 0.053 25 1 VANGL2 Amp 1 158883523 158922841 39319 0.081 23.1 2 SLAMF1,CD48 Amp 1 162042586 162118557 75972 0.072 25 0 [Nearest:NUF2] Amp 1 162272460 162767627 495168 0.017 26.9 0 [Nearest:PBX1] Amp 1 165486554 165532374 45821 0.057 25 1 POU2F1 Amp 1 167138282 167483267 344986 0.024 26.9 2 ATP1B1,NME7 Amp 1 167612872 167708844 95973 0.041 25 3 BLZF1,C1orf114,SLC19A2 Amp 1 167728199 167808161 79963 0.076 21.2 1 F5 Amp 1 168436370 169233893 797524 0.018 26.9 3 GORAB,PRRX1,C1orf129 Amp 1 169462231 170768440 1306210 1.3E-06 38.5 10 FMO1,FMO4,TOP1P1,BAT2D1,MYOC,VAMP4,METTL13,DNM3,C1orf105,PIGC Amp 1 171026247 171291427 265181 0.015 26.9 1 TNFSF18 Del 1 201860394 202299299 438906 0.0047 25 6 ATP2B4,SNORA77,LAX1,ZC3H11A,SNRPE,C1orf157 Del 1 210909187 212021116 1111930 0.017 19.2 8 BATF3,NSL1,TATDN3,C1orf227,FLVCR1,VASH2,ANGEL2,RPS6KC1 Del 1 215937857 216049214 111358 0.079 23.1 1 SPATA17 Del 1 218237257 218367476 130220 0.0063 26.9 3 EPRS,BPNT1,IARS2 Del 1 222100886 222727238 626353 5.2E-05 32.7 5 FBXO28,DEGS1,NVL,CNIH4,WDR26 Del 1 223166548 224519805 1353258 0.0063 26.9 15 DNAH14,LBR,ENAH,SRP9,EPHX1,TMEM63A,LEFTY1,PYCR2,LEFTY2,C1orf55,H3F3A,LOC440926 ,ACBD3,MIXL1,LIN9 Del 1 225283136 225374166 91031 0.054 23.1 1 CDC42BPA Del 1 227278990 229012661 1733672 0.091 21.2 13 RAB4A,SPHAR,C1orf96,ACTA1,NUP133,ABCB10,TAF5L,URB2,GALNT2,PGBD5,COG2,AGT,CAP Del 1 229602259 229673038 70780 0.020 25 1 EGLN1N9 Del 1 233309013 234365436 1056424 0.0014 28.8 10 TOMM20,SNORA14B,RBM34,ARID4B,GGPS1,TBCE,B3GALNT2,GNG4,LYST,NID1 Del 1 234407392 234755921 348530 0.048 23.1 4 GPR137B,ERO1LB,EDARADD,LGALS8 Del 1 239674808 240239705 564898 0.039 23.1 7 FH,KMO,OPN3,CHML,WDR64,EXO1,MAP1LC3C Del 1 240760677 247185356 6424680 8.3E-05 44.2 72 CEP170,SDCCAG8,AKT3,ZNF238,C1orf100,ADSS,C1orf101,PPPDE1,FAM36A,HNRNPU,EFCAB2, KIF26B,SMYD3,TFB2M,C1orf71,SCCPDH,AHCTF1,ZNF695,ZNF670,ZNF669,FLJ45717,ZNF124,V N1R5,ZNF496,NLRP3,OR2B11,OR2W5,OR2C3,C1orf150,OR2G2,OR2G3,OR6F1,OR1C1,OR14A1 6,OR11L1,TRIM58,OR2W3,OR2T8,OR2L13,OR2L8,OR2AK2,OR2L1P,OR2L2,OR2L3,OR2M1P,OR 2M5,OR2M2,OR2M3,OR2M4,OR2T33,OR2T12,OR2M7,OR14C36,OR2T4,OR2T6,OR2T1,OR2T2 ,OR2T3,OR2T5,OR2G6,OR2T29,OR2T34,OR2T10,OR2T11,OR2T35,OR2T27,OR14I1,LOC646627 Del 2 241844891 242579492 734602 0.038 28.8 10 HDLBP,2-Sep,FARP2,STK25,BOK,ING5,GAL3ST2,NEU4,PDCD1,C2orf85,SH3BP5L,ZNF672,ZNF692,PGBD2 Del 3 10016504 10254819 238316 0.028 23.1 7 LOC401052,CIDECP,FANCD2,C3orf24,C3orf10,VHL,IRAK2 Del 3 12604063 12680013 75951 0.083 21.2 1 RAF1 Del 3 41806019 41852414 46396 0.083 19.2 1 ULK4 Del 3 47039911 53977519 6937609 4.0E-07 38.5 150 SETD2,KIF9,KLHL18,PTPN23,SCAP,C3orf75,CSPG5,SMARCC1,DHX30,MAP4,CDC25A,CAMP,ZNF 589,NME6,SPINK8,FBXW12,PLXNB1,CCDC51,CCDC72,ATRIP,TREX1,SHISA5,PFKFB4,UCN2,COL 7A1,UQCRC1,TMEM89,SLC26A6,CELSR3,NCKIPSD,IP6K2,PRKAR2A,SLC25A20,C3orf71,ARIH2,P 4HTM,WDR6,DALRD3,NDUFAF3,IMPDH2,QRICH1,QARS,USP19,LAMB2,LAMB2L,CCDC71,KLH DC8B,LOC646498,CCDC36,C3orf62,USP4,GPX1,RHOA,TCTA,AMT,NICN1,DAG1,BSN,APEH,MST 1,RNF123,AMIGO3,GMPPB,IP6K1,CDH29,C3orf54,UBA7,TRAIP,CAMKV,MST1R,MON1A,RBM6 ,RBM5,SEMA3F,GNAT1,SLC38A3,GNAI2,SEMA3B,C3orf45,IFRD2,HYAL3,NAT6,HYAL1,HYAL2,T USC2,RASSF1,ZMYND10,TUSC4,CYB561D2,TMEM115,CACNA2D2,C3orf18,HEMK1,CISH,MAPK APK3,DOCK3,ARMET,RBM15B,VPRBP,RAD54L2,TEX264,GRM2,IQCF3,IQCF2,IQCF1,RRP9,PARP 3,GPR62,PCBP4,ABHD14B,ABHD14A,ACY1,RPL29,DUSP7,WDR51A,ALAS1,TLR9,TWF2,PPM1M ,WDR82,GLYCTK,DNAH1,BAP1,PHF7,SEMA3G,TNNC1,NISCH,STAB1,NT5DC2,LOC440957,PBR M1,GNL3,GLT8D1,SPCS1,NEK4,ITIH1,ITIH3,ITIH4,MUSTN1,TMEM110,SFMBT1,RFT1,PRKCD,TK Del 3 56229193 58360129 2130937 0.00037 28.8 19 ERC2,CCDC66,C3orf63,ARHGEF3,SPATA12,IL17RD,HESX1,APPL1,ASB14,DNAH12,PDE12,ARF4, FAM116A,SLMAP,FLNB,DNASE1L3,ABHD6,RPP14,PXK Del 3 69268931 69400527 131597 0.044 23.1 1 FRMD4B Del 3 72657187 73277953 620767 0.022 25 4 SHQ1,GLT8D4,PPP4R2,FLJ10213 Del 3 110414130 110683868 269739 0.088 21.2 2 DPPA2,DPPA4 Del 3 139908783 140149821 241039 0.024 23.1 3 PIK3CB,FOXL2,C3orf72 Del 3 171328741 171590705 261965 0.020 23.1 3 PHC3,PRKCI,SKIL Del 3 196481383 199329592 2848210 1.1E-06 51.9 37 ACAP2,PPP1R2,APOD,SDHALP2,MUC20,MUC4,TNK2,SDHALP1,TFRC,ZDHHC19,OSTalpha,PCYT 1A,TCTEX1D2,TM4SF19,UBXN7,RNF168,C3orf43,WDR53,FBXO45,LRRC33,C3orf34,PIGX,PAK2, SENP5,NCBP2,PIGZ,MFI2,DLG1,BDH1,LOC220729,KIAA0226,FYTTD1,LRCH3,IQCG,RPL35A,LML Del 4 39682282 39820681 138400 0.052 23.1 1 N4BP2 Amp 5 1093705 1543862 450158 0.0020 30.8 7 SLC12A7,SLC6A19,SLC6A18,TERT,CLPTM1L,SLC6A3,LPCAT1 Amp 5 1697394 1789892 92499 0.065 25 0 [Nearest:LOC728613] Amp 5 13319637 13466970 147334 0.054 26.9 0 [Nearest:DNAH5] Amp 5 13620666 13737186 116521 0.043 26.9 0 [Nearest:DNAH5] Amp 5 15649221 15660073 10853 0.054 25 1 FBXL7 Amp 5 24058033 24297675 239643 0.038 26.9 0 [Nearest:CDH10] Amp 5 24480832 24582277 101446 0.075 23.1 1 CDH10 Amp 5 25201868 25258652 56785 0.087 23.1 0 [Nearest:CDH10] Amp 5 25986189 26103823 117635 0.079 23.1 0 [Nearest:CDH9] Amp 6 103477930 103845083 367154 0.087 25 0 [Nearest:GRIK2] Amp 6 113439154 117189663 3750510 0.0054 30.8 17 MARCKS,HDAC2,HS3ST5,FRK,NT5DC1,COL10A1,TSPYL4,TSPYL1,DSE,FAM26F,FAM26E,FAM26 D,RWDD1,RSPH4A,ZUFSP,KPNA5,FAM162B Amp 6 117302727 117338857 36131 0.083 23.1 1 RFX6 Amp 6 117388338 117692206 303869 0.081 25 0 [Nearest:VGLL2] Amp 6 128176607 128529036 352430 0.061 26.9 2 C6orf190,PTPRK Amp 6 128878261 129057937 179677 0.078 25 1 PTPRK Amp 6 134681434 145160649 10479216 0.00018 38.5 42 ALDH8A1,HBS1L,MYB,AHI1,PDE7B,FAM54A,BCLAF1,MAP7,MAP3K5,PEX7,SLC35D3,IL20RA,IL2 2RA2,IFNGR1,OLIG3,TNFAIP3,PERP,KIAA1244,PBOV1,HEBP2,CCDC28A,ECT2L,REPS1,C6orf115 ,HECA,TXLNB,CITED2,NMBR,VTA1,GPR126,HIVEP2,AIG1,ADAT2,PEX3,FUCA2,PHACTR2,LTV1,P LAGL1,HYMAI,SF3B5,STX11,UTRN Amp 6 145988967 146457034 468068 0.029 25 4 EPM2A,FBXO30,SHPRH,GRM1 Amp 6 146998782 147048234 49453 0.036 25 1 C6orf103 Amp 6 147282904 149969228 2686325 0.00049 34.6 10 STXBP5,SAMD5,SASH1,UST,MAP3K7IP2,SUMO4,ZC3H12D,PPIL4,C6orf72,KATNA1 Amp 7 13538028 13699329 161302 0.095 23.1 0 [Nearest:ETV1] Amp 7 16772441 16801091 28651 0.090 25 2 TSPAN13,AGR2 Amp 7 25253943 25955523 701581 0.025 28.8 0 [Nearest:NPVF] Amp 7 27099126 27240566 141441 0.00031 36.5 12 HOXA1,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,HOXA10,HOXA11,HOXA11AS,H Amp 7 29519225 31543483 2024259 0.088 25 20 CHN2,PRR15,WIPF3,SCRN1,FKBP14,PLEKHA8,C7orf41,ZNRF2,DKFZP586I1420,NOD1,GGCT,GAOXA13 RS,CRHR2,INMT,C7orf67,AQP1,GHRHR,ADCYAP1R1,NEUROD6,CCDC129 Del 7 75205238 75309970 104733 0.049 23.1 3 HIP1,CCL26,CCL24 Amp 7 141720324 142192030 471707 1.1E-06 42.3 3 PRSS1,TRY6,PRSS2 Amp 8 99393649 99532186 138538 0.048 26.9 1 KCNS2 Del 8 145909942 146264846 354905 0.016 23.1 10 ZNF251,ZNF34,RPL8,ZNF517,ZNF7,COMMD5,ZNF250,ZNF16,TMED10P,C8orf33 Del 9 194193 16047005 15852813 0.0077 32.7 51 C9orf66,DOCK8,KANK1,DMRT1,DMRT3,DMRT2,SMARCA2,FLJ35024,VLDLR,KCNV2,KIAA0020, RFX3,GLIS3,SLC1A1,C9orf68,PPAPDC2,CDC37L1,AK3,RCL1,JAK2,INSL6,INSL4,RLN2,RLN1,C9orf 46,CD274,PDCD1LG2,KIAA1432,ERMP1,MLANA,KIAA2026,RANBP6,IL33,TPD52L3,UHRF2,GLD C,JMJD2C,C9orf123,PTPRD,TYRP1,C9orf150,MPDZ,NFIB,ZDHHC21,CER1,FREM1,LOC389705,T Del 9 16455531 23807986 7352456 1.5E-08 42.3 39 BNC2,CNTLN,SH3GL2,ADAMTSL1,FAM154A,RRAGA,FAM29A,SCARNA8,ADFP,DENND4C,RPS6, ACER2,SLC24A2,MLLT3,KIAA1797,PTPLAD2,IFNB1,IFNW1,IFNA21,IFNA4,IFNA7,IFNA10,IFNA1 6,IFNA17,IFNA14,IFNA5,KLHL9,IFNA6,IFNA13,IFNA2,IFNA8,IFNA1,IFNE,MTAP,CDKN2A,CDKN2 BAS,CDKN2B,DMRTA1,ELAVL2 Del 9 24053497 25573028 1519532 0.030 23.1 0 [Nearest:TUSC1] Del 9 26736903 31829311 5092409 0.017 26.9 10 C9orf82,PLAA,IFT74,LRRC19,TEK,C9orf11,MOBKL2B,IFNK,C9orf72,LINGO2 Del 9 32375919 32490919 115001 0.051 23.1 2 ACO1,DDX58 Del 9 32803501 32894286 90786 0.052 23.1 0 [Nearest:TMEM215] Del 9 33803335 37898880 4095546 3.5E-06 36.5 73 UBE2R2,UBAP2,WDR40A,UBAP1,KIF24,NUDT2,KIAA1161,C9orf24,C9orf25,DNAI1,ENHO,CNTF R,C9orf23,DCTN3,ARID3C,SIGMAR1,GALT,IL11RA,CCL27,CCL19,CCL21,KIAA1045,DNAJB5,C9or f131,VCP,FANCG,PIGO,STOML2,KIAA1539,UNC13B,LOC158381,RUSC2,FAM166B,TESK1,CD72, SIT1,RMRP,CCDC107,C9orf100,CA9,TPM2,TLN1,CREB3,GBA2,RGP1,MSMP,NPR2,SPAG8,HINT 2,C9orf128,C9orf127,OR13J1,HRCT1,OR2S2,RECK,GLIPR2,CCIN,CLTA,GNE,RNF38,MELK,PAX5, ZCCHC7,GRHPR,ZBTB5,POLR1E,FBXO10,TOMM5,FRMPD1,RG9MTD3,EXOSC3,WDR32,MCART Del 9 38435900 43530076 5094177 0.081 28.8 10 CNTNAP3,FAM75A2,FAM75A1,FAM75A3,FAM74A3,ZNF658,LOC653501,ZNF658B,KGFLP2,AN Amp 9 71552270 71888549 336280 0.098 25 3 PTAR1,C9orf135,MAMDC2 Amp 9 84329796 84853118 523323 0.045 26.9 1 RASEF Amp 9 85635121 85718742 83622 0.083 25 1 KIF27 Amp 9 85901224 87149173 1247950 0.041 26.9 2 SLC28A3,NTRK2 Amp 9 90182693 93177300 2994608 0.0057 28.8 13 SPIN1,NXNL2,LOC286238,C9orf47,S1PR3,SHC3,CKS2,SECISBP2,SEMA4D,GADD45G,DIRAS2,SY Amp 9 93564711 98074124 4509414 0.013 30.8 34 ROR2,SPTLC1,LOC100128076,IARS,NOL8,CENPP,OGN,OMD,ASPN,ECM2,IPPK,BICD2,ZNF484,F GD3,SUSD3,C9orf89,NINJ1,WNK2,C9orf129,FAM120AOS,FAM120A,PHF2,BARX1,PTPDC1,ZNF 169,FAM22F,HIATL1,FBP2,FBP1,C9orf3,FANCC,PTCH1,C9orf102,HSD17B3 Amp 9 99075283 99262711 187429 0.040 26.9 2 KIAA1529,TDRD7 Amp 9 99393409 99647356 253948 0.047 26.9 4 TMOD1,C9orf97,NCBP1,XPA Amp 9 100100965 100238966 138002 0.051 26.9 1 GABBR2 Amp 9 100353031 102993750 2640720 0.017 28.8 16 GABBR2,ANKS6,GALNT12,COL15A1,TGFBR1,ALG2,SEC61B,NR4A3,STX17,ERP44,INVS,TEX10,C 9orf30,TMEFF1,MURC,RP11-35N6.1 Amp 9 103099517 103151635 52119 0.047 26.9 1 RP11-35N6.1 Amp 9 103837411 106370277 2532867 0.014 30.8 5 CYLC2,SMC2,OR13F1,OR13C4,OR13C3 Amp 9 106469528 106935102 465575 0.075 26.9 4 OR13D1,NIPSNAP3A,NIPSNAP3B,ABCA1 Amp 9 109269559 109307305 37747 0.096 25 1 KLF4 Amp 9 111533532 111568663 35132 0.040 26.9 1 PALM2 Amp 9 113101568 113178770 77203 0.037 26.9 2 OR2K2,KIAA0368 Amp 9 113914836 113928215 13380 0.038 26.9 1 SUSD1 Amp 9 115301638 115416667 115030 0.051 28.8 1 RGS3 Amp 9 115491314 116375322 884009 0.011 28.8 8 ZNF618,AMBP,KIF12,COL27A1,ORM1,ORM2,AKNA,DFNB31 Amp 9 116758385 119542232 2783848 0.0092 26.9 7 TNC,1-Dec,PAPPA,ASTN2,TRIM32,SNORA70C,TLR4 Amp 9 122070128 122213429 143302 0.054 25 1 CDK5RAP2 Amp 9 123449399 123712516 263118 0.045 25 1 DAB2IP Amp 9 129980575 130203429 222855 0.036 25 8 CIZ1,DNM1,GOLGA2,C9orf119,TRUB2,COQ4,SLC27A4,URM1 Del 10 126361 1394157 1267797 0.00014 28.8 9 ZMYND11,DIP2C,LARP5,GTPBP4,IDI2,IDI1,WDR37,C10orf139,ADARB2 Del 10 12202828 12320447 117620 0.078 21.2 4 DHTKD1,SEC61A2,NUDT5,CDC123 Del 10 12401905 12496241 94337 0.099 19.2 1 CAMK1D Del 10 135202362 135271770 69409 0.0017 11.5 2 CYP2E1,SYCE1 Del 10 135202362 135271770 69409 0.0017 11.5 2 CYP2E1,SYCE1 Del 11 200300 2048826 1848527 0.00029 28.8 62 RIC8A,SIRT3,PSMD13,NLRP6,ATHL1,IFITM5,IFITM2,IFITM1,IFITM3,B4GALNT4,PKP3,SIGIRR,AN O9,PTDSS2,RNH1,HRAS,LRRC56,C11orf35,RASSF7,PHRF1,IRF7,MUPCDH,SCT,DRD4,DEAF1,TM EM80,EPS8L2,TALDO1,PDDC1,CEND1,SLC25A22,LRDD,RPLP2,SNORA52,PNPLA2,EFCAB4A,CD 151,POLR2L,TSPAN4,CHID1,AP2A2,MUC6,MUC2,MUC5B,TOLLIP,BRSK2,HCCA2,DUSP8,LOC33 8651,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5- Del 11 3648961 3896833 247873 0.016 25 5 CHRNA10,NUP98,FRAG1,RHOG,STIM16,CTSD,SYT8,TNNI2,LSP1,TNNT3,MRPL23,H19 Del 11 8474353 10284567 1810215 0.00029 28.8 20 STK33,RPL27A,SNORA3,SNORA45,ST5,C11orf17,C11orf16,ASCL3,TMEM9B,NRIP3,SCUBE2,DE NND5A,TMEM41B,IPO7,SNORA23,ZNF143,WEE1,SWAP70,SBF2,ADM Del 11 14301090 14416580 115491 0.063 21.2 1 RRAS2 Del 11 16041764 16128647 86884 0.071 23.1 1 SOX6 Del 11 16995671 17335733 340063 0.0088 26.9 3 RPS13,PIK3C2A,NUCB2 Del 11 18265986 18536332 270347 0.079 23.1 7 HPS5,GTF2H1,LDHA,LDHC,LDHAL6A,TSG101,UEVLD Del 11 46717553 47971115 1253563 0.00042 30.8 26 F2,CKAP5,SNORD67,LRP4,C11orf49,ARFGAP2,PACSIN3,DDB2,ACP2,NR1H3,MADD,MYBPC3,SP I1,SLC39A13,PSMC3,RAPSN,CUGBP1,PTPMT1,KBTBD4,NDUFS3,C1QTNF4,MTCH2,AGBL2,FNB Del 11 61495233 63632006 2136774 0.028 23.1 66 INCENP,SCGB1D1,SCGB2A1,SCGB1D2,SCGB2A2,SCGB1D4,ASRGL1,SCGB1A1,AHNAK,EEF1G,T UT1,MTA2,EML3,ROM1,B3GAT3,GANAB,INTS5,C11orf48,METTL12,SNORA57,C11orf83,UBXN 1,LRRN4CL,BSCL2,GNG3,HNRNPUL2,TTC9C,ZBTB3,POLR2G,TAF6L,TMEM179B,TMEM223,NXF 1,STX5,WDR74,SNHG1,SNORD22,SNORD31,SNORD30,SNORD29,SNORD28,SNORD27,SNORD 26,SNORD25,SLC3A2,CHRM1,SLC22A6,SLC22A8,SLC22A25,SLC22A10,SLC22A9,HRASLS5,LGAL S12,RARRES3,HRASLS2,PLA2G16,ATL3,RTN3,C11orf84,MARK2,RCOR2,NAT11,COX8A,OTUB1, Del 11 64464677 65103995 639319 0.035 23.1 29 C11orf85,BATF2,ARL2,SNX15,SAC3D1,NAALADL1,CDCA5,ZFPL1,C11orf2,TM7SF2,ZNHIT2,FAU,MACROD1,FLRT1 MRPL49,SYVN1,SPDYC,CAPN1,SLC22A20,POLA2,CDC42EP2,DPF2,TIGD3,SLC25A45,FRMD8,M ALAT1,SCYL1,LTBP3,SSSCA1,FAM89B,EHBP1L1 Del 11 65150478 65823707 673230 0.042 23.1 31 PCNXL3,SIPA1,RELA,KAT5,RNASEH2C,DKFZp761E198,OVOL1,SNX32,CFL1,MUS81,EFEMP2,CTS W,FIBP,CCDC85B,FOSL1,C11orf68,DRAP1,TSGA10IP,SART1,EIF1AD,BANF1,CST6,CATSPER1,GA L3ST3,SF3B2,PACS1,KLC2,RAB1B,CNIH2,YIF1A,TMEM151A Del 11 69711909 70212622 500714 0.015 25 5 ANO1,FADD,PPFIA1,CTTN,SHANK2 Del 11 70626984 70971958 344975 0.066 23.1 7 DHCR7,NADSYN1,KRTAP5-7,KRTAP5-8,KRTAP5-9,KRTAP5-10,KRTAP5-11 Del 11 72246042 72670917 424876 0.025 25 3 FCHSD2,P2RY2,P2RY6 Del 11 72832625 134432265 12135112 7.1E-13 50 94 C11orf63,BSX,HSPA8,ASAM,GRAMD1B,SCN3B,ZNF202,OR6X1,OR6M1,TMEM225,OR8D4,OR4 D5,OR6T1,OR10S1,OR10G4,OR10G9,OR10G8,OR10G7,VWA5A,OR8G2,OR8G1,OR8G5,OR8D1, OR8D2,OR8B2,OR8B3,OR8B4,OR8B8,OR8B12,OR8A1,PANX3,TBRG1,SIAE,SPA17,NRGN,VSIG2, ESAM,C11orf61,ROBO3,ROBO4,HEPN1,HEPACAM,CCDC15,SLC37A2,TMEM218,PKNOX2,FEZ1, EI24,STT3A,CHEK1,ACRV1,PATE1,PATE2,HYLS1,PUS3,DDX25,CDON,RPUSD4,FAM118B,SRPR,F OXRED1,TIRAP,DCPS,ST3GAL4,KIRREL3,ETS1,FLI1,KCNJ1,KCNJ5,C11orf45,TP53AIP1,RICS,BARX 2,TMEM45B,NFRKB,PRDM10,APLP2,ST14,ZBTB44,ADAMTS8,ADAMTS15,SNX19,NTM,OPCML, SPATA19,IGSF9B,JAM3,NCAPD3,VPS26B,THYN1,ACAD8,GLB1L3,GLB1L2,B3GAT1 Del 11 72832625 134432265 61599641 7.1E-13 53.8 400 Redacted for size Del 12 33854 1403768 1369915 3.4E-08 28.8 11 IQSEC3,SLC6A12,SLC6A13,JARID1A,CCDC77,B4GALNT3,NINJ2,WNK1,HSN2,RAD52,ERC1 Del 12 1527163 1821094 293932 0.030 23.1 5 FBXL14,WNT5B,ADIPOR2,CACNA2D4,LRTM2 Del 12 2795004 3176000 380997 0.067 19.2 7 ITFG2,NRIP2,FOXM1,C12orf32,TULP3,TEAD4,TSPAN9 Del 12 4515530 4783792 268263 0.049 21.2 6 C12orf4,RAD51AP1,DYRK4,AKAP3,NDUFA9,GALNT8 Del 12 4981395 5373091 391697 0.075 21.2 1 KCNA5 Del 12 6570979 6632386 61408 0.051 21.2 4 CHD4,LPAR5,ACRBP,ING4 Del 12 7477223 7969578 492356 0.074 26.9 9 CD163L1,CD163,APOBEC1,GDF3,DPPA3,CLEC4C,NANOG,SLC2A14,SLC2A3 Del 12 9288724 13019247 3730524 0.0028 30.8 62 KLRB1,LOC374443,CLEC2D,CLECL1,CD69,KLRF1,CLEC2B,CLEC12A,CLEC1B,CLEC12B,CLEC9A,CL EC1A,CLEC7A,OLR1,C12orf59,GABARAPL1,KLRD1,KLRK1,KLRC4,KLRC3,KLRC2,KLRC1,KLRA1,M AGOHB,STYK1,CSDA,TAS2R7,TAS2R8,TAS2R9,TAS2R10,PRR4,PRH1,TAS2R13,PRH2,TAS2R14,T AS2R50,TAS2R20,TAS2R19,TAS2R31,TAS2R46,TAS2R43,TAS2R30,TAS2R42,PRB3,PRB4,PRB1,P RB2,ETV6,BCL2L14,LRP6,MANSC1,LOH12CR1,DUSP16,CREBL2,GPR19,CDKN1B,APOLD1,DDX4 Del 12 13132206 13548078 415873 0.047 21.2 3 GSG1,EMP1,C12orf36 Del 12 14031977 14154405 122429 0.057 21.2 0 [Nearest:GRIN2B] Amp 12 46430255 46668387 238133 0.027 25 6 RAPGEF3,SLC48A1,HDAC7,VDR,TMEM106C,COL2A1 Amp 12 46743751 46755516 11766 0.095 21.2 1 SENP1 Del 12 55358163 55430890 72728 0.079 17.3 3 PTGES3,NACA,PRIM1 Amp 12 55893788 59774911 169946 9.3E-115 96.2 8 CDK4,9-Mar,CYP27B1,METTL1,FAM119B,TSFM,AVIL,CTDSP2 Amp 12 55893788 59774911 3881124 9.3E-115 98.1 33 NXPH4,SHMT2,NDUFA4L2,STAC3,R3HDM2,INHBC,INHBE,GLI1,ARHGAP9,MARS,DDIT3,MBD6, DCTN2,KIF5A,PIP4K2C,DTX3,GEFT,SLC26A10,B4GALNT1,OS9,AGAP2,TSPAN31,CDK4,9- Mar,CYP27B1,METTL1,FAM119B,TSFM,AVIL,CTDSP2,XRCC6BP1,LRIG3,SLC16A7 Amp 12 59925090 60853541 928452 1.9E-06 48.1 1 FAM19A2 Amp 12 60947503 60982821 35319 0.038 23.1 1 USP15 Amp 12 61178939 61251416 72478 0.0056 25 1 MON2 Amp 12 62175356 62494424 319069 0.058 28.8 2 DPY19L2,TMEM5 Amp 12 62615954 62656974 41021 0.025 23.1 1 SRGAP1 Amp 12 62718703 62807597 88895 0.012 25 1 SRGAP1 Del 12 62903318 62949520 46203 0.090 23.1 1 C12orf56 Amp 12 63438191 65890275 194434 2.0E-57 71.2 1 HMGA2 Amp 12 63438191 65890275 2452085 2.0E-57 84.6 10 GNS,WIF1,LEMD3,MSRB3,HMGA2,LLPH,TMBIM4,IRAK3,HELB,GRIP1 Amp 12 66057490 67290210 351492 4.3E-28 55.8 1 DYRK2 Amp 12 66057490 67290210 1232721 4.3E-28 75 5 DYRK2,IFNG,IL26,IL22,MDM1 Amp 12 67306482 74455232 47400 1.9E-119 98.1 2 MDM2,CPM Amp 12 67306482 74455232 282647 4.1E-94 92.3 5 FRS2,CCT2,LRRC10,BEST3,RAB3IP Amp 12 67306482 74455232 7148751 1.9E-119 98.1 33 RAP1B,hCG_1757335,NUP107,SLC35E3,MDM2,CPM,CPSF6,LYZ,YEATS4,FRS2,CCT2,LRRC10,BE ST3,RAB3IP,CNOT2,KCNMB4,PTPRB,PTPRR,TSPAN8,LGR5,ZFC3H1,THAP2,TMEM19,RAB21,TB C1D15,TPH2,TRHDE,KCNC2,CAPS2,GLIPR1L1,GLIPR1L2,GLIPR1,KRR1 Amp 12 74645526 74761694 116169 0.013 28.8 2 PHLDA1,NAP1L1 Amp 12 75110411 78214100 3103690 9.9E-11 80.8 7 BBS10,OSBPL8,ZDHHC17,CSRP2,E2F7,NAV3,SYT1 Amp 12 78576218 78606184 29967 0.098 19.2 1 PAWR Amp 12 79113501 79285543 172043 0.059 25 0 [Nearest:PPP1R12A] Amp 12 79832392 79852877 20486 0.091 21.2 1 LIN7A Amp 12 80069555 83113680 3044126 2.2E-12 69.2 5 ACSS3,PPFIA2,CCDC59,C12orf26,TMTC2 Amp 12 83339065 89687421 6348357 4.0E-10 82.7 16 SLC6A15,TSPAN19,LRRIQ1,ALX1,RASSF9,NTS,MGAT4C,C12orf50,C12orf29,CEP290,TMTC3,KIT LG,DUSP6,WDR51B,GALNT4,ATP2B1 Amp 12 89837264 89844083 6820 0.050 21.2 0 [Nearest:C12orf12] Amp 12 89934159 90026637 92479 0.018 26.9 2 KERA,LUM Amp 12 90063816 91658781 1594966 5.9E-06 55.8 5 DCN,BTG1,CLLU1OS,C12orf74,PLEKHG7 Amp 12 91879919 91974489 94571 0.011 25 0 [Nearest:EEA1] Amp 12 93865456 93898892 33437 0.044 25 1 NDUFA12 Amp 12 94002481 94091422 88942 0.019 26.9 1 FGD6 Amp 12 94524590 94555604 31015 0.050 23.1 0 [Nearest:NTN4] Amp 12 94606858 94619102 12245 0.076 23.1 1 NTN4 Amp 12 94665766 95701256 162783 6.7E-23 51.9 2 ELK3,PCTK2 Amp 12 94665766 95701256 1035491 6.7E-23 65.4 9 NTN4,SNRPF,CCDC38,AMDHD1,HAL,LTA4H,ELK3,PCTK2,C12orf63 Amp 12 96027612 96048518 20907 0.088 23.1 0 [Nearest:NEDD1] Amp 12 96129202 96380447 251246 0.017 28.8 0 [Nearest:NEDD1] Amp 12 97015685 97135864 120180 0.041 25 0 [Nearest:TMPO] Del 12 119720184 121478395 1758212 0.028 26.9 26 UNQ1887,HNF1A,C12orf43,OASL,P2RX7,P2RX4,CAMKK2,ANAPC5,RNF34,FBXL10,ORAI1,MOR N3,TMEM120B,RHOF,LOC338799,HPD,PSMD9,WDR66,BCL7A,MLXIP,LRRC43,IL31,B3GNT4,DI Del 12 122231630 122253097 21468 0.077 21.2 1 MPHOSPH9 Del 12 131912185 132289090 376906 0.0070 25 8 GOLGA3,CHFR,ZNF605,ZNF26,ZNF84,ZNF140,ZNF10,ZNF268 Del 13 18361637 24893858 6532222 5.0E-06 34.6 40 DKFZp686A1627,TUBA3C,TPTE2,MPHOSPH8,PSPC1,ZMYM5,ZMYM2,GJA3,GJB2,GJB6,CRYL1,I FT88,IL17D,N6AMT2,XPO4,LATS2,SAP18,C13orf3,MRP63,ZDHHC20,EFHA1,FGF9,SGCG,SACS,T NFRSF19,MIPEP,PCOTH,RP11- 45B20.2,SPATA13,C1QTNF9,PARP4,LOC374491,ATP12A,RNF17,CENPJ,PABPC3,FAM123A,MT MR6,NUPL1,ATP8A2 Del 13 24948838 26120629 1171792 0.048 23.1 5 ATP8A2,SHISA2,RNF6,CDK8,WASF3 Del 13 27138863 28313040 1174178 0.00030 30.8 11 POLR1D,GSX1,PDX1,ATP5EP2,CDX2,PRHOXNB,FLT3,PAN3,FLT1,POMP,SLC46A3 Del 13 29128099 79015668 49887570 7.0E-06 46.2 161 UBL3,KATNAL1,HMGB1,USPL1,ALOX5AP,C13orf33,C13orf26,HSPH1,B3GALTL,RXFP2,FRY,BRC A2,N4BP2L1,N4BP2L2,PDS5B,KL,STARD13,RFC3,NBEA,MAB21L1,DCLK1,SOHLH2,SPG20,CCNA 1,C13orf36,RFXAP,SMAD9,ALG5,EXOSC8,FAM48A,CSNK1A1L,POSTN,TRPC4,UFM1,FREM2,ST OML3,C13orf23,NHLRC3,LHFP,COG6,FOXO1,MRPS31,SLC25A15,SUGT1L1,ELF1,WBP4,KBTBD 6,KBTBD7,MTRF1,NARG1L,OR7E37P,C13orf15,KIAA0564,DGKH,AKAP11,TNFSF11,C13orf30,EP STI1,DNAJC15,ENOX1,CCDC122,C13orf31,SERP2,TSC22D1,NUFIP1,KIAA1704,GTF2F2,KCTD4,T PT1,SNORA31,SLC25A30,COG3,SPERT,SIAH3,ZC3H13,CPB2,LCP1,C13orf18,LRCH1,ESD,HTR2A, SUCLA2,NUDT15,MED4,ITM2B,RB1,P2RY5,RCBTB2,CYSLTR2,FNDC3A,MLNR,CDADC1,CAB39L, SETDB2,PHF11,RCBTB1,ARL11,EBPL,KPNA3,LOC220429,C13orf1,DLEU2,TRIM13,KCNRG,DLEU 1,FAM10A4,DLEU7,RNASEH2B,GUCY1B2,FAM124A,SERPINE3,INTS6,WDFY2,DHRS12,CCDC70, ATP7B,ALG11,UTP14C,NEK5,NEK3,THSD1P,THSD1,VPS36,CKAP2,LOC220115,HNRNPA1L2,SU GT1,LECT1,PCDH8,OLFM4,PRR20,PCDH17,DIAPH3,TDRD3,PCDH20,OR7E156P,PCDH9,KLHL1,A TXN8OS,DACH1,C13orf37,C13orf34,DIS3,PIBF1,KLF5,KLF12,TBC1D4,COMMD6,UCHL3,LMO7,K Del 13 79853270 80750810 897541 0.091 21.2 0 [Nearest:SPRY2] Del 13 81560965 84274210 2713246 0.094 21.2 1 SLITRK1 Del 13 88065615 88722551 656937 0.046 23.1 0 [Nearest:SLITRK5] Del 13 90275219 90635821 360603 0.049 23.1 0 [Nearest:GPC5] Del 13 92328573 94997616 2669044 0.0063 26.9 7 GPC6,DCT,TGDS,GPR180,SOX21,ABCC4,CLDN10 Del 13 95083997 98172802 3088806 0.031 23.1 12 DZIP1,DNAJC3,UGCGL2,HS6ST3,OXGR1,MBNL2,RAP2A,IPO5,FARP1,RNF113B,STK24,SLC15A1 Del 13 98317642 100091453 1773812 2.5E-05 32.7 10 DOCK9,UBAC2,GPR18,GPR183,TM9SF2,CLYBL,ZIC5,ZIC2,PCCA,TMTC4 Del 13 101871460 103965927 2094468 0.045 23.1 7 TPP2,C13orf39,C13orf27,KDELC1,BIVM,ERCC5,SLC10A2 Del 13 107809852 114114513 6304662 0.00015 34.6 36 MYO16,IRS2,COL4A1,COL4A2,RAB20,CARKD,CARS2,ING1,ANKRD10,ARHGEF7,C13orf16,SOX1, C13orf28,TUBGCP3,C13orf35,ATP11A,MCF2L,F7,F10,PROZ,PCID2,CUL4A,LAMP1,GRTP1,ADPR HL1,DCUN1D2,TMCO3,TFDP1,ATP4B,GRK1,GAS6,FAM70B,RASA3,CDC16,UPF3A,ZNF828 Del 14 18537177 19273289 736113 0.00069 19.2 1 POTEG Del 14 63044773 63326393 281621 0.038 23.1 3 PPP2R5E,WDR89,SGPP1 Del 14 73459936 73735998 276063 0.092 21.2 7 ZNF410,FAM161B,COQ6,ENTPD5,C14orf45,ALDH6A1,LIN52 Del 15 38564500 39859392 1294893 0.023 25 28 MRPL42P5,C15orf57,RPUSD2,CASC5,RAD51,FAM82A2,GCHFR,DNAJC17,ZFYVE19,PPP1R14D,S PINT1,RHOV,VPS18,DLL4,CHAC1,INO80,EXD1,CHP,OIP5,NUSAP1,NDUFAF1,RTF1,ITPKA,LTK,R PAP1,TYRO3,MGA,MAPKBP1 Del 15 40278970 40760625 481656 0.035 25 8 VPS39,TMEM87A,GANC,CAPN3,ZFP106,SNAP23,LRRC57,CEP27 Del 15 40863106 42526919 1663814 0.059 25 30 TTBK2,UBR1,TMEM62,CCNDBP1,EPB42,TGM5,TGM7,LCMT2,ADAL,ZSCAN29,TUBGCP4,TP53B P1,MAP1A,HISPPD2A,CKMT1B,STRC,CATSPER2,CKMT1A,CATSPER2P1,PDIA3,ELL3,SERF2,SERI NC4,HYPK,MFAP1,WDR76,FRMD5,hCG_1789710,CASC4,CTDSPL2 Del 15 43262338 43625804 363467 0.066 21.2 7 SHF,SLC28A2,GATM,SPATA5L1,C15orf48,SLC30A4,C15orf21 Del 15 48775860 48827132 51273 0.048 23.1 1 SPPL2A Del 16 46835481 47048574 213094 0.082 21.2 2 LONP2,SIAH1 Del 16 57157865 57385672 227808 0.016 23.1 3 CNOT1,SLC38A7,GOT2 Del 16 66060036 66567072 507037 0.048 21.2 23 ATP6V0D1,AGRP,FAM65A,CTCF,RLTPR,ACD,PARD6A,C16orf48,C16orf86,GFOD2,RANBP10,TS NAXIP1,CENPT,THAP11,NUTF2,EDC4,NRN1L,PSKH1,CTRL,PSMB10,LCAT,SLC12A4,DPEP3 Del 16 67066190 68710277 1644088 0.093 19.2 22 ZFP90,CDH3,CDH1,TMCO7,HAS3,CHTF8,CIRH1A,SNTB2,VPS4A,PDF,COG8,NIP7,TMED6,TERF2, CYB5B,NFAT5,NQO1,NOB1,WWP2,CLEC18A,PDXDC2,PDPR Del 16 70027145 70664807 637663 0.078 17.3 12 ZNF23,ZNF19,CHST4,TAT,MARVELD3,PHLPPL,AP1G1,ZNF821,KIAA0174,DHODH,HP,HPR Del 16 72788507 74297529 1509023 0.0076 30.8 23 PSMD7,NPIPL2,CLEC18B,GLG1,RFWD3,MLKL,FA2H,WDR59,ZNRF1,LDHD,ZFP1,CTRB2,CTRB1,B CAR1,CFDP1,TMEM170A,CHST6,CHST5,FLJ22167,GABARAPL2,ADAT1,KARS,TERF2IP Del 16 76762418 76787484 25067 0.048 19.2 1 WWOX Del 16 79676479 79770196 93718 0.030 21.2 2 GCSH,PKD1L2 Del 16 85535423 88690571 3155149 0.0019 25 50 FBXO31,MAP1LC3B,ZCCHC14,JPH3,KLHDC4,SLC7A5,CA5A,BANP,ZFPM1,C16orf85,ZC3H18,IL1 7C,CYBA,MVD,SNAI3,RNF166,C16orf84,CDT1,APRT,GALNS,TRAPPC2L,LOC390748,CBFA2T3,A CSF3,CDH15,ZNF778,ANKRD11,SPG7,RPL13,SNORD68,CPNE7,DPEP1,CHMP1A,C16orf55,CDK1 0,SPATA2L,C16orf7,ZNF276,FANCA,SPIRE2,TCF25,MC1R,TUBB3,DEF8,MGC16385,AFG3L1,DB Del 17 59739 123837 64099 0.077 15.4 1 RPH3AL Del 17 24614899 24860068 245170 0.036 21.2 2 NUFIP2,TAOK1 Del 17 25012305 28379989 3367685 0.00014 28.8 36 SSH2,EFCAB5,CCDC55,SLC6A4,BLMH,TMIGD1,CPD,GOSR1,TBC1D29,LRRC37B2,CRLF3,ATAD5, C17orf42,ADAP2,RNF135,DPRXP4,NF1,OMG,EVI2B,EVI2A,RAB11FIP4,C17orf79,UTP6,SUZ12,L RRC37B,RHOT1,ARGFXP2,RHBDL3,C17orf75,ZNF207,PSMD11,CDK5R1,MYO1D,TMEM98,SPAC Del 17 30280055 40869151 10589097 0.00019 34.6 250 RedactedA3,ACCN1 for size Amp 17 56857333 56878925 21593 0.054 26.9 0 [Nearest:TBX4] Amp 17 66517875 68118540 1600666 0.077 25 1 SOX9 Amp 17 68648660 73261801 4613142 0.058 26.9 94 SSTR2,COG1,FAM104A,C17orf80,CDC42EP4,RPL38,TTYH2,DNAI2,KIF19,BTBD17,GPR142,GPR C5C,CD300A,CD300LB,CD300C,CD300LD,C17orf77,CD300E,RAB37,CD300LF,SLC9A3R1,NAT9,T MEM104,GRIN2C,FDXR,FADS6,USH1G,OTOP2,OTOP3,C17orf28,CDR2L,ICT1,ATP5H,KCTD2,SL C16A5,ARMC7,NT5C,HN1,SUMO2,NUP85,GGA3,MRPS7,MIF4GD,SLC25A19,GRB2,KIAA0195,C ASKIN2,TSEN54,LLGL2,MYO15B,RECQL5,SAP30BP,ITGB4,GALK1,H3F3B,UNK,UNC13D,WBP2,T RIM47,TRIM65,MRPL38,FBF1,ACOX1,LOC100134934,CDK3,EVPL,SRP68,GALR2,ZACN,EXOC7,F OXJ1,RNF157,FAM100B,QRICH2,PRPSAP1,SPHK1,UBE2O,AANAT,RHBDF2,CYGB,PRCD,SNORD 1C,SNORD1B,SNORD1A,ST6GALNAC2,ST6GALNAC1,MXRA7,JMJD6,C17orf95,SFRS2,MFSD11, Amp 17 74033196 74127414 94219 0.061 26.9 0 [Nearest:CYTH1]MGAT5B,SEC14L1,9-Sep Del 18 75328796 76110964 782169 1.4E-05 26.9 8 NFATC1,CTDP1,KCNG2,PQLC1,TXNL4A,C18orf22,ADNP2,PARD6G Del 19 210395 63784327 63573933 6.0E-09 61.5 1334 Redacted for size Del 20 28198 132055 103858 0.031 23.1 3 DEFB126,DEFB127,DEFB128 Del 20 590377 758268 167892 0.100 21.2 2 SCRT2,C20orf54 Amp 20 33328121 33380102 51982 0.050 21.2 4 MMP24,EIF6,FAM83C,UQCC Amp 20 33484577 33498977 14401 0.053 21.2 1 GDF5 Amp 20 34049128 34191943 142816 0.041 21.2 2 C20orf152,EPB41L1 Amp 20 34351399 34489892 138494 0.095 19.2 1 DLGAP4 Amp 20 35316053 35397110 81058 0.096 19.2 2 GHRH,MANBAL Amp 20 35979883 36018028 38146 0.097 19.2 1 VSTM2L Amp 20 36190242 36320175 129934 0.044 23.1 2 TGM2,KIAA1755 Amp 20 37781801 38837288 1055488 0.069 21.2 1 MAFB Amp 20 39201874 39422605 220732 0.067 21.2 4 PLCG1,ZHX3,LPIN3,EMILIN3 Amp 20 40175243 40825695 650453 0.074 21.2 1 PTPRT Amp 20 41115978 41618535 502558 0.075 21.2 3 PTPRT,SFRS6,L3MBTL Amp 20 41901726 42288577 386852 0.065 21.2 3 TOX2,JPH2,C20orf111 Amp 20 42546482 42849759 303278 0.090 21.2 7 TTPAL,SERINC3,PKIG,ADA,WISP2,KCNK15,RIMS4 Amp 20 43149289 43358387 209099 0.077 21.2 8 KCNS1,WFDC5,WFDC12,PI3,SEMG1,SEMG2,SLPI,MATN4 Amp 20 45017712 45040335 22624 0.039 23.1 1 EYA2 Amp 20 47630528 47863664 233137 0.046 23.1 2 B4GALT5,SLC9A8 Amp 20 48044723 48076732 32010 0.044 23.1 0 [Nearest:SNAI1] Amp 20 48167886 48831934 664049 0.039 23.1 6 TMEM189-UBE2V1,TMEM189,CEBPB,PTPN1,FAM65C,PARD6B Amp 20 48995829 49388155 392327 0.012 25 3 DPM1,MOCS3,KCNG1 Amp 20 49993851 51351420 1357570 0.025 23.1 2 ZFP64,TSHZ2 Amp 20 51448919 54313916 2864998 0.0100 30.8 9 TSHZ2,ZNF217,SUMO1P1,BCAS1,CYP24A1,PFDN4,DOK5,CBLN4,MC3R Amp 20 54645501 54675684 30184 0.096 23.1 1 TFAP2C Amp 20 57359062 60619854 3260793 0.076 23.1 22 PHACTR3,SYCP2,PPP1R3D,C20orf177,CDH26,C20orf197,CDH4,TAF4,LSM14B,PSMA7,SS18L1, GTPBP5,HRH3,OSBPL2,ADRM1,LAMA5,RPS21,CABLES2,C20orf151,GATA5,C20orf200,C20orf1 Amp 20 61070311 61426553 356243 0.066 25 9 SLC17A9,BHLHE23,HAR1B,HAR1A,YTHDF1,BIRC7,NKAIN4,ARFGAP1,COL20A166 Del 21 33696543 34093159 396617 0.061 21.2 8 IFNGR2,TMEM50B,DNAJC28,GART,SON,DONSON,CRYZL1,ITSN1 Del 21 36366143 36813341 447199 0.038 21.2 6 CBR1,CBR3,DOPEY2,MORC3,CHAF1B,CLDN14 Del 21 39541621 39710767 169147 0.056 21.2 4 BRWD1,HMGN1,WRB,LCA5L Del 21 46270186 46843278 573093 0.0011 28.8 11 COL6A2,FTCD,C21orf56,LSS,MCM3APAS,MCM3AP,C21orf57,C21orf58,PCNT,DIP2A,S100B

* approximate frequency of copy number alteration, see Taylor et al . (2010; ref.6)