Pleomorphic Forms of Bradyrhizobium Japonicum H

Total Page:16

File Type:pdf, Size:1020Kb

Pleomorphic Forms of Bradyrhizobium Japonicum H APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Mar. 1989, p. 666-671 Vol. 55, No. 3 0099-2240/89/030666-06$02.00/0 Copyright C 1989, American Society for Microbiology Physiological Characterization of Dicarboxylate-Induced Pleomorphic Forms of Bradyrhizobium japonicum H. KEITH REDINGt AND JOE EUGENE LEPOt* Department of Biology, The University of Mississippi, University, Mississippi 38677 Received 12 August 1988/Accepted 12 December 1988 When Bradyrhizobiumjaponicum 1-110 was transferred into medium containing 40 mM succinate or 40 mM fumarate, over 90% of the bacteria acquired a swollen, pleomorphic form similar to that of bacteroids. The induction of pleomorphism was dependent on the carbon substrate and concentration but was independent of the hydrogen ion and sodium ion concentration. Cell extracts of rod-shaped and pleomorphic cells contained enzymes required for sugar catabolism and gluconeogenesis. Variations in these enzyme profiles were correlated with the carbon source used and not with the conversion to the bacteroid-like morphology. Rod-shaped cells cultured on glucose or 10 mM succinate transported glucose and succinate; however, the pleomorphic cells behaved similarly to symbiotic bacteroids in that they lacked the ability to transport glucose and transported succinate at lower rates than did rod-shaped cells. Rhizobia form symbioses with a variety of leguminous pH and mono- and divalent cation concentrations. In addi- plants. The plants produce photosynthate, some of which tion, we report the activity profiles of carbohydrate-catabo- supplies the reductant and ATP required for nitrogen fixa- lizing enzymes and substrate uptake activities of rod-shaped tion. This substrate may limit nitrogen fixation rates (1, 14). and pleomorphic cells. Thus, we have compared the physi- Although sucrose and sugar alcohols are the most abun- ology of rod-shaped and pleomorphic cells with that of dant carbon-containing compounds in the nodule cytosol symbiotic bacteroids to determine whether the substrate- (14), dicarboxylic acids are the most likely class of com- induced morphological transformation in free-living cells is pounds to support symbiotic nitrogen fixation for the follow- accompanied by an altered physiology analogous to that of ing reasons: (i) bacteroids do not transport (16) or oxidize the bacteroids. We found that the pleomorphic cells had a (41) sugars, (ii) bacteroids do oxidize (9, 26, 41) and trans- carbon substrate catabolic enzyme profile similar to that of port (6, 11, 29) tricarboxylic acid cycle intermediates, (iii) the rod-shaped cells; however, such pleomorphic cells had mutants defective in sugar metabolism form effective sym- glucose and succinate transport capabilities characteristic of bioses (10, 31), and (iv) mutants defective in dicarboxylate bacteroids. metabolism form ineffective symbioses (6, 7, 30). The recent introduction of dicarboxylate transport (dct) genes from MATERIALS AND METHODS Rhizobium meliloti into Bradyrhizobium japonicum pro- duced a strain with enhanced succinate uptake and free- Organism and cultivation. B. japonicum strains USDA living nitrogen-fixing activities (2). 1-110 and USDA 136 were obtained from the U.S. Depart- Early in the symbiotic association, the rhizobia develop ment of Agriculture culture collection at Beltsville, Md. structurally and physiologically into bacteroids. The bacteria Unless otherwise indicated, all studies were performed with change from a rod shape to a swollen, pleomorphic form (4) strain 1-110. in which cell division ceases (13). Free-living Rhizobium Bacteria were maintained on agar slants of hydrogen trifolii acquire a similar morphology when cultured in media uptake medium (HUM; 22) containing 20 mM sodium glu- containing succinate (42), as do rhizobia cultured in the conate as the sole source of carbon. Experimental cultures presence of alkaloids (43) or yeast extract (17, 18, 35, 40). were grown in a modified HUM broth supplemented with The physiological differentiation, aside from the develop- biotin (1 mg/liter) and NH4Cl (1 g/liter). Other carbon ment of the nitrogen-fixing mechanism, consists of changes substrates replaced the gluconate as indicated. The medium in carbon substrate metabolic capabilities. In general, sugar- was adjusted to pH 7.0 with 5 N NaOH or concentrated catabolizing pathways, e.g., Entner-Doudoroff (ED) and NH40H before autoclaving. Phosphates (10 mM NaPO4, pH Embden-Meyerhoff-Parnas, are shut down (28, 32, 34, 39). 7.0), iron-EDTA, and carbon substrates were autoclaved Moreover, free-living rhizobia actively transport glucose separately and added to the sterile salts-vitamin solution. (33, 38) and dicarboxylates (5, 16, 24), whereas bacteroids Solid medium contained 15 g of agar (Sigma Chemical Co., transport dicarboxylates but not sugars (6, 12, 29, 33). St. Louis, Mo.) per liter. This study further elucidates the role of dicarboxylates in Experimental cultures grown on solid media were incu- the Rhizobium-legume symbiosis. We have characterized bated at 29°C. Broth cultures in 20-mm test tubes were requirements for the induction of a bacteroid-like morphol- shaken at 29°C in a shaker-incubator (model G25; New ogy in free-living cells as well as the effects of factors such as Brunswick Scientific Co., Inc., Edison, N.J.). Growth was monitored by noting the optical density at 540 nm, using a Spectronic 501 spectrophotometer (Bausch & Lomb, Inc., * Corresponding author. Rochester, N.Y.). t Present address: Department of Microbiology, University of To determine cell morphology, heat-fixed smears were Georgia, Athens, GA 30602. prepared at the desired time, stained for 1 min with crystal t Present address: ECOGEN Inc., 2005 Cabot Boulevard West, violet, and viewed under bright-field oil immersion, using a Langhorne, PA 19047-1810. Nikon Optiphot microscope. 666 VOL. 55, 1989 DICARBOXYLATE-INDUCED PLEOMORPHISM OF B. JAPONICUM 667 FIG. 1. B. japonicum 1-110 grown on (A) 20 mM gluconate and (B) 40 mM succinate. Photomicrographs were taken with a phase-contrast Nikon Optiphot microscope (magnification, x4,000). Inoculation of cultures for enzyme and transport studies. All enzymes were assayed at 30°C in a quartz cuvette with Starter cultures grown on HUM-gluconate (20 mM) or a 1-cm light path. The change in absorbance was monitored HUM-L-arabinose (20 mM) were transferred to sterile cen- by using a Bausch & Lomb Spectronic 501 spectrophotom- trifuge tubes and centrifuged at 7,000 x g and 4°C for 10 min. eter; in each assay, minus-substrate controls were used. All The cells were washed twice with 10 mM phosphate-buffered commercial enzymes were purchased from Sigma. HUM salts, resuspended in the buffered salts, and used to Transport of glucose and succinate by whole cells. Cells inoculate experimental cultures for enzyme and transport from 500-ml liter cultures were collected by centrifugation, studies. washed twice with the uptake medium (HUM salts, NH4Cl, Protein determination. For the cell extract, protein was vitamins, and 10 mM NaPO4, pH 7.0), and suspended in 5 ml estimated by the dye-binding method of Bradford (3), with of uptake medium. The whole-cell suspension was diluted bovine serum albumin as a standard. For uptake assays, with uptake medium to contain 1 mg of protein per ml. Each whole cells and bovine serum albumin standards were first uptake assay required 2.5 ml of cell suspension. digested by a modification of the method of Stickland (36) in Glucose or succinate was added to the cell suspension at a which 1 ml of whole-cell suspension was heated to 100°C for final concentration of 2 mM. The assay was initiated by the 5 min in 3% NaOH. addition of [2,3-14C]glucose (0.13 to 0.28 ,uCi per assay Preparation of cell extract. Two liters of early-stationary- mixture) or [2,3-_4C]succinate (0.91 to 1.76 ,uCi per assay phase cells were harvested by centrifugation, washed twice mixture). The assay mixtures were shaken at 30°C in a water with 10 mM NaPO4-buffered HUM salts, suspended in 50 bath; 0.5-ml portions were removed when desired, vacuum mM HEPES (N-2-hydroxyethylpiperazine-N'-2-ethanesul- filtered through a 0.45-,um-pore-size nitrocellulose filters fonic acid; pH 7.5) with 0.2 mM dithiothreitol, and passed (TCM-450; Gelman Sciences, Inc., Ann Arbor, Mich.), and twice through a French press at 15,000 lb/in2. The crude washed with 10 ml of uptake medium without the carbon extract was then centrifuged at 44,000 x g for 20 min, and substrate. The filters were air dried, placed in 7-ml glass the supernatant fluid was assayed for the indicated enzymes. miniscintillation vials, and completely covered with 6 ml of Enzyme assays. Enzymes were assayed by published pro- Safety-Solve scintillation cocktail (Research Products Inter- cedures as follows: glucokinase (21), glucose-6-phosphate national Corp., Mount Prospect, Ill.). Radioactivity was dehydrogenase (21), fructokinase (10, 21), gluconokinase determined by using an LS6800 liquid scintillation counter (20), hexose diphosphatase (38), and succinate dehydroge- (Beckman Instruments, Inc., Fullerton, Calif.). The counts nase (15). from time zero were subtracted from each time reading to Fructose-1,6-bisphosphate aldolase and the ED enzyme correct for nonspecific binding of the substrate to the cells. were assayed by monitoring the reduction of NAD+ at 340 Transport rates were calculated from the linear portion of nm, using a glyceraldehyde-3-phosphate dehydrogenase- the curve. 3-phosphoglycerate phosphokinase-coupled assay system. The final reaction mixture contained 2.5 mM NaPO4, 0.2 RESULTS mM 3-NAD+, 1.66 mM ADP, and excess commercial glyc- Induction of pleomorphism. Figure 1A shows the typical eraldehyde-3-phosphate dehydrogenase-3-phosphoglycerate rod shape ofB. japonicum 1-110. The pleomorphic cells (Fig. phosphokinase in a total volume of 1 ml. For each assay, 1B) were induced within 38 h by 40 mM succinate and were additions were made to contain the following in the final re- typical of the altered morphology produced by several action mixture: for fructose-1,6-bisphosphate aldolase, 40 carboxylic acid substrates.
Recommended publications
  • Gene Symbol Gene Description ACVR1B Activin a Receptor, Type IB
    Table S1. Kinase clones included in human kinase cDNA library for yeast two-hybrid screening Gene Symbol Gene Description ACVR1B activin A receptor, type IB ADCK2 aarF domain containing kinase 2 ADCK4 aarF domain containing kinase 4 AGK multiple substrate lipid kinase;MULK AK1 adenylate kinase 1 AK3 adenylate kinase 3 like 1 AK3L1 adenylate kinase 3 ALDH18A1 aldehyde dehydrogenase 18 family, member A1;ALDH18A1 ALK anaplastic lymphoma kinase (Ki-1) ALPK1 alpha-kinase 1 ALPK2 alpha-kinase 2 AMHR2 anti-Mullerian hormone receptor, type II ARAF v-raf murine sarcoma 3611 viral oncogene homolog 1 ARSG arylsulfatase G;ARSG AURKB aurora kinase B AURKC aurora kinase C BCKDK branched chain alpha-ketoacid dehydrogenase kinase BMPR1A bone morphogenetic protein receptor, type IA BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) BRAF v-raf murine sarcoma viral oncogene homolog B1 BRD3 bromodomain containing 3 BRD4 bromodomain containing 4 BTK Bruton agammaglobulinemia tyrosine kinase BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast) BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) C9orf98 chromosome 9 open reading frame 98;C9orf98 CABC1 chaperone, ABC1 activity of bc1 complex like (S. pombe) CALM1 calmodulin 1 (phosphorylase kinase, delta) CALM2 calmodulin 2 (phosphorylase kinase, delta) CALM3 calmodulin 3 (phosphorylase kinase, delta) CAMK1 calcium/calmodulin-dependent protein kinase I CAMK2A calcium/calmodulin-dependent protein kinase (CaM kinase) II alpha CAMK2B calcium/calmodulin-dependent
    [Show full text]
  • (12) Patent Application Publication (10) Pub. No.: US 2014/0155567 A1 Burk Et Al
    US 2014O155567A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2014/0155567 A1 Burk et al. (43) Pub. Date: Jun. 5, 2014 (54) MICROORGANISMS AND METHODS FOR (60) Provisional application No. 61/331,812, filed on May THE BIOSYNTHESIS OF BUTADENE 5, 2010. (71) Applicant: Genomatica, Inc., San Diego, CA (US) Publication Classification (72) Inventors: Mark J. Burk, San Diego, CA (US); (51) Int. Cl. Anthony P. Burgard, Bellefonte, PA CI2P 5/02 (2006.01) (US); Jun Sun, San Diego, CA (US); CSF 36/06 (2006.01) Robin E. Osterhout, San Diego, CA CD7C II/6 (2006.01) (US); Priti Pharkya, San Diego, CA (52) U.S. Cl. (US) CPC ................. CI2P5/026 (2013.01); C07C II/I6 (2013.01); C08F 136/06 (2013.01) (73) Assignee: Genomatica, Inc., San Diego, CA (US) USPC ... 526/335; 435/252.3:435/167; 435/254.2: (21) Appl. No.: 14/059,131 435/254.11: 435/252.33: 435/254.21:585/16 (22) Filed: Oct. 21, 2013 (57) ABSTRACT O O The invention provides non-naturally occurring microbial Related U.S. Application Data organisms having a butadiene pathway. The invention addi (63) Continuation of application No. 13/101,046, filed on tionally provides methods of using Such organisms to produce May 4, 2011, now Pat. No. 8,580,543. butadiene. Patent Application Publication Jun. 5, 2014 Sheet 1 of 4 US 2014/O155567 A1 ?ueudos!SMS |?un61– Patent Application Publication Jun. 5, 2014 Sheet 2 of 4 US 2014/O155567 A1 VOJ OO O Z?un61– Patent Application Publication US 2014/O155567 A1 {}}} Hººso Patent Application Publication Jun.
    [Show full text]
  • Pyruvate-Phosphate Dikinase of Oxymonads and Parabasalia and the Evolution of Pyrophosphate-Dependent Glycolysis in Anaerobic Eukaryotes† Claudio H
    EUKARYOTIC CELL, Jan. 2006, p. 148–154 Vol. 5, No. 1 1535-9778/06/$08.00ϩ0 doi:10.1128/EC.5.1.148–154.2006 Copyright © 2006, American Society for Microbiology. All Rights Reserved. Pyruvate-Phosphate Dikinase of Oxymonads and Parabasalia and the Evolution of Pyrophosphate-Dependent Glycolysis in Anaerobic Eukaryotes† Claudio H. Slamovits and Patrick J. Keeling* Canadian Institute for Advanced Research, Botany Department, University of British Columbia, 3529-6270 University Boulevard, Vancouver, British Columbia V6T 1Z4, Canada Received 29 September 2005/Accepted 8 November 2005 In pyrophosphate-dependent glycolysis, the ATP/ADP-dependent enzymes phosphofructokinase (PFK) and pyruvate kinase are replaced by the pyrophosphate-dependent PFK and pyruvate phosphate dikinase (PPDK), respectively. This variant of glycolysis is widespread among bacteria, but it also occurs in a few parasitic anaerobic eukaryotes such as Giardia and Entamoeba spp. We sequenced two genes for PPDK from the amitochondriate oxymonad Streblomastix strix and found evidence for PPDK in Trichomonas vaginalis and other parabasalia, where this enzyme was thought to be absent. The Streblomastix and Giardia genes may be related to one another, but those of Entamoeba and perhaps Trichomonas are distinct and more closely related to bacterial homologues. These findings suggest that pyrophosphate-dependent glycolysis is more widespread in eukaryotes than previously thought, enzymes from the pathway coexists with ATP-dependent more often than previously thought and may be spread by lateral transfer of genes for pyrophosphate-dependent enzymes from bacteria. Adaptation to anaerobic metabolism is a complex process (PPDK), respectively (for a comparison of these reactions, see involving changes to many proteins and pathways of critical reference 21).
    [Show full text]
  • Characterization of a Eukaryotic Type Serine/Threonine Protein Kinase And
    Characterization of a eukaryotic type serine/threonine protein kinase and protein phosphatase of Streptococcus pneumoniae and identification of kinase substrates Linda Nova´ kova´ 1, Lenka Saskova´ 1, Petra Pallova´ 1, Jirˇı´ Janecˇek1, Jana Novotna´ 1, Alesˇ Ulrych1, Jose Echenique2, Marie-Claude Trombe3 and Pavel Branny1 1 Cell and Molecular Microbiology Division, Institute of Microbiology, Czech Academy of Sciences, Prague, Czech Republic 2 Departamento de Bioquı´mica Clı´nica, Facultad de Ciencias Quı´micas, Universidad Nacional de Co´ rdoba, Medina Allende esq Haya de la Torre, Ciudad Universitaria, Co´ rdoba, Argentina 3 Centre Hospitalo-Universitaire de Rangueil, Universite´ Paul Sabatier, Toulouse, France Keywords Searching the genome sequence of Streptococcus pneumoniae revealed the phosphoglucosamine mutase; presence of a single Ser ⁄ Thr protein kinase gene stkP linked to protein phosphoproteome; protein phosphatase; phosphatase phpP. Biochemical studies performed with recombinant StkP serine ⁄ threonine protein kinase; suggest that this protein is a functional eukaryotic-type Ser ⁄ Thr protein Streptococcus pneumoniae kinase. In vitro kinase assays and Western blots of S. pneumoniae subcellu- Correspondence lar fractions revealed that StkP is a membrane protein. PhpP is a soluble P. Branny, Cell and Molecular Microbiology protein with manganese-dependent phosphatase activity in vitro against a Division, Institute of Microbiology, Czech synthetic substrate RRA(pT)VA. Mutations in the invariant aspartate resi- Academy of Sciences, Vı´denˇ ska´ 1083, dues implicated in the metal binding completely abolished PhpP activity. 142 20 Prague 4, Czech Republic Autophosphorylated form of StkP was shown to be a substrate for PhpP. Fax: +420 2 41722257 These results suggest that StkP and PhpP could operate as a functional Tel: +420 2 41062658 E-mail: [email protected] pair in vivo.
    [Show full text]
  • Table 6. Putative Genes Involved in the Utilization of Carbohydrates in G
    Table 6. Putative genes involved in the utilization of carbohydrates in G. thermodenitrificans NG80-2 genome Carbohydrates* Enzymes Gene ID Glycerol Glycerol Kinase GT1216 Glycerol-3-phosphate dehydrogenase, aerobic GT2089 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase GT2153 Enolase GT3003 2,3-bisphosphoglycerate-independentphosphoglycerate mutase GT3004 Triosephosphate isomerase GT3005 3-phosphoglycerate kinase GT3006 Glyceraldehyde-3-phosphate dehydrogenase GT3007 Phosphoglycerate mutase GT1326 Pyruvate kinase GT2663 L-Arabinose L-arabinose isomerase GT1795 L-ribulokinase GT1796 L-ribulose 5-phosphate 4-epimerase GT1797 D-Ribose Ribokinase GT3174 Transketolase GT1187 Ribose 5-phosphate epimerase GT3316 D-Xylose Xylose kinase GT1756 Xylose isomerase GT1757 D-Galactose Galactokinase GT2086 Galactose-1-phosphate uridyltransferase GT2084 UDP-glucose 4-epimerase GT2085 Carbohydrates* Enzymes Gene ID D-Fructose 1-phosphofructokinase GT1727 Fructose-1,6-bisphosphate aldolase GT1805 Fructose-1,6-bisphosphate aldolase type II GT3331 Triosephosphate isomerase GT3005 D-Mannose Mannnose-6 phospate isomelase GT3398 6-phospho-1-fructokinase GT2664 D-Mannitol Mannitol-1-phosphate dehydrogenase GT1844 N-Acetylglucosamine N-acetylglucosamine-6-phosphate deacetylase GT2205 N-acetylglucosamine-6-phosphate isomerase GT2204 D-Maltose Alpha-1,4-glucosidase GT0528, GT1643 Sucrose Sucrose phosphorylase GT3215 D-Trehalose Alpha-glucosidase GT1643 Glucose kinase GT2381 Inositol Myo-inositol catabolism protein iolC;5-dehydro-2- GT1807 deoxygluconokinase
    [Show full text]
  • Evolving a New Efficient Mode of Fructose Utilization For
    fbioe-09-669093 May 22, 2021 Time: 22:55 # 1 ORIGINAL RESEARCH published: 28 May 2021 doi: 10.3389/fbioe.2021.669093 Evolving a New Efficient Mode of Fructose Utilization for Improved Bioproduction in Corynebacterium glutamicum Irene Krahn1, Daniel Bonder2, Lucía Torregrosa-Barragán2, Dominik Stoppel1, 1 3 1 3,4 Edited by: Jens P. Krause , Natalie Rosenfeldt , Tobias M. Meiswinkel , Gerd M. Seibold , Pablo Ivan Nikel, Volker F. Wendisch1 and Steffen N. Lindner1,2* Novo Nordisk Foundation Center 1 2 for Biosustainability (DTU Biosustain), Chair of Genetics of Prokaryotes, Faculty of Biology and CeBiTec, Bielefeld University, Bielefeld, Germany, Systems 3 Denmark and Synthetic Metabolism, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany, Institute of Biochemistry, University of Cologne, Cologne, Germany, 4 Department of Biotechnology and Biomedicine, Technical Reviewed by: University of Denmark, Lyngby, Denmark Stephan Noack, Julich-Forschungszentrum, Helmholtz-Verband Deutscher Fructose utilization in Corynebacterium glutamicum starts with its uptake and Forschungszentren (HZ), Germany concomitant phosphorylation via the phosphotransferase system (PTS) to yield Fabien Létisse, UMR 5504 Laboratoire d’Ingénierie intracellular fructose 1-phosphate, which enters glycolysis upon ATP-dependent des Systèmes Biologiques et des phosphorylation to fructose 1,6-bisphosphate by 1-phosphofructokinase. This is known Procédés (LISBP), France to result in a significantly reduced oxidative pentose phosphate pathway (oxPPP) flux *Correspondence: ∼ ∼ Steffen N. Lindner on fructose ( 10%) compared to glucose ( 60%). Consequently, the biosynthesis of [email protected] NADPH demanding products, e.g., L-lysine, by C. glutamicum is largely decreased when fructose is the only carbon source. Previous works reported that fructose Specialty section: This article was submitted to is partially utilized via the glucose-specific PTS presumably generating fructose 6- Synthetic Biology, phosphate.
    [Show full text]
  • Engineering Zymomonas Mobilis for the Production of Biofuels and Other Value-Added Products
    © 2015 Kori Lynn Dunn ENGINEERING ZYMOMONAS MOBILIS FOR THE PRODUCTION OF BIOFUELS AND OTHER VALUE-ADDED PRODUCTS BY KORI LYNN DUNN DISSERTATION Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Chemical Engineering in the Graduate College of the University of Illinois at Urbana-Champaign, 2015 Urbana, Illinois Doctoral Committee: Associate Professor Christopher V. Rao, Chair Associate Professor Yong-Su Jin Associate Professor Hyunjoon Kong Associate Professor Mary Kraft Abstract Zymomonas mobilis is a promising organism for lignocellulosic biofuel production as it can efficiently produce ethanol from simple sugars using unique metabolic pathways. Z. mobilis displays what is known as the “uncoupled growth” phenomenon, meaning cells will rapidly convert sugars to ethanol regardless of their energy requirements for growth. This makes Z. mobilis attractive not only for ethanol production, but for alternative product synthesis as well. One limitation of Z. mobilis for cellulosic ethanol production is that this organism cannot natively ferment the pentose sugars, like xylose and arabinose, which are present in lignocellulosic hydrolysates. While it has been engineered to do so, the fermentation rates of these sugars are still extremely low. In this work, we have investigated sugar transport as a possible bottleneck in the fermentation of xylose by Z. mobilis. We showed that transport limits xylose fermentations in this organism, but only when the starting sugar concentration is high. To discern additional bottlenecks in pentose fermentations by Z. mobilis, we then used adaptation and high-throughput sequencing to pinpoint genetic mutations responsible for improved growth phenotypes on these sugars. We found that the transport of both xylose and arabinose through the native sugar transporter, Glf, limits pentose fermentations in Z.
    [Show full text]
  • Development and Control of Intestinal and Hepatic Fructokinase
    INTESTINAL AND HEPATIC FRUCTOKINASE 765 expansion on intrarenal distribution of plasma flow in the dog. 42. The authors acknowledge the expert assistance of Mrs. Ann- Amer. J. Physiol., 223: 125 (1972). Christine Eklof and Mr. Gothe Carlebjork. 37. West, G. R., Smith, H. W., and Chasis, H.: Glomerular filtration 43. This research was supported by Grant no. B74-19X-3644-03Bfrom rate, effective renal blood flow and maximal tubular excretory the Swedish Medical Research Council and by a grant from the capacity in infancy. J. Pediat., 32: 10 (1948). Prenatal Research Funds of Expressen. 38. Laevosan Gesellschaft, Linz, Austria. 44. Requests for reprints should be addressed to: P. Herin, M.D., 39. 3M Company, St. Paul, Minn. Karolinski Institutet, Pediatriska Kliniken, St: Goran's Barn- 40. Sage Instruments, Inc., White Plains, N. Y. liniker, Box 12500, 112 81 Stockholm, Sweden. 41. Gilford Instrument Labs., Inc., Oberlin, Ohio. 45. Accepted for publication April 4, 1974. Copyright O 1974 International Pediatric Research Foundation, Inc. Printed in U.S.A. Pediat. Res. 8: 765-770 (1974) Developmental biochemistry intestine fetus liver fruct okinase Development and Control of Intestinal and Hepatic Fructokinase RICHARD J. GRAND,(^') MARIA I. SCHAY, AND STEPHANIE JAKSINA Department of Pediatrics, Harvard Medical School, and the Department of Medicine (Division of Clinical Nutrition), the Children's Hospital Medical Center, Boston, Massachusetts, USA Extract experimental animals (1, 2, 20, 26) and in man (I 5), although the mechanism of this regulation has not yet been elucidated. The patterns of development of intestinal and hepatic In the rat, adrenalectomy prevents the rise in the activity of fructokinase have been studied in the rat, in the rabbit, and in the hepatic enzyme expected after fructose feeding; hydro- man, and information regarding the mechanism of control of cortisone administered to the intact animal greatly enhances this enzyme in mature organs has been obtained.
    [Show full text]
  • Regulation of Fructose-6-Phosphate 2-Kinase By
    Proc. Natt Acad. Sci. USA Vol. 79, pp. 325-329, January 1982 Biochemistry Regulation of fructose-6-phosphate 2-kinase by phosphorylation and dephosphorylation: Possible mechanism for coordinated control of glycolysis and glycogenolysis (phosphofructokinase) EISUKE FURUYA*, MOTOKO YOKOYAMA, AND KOSAKU UYEDAt Pre-Clinical Science Unit of the Veterans Administration Medical Center, 4500 South Lancaster Road, Dallas, Texas 75216; and Biochemistry Department of the University ofTexas Health Science Center, 5323 Harry Hines Boulevard, Dallas, Texas 75235 Communicated by Jesse C. Rabinowitz, September 28, 1981 ABSTRACT The kinetic properties and the control mecha- Fructose 6-phosphate + ATP nism of fructose-6-phosphate 2-kinase (ATP: D-fructose-6-phos- -3 Fructose + ADP. [1] phate 2-phosphotransferase) were investigated. The molecular 2,6-bisphosphate weight of the enzyme is -100,000 as determined by gel filtration. The plot of initial velocity versus ATP concentration is hyperbolic We have shown that the administration of extremely low con- with a K. of 1.2 mM. However, the plot of enzyme activity as a centrations of glucagon (0.1 fM) or high concentrations of epi- function of fructose 6-phosphate is sigmoidal. The apparent K0.5 nephrine (10 ,uM) to hepatocytes results in inactivation offruc- for fructose 6-phosphate is 20 ,IM. Fructose-6-phosphate 2-kinase tose-6-phosphate 2-kinase and concomitant decrease in the is inactivated by -the catalytic subunit of cyclic AMP-dependent fructose 2,6-bisphosphate level (12). These results, as well as protein kinase, and the inactivation is closely correlated with phos- more recent data using Ca2+ and the Ca2+ ionophore A23187 phorylation.
    [Show full text]
  • GLUCOSE ISOMERASE from an ARTHROBACTER SPECIES By
    GLUCOSE ISOMERASE FROM AN ARTHROBACTER SPECIES by Christopher Andrew Smith A dissertation submitted to the University of London in candidature for the degree of Doctor of Philosophy. Imperial College, December 1979 University of London, London. SW7 2AZ Abstract C.A. Smith Glucose Isomerase from an Arthrobacter Species This dissertation describes the investigation of possible means of increasing the yield of glucose isomerase from a species of Arthro- bacter. Glucose isomerase catalyses the interconversion of D-glucose and D-fructose, although its natural substrate is D-xylose. The enzyme is of importance in the production of high fructose syrups for use as sweeteners in the food industry. The possibility of manipulating the normal pathways of glucose metabolism by mutation to make the enzymic conversion of glucose to fructose an essential step in glucose metabolism was explored. Since the activity of the enzyme towards glucose is low under physiological conditions, it would then be rate-limiting for growth on glucose. This would enable the selection of mutants producing either elevated levels of the wild type enzyme or an enzyme of increased specificity for glucose, by virtue of their faster growth in glucose limited chemo- stat culture. Evidence was obtained that this approach was not like- ly to be successful in the case of Arthrobacter. No activity able to phosphorylate intracellular fructose could be detected. The enzyme was purified from a strain constitutive for its syn- thesis and was found already to account for at least ten percent of the soluble cell protein. The activity of the purified enzyme towards various potential substrates was determined, to evaluate the possibility of using grat- uitous substrates other than glucose to select for mutants with elev- ated levels of the isomerase.
    [Show full text]
  • 12) United States Patent (10
    US007635572B2 (12) UnitedO States Patent (10) Patent No.: US 7,635,572 B2 Zhou et al. (45) Date of Patent: Dec. 22, 2009 (54) METHODS FOR CONDUCTING ASSAYS FOR 5,506,121 A 4/1996 Skerra et al. ENZYME ACTIVITY ON PROTEIN 5,510,270 A 4/1996 Fodor et al. MICROARRAYS 5,512,492 A 4/1996 Herron et al. 5,516,635 A 5/1996 Ekins et al. (75) Inventors: Fang X. Zhou, New Haven, CT (US); 5,532,128 A 7/1996 Eggers Barry Schweitzer, Cheshire, CT (US) 5,538,897 A 7/1996 Yates, III et al. s s 5,541,070 A 7/1996 Kauvar (73) Assignee: Life Technologies Corporation, .. S.E. al Carlsbad, CA (US) 5,585,069 A 12/1996 Zanzucchi et al. 5,585,639 A 12/1996 Dorsel et al. (*) Notice: Subject to any disclaimer, the term of this 5,593,838 A 1/1997 Zanzucchi et al. patent is extended or adjusted under 35 5,605,662 A 2f1997 Heller et al. U.S.C. 154(b) by 0 days. 5,620,850 A 4/1997 Bamdad et al. 5,624,711 A 4/1997 Sundberg et al. (21) Appl. No.: 10/865,431 5,627,369 A 5/1997 Vestal et al. 5,629,213 A 5/1997 Kornguth et al. (22) Filed: Jun. 9, 2004 (Continued) (65) Prior Publication Data FOREIGN PATENT DOCUMENTS US 2005/O118665 A1 Jun. 2, 2005 EP 596421 10, 1993 EP 0619321 12/1994 (51) Int. Cl. EP O664452 7, 1995 CI2O 1/50 (2006.01) EP O818467 1, 1998 (52) U.S.
    [Show full text]
  • Carbohydrate Kinases: a Conserved Mechanism Across Differing Folds
    catalysts Review Carbohydrate Kinases: A Conserved Mechanism Across Differing Folds Sumita Roy 1, Mirella Vivoli Vega 2 and Nicholas J. Harmer 1,* 1 Living Systems Institute, University of Exeter, Stocker Road, Exeter EX4 4QD, UK; [email protected] 2 Department of Biomedical Experimental and Clinical Sciences, University of Florence, Viale Morgagni 50, 50134 Florence, Italy; mirella.vivoli@unifi.it * Correspondence: [email protected]; Tel.: +44-1392-725179 Received: 2 November 2018; Accepted: 21 December 2018; Published: 2 January 2019 Abstract: Carbohydrate kinases activate a wide variety of monosaccharides by adding a phosphate group, usually from ATP. This modification is fundamental to saccharide utilization, and it is likely a very ancient reaction. Modern organisms contain carbohydrate kinases from at least five main protein families. These range from the highly specialized inositol kinases, to the ribokinases and galactokinases, which belong to families that phosphorylate a wide range of substrates. The carbohydrate kinases utilize a common strategy to drive the reaction between the sugar hydroxyl and the donor phosphate. Each sugar is held in position by a network of hydrogen bonds to the non-reactive hydroxyls (and other functional groups). The reactive hydroxyl is deprotonated, usually by an aspartic acid side chain acting as a catalytic base. The deprotonated hydroxyl then attacks the donor phosphate. The resulting pentacoordinate transition state is stabilized by an adjacent divalent cation, and sometimes by a positively charged protein side chain or the presence of an anion hole. Many carbohydrate kinases are allosterically regulated using a wide variety of strategies, due to their roles at critical control points in carbohydrate metabolism.
    [Show full text]