Membrane Trafficking of Death Receptors: Implications on Signalling
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Cytokine Nomenclature
RayBiotech, Inc. The protein array pioneer company Cytokine Nomenclature Cytokine Name Official Full Name Genbank Related Names Symbol 4-1BB TNFRSF Tumor necrosis factor NP_001552 CD137, ILA, 4-1BB ligand receptor 9 receptor superfamily .2. member 9 6Ckine CCL21 6-Cysteine Chemokine NM_002989 Small-inducible cytokine A21, Beta chemokine exodus-2, Secondary lymphoid-tissue chemokine, SLC, SCYA21 ACE ACE Angiotensin-converting NP_000780 CD143, DCP, DCP1 enzyme .1. NP_690043 .1. ACE-2 ACE2 Angiotensin-converting NP_068576 ACE-related carboxypeptidase, enzyme 2 .1 Angiotensin-converting enzyme homolog ACTH ACTH Adrenocorticotropic NP_000930 POMC, Pro-opiomelanocortin, hormone .1. Corticotropin-lipotropin, NPP, NP_001030 Melanotropin gamma, Gamma- 333.1 MSH, Potential peptide, Corticotropin, Melanotropin alpha, Alpha-MSH, Corticotropin-like intermediary peptide, CLIP, Lipotropin beta, Beta-LPH, Lipotropin gamma, Gamma-LPH, Melanotropin beta, Beta-MSH, Beta-endorphin, Met-enkephalin ACTHR ACTHR Adrenocorticotropic NP_000520 Melanocortin receptor 2, MC2-R hormone receptor .1 Activin A INHBA Activin A NM_002192 Activin beta-A chain, Erythroid differentiation protein, EDF, INHBA Activin B INHBB Activin B NM_002193 Inhibin beta B chain, Activin beta-B chain Activin C INHBC Activin C NM005538 Inhibin, beta C Activin RIA ACVR1 Activin receptor type-1 NM_001105 Activin receptor type I, ACTR-I, Serine/threonine-protein kinase receptor R1, SKR1, Activin receptor-like kinase 2, ALK-2, TGF-B superfamily receptor type I, TSR-I, ACVRLK2 Activin RIB ACVR1B -
Comprehensive Product List
Catalog # Product Description Retail Price OEM Price 1007 Antibody IL-1R associated kinase 225/100ug 125/100ug 1009 Antibody HIV & chemokine receptor 225/100ug 125/100ug 1012 Antibody HIV & chemokine receptor 225/100ug 125/100ug 1021 Antibody JAK activated transcription 225/100ug 125/100ug 1107 Antibody Tyrosine kinase substrate p62DOK 225/100ug 125/100ug 1112 Antibody HIV & chemokine receptor 225/100ug 125/100ug 1113 Antibody Ligand for DR4 and DR5 225/100ug 125/100ug 1115 Antibody Adapter Molecule 225/100ug 125/100ug 1117 Antibody Adapter Molecule 225/100ug 125/100ug 1120 Antibody Cell Death Receptor 225/100ug 125/100ug 1121 Antibody Ligand for GFRa-2 225/100ug 125/100ug 1123 Antibody CCR3 ligand 225/100ug 125/100ug 1125 Antibody Tyrosine kinase substrate 225/100ug 125/100ug 1128 Antibody A new caspase 225/100ug 125/100ug 1129 Antibody NF-kB inducing kinase 225/100ug 125/100ug 1131 Antibody TNFa converting enzyme 225/100ug 125/100ug 1133 Antibody GDNF receptor 225/100ug 125/100ug 1135 Antibody Neurturin receptor 225/100ug 125/100ug 1137 Antibody Persephin receptor 225/100ug 125/100ug 1139 Antibody Death Receptor for TRAIL 225/100ug 125/100ug 1141 Antibody DNA fragmentation factor & Inhibitor of CAD 225/100ug 125/100ug 1148 Antibody DNA fragmentation factor & Inhibitor of CAD 225/100ug 125/100ug 1150 Antibody Activator of MAPK pathway 225/100ug 125/100ug 1151 Antibody Apoptosis Signal-regulation Kinase 225/100ug 125/100ug 1156 Antibody FLICE inhibitory protein 225/100ug 125/100ug 1158 Antibody Cell Death Receptor 225/100ug 125/100ug 1159 -
Development and Validation of a Protein-Based Risk Score for Cardiovascular Outcomes Among Patients with Stable Coronary Heart Disease
Supplementary Online Content Ganz P, Heidecker B, Hveem K, et al. Development and validation of a protein-based risk score for cardiovascular outcomes among patients with stable coronary heart disease. JAMA. doi: 10.1001/jama.2016.5951 eTable 1. List of 1130 Proteins Measured by Somalogic’s Modified Aptamer-Based Proteomic Assay eTable 2. Coefficients for Weibull Recalibration Model Applied to 9-Protein Model eFigure 1. Median Protein Levels in Derivation and Validation Cohort eTable 3. Coefficients for the Recalibration Model Applied to Refit Framingham eFigure 2. Calibration Plots for the Refit Framingham Model eTable 4. List of 200 Proteins Associated With the Risk of MI, Stroke, Heart Failure, and Death eFigure 3. Hazard Ratios of Lasso Selected Proteins for Primary End Point of MI, Stroke, Heart Failure, and Death eFigure 4. 9-Protein Prognostic Model Hazard Ratios Adjusted for Framingham Variables eFigure 5. 9-Protein Risk Scores by Event Type This supplementary material has been provided by the authors to give readers additional information about their work. Downloaded From: https://jamanetwork.com/ on 10/02/2021 Supplemental Material Table of Contents 1 Study Design and Data Processing ......................................................................................................... 3 2 Table of 1130 Proteins Measured .......................................................................................................... 4 3 Variable Selection and Statistical Modeling ........................................................................................ -
Tumor Necrosis Factor Receptor Superfamily 12 May Destabilize Atherosclerotic Plaques by Inducing Matrix Metalloproteinases
RAPID COMMUNICATION Jpn Circ J 2001; 65: 136–138 Tumor Necrosis Factor Receptor Superfamily 12 may Destabilize Atherosclerotic Plaques by Inducing Matrix Metalloproteinases Se-Hwa Kim, BS; Won-Ha Lee, PhD; Byoung S. Kwon, PhD*; Goo Taeg Oh, PhD**; Yoon-Ho Choi, MD; Jeong-Euy Park, MD, PhD Immunohistochemical staining of human atherosclerotic plaques revealed expression of the tumor necrosis factor receptor superfamily (TNFRSF) 12 in regions rich in macrophage/foam cells. The role of TNFRSF12 in the functioning of monocytes in relation to atherogenesis was investigated by analysis of cellular events after stimulation of TNFRSF12 in a human macrophage-like cell line, THP-1. Activation of the THP-1 cells on plates coated with monoclonal antibody against TNFRSF12 induced the expression of matrix metalloproteinases (MMPs) -1, -9, and -13. Furthermore, the expression patterns of TNFRSF12 and the MMPs overlapped in atherosclerotic plaques. Signaling of TNFRSF12 may thus contribute to the induction of extracellular matrix degrading enzymes in macrophages. (Jpn Circ J 2001; 65: 136–138) Key Words: Atherosclerosis; Matrix metalloproteinase; Tumor necrosis factor receptor superfamily he stability of atherosclerotic plaques depends greatly sion in atherosclerotic plaques. Subsequently, we looked on the integrity of the fibrous cap, which in turn into the expression of MMPs in THP-1 cells (American T depends on its extracellular matrix protein content. Type Culture Collection, Rockville, MD, USA) after stim- Dysregulation of the interplay between matrix degrading ulation of the TNFRSF12. enzymes, such as matrix metalloproteinases (MMPs), and The immunohistochemical analysis of human athero- their inhibitors, such as tissue inhibitor of metalloproteinases sclerotic plaques obtained from carotid endoarterectomies (TIMPs), is believed to be responsible for the rupture of was approved by an institutional review committee and the atherosclerotic plaques.1 MMP-1 and MMP-13, which subjects gave their informed consent. -
Signaling TNF-Like Ligand 1A/Death Receptor 3 the Adaptor Protein
The Adaptor Protein TRADD Is Essential for TNF-Like Ligand 1A/Death Receptor 3 Signaling This information is current as Yelena L. Pobezinskaya, Swati Choksi, Michael J. Morgan, of September 24, 2021. Xiumei Cao and Zheng-gang Liu J Immunol 2011; 186:5212-5216; Prepublished online 18 March 2011; doi: 10.4049/jimmunol.1002374 http://www.jimmunol.org/content/186/9/5212 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2011/03/18/jimmunol.100237 Material 4.DC1 http://www.jimmunol.org/ References This article cites 29 articles, 13 of which you can access for free at: http://www.jimmunol.org/content/186/9/5212.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 24, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology The Adaptor Protein TRADD Is Essential for TNF-Like Ligand 1A/Death Receptor 3 Signaling Yelena L. Pobezinskaya, Swati Choksi, Michael J. Morgan, Xiumei Cao, and Zheng-gang Liu TNFR-associated death domain protein (TRADD) is a key effector protein of TNFR1 signaling. -
DR3 Team and My Other Colleagues Within Medical Biochemistry and Medical Microbiology for Their Daily Advice and Entertainment
The Role of Death Receptor 3 in Health and Disease A thesis submitted in candidature for the degree of DOCTOR OF PHILOSOPHY By Melanie Jane Bull January 2009 Medical Biochemistry and Immunology, Cardiff University, Wales College of Medicine Cardiff, CF14 4XN, UK. UMI Number: U584341 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. Dissertation Publishing UMI U584341 Published by ProQuest LLC 2013. Copyright in the Dissertation held by the Author. Microform Edition © ProQuest LLC. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 DECLARATION This work has not previously been accepted in substance for any degree and is not concurrently submitted in candidature for any degree. Signed ................(Melanie Bull) Date M.J.ll.J.l.lQ.T.\.. STATEMENT 1 This thesis is being submitted in partial fulfillment of the requirements for the degree of PhD Signed . ............... (Melanie Bull) Date ..... STATEMENT 2 This thesis is the result of my own independent work/investigation, except where otherwise stated. Other sources are acknowledged by explicit references. Signed ................ (Melanie Bull) Date \cs!°.1..1.ZlX?.ca......... STATEMENT 3 I hereby give consent for my thesis, if accepted, to be available for photocopying and for inter-library loan, and for the title and summary to be made available to outside organisations. -
Defining Molecular Adjuvant Effects on Human B Cell Subsets
DEFINING MOLECULAR ADJUVANT EFFECTS ON HUMAN B CELL SUBSETS A DISSERTATION SUBMITTED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAIʻI AT MĀNOA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN BIOMEDICAL SCIENCES (TROPICAL MEDICINE) August 2019 By Jourdan Posner Dissertation Committee: Sandra P. Chang, Chairperson George Hui Saguna Verma William Gosnell Alan Katz ACKNOWLEDGMENTS First and foremost, I would like to express my gratitude to my PhD advisor and mentor, Dr. Sandra Chang. Her passion for science, scientific rigor, and inquisitive nature have been an inspiration to me. I am very grateful for her continuous support and mentorship. I would also like to thank my committee members, Dr. George Hui, Dr. Saguna Verma, Dr. William Gosnell, and Dr. Alan Katz, for their advice and support on this dissertation work. To my parasitology “dads”, Dr. Kenton Kramer and Dr. William Gosnell, I am forever grateful for all of the opportunities you’ve given to me. Your mentorship has guided me through the doctoral process and helped me to maintain “homeostasis”. Last, but not least, I’d like to thank my parents and brother who have been so supportive throughout my entire graduate career. I greatly appreciate all of the encouraging words and for always believing in me. And to my future husband, Ian, I could not have completed this dissertation work without your endless support. You are my rock. ii ABSTRACT Recent advances in vaccine development include the incorporation of novel adjuvants to increase vaccine immunogenicity and efficacy. Pattern recognition receptor (PRR) ligands are of particular interest as vaccine adjuvants. -
Characterisation of Chicken OX40 and OX40L
Characterisation of chicken OX40 and OX40L von Stephanie Hanna Katharina Scherer Inaugural-Dissertation zur Erlangung der Doktorw¨urde der Tier¨arztlichenFakult¨at der Ludwig-Maximilians-Universit¨atM¨unchen Characterisation of chicken OX40 and OX40L von Stephanie Hanna Katharina Scherer aus Baunach bei Bamberg M¨unchen2018 Aus dem Veterin¨arwissenschaftlichenDepartment der Tier¨arztlichenFakult¨at der Ludwig-Maximilians-Universit¨atM¨unchen Lehrstuhl f¨urPhysiologie Arbeit angefertigt unter der Leitung von Univ.-Prof. Dr. Thomas G¨obel Gedruckt mit Genehmigung der Tier¨arztlichenFakult¨at der Ludwig-Maximilians-Universit¨atM¨unchen Dekan: Univ.-Prof. Dr. Reinhard K. Straubinger, Ph.D. Berichterstatter: Univ.-Prof. Dr. Thomas G¨obel Korreferenten: Priv.-Doz. Dr. Nadja Herbach Univ.-Prof. Dr. Bernhard Aigner Prof. Dr. Herbert Kaltner Univ.-Prof. Dr. R¨udiger Wanke Tag der Promotion: 27. Juli 2018 Meinen Eltern und Großeltern Contents List of Figures 11 Abbreviations 13 1 Introduction 17 2 Fundamentals 19 2.1 T cell activation . 19 2.1.1 The activation of T cells requires the presence of several signals 19 2.1.2 Costimulatory signals transmitted via members of the im- munoglobulin superfamily . 22 2.1.3 Costimulatory signals transmitted via members of the cy- tokine receptor family . 23 2.1.4 Costimulatory signals transmitted via members of the tumour necrosis factor receptor superfamily . 24 2.2 The tumour necrosis factor receptor superfamily . 26 2.2.1 The structure of tumour necrosis factor receptors . 26 2.2.2 Functional classification of TNFRSF members . 28 2.3 The tumour necrosis factor superfamily . 29 2.3.1 The structure of tumour necrosis factor ligands . -
A Comparison of the Cytoplasmic Domains of the Fas Receptor and the P75 Neurotrophin Receptor
Cell Death and Differentiation (1999) 6, 1133 ± 1142 ã 1999 Stockton Press All rights reserved 13509047/99 $15.00 http://www.stockton-press.co.uk/cdd A comparison of the cytoplasmic domains of the Fas receptor and the p75 neurotrophin receptor 1,2 1,2 1 ,1 H Kong , AH Kim , JR Orlinick and MV Chao* Introduction 1 Molecular Neurobiology Program, Skirball Institute, New York University The p75 receptor is the founding member of the TNF Medical Center, 540 First Avenue, New York, NY 10016, USA receptor superfamily.1 Structural features shared by several 2 The ®rst two authors contributed equally to this study members of this family include a cysteine-rich extracellular * Corresponding author: MV Chao, Molecular Neurobiology Program, Skirball domain repeated two to six times and an intracellular motif Institute, New York University Medical Center, 540 First Avenue, New York, NY termed the `death domain'. The term `death domain' was 10016, USA. Tel: +1 212-263-0722; Fax: +1 212-263-0723; E-mail: [email protected] coined from its functional role in mediating apoptosis, particularly via the p55 TNF receptor and FasR.2,3 The Received 15.7.98; revised 20.8.99; accepted 23.8.99 death domain is a protein association motif4,5 that binds to Edited by C Thiele cytoplasmic proteins, which can trigger the caspase protease cascade or other signal transduction pathways. Multiple adaptor and death effector proteins that bind to the Abstract death domains of the p55 TNF and Fas receptors have The p75 neurotrophic receptor (p75) shares structural been identified. -
Cell Structure & Function
Cell Structure & Function Antibodies and Reagents BioLegend is ISO 13485:2016 Certified Toll-Free Tel: (US & Canada): 1.877.BIOLEGEND (246.5343) Tel: 858.768.5800 biolegend.com 02-0012-03 World-Class Quality | Superior Customer Support | Outstanding Value Table of Contents Introduction ....................................................................................................................................................................................3 Cell Biology Antibody Validation .............................................................................................................................................4 Cell Structure/ Organelles ..........................................................................................................................................................8 Cell Development and Differentiation ................................................................................................................................10 Growth Factors and Receptors ...............................................................................................................................................12 Cell Proliferation, Growth, and Viability...............................................................................................................................14 Cell Cycle ........................................................................................................................................................................................16 Cell Signaling ................................................................................................................................................................................18 -
Death Receptor 3 (DR3) Gene Duplication in a Chromosome Region 1P36.3: Gene Duplication Is More Prevalent in Rheumatoid Arthritis
Genes and Immunity (2004) 5, 439–443 & 2004 Nature Publishing Group All rights reserved 1466-4879/04 $30.00 www.nature.com/gene FULL PAPER Death receptor 3 (DR3) gene duplication in a chromosome region 1p36.3: gene duplication is more prevalent in rheumatoid arthritis K Osawa1,2, N Takami1,2, K Shiozawa3, A Hashiramoto1,2,4 and S Shiozawa1,2,4,5 1Department of Rheumatology, Kobe University FHS School of Medicine, Kobe, Japan; 2Division of Bioregulation, Kobe University Graduate School of Medicine, Kobe, Japan; 3Department of Rheumatology, Konan Kakogawa Hospital, Kakogawa, Japan; 4Rheumatic Diseases Division, Kobe University Hospital, Kobe, Japan; 5Investigator of the Center of Excellence (COE), Japan The death receptor 3 (DR3) gene is a member of the apoptosis-inducing Fas gene family. In the current study, fluorescence in situ hybridization (FISH) and Fiber-FISH revealed the existence of a second DR3 gene B200 kb upstream of the original DR3 gene. The existence of the duplicated DR3 gene was confirmed by sequencing the corresponding human artificial chromosome clones as well as with quantitative PCR that measured the ratio of the DR3 gene mutation (Rm), intrinsic to rheumatoid arthritis (RA) patients, by simultaneous amplification of the normal and mutated DR3 sequences. The DR3 gene duplication measured by FISH was found to be more frequent in patients with RA as compared to healthy individuals. We therefore surmise that the human DR3 gene can be duplicated and that this gene duplication is more prevalent in patients with RA. Genes and Immunity (2004) 5, 439–443. doi:10.1038/sj.gene.6364097 Published online 8 July 2004 Keywords: gene duplication; death receptor 3 (DR3); fluorescence in situ hybridization (FISH); rheumatoid arthritis (RA) Introduction The current study examines the location of the DR3 gene based on the previous findings of Grenet et al,7 who The death receptor 3 (DR3), also named Ws1, Apo3, showed that the DR3 gene was duplicated and tandemly TRAMP, LARD, TR3 or TNFRSF25, is a member of the located in 1p36.2–1p36.3 in one male healthy donor. -
Death Receptor 6 Contributes to Autoimmunity in Lupus-Prone Mice
ARTICLE Received 25 Oct 2015 | Accepted 15 Nov 2016 | Published 3 Jan 2017 DOI: 10.1038/ncomms13957 OPEN Death receptor 6 contributes to autoimmunity in lupus-prone mice Daisuke Fujikura1,2,3, Masahiro Ikesue2, Tsutomu Endo2, Satoko Chiba1,3, Hideaki Higashi1 & Toshimitsu Uede2 Expansion of autoreactive follicular helper T (Tfh) cells is tightly restricted to prevent induction of autoantibody-dependent immunological diseases, such as systemic lupus erythematosus (SLE). Here we show expression of an orphan immune regulator, death receptor 6 (DR6/TNFRSF21), on a population of Tfh cells that are highly expanded in lupus-like disease progression in mice. Genome-wide screening reveals an interaction between syndecan-1 and DR6 resulting in immunosuppressive functions. Importantly, syndecan-1 is expressed specifically on autoreactive germinal centre (GC) B cells that are critical for maintenance of Tfh cells. Syndecan-1 expression level on GC B cells is associated with Tfh cell expansion and disease progression in lupus-prone mouse strains. In addition, Tfh cell suppression by DR6-specific monoclonal antibody delays disease progression in lupus-prone mice. These findings suggest that the DR6/syndecan-1 axis regulates aberrant GC reactions and could be a therapeutic target for autoimmune diseases such as SLE. 1 Division of Infection and Immunity, Hokkaido University Research Center for Zoonosis Control, North-20, West-10, Kita-ku, Sapporo 001-0020, Japan. 2 Division of Molecular Immunology, Hokkaido University Institute for Genetic Medicine, North-15, West-7, Kita-ku, Sapporo 060-0815, Japan. 3 Division of Bioresources, Hokkaido University Research Center for Zoonosis Control, North-20, West-10, Kita-ku, Sapporo 001-0020, Japan.