(12) United States Patent (10) Patent No.: US 9,347,934 B2 Shekdar Et Al

Total Page:16

File Type:pdf, Size:1020Kb

(12) United States Patent (10) Patent No.: US 9,347,934 B2 Shekdar Et Al USOO9347934B2 (12) United States Patent (10) Patent No.: US 9,347,934 B2 Shekdar et al. (45) Date of Patent: May 24, 2016 (54) ASSAYS FOR IDENTIFYING COMPOUNDS 2008, OO38739 A1 2/2008 Li et al. THAT MODULATE BITTERTASTE 2008/0167286 A1* 7/2008 Gopalakrishnan et al. ........................ 514,21016 (71) Applicants: CHROMOCELL CORPORATION, 2010/01298.33 A1* 5/2010 Brune et al. ................. 435/721 North Brunswick, NJ (US); KRAFT FOODS GROUP BRANDS LLC, FOREIGN PATENT DOCUMENTS Northfield, IL (US) CN 1341632 A 3, 2002 CN 101583717 A 11, 2009 (72) Inventors: Kambiz Shekdar, New York, NY (US); CN 101828.111 A 9, 2010 Purvi Manoj Shah, Bridgewater, NJ WO WO-0038536 A2 7, 2000 WO WO-2004O29087 4/2004 (US); Joseph Gunnet, Flemington, NJ WO WO-2006053771 A2 5, 2006 (US); Jane V. Leland, Wilmette, IL WO WO-2007002026 A2 1/2007 (US); Peter H. Brown, Glenview, IL WO WO-2008057470 5, 2008 (US); Louise Slade, Morris Plains, NJ WO WO-2008119.195 A1 10, 2008 (US) WO WO-20081191.96 10, 2008 WO WO-20081191.97 10, 2008 (73) Assignees: Chromocell Corporation, North W WSi. A2 1929 Brunswick, NJ (US); Kraft Foods WO WO-2010O886.33 8, 2010 Group Brands LLC, Northfield, IL WO WO-2010O99983 A1 9, 2010 (US) WO WO-2013022947 2, 2013 (*) Notice: Subject to any disclaimer, the term of this OTHER PUBLICATIONS patent is extended or adjusted under 35 U.S.C. 154(b) by 0 days. Bachmanov et al., Taste Receptor Genes, 2007, 27:389-414.* Behrens et al., Structural Requirements for Bitter Taste Receptor (21) Appl. No.: 14/352,620 Activation, AChemS 2009 Annual Meeting, Sarasota, FL, Poster P141, Apr. 22-26, 2009. (22) PCT Filed: Oct. 22, 2012 Brockhoff et al., “Structural Requirements of Bitter Taste Receptor Activation.” PNAS, 107(24): 11110-11 115 (2010). (86). PCT No.: PCT/US2O12/0614OO Kim et al., “Positional cloning of the human quantitative trait locus underlying taste sensitivity to phenylthiocarbamide.” Science, S371 (c)(1), 299(5610): 1221-1225 (2003). (2) Date: Apr. 17, 2014 Kuhn et al., “Bitter taste receptors for saccharin and acesulfame K.” Journal of Neuroscience, 24(45): 10260-10265 (2004). (87) PCT Pub. No.: WO2013/059836 (Continued) PCT Pub. Date: Apr. 25, 2013 (65) Prior Publication Data Primary Examiner — John Ulm US 2014/0248.639 A1 Sep. 4, 2014 (74) Attorney, Agent, or Firm — Ropes & Gray LLP. Karen Mangasarian; Brian M. Gummow Related U.S. Application Data (57) ABSTRACT (60) Provisional application No. 61/549,693, filed on Oct. 20, 2011. The present invention is based on applicants discovery, dis closed herein, of agonists for the TAS2R receptors TAS2R1. (51) Int. Cl. TAS2R4, TAS2R9, TAS2R13, TAS2R14, TAS2R16, GOIN33/50 (2006.01) TAS2R44, TAS2R46, and TAS2R60. The assignment of ago GOIN33/74 (2006.01) nists to these receptors makes assays for identifying com (52) U.S. Cl. pounds that modulate bitter taste possible. For example, the CPC ........ G0IN33/5044 (2013.01); G0IN33/5041 present invention provides methods of identifying com (2013.01); G0IN33/74 (2013.01); G0IN pounds that inhibit the bitter taste due to these agonists. The 2333/726 (2013.01) present invention also provides methods of identifying com (58) Field of Classification Search pounds that selectively inhibit the bitter taste due to these None agonists. The present invention further provides methods of See application file for complete search history. identifying compounds that mimic the bitter taste due these agonists. The present invention also provides methods of (56) References Cited identifying compounds that enhance the bitter taste due to U.S. PATENT DOCUMENTS these agonists. 5,853,792 A 12/1998 Zolotov et al. 2008.0003344 A1* 1/2008 Jensen et al. .................. 426,629 21 Claims, 7 Drawing Sheets US 9,347,934 B2 Page 2 (56) References Cited Winnig et al., “Saccharin: Artificial Sweetener, Bitter Tastant, and Sweet Taste Inhibitor.” Sweetness and Sweeteners, Chapter 16, pp. 230-240 Chapter DOI: 10.1021/bk-2008-0979.ch016 ACS Sympo OTHER PUBLICATIONS sium Series, vol. 979 http://pubs.acs.org/doi/abs/10.1021/bk-2008 0979.ch016. Slack et al., “Modulation of bitter taste perception by a small mol Behrens et al., “Bitter taste receptors and human bitter taste percep ecule hTAS2R antagonist.” Currently Biology, 20012): 1104-1109 tion. CMLS Cellular and Molecular Life Sciences, Birkhauser (2010). Verlag, Heidelberg, DE 6(13): 1501-1509 (2006). Slack et al., “Inhibition of Bitter Taste Receptors.” AChemS 2009 Annual Meeting, Sarasota, FL, Poster P195, Apr. 22-26, 2009. * cited by examiner U.S. Patent May 24, 2016 Sheet 1 of 7 US 9,347,934 B2 Figare : S. w 8. 3. is too too is& 8ter 88, U.S. Patent May 24, 2016 Sheet 2 of 7 US 9,347,934 B2 go sy YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY sys- sys- sys-sys-sys-yyyyyyyyyyyyy yyyyyyyyyyyyyy g g g g g g a id , s N y r er, N w U.S. Patent May 24, 2016 Sheet 3 of 7 US 9,347,934 B2 §§5. {{}}, {{}}, i-boz U.S. Patent US 9,347,934 B2 {}{}{} U.S. Patent May 24, 2016 Sheet 5 Of 7 US 9,347,934 B2 sy YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY sy- sy- sy-sys.syssy-six yyyyyyyyyyyyyyy id id s s s g c c c to it, co - \o ir, Sr. e. N --- U.S. Patent May 24, 2016 Sheet 6 of 7 US 9,347,934 B2 st r r ef, kxxxx six-yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy a a c. d g a ce c\, cro s vs. ir, wi - N --- US 9,347,934 B2 1. 2 ASSAYS FOR DENTIFYING COMPOUNDS compound is desirable. The most common sodium chloride THAT MODULATE BITTERTASTE Substitute is potassium chloride, which, to a portion of the population, is perceived as possessing a bitter taste in addition CROSS REFERENCE TO RELATED to its salty taste. The bitter taste of potassium chloride limits APPLICATIONS the extent to which it may be used to replace sodium chloride in foods without causing undesired bitter taste for the portion This application is the National Phase entry under 35 USC of the population sensitive to it. S371 of PCT/US 12/61400, filed Oct. 22, 2012, which claims Another common food additive, sodium lactate, has a priority to U.S. Provisional Application 61/549,693, filed broad antimicrobial action, is effective at inhibiting spoilage, Oct. 20, 2011, which applications are incorporated herein by 10 and growth of pathogenic bacteria, and is commonly used in reference in their entirety. food products (e.g., meat and poultry products) to extend shelflife and increase food safety. Due to its sodium content, SEQUENCE LISTING however, sodium lactate, can be undesirable as a preservative. Potassium lactate, which has similar antimicrobial properties, The Sequence Listing associated with this application is 15 has been used in lieu of Sodium lactate. However, potassium provided in text format in lieu of a paper copy, and is hereby lactate is also associated with a bitter taste which limits the incorporated by reference into the specification. The name of extent to which it may be used to replace Sodium lactate in the text file containing the Sequence Listing is 002298-0027 foods without causing undesired bitter taste. 301-Sequence-Listing..txt. The text file is 110,076 bytes in In addition, the increasing incidence of obesity and diabe size, was created on Apr. 17, 2014, and is being Submitted tes has been attributed, in part, to the high Sugar intake of electronically via EFS Web. many diets. Accordingly, Substitution of Sugar with another Sweet tasting compound is desirable. Artificial and natural FIELD OF THE INVENTION Sugar Substitutes that may be used to reduce Sugar in foods are often associated with bitter taste which again limit the extent The present invention relates to assays for identifying bitter 25 to which these may be used to replace Sugar in foods without taste modulators. causing adverse bitter taste. For example, a common Sugar substitute is Acesulfame K, which also has a bitter taste in BACKGROUND OF THE INVENTION addition to its Sweet taste. Without being limited by theory, bitter, Sweet, and umami The sense of taste, e.g., in human, can detect at least five 30 tastants and compounds typically elicit a taste response via traditional tastes: Sweet, Sour, salty, bitter, and umami (Sa G-protein coupled receptors, while salty and Sour tastants and vory). Many nutritious substances including vegetables, compounds are typically hypothesized to elicit a taste foods, food ingredients and nutrients comprise bitter tastants response via ion channels. Bitter taste receptors belong to the and/or have a bitter taste. In addition, many pharmaceutical TAS2R (also referred to as T2R) family of G-protein coupled Substances important to maintain or improve health comprise 35 receptors that induce intracellular calcium concentration bitter tastants and/or have a bitter taste. While certain food changes in response to a bitter tastant. TAS2R receptors act products and consumer products have desirable bitter tastes, via gustducin, a taste-specific G-protein. There are at least including coffee, beer and dark chocolate, in many contexts, twenty-five different members of the TAS2Rfamily, suggest consumers dislike Such bitter tastes. For example, many con ing that the perception of bitter taste is complex, involving Sumers dislike the perception of certain bitter tastants and/or 40 several different tastant-receptor interactions. Some of the bitter taste and will avoid food or pharmaceutical products TAS2R members, e.g., TAS2R60, are orphan receptors, with an undesirable bitter tastant orbitter taste infavor of food which have not had a ligand identified. Compounds capable and pharmaceutical products that have reduced levels of of modulating the activation and/or signaling of bitter taste undesirable bitter tastants or that have reduced or that com receptors in the oral cavity and/or the gastrointestinal tract pletely lack bitter taste.
Recommended publications
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • Supplementary Table 3 Complete List of RNA-Sequencing Analysis of Gene Expression Changed by ≥ Tenfold Between Xenograft and Cells Cultured in 10%O2
    Supplementary Table 3 Complete list of RNA-Sequencing analysis of gene expression changed by ≥ tenfold between xenograft and cells cultured in 10%O2 Expr Log2 Ratio Symbol Entrez Gene Name (culture/xenograft) -7.182 PGM5 phosphoglucomutase 5 -6.883 GPBAR1 G protein-coupled bile acid receptor 1 -6.683 CPVL carboxypeptidase, vitellogenic like -6.398 MTMR9LP myotubularin related protein 9-like, pseudogene -6.131 SCN7A sodium voltage-gated channel alpha subunit 7 -6.115 POPDC2 popeye domain containing 2 -6.014 LGI1 leucine rich glioma inactivated 1 -5.86 SCN1A sodium voltage-gated channel alpha subunit 1 -5.713 C6 complement C6 -5.365 ANGPTL1 angiopoietin like 1 -5.327 TNN tenascin N -5.228 DHRS2 dehydrogenase/reductase 2 leucine rich repeat and fibronectin type III domain -5.115 LRFN2 containing 2 -5.076 FOXO6 forkhead box O6 -5.035 ETNPPL ethanolamine-phosphate phospho-lyase -4.993 MYO15A myosin XVA -4.972 IGF1 insulin like growth factor 1 -4.956 DLG2 discs large MAGUK scaffold protein 2 -4.86 SCML4 sex comb on midleg like 4 (Drosophila) Src homology 2 domain containing transforming -4.816 SHD protein D -4.764 PLP1 proteolipid protein 1 -4.764 TSPAN32 tetraspanin 32 -4.713 N4BP3 NEDD4 binding protein 3 -4.705 MYOC myocilin -4.646 CLEC3B C-type lectin domain family 3 member B -4.646 C7 complement C7 -4.62 TGM2 transglutaminase 2 -4.562 COL9A1 collagen type IX alpha 1 chain -4.55 SOSTDC1 sclerostin domain containing 1 -4.55 OGN osteoglycin -4.505 DAPL1 death associated protein like 1 -4.491 C10orf105 chromosome 10 open reading frame 105 -4.491
    [Show full text]
  • Transcriptomic Analysis of Native Versus Cultured Human and Mouse Dorsal Root Ganglia Focused on Pharmacological Targets Short
    bioRxiv preprint doi: https://doi.org/10.1101/766865; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Transcriptomic analysis of native versus cultured human and mouse dorsal root ganglia focused on pharmacological targets Short title: Comparative transcriptomics of acutely dissected versus cultured DRGs Andi Wangzhou1, Lisa A. McIlvried2, Candler Paige1, Paulino Barragan-Iglesias1, Carolyn A. Guzman1, Gregory Dussor1, Pradipta R. Ray1,#, Robert W. Gereau IV2, # and Theodore J. Price1, # 1The University of Texas at Dallas, School of Behavioral and Brain Sciences and Center for Advanced Pain Studies, 800 W Campbell Rd. Richardson, TX, 75080, USA 2Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine # corresponding authors [email protected], [email protected] and [email protected] Funding: NIH grants T32DA007261 (LM); NS065926 and NS102161 (TJP); NS106953 and NS042595 (RWG). The authors declare no conflicts of interest Author Contributions Conceived of the Project: PRR, RWG IV and TJP Performed Experiments: AW, LAM, CP, PB-I Supervised Experiments: GD, RWG IV, TJP Analyzed Data: AW, LAM, CP, CAG, PRR Supervised Bioinformatics Analysis: PRR Drew Figures: AW, PRR Wrote and Edited Manuscript: AW, LAM, CP, GD, PRR, RWG IV, TJP All authors approved the final version of the manuscript. 1 bioRxiv preprint doi: https://doi.org/10.1101/766865; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.
    [Show full text]
  • Cellular and Molecular Signatures in the Disease Tissue of Early
    Cellular and Molecular Signatures in the Disease Tissue of Early Rheumatoid Arthritis Stratify Clinical Response to csDMARD-Therapy and Predict Radiographic Progression Frances Humby1,* Myles Lewis1,* Nandhini Ramamoorthi2, Jason Hackney3, Michael Barnes1, Michele Bombardieri1, Francesca Setiadi2, Stephen Kelly1, Fabiola Bene1, Maria di Cicco1, Sudeh Riahi1, Vidalba Rocher-Ros1, Nora Ng1, Ilias Lazorou1, Rebecca E. Hands1, Desiree van der Heijde4, Robert Landewé5, Annette van der Helm-van Mil4, Alberto Cauli6, Iain B. McInnes7, Christopher D. Buckley8, Ernest Choy9, Peter Taylor10, Michael J. Townsend2 & Costantino Pitzalis1 1Centre for Experimental Medicine and Rheumatology, William Harvey Research Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK. Departments of 2Biomarker Discovery OMNI, 3Bioinformatics and Computational Biology, Genentech Research and Early Development, South San Francisco, California 94080 USA 4Department of Rheumatology, Leiden University Medical Center, The Netherlands 5Department of Clinical Immunology & Rheumatology, Amsterdam Rheumatology & Immunology Center, Amsterdam, The Netherlands 6Rheumatology Unit, Department of Medical Sciences, Policlinico of the University of Cagliari, Cagliari, Italy 7Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow G12 8TA, UK 8Rheumatology Research Group, Institute of Inflammation and Ageing (IIA), University of Birmingham, Birmingham B15 2WB, UK 9Institute of
    [Show full text]
  • Involvement of Taste Receptors in the Effectiveness of Sublingual Immunotherapy
    Allergology International 67 (2018) 421e424 Contents lists available at ScienceDirect Allergology International journal homepage: http://www.elsevier.com/locate/alit Letter to the Editor Involvement of taste receptors in the effectiveness of sublingual immunotherapy Dear Editor, RNA or DNA was damaged, 25 samples each in the HR and NR groups underwent microarray analyses. We identified 56 genes, Japanese cedar pollinosis (JCP) is a specific seasonal allergic dis- differentially expressed between the HR and NR patients, based ease which affects ~30% of the Japanese population, between on the log2 ratio of their averages (Fig. 1). Among these, 5 genes February and April, every year.1 Apart from a series of symptom- encoded taste receptors, 4 of which tended to increase in the HR reliever medications, allergen-specific immunotherapy (AIT) is group but not in the NR group, after SLIT. Consistently, the expres- þ one of the most effective treatments for JCP. After several years of sion of TAS2R13, 43 and 50 in CD4 T cells could be retrieved by relying on the application of subcutaneous immunotherapy (SCIT) BioGPS (http://biogps.org/)(Supplementary Figs. 1e3). Among with standardized Japanese cedar pollen extract (since the them, we confirmed the cell surface expression of TAS2R43 on þ 1960s), the use of sublingual immunotherapy (SLIT) was approved CD4 T cells (Supplementary Fig. 4). SLIT-induced increasing ten- in 2014.2 In addition to the numerous clinical and scientific evi- dency was also observed for several small nuclear RNAs and micro- dences pertaining to its effectiveness and safety on JCP including RNAs especially in the HR group.
    [Show full text]
  • LETTER Doi:10.1038/Nature09515
    LETTER doi:10.1038/nature09515 Distant metastasis occurs late during the genetic evolution of pancreatic cancer Shinichi Yachida1*, Siaˆn Jones2*, Ivana Bozic3, Tibor Antal3,4, Rebecca Leary2, Baojin Fu1, Mihoko Kamiyama1, Ralph H. Hruban1,5, James R. Eshleman1, Martin A. Nowak3, Victor E. Velculescu2, Kenneth W. Kinzler2, Bert Vogelstein2 & Christine A. Iacobuzio-Donahue1,5,6 Metastasis, the dissemination and growth of neoplastic cells in an were present in the primary pancreatic tumours from which the meta- organ distinct from that in which they originated1,2, is the most stases arose. A small number of these samples of interest were cell lines common cause of death in cancer patients. This is particularly true or xenografts, similar to the index lesions, whereas the majority were for pancreatic cancers, where most patients are diagnosed with fresh-frozen tissues that contained admixed neoplastic, stromal, metastatic disease and few show a sustained response to chemo- inflammatory, endothelial and normal epithelial cells (Fig. 1a). Each therapy or radiation therapy3. Whether the dismal prognosis of tissue sample was therefore microdissected to minimize contaminat- patients with pancreatic cancer compared to patients with other ing non-neoplastic elements before purifying DNA. types of cancer is a result of late diagnosis or early dissemination of Two categories of mutations were identified (Fig. 1b). The first and disease to distant organs is not known. Here we rely on data gen- largest category corresponded to those mutations present in all samples erated by sequencing the genomes of seven pancreatic cancer meta- from a given patient (‘founder’ mutations, mean of 64%, range 48–83% stases to evaluate the clonal relationships among primary and of all mutations per patient; Fig.
    [Show full text]
  • Molecular Evolution and Deorphanization of Bitter Taste Receptors in a Vampire Bat
    Integrative Zoology 2020; 0: 1–11 doi: 10.1111/1749-4877.12509 ORIGINAL ARTICLE Molecular evolution and deorphanization of bitter taste receptors in a vampire bat Qin LU,1 Hengwu JIAO,1 Yi WANG,1 Ngawang NORBU2 and Huabin ZHAO1,2 1Department of Ecology, Tibetan Centre for Ecology and Conservation at WHU-TU, Hubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University, Wuhan, China and 2Research Center for Ecology, College of Science, Tibet University, Lhasa, China Abstract Bats represent the largest dietary radiation in a single mammalian order, and have become an emerging model group for studying dietary evolution. Taste receptor genes have proven to be molecular signatures of dietary diversification in bats. For example, all 3 extant species of vampire bats have lost many bitter taste receptor genes (Tas2rs) in association with their dietary shift from insectivory to sanguivory. Indeed, only 8 full-length Tas2rs were identified from the high-quality genome of the common vampire bat (Desmodus rotundus). However, it is presently unknown whether these bitter receptors are functional, since the sense of taste is less important in vampire bats, which have an extremely narrow diet and rely on other senses for acquiring food. Here, we applied a molecular evolutionary analysis of Tas2rs in the common vampire bat compared with non-vampire bats. Furthermore, we provided the first attempt to deorphanize all bitter receptors of the vampire bat using a cell-based assay. We found that all Tas2r genes in the vampire bat have a level of selective pressure similar to that in non-vampire bats, suggesting that this species must have retained some bitter taste functions.
    [Show full text]
  • Supplementary Tables Supplemental Table S1: Comparison of the Coverage of Reference Panels Used for SNP Imputation. the Markers
    Supplementary Tables Supplemental Table S1: Comparison of the coverage of reference panels used for SNP imputation. The markers on the Consortium on Asthma among African-ancestry Populations in the Americas (CAAPA) reference panel and Haplotype Reference Consortium (HRG) used to impute SNPs from our AA and CAU participants were compared to one thousand genomes (1kG) dataset. Loci information CAAPA vs 1kG HRC vs 1kG Total loci 45,639,158 90,558,388 Overlapping loci 24,880,301 49,826,569 Percent overlap 54.52% 55.02% 1kG-only loci 9,363,544 15,148,191 Ref-only loci 8,461,186 22,649,501 Supplemental Table S2: SNP imputation results. The total number of SNPs imputed for the AA and CAU participants either using the Michigan imputation server (Minimac) or Beagle. Targets prepared for: AA CAU Beagle 730,616 726,165 Minimac 698,343 660,733 Supplemental Table S3: Allele frequencies of TA2R38 SNPs by each ancestral group and time point. The rs number of each SNP, the location of SNP buy chromosome (CHR) and base pair position (POS) is provided along with the allele frequency (ALLELE:FREQ) for each SNP. Baseline 6-month Baseline 6-month AA (N = 297) AA (N = 234) CAU (N = 198) CAU (N = 151) SNP CHR POS ALLELE:FREQ ALLELE:FREQ ALLELE:FREQ ALLELE:FREQ rs10246939 7 141672604 T:0.49 C:0.51 T:0.50 C:0.50 T:0.54 C:0.46 T:0.54 C:0.46 rs1726866 7 141672705 G:0.68 A:0.32 G:0.68 A:0.32 G:0.46 A:0.54 G:0.46 A:0.54 rs713598 7 141673345 C:0.50 G:0.50 C:0.50 G:0.50 C:0.58 G:0.42 C:0.58 G:0.42 Supplemental Table S4: Linkage disequilibrium analysis of TAS2R38 SNPs at each time point of the intervention.
    [Show full text]
  • Modulation of Food Intake by Differential TAS2R Stimulation In
    nutrients Article Modulation of Food Intake by Differential TAS2R Stimulation in Rat Carme Grau-Bové 1, Alba Miguéns-Gómez 1 , Carlos González-Quilen 1 , José-Antonio Fernández-López 2,3 , Xavier Remesar 2,3 , Cristina Torres-Fuentes 4 , Javier Ávila-Román 4 , Esther Rodríguez-Gallego 1, Raúl Beltrán-Debón 1 , M Teresa Blay 1 , Ximena Terra 1 , Anna Ardévol 1,* and Montserrat Pinent 1 1 MoBioFood Research Group, Department of Biochemistry and Biotechnology, Universitat Rovira i Virgili, 43007 Tarragona, Spain; [email protected] (C.G.-B.); [email protected] (A.M.-G.); [email protected] (C.G.-Q.); [email protected] (E.R.-G.); [email protected] (R.B.-D.); [email protected] (M.T.B.); [email protected] (X.T.); [email protected] (M.P.) 2 Department of Biochemistry and Molecular Biomedicine, Faculty of Biology, University of Barcelona, Av. Diagonal 643, 08028 Barcelona, Spain; [email protected] (J.-A.F.-L.); [email protected] (X.R.) 3 CIBER Obesity and Nutrition, Institute of Health Carlos III, Av. Diagonal 643, 08028 Barcelona, Spain 4 Nutrigenomics Research Group, Department of Biochemistry and Biotechnology, Universitat Rovira i Virgili, 43007 Tarragona, Spain; [email protected] (C.T.-F.); [email protected] (J.Á.-R.) * Correspondence: [email protected]; Tel.: +34-977-559-566 Received: 31 October 2020; Accepted: 4 December 2020; Published: 10 December 2020 Abstract: Metabolic surgery modulates the enterohormone profile, which leads, among other effects, to changes in food intake. Bitter taste receptors (TAS2Rs) have been identified in the gastrointestinal tract and specific stimulation of these has been linked to the control of ghrelin secretion.
    [Show full text]
  • G Protein-Coupled Receptors
    S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2015/16: G protein-coupled receptors. British Journal of Pharmacology (2015) 172, 5744–5869 THE CONCISE GUIDE TO PHARMACOLOGY 2015/16: G protein-coupled receptors Stephen PH Alexander1, Anthony P Davenport2, Eamonn Kelly3, Neil Marrion3, John A Peters4, Helen E Benson5, Elena Faccenda5, Adam J Pawson5, Joanna L Sharman5, Christopher Southan5, Jamie A Davies5 and CGTP Collaborators 1School of Biomedical Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK, 2Clinical Pharmacology Unit, University of Cambridge, Cambridge, CB2 0QQ, UK, 3School of Physiology and Pharmacology, University of Bristol, Bristol, BS8 1TD, UK, 4Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK, 5Centre for Integrative Physiology, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2015/16 provides concise overviews of the key properties of over 1750 human drug targets with their pharmacology, plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. The full contents can be found at http://onlinelibrary.wiley.com/doi/ 10.1111/bph.13348/full. G protein-coupled receptors are one of the eight major pharmacological targets into which the Guide is divided, with the others being: ligand-gated ion channels, voltage-gated ion channels, other ion channels, nuclear hormone receptors, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading.
    [Show full text]
  • G Protein‐Coupled Receptors
    S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2019/20: G protein-coupled receptors. British Journal of Pharmacology (2019) 176, S21–S141 THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: G protein-coupled receptors Stephen PH Alexander1 , Arthur Christopoulos2 , Anthony P Davenport3 , Eamonn Kelly4, Alistair Mathie5 , John A Peters6 , Emma L Veale5 ,JaneFArmstrong7 , Elena Faccenda7 ,SimonDHarding7 ,AdamJPawson7 , Joanna L Sharman7 , Christopher Southan7 , Jamie A Davies7 and CGTP Collaborators 1School of Life Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK 2Monash Institute of Pharmaceutical Sciences and Department of Pharmacology, Monash University, Parkville, Victoria 3052, Australia 3Clinical Pharmacology Unit, University of Cambridge, Cambridge, CB2 0QQ, UK 4School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, BS8 1TD, UK 5Medway School of Pharmacy, The Universities of Greenwich and Kent at Medway, Anson Building, Central Avenue, Chatham Maritime, Chatham, Kent, ME4 4TB, UK 6Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK 7Centre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2019/20 is the fourth in this series of biennial publications. The Concise Guide provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to the open access knowledgebase source of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website.
    [Show full text]
  • Potential Targets of FOXL2, a Transcription Factor Involved in Craniofacial and Follicular Development, Identified by Transcriptomics
    Potential targets of FOXL2, a transcription factor involved in craniofacial and follicular development, identified by transcriptomics Frank Batista*, Daniel Vaiman*†, Jean Dausset‡§, Marc Fellous*¶, and Reiner A. Veitia*¶ʈ *De´partement de Ge´ne´ tique et De´veloppement, Institut Cochin, Institut National de la Sante´et de la Recherche Me´dicale U567, Centre National de la Recherche Scientifique Unite´Mixte de Recherche 8104, and Faculte´deMe´ decine Rene´Descartes, Universite´Paris V UM 3, 75014 Paris, France; †De´partement de Ge´ne´ tique Animale, Institut National de la Recherche Agronomique, 75338 Paris Cedex 07, France; ‡Fondation Jean Dausset, Centre d’Etude du Polymorphisme Humain, 75010 Paris, France; and ¶Universite´Denis Diderot/Paris VII, 75005 Paris, France Contributed by Jean Dausset, December 21, 2006 (sent for review November 16, 2006) FOXL2 is a gene encoding a forkhead transcription factor, polyAla has recently been reported in a nonsyndromic (i.e., not whose mutations are responsible for the blepharophimosis-ptosis- BPES-related) case of premature ovarian failure (9). epicanthus inversus syndrome that often involves premature ovar- In humans, FOXL2 is one of the earliest known markers of ian failure. FOXL2 is one of the earliest ovarian markers and it ovarian differentiation (3). Thus, it may play a role at an early stage offers, along with its targets, an excellent model to study ovarian of development of the ovarian somatic compartment. Because development and function in normal and pathological conditions. FOXL2 is still strongly expressed in postnatal and adult follicular We have recently shown that the aromatase gene is a target of cells, it may also play a role throughout female fertile life in FOXL2, and only three other targets have been reported so far.
    [Show full text]