Pharmacological Research 105 (2016) 13–21
Contents lists available at ScienceDirect
Pharmacological Research
j ournal homepage: www.elsevier.com/locate/yphrs
Dynamic mass redistribution reveals diverging importance of
PDZ-ligands for G protein-coupled receptor pharmacodynamics
a b b b
Nathan D. Camp , Kyung-Soon Lee , Allison Cherry , Jennifer L. Wacker-Mhyre ,
b b b b
Timothy S. Kountz , Ji-Min Park , Dorathy-Ann Harris , Marianne Estrada ,
b b a b,∗
Aaron Stewart , Nephi Stella , Alejandro Wolf-Yadlin , Chris Hague
a
Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA
b
Department of Pharmacology, University of Washington School of Medicine, Seattle, WA 98195, USA
a r t i c l e i n f o a b s t r a c t
Article history: G protein-coupled receptors (GPCRs) are essential membrane proteins that facilitate cell-to-cell
Received 19 October 2015
communication and co-ordinate physiological processes. At least 30 human GPCRs contain a Type I PSD-
Received in revised form
95/DLG/Zo-1 (PDZ) ligand in their distal C-terminal domain; this four amino acid motif of X-[S/T]-X-[]
28 December 2015
sequence facilitates interactions with PDZ domain-containing proteins. Because PDZ protein interactions
Accepted 1 January 2016
have profound effects on GPCR ligand pharmacology, cellular localization, signal-transduction effector
Available online 7 January 2016
coupling and duration of activity, we analyzed the importance of Type I PDZ ligands for the function of 23
full-length and PDZ-ligand truncated ( PDZ) human GPCRs in cultured human cells. SNAP-epitope tag
Keywords:
polyacrylamide gel electrophoresis revealed most Type I PDZ GPCRs exist as both monomers and mul-
G protein-coupled receptor
timers; removal of the PDZ ligand played minimal role in multimer formation. Additionally, SNAP-cell
Label-free signaling
PDZ domain surface staining indicated removal of the PDZ ligand had minimal effects on plasma membrane localiza-
Pharmacology tion for most GPCRs examined. Label-free dynamic mass redistribution functional responses, however,
revealed diverging effects of the PDZ ligand. While no clear trend was observed across all GPCRs tested or
even within receptor families, a subset of GPCRs displayed diminished agonist efficacy in the absence of
a PDZ ligand (i.e. HT2RB, ADRB1), whereas others demonstrated enhanced agonist efficacies (i.e. LPAR2,
SSTR5). These results demonstrate the utility of label-free functional assays to tease apart the contri-
butions of conserved protein interaction domains for GPCR signal-transduction coupling in cultured
cells.
© 2016 Elsevier Ltd. All rights reserved.
1. Introduction perform their designated functions, GPCRs must specifically inter-
act with key proteins, the most thoroughly characterized being
G-protein coupled receptors (GPCRs) are essential for cell-to- the heterotrimeric G-proteins (G␣,  and ␥), which transmit the
cell communication and regulation of physiological events. To energy of agonist-GPCR binding to cellular response [1]. Interest-
ingly, proteomic (i.e. affinity purification/mass spectrometry) and
yeast-based (i.e. 2-hybrid) screening approaches developed over
the last decade permitted high-throughput, unbiased identifica-
Abbreviations: ADRA1D, ␣1Dadrenergic receptor; ADRA2B, ␣2Badrenergic
tion of numerous novel GPCR-interacting proteins [2,3]. Indeed,
receptor; ADRB1, 1-adrenergic receptor; ADRB2, 2adrenergic receptor; C3AR1,
Complement Component 3a Receptor 1; CXCR1, chemokine receptor 1; CXCR2, GPCRs are expressed as intricate macromolecular complexes in cell
chemokine receptor 2; CXCR3, chemokine receptor 3; CXCR5, chemokine recep-
membranes, with the GPCR acting as the central hub of signaling
tor 5; GALR1, galanin receptor 1; HRH3, histamine receptor H3; HTR2A,
networks; a dynamic scaffold that temporally and spatially directs
5-hydroxytryptamine (serotonin) receptor 2A; HTR2B, 5-hydroxytryptamine (sero-
cellular traffic. With this next era of GPCR molecular pharmacol-
tonin) receptor 2B; HTR2C, 5-hydroxytryptamine (serotonin) receptor 2C; LPAR2,
lysophosphatidic acid receptor 2; MCHR2, Melanin-Concentrating Hormone Recep- ogy comes the promise of innovative approaches to drug discovery.
tor 2; P2RY1, purinergic receptor P2Y1; P2RY1, 2purinergic receptor P2Y12; Targeting interaction interfaces between GPCRs and associated
S1PR2, sphingosine-1-phosphate receptor 2; SSTR1, somatostatin receptor 1; SSTR2,
proteins may permit molecular tweaking of distinct GPCR signal-
somatostatin receptor 2; SSTR3, somatostatin receptor 3; SSTR4, somatostatin
ing events, simultaneously inhibiting signaling events that are toxic
receptor 4; SSTR5, somatostatin receptor 5.
∗ whilst enhancing those that are beneficial. This endeavor is in
Corresponding author at: 1959 Pacific Ave. Box 357280 Seattle, WA, 98195, USA.
E-mail address: [email protected] (C. Hague). its infancy, requiring thorough identification of GPCR interacting
http://dx.doi.org/10.1016/j.phrs.2016.01.003
1043-6618/© 2016 Elsevier Ltd. All rights reserved.
14 N.D. Camp et al. / Pharmacological Research 105 (2016) 13–21
Fig. 1. SNAP-PAGE of WT and PDZ-GPCRs. N-terminal SNAP-tagged GPCRs were transfected into HEK293T cells, lysed, incubated with BG 782 and run on PAGE. Full length
(WT) and C-terminal Type I PDZ ligand truncated ( PDZ) GPCRs were analyzed.
Fig. 2. Propranolol functional affinity for antagonizing isoproterenol-stimulated DMR responses in HEK293T cells expressing ADRB1. a, DMR responses stimulated by 3 M
isoproterenol in the absence and presence of increasing concentrations of the -adrenergic receptor antagonist propranolol in 1-adrenergic receptor (ADRB1) transfected
HEK293T cells. b, Isoproterenol-stimulated DMR concentration-response curves in the absence and presence of propranolol. c, Schild plot analysis of data in (B). Data are the
mean ± SEM of n = 4.
proteins with cell-type accuracy, and identifying divergent down- an overall increase of cellular mass toward the cell membrane,
stream signaling cascades linked to individual GPCR interaction whereas a negative response is indicative of cellular mass mov-
modules. ing away from the membrane [7]. Similar to classic organ-tissue
Thus far, assessing how interacting proteins contribute to bath assays, which in effect are a summation of all the signaling
GPCR function has been limited to reductionist outputs: second events linking GPCR-stimulation to a contraction/relaxation event,
2+
messenger formation (i.e. cAMP/cGMP, Ca , ERK1/2), enzyme DMR responses represent holistic changes in cellular mass and per-
activity (i.e. phospholipase C, protein kinase A/C), biolumines- mit divergent GPCR signaling cascades to be analyzed without the
cence/fluorescence energy transfer (BRET/FRET), cellular localiza- need of a cell reporter. This is particularly useful for directly com-
tion with high resolution microscopy and arrestin-association. paring GPCRs that couple to varying G proteins such as G␣s (i.e.

Although informative, these assays are narrow in scope, each -adrenergic receptors), G␣i (i.e. ␣2-adrenergic receptors) or G␣q
unable to identify unknown components of GPCR signaling net- (i.e. ␣1-adrenergic receptors) [6].
works. Label-free dynamic mass redistribution (DMR) technology Remarkably, at least 30 human GPCRs contain putative Type
represents an innovative approach to analyze complex GPCR sig- I PSD-95/DLG/Zo-1 (PDZ) ligands on their distal C-terminus with
naling networks [4–6]. This assay involves passing polarized light amino acid sequence X-[S/T]-X-[] [8]. This small protein-protein
through the glass bottom of a biosensor microtiter plate seeded interaction domain permits GPCRs to associate with one or more of
with cells, then measuring shifts in the wavelength of reflected the ∼180 PDZ domain-containing proteins encoded in the human
light over time. The shifts in wavelength are due to changes in genome. Once bound, PDZ-proteins may modulate GPCR phar-
intracellular mass near the membrane in response to exogenous macodynamic properties via scaffolding effector proteins in close
stimulation, such as an agonist. As small as 1 picomter (pm) proximity, organizing GPCR complexes as discrete microdomains in
changes in wavelength can be reliably detected, and the direc- cells, or linking GPCRs to non-canonical signaling events [2,3]. We
tion of the overall change in cellular mass is indicated by whether previously demonstrated the Type I PDZ ␣1D-adrenergic receptor
the response is positive or negative. A positive response indicates (AR) forms a macromolecular complex with PDZ-proteins scrib-
N.D. Camp et al. / Pharmacological Research 105 (2016) 13–21 15
Fig. 3. Epic DMR responses diminished by removal of the GPCR C-terminal PDZ ligand. Epic DMR responses in HEK293T cells expressing WT (a) or PDZ (b) 1-adrenergic
receptor (ADRB1); WT (c) or PDZ (d) chemokine type I receptor (CXCR1). Data are the mean ± SEM (n = 4). ISO = isoproterenol; IL–8 = interleukin-8.
ble (SCRIB) and multiple isoforms of syntrophin (SNTA, SNTB1, sphingosine-1-phosphate (1370) and galanin 1–30 (1179) from
and SNTB2), which impart functionality and distinct cellular local- Tocris Bioscience.
ization to the receptor [9–13]. The specific contributions of each SNAP-surface 782 substrate from New England Biolabs
PDZ protein for ADRA1D function and agonist efficacy in human (S9142S). Topro-3 iodide (T3605) is from Life Technologies. Anti-
cells was determined by DMR technology. SCRIB and syntrophins HA mouse mAb (6E2, #2367) from Cell Signaling. IRdye 680 goat
bind C-terminal ADRA1D PDZ-ligands on discrete protomers within antimouse IgG and IRdye 800cw goat antirabbit IgG from Li-Cor.
ADRA1D homodimers/oligomers, and in doing so, differentially reg-
ulate agonist efficacy [13]. 2.2. Cell culture and reagents
Given the importance of PDZ-protein interactions for GPCR
function, we subjected 23 human Type I PDZ GPCRs to label-free Human embryonic kidney (HEK) 293T cells were grown in Dul-
DMR assays in human cells with and without PDZ ligand trunca- becco’s modified Eagle’s medium (DMEM) supplemented with 10%
tion. Although no definitive role of the PDZ ligand was identified fetal bovine serum and 2 mM l-glutamine. Cells were transfected
across all GPCRs tested or even within GPCR families, we identified with 1 mg/ml polyethylenimine (PEI) and used 24–48 h post trans-
9 GPCRs for which the PDZ ligand differentially regulated receptor fection.
activation.
2.3. SNAP cell surface assays
5
×
2. Materials and methods HEK293T cells were seeded in 6 well plates at 8 10 cells/well.
Cells were transfected with SNAP-tagged cDNA constructs/PEI
2.1. Plasmids, chemicals and antibodies and replated in 96 well black optical bottom cell culture plates.
Cell density was ∼90% confluency prior to assay commencement.
Human GPCR cDNAs were purchased from the Missouri S&T SNAP-Surface 782 substrate was diluted in DMEM to designated
◦
cDNA resource center (cdna.org) or cloned from human brain cDNA concentrations and incubated at 37 C/5% CO2 for 30 min. Cells
library (kindly provided by Prof. Ning Zheng, HHMI, University were washed, fixed with 4% paraformaldehyde, then incubated
of Washington Department of Pharmacology). cDNAs were sub- with 1:10000 nuclear stain TOPRO-3 to normalize for cell num-
cloned into pSNAPf/pCLIPf (New England Biolabs) using In-Fusion ber. Plates were analyzed with the LI-COR Odyssey Scanner (Li-Cor
HD cloning technology (Clontech). Biotechnology) and signal intensity quantified.
GPCR agonists (−)-isoproterenol hydrochloride (I6504),
5-hydroxytryptamine hydrochloride (H9523), clonidine 2.4. SNAP-PAGE
hydrochloride (C7897), somatostatin (S9129), interleukin-8
(CXCL8, SRP3098), histamine dihydrochloride (H7250), UTP HEK293T cells were transfected with SNAP-tagged proteins.
(U6875) and benzeneacetamide (C4494) were purchased 48 h after transfection, cells were lysed with 50 mM Tris–HCl,
17
from Sigma; [Ala ]-melanin concentrating hormone (3434), 150 mM NaCl, 1% NP40, and 0.1% Tween 20 buffer. Final concen-
16 N.D. Camp et al. / Pharmacological Research 105 (2016) 13–21
Table 1
tration of 0.5 M BG-782 substrate and 1 mM DTT were added to
SNAP cell surface expression of WT and PDZ GPCRs. Cell surface expression of wild
lysates for substrate binding reaction and samples were incubated
◦ type (WT) and PDZ-ligand truncated ( PDZ) GPCRs was quantified in HEK293T cells
for 30 min @37 C in the dark. Samples were then run on SDS-PAGE
using SNAP cell impermeable substrate BG782. Data are expressed as% of HTR2A
without boiling and gels were imaged using LI-COR Odyssey Scan- CSE. Data were analyzed with GraphPad Prism and are expressed as mean ± SEM
ner. (n = 3–4).
GPCRgene name WT CSE(%WT HTR2A) PDZ CSE (%WT HTR2A)
2.5. Label-free Dynamic Mass Redistribution (DMR) assays
ADRA1D 1.39 ± 0.645 3.57 ± 0.99
ADRA2B 7.26 ± 0.91 6.87 ± 0.97
± ±
HEK293T cells were seeded at ∼500k/well in Corning Epic sensor ADRB1 22.72 4.41 25.03 2.76
±
±
ADRB2 9.77 0.97 11.21 2.27
microplates and cultured for 24 h. Cells were washed 3x with HBSS
◦ HTR2A 100 ± 1.85 75.44 ± 6.12
buffer and transferred to Corning Epic BT reader @37 C. Baseline
HTR2B 30.72 ± 6.73 34.86 ± 5.77
DMR measurements were recorded for 1 h. Compounds were added
HTR2C 22.71 ± 4.40 25.02 ± 2.76
± ±
with the Sorenson Biosciences 96-well Benchtop Pipettor and ago- SSTR1 22.88 2.96 21.08 4.05
SSTR2 28.53 ± 7.94 29.01 ± 5.85
nist DMR responses were recorded for 1 h. Data were exported to
± ±
SSTR3 58.46 6.51 46.26 12.16
Microsoft Excel using Epic Analyzer Software. DMR background
SSTR4 33.7 ± 3.50 32.80 ± 2.63
responses (buffer triggered responses) were subtracted from all
SSTR5 19.98 ± 3.82 27.69 ± 8.92
datasets, as they are thought to occur as a result of (1) buffer CXCR1 56.27 ± 2.89 53.88 ± 3.43
±
±
bulk refractive index difference between the assay buffer and com- CXCR2 23.28 2.20 25.68 4.90
CXCR3 15.48 ± 6.10 14.7 ± 3.27
pound solution, (2) temperature mismatch or (3) a mechanical
CXCR5 20.1 ± 1.02 17.6 ± 4.41
issue resulting from movement of the Epic 384 well plate between
GALR1 29.11 ± 1.41 23.06 ± 2.22
the Epic BT apparatus and the Sorenson Pipettor, as previously
HRH3 37.99 ± 5.99 52.90 ± 6.03
± ±
described in [7]. Error bars are displayed in agonist-concentration P2RY1 86.61 3.83 78.81 8.78
P2RY12 17.88 ± 3.19 20.93 ± 2.08
response curves, and not Epic DMR traces, to improve figure clarity.
±
±
MCHR2 3.38 7.79 0.532 8.36
For Schild Plot analysis, data were analyzed using linear regression
C3AR1 5.65 ± 0.96 1.16 ± 0.39
analysis using the method first described in [14].
LPAR2 58.82 ± 4.74 68.05 ± 6.39
S1PR2 11.49 ± 0.67 14.81 ± 7.79
2.6. Data analysis
CXCR3 as compared to the WT receptor. These observations sug-
Data were analyzed with GraphPad Prism 6 software and
gest that in several instances, the PDZ ligand regulates expression
expressed mean ±SEM. Differences in agonist-stimulated DMR
levels and cleavage events involved in receptor processing.
responses were tested for significance using student’s t-test
(p < 0.05).
3.2. Role of Type I PDZ ligands for GPCR membrane localization
3. Results We next employed SNAP cell surface expression assays to
determine if PDZ-ligand truncation significantly impacted the abil-
3.1. Importance of type I PDZ ligands for GPCR protein expression. ity of GPCRs to be trafficked to the plasma membrane. WT and