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Phylogenetic Analyses of Juniperus Species in Turkey and Their Relations with Other Juniperus Based on Cpdna Supervisor: Prof
MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA A THESIS SUBMITTED TO THE GRADUATE SCHOOL OF NATURAL AND APPLIED SCIENCES OF MIDDLE EAST TECHNICAL UNIVERSITY BY AYSUN DEMET GÜVENDİREN IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN BIOLOGY APRIL 2015 Approval of the thesis MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA submitted by AYSUN DEMET GÜVENDİREN in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Department of Biological Sciences, Middle East Technical University by, Prof. Dr. Gülbin Dural Ünver Dean, Graduate School of Natural and Applied Sciences Prof. Dr. Orhan Adalı Head of the Department, Biological Sciences Prof. Dr. Zeki Kaya Supervisor, Dept. of Biological Sciences METU Examining Committee Members Prof. Dr. Musa Doğan Dept. Biological Sciences, METU Prof. Dr. Zeki Kaya Dept. Biological Sciences, METU Prof.Dr. Hayri Duman Biology Dept., Gazi University Prof. Dr. İrfan Kandemir Biology Dept., Ankara University Assoc. Prof. Dr. Sertaç Önde Dept. Biological Sciences, METU Date: iii I hereby declare that all information in this document has been obtained and presented in accordance with academic rules and ethical conduct. I also declare that, as required by these rules and conduct, I have fully cited and referenced all material and results that are not original to this work. Name, Last name : Aysun Demet GÜVENDİREN Signature : iv ABSTRACT MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA Güvendiren, Aysun Demet Ph.D., Department of Biological Sciences Supervisor: Prof. -
Southern California Endemic Habitats
Southern California Endemic Habitats Climate Change Vulnerability Assessment Synthesis An Important Note About this Document: This document represents an initial evaluation of vulnerability for endemic habitats based on expert input and existing information. Specifically, the information presented below comprises habitat expert vulnerability assessment survey results and comments, peer- review comments and revisions, and relevant references from the literature. The aim of this document is to expand understanding of habitat vulnerability to changing climate conditions, and to provide a foundation for developing appropriate adaptation responses. Executive Summary In this assessment, endemic habitats are considered as one collective habitat grouping, but directed comments are provided for the following systems of interest:1 serpentine, carbonate, gabbro, pebble plains, and clay lens. In general, these endemic habitats feature specialized vegetative communities that are adapted to Photo by California Dept. of Fish and Wildlife (CC-BY-2.0) harsh and unique conditions derived, in part, from parent Photo by California Dept. of Fish and Wildlife (CC-BY-2.0) soil material (Center for Biological Diversity [CBD] 2002; Damschen et al. 2012; Safford and Harrison 2008; Stephenson and Calcarone 1999; U.S. Forest Service [USFS] 2005). Endemic habitats are typically limited in distribution, occupying distinct areas within the southern California study area. The relative vulnerability of endemic habitats in southern California was evaluated to be moderate2 -
Relationship of Tecate Cypress Distribution to Soil Types
Loma Linda University TheScholarsRepository@LLU: Digital Archive of Research, Scholarship & Creative Works Loma Linda University Electronic Theses, Dissertations & Projects 6-1980 Relationship of Tecate Cypress Distribution to Soil Types David E. Stottlemyer Follow this and additional works at: https://scholarsrepository.llu.edu/etd Part of the Biology Commons, and the Soil Science Commons Recommended Citation Stottlemyer, David E., "Relationship of Tecate Cypress Distribution to Soil Types" (1980). Loma Linda University Electronic Theses, Dissertations & Projects. 926. https://scholarsrepository.llu.edu/etd/926 This Thesis is brought to you for free and open access by TheScholarsRepository@LLU: Digital Archive of Research, Scholarship & Creative Works. It has been accepted for inclusion in Loma Linda University Electronic Theses, Dissertations & Projects by an authorized administrator of TheScholarsRepository@LLU: Digital Archive of Research, Scholarship & Creative Works. For more information, please contact [email protected]. Abstract RELATIONSHIP OF TECATE CYPRESS DISTRIBUTION TO SOIL TYPES by David E. Stottlemyer The Tecate Cypress (Cupressus forbesii Jeps.) is a gymnosperm tree of limited distribution. To determine if soil is an influencing factor in its distribution, the soil characteristics of a Tecate Cypress grove in the Santa Ana Mountains of Orange County, California, were compared with soils from neighboring communities and other Tecate Cypress groves. • Soil samples were analyzed for texture, saturation percent, pH, and electrical conductivity. Tests were also run for nutrients such as nitrogen, phosphorus, potassium, calcium, magnesium, iron, manganese, copper and zinc. Results seem to indicate that the Tecate Cypress soils are: 1) significantly more acidic than the soils of surrounding chaparral communities, and 2) significantly lower in nutrients than the soils of big-cone Douglas fir, mixed conifer, knob cone pine and oak woodlands. -
Cupressus Forbesii) Roland C
Rhode Island College Digital Commons @ RIC Faculty Publications Winter 12-2006 Association Between Fire Return Interval and Population Dynamics in Four California Populations of Tecate Cypress (Cupressus Forbesii) Roland C. de Gouvenain Rhode Island College, [email protected] Ali M. Ansary Chapman University Follow this and additional works at: https://digitalcommons.ric.edu/facultypublications Part of the Environmental Sciences Commons Citation de Gouvenain, R. C., & Ansary, A. M. (2006). Association between fire return interval and population dynamics in four California populations of Tecate cypress (Cupressus forbesii). The Southwestern Naturalist, 51(4), 447-454. https://doi.org/10.1894/ 0038-4909(2006)51[447:abfria]2.0.co;2 This Article is brought to you for free and open access by Digital Commons @ RIC. It has been accepted for inclusion in Faculty Publications by an authorized administrator of Digital Commons @ RIC. For more information, please contact [email protected]. ASSOCIATION BETWEEN FIRE RETURN INTERVAL AND POPULATION DYNAMICS IN FOUR CALIFORNIA POPULATIONS OF TECATE CYPRESS (CUPRESSUS FORBESII) Author(s): Roland C. de Gouvenain and Ali M. Ansary Source: The Southwestern Naturalist, 51(4):447-454. 2006. Published By: Southwestern Association of Naturalists DOI: 10.1894/0038-4909(2006)51[447:ABFRIA]2.0.CO;2 URL: http://www.bioone.org/doi/full/10.1894/0038- 4909%282006%2951%5B447%3AABFRIA%5D2.0.CO%3B2 BioOne (www.bioone.org) is an electronic aggregator of bioscience research content, and the online home to over 160 journals and books published by not-for-profit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. -
Cupressus Pygmaea Is a Valid Species
Bull. CCP 1 (2): 27-33 J. Bisbee & D. Mаеrki Cupressus pygmaea (Lemmon) Sargent 1901 Cupressus pygmaea is a valid species In 1895 Lemmon described a new taxon from Mendocino County, and recognising its affinity with Cupressus goveniana Gordon (1849), but with enough differences to separate it from the later, he described it as a variety Cupressus goveniana var. pigmaea 1. Six years later, considering the tiny black seeds and that the isolation of the region which it inhabits remote from that occupied by other Species make it possible and convenient to separate this northern tree from the Cupressus Goveniana of central and southern California, Sargent (1901) raised this taxon to specific rank as Cupressus pygmaea 2. C.B.Wolf (1948) acknowledged this view and stressed the fact that it is necessary and possible to look for distinct characters not visible on dry herbarium material. E.Little (1953) chose to reduce several new world Cupressus species to synonymy. Cupressus pygmaea, Cupressus abramsiana Wolf and Cupressus sargentii Jepson were simply merged into Cupressus goveniana 3 and given as synonyms. In 1970, he revised his opinion of systematic synonymisation, but did not choose to return them back to species rank. He reduced the different Cupressus species to varietal rank, four as Cupressus arizonica Greene varieties, two as Cupressus goveniana varieties, one as a variety of Cupressus guadalupensis Watson, and finally admitting Cupressus sargentii as a valid species. Despite Wolf, and arguing about the fact that this author gave hint that these new combinations could be acceptable, he justified his choice almost exclusively by very broad morphological considerations. -
FIRE HISTORY, STAND ORIGINS, and the Persistence of MCNAB CYPRESS, NORTHERN CALIFORNIA, USA
Fire Ecology Vol. 5, No. 3, 2009 Mallek: McNab Cypress Fire History doi: 10.4996/fireecology.0503100 Page 100 RESEARCH ARTICLE FIRE HISTORY, STAND ORIGINS, AND THE PERSISTENCE OF MCNAB CYPRESS, NORTHERN CALIFORNIA, USA Chris R. Mallek Graduate Group in Ecology and Department of Plant Sciences, University of California, Davis, California 95616, USA Tel.: 001-530-752-2644; e-mail: [email protected] ABSTRACT Despite their substantial contribution to the uniqueness and diversity of the California Flo- ristic Province’s flora and vegetation, surprisingly little is known about the region’s native cypress species (genus Hesperocyparis Bartel & R.A. Price). Current ideas about the fire regimes that maintained these species in the past are based largely or solely on assump- tions about the expression and function of life-history characteristics. Empirical studies of fire history are generally lacking. I used a combination of dendrochronological meth- ods, field observations, and contemporary fire records to investigate the history of fire and its role in stand development in McNab cypress (Hesperocyparis macnabiana [A. Murray bis] Bartel), an uncommon serotinous cypress endemic to northern California. Although even-aged stands were present within all 20 populations surveyed, 4 populations also con- tained stands exhibiting uneven age structure. Fire records and field observations con- firmed that even-aged stands originated following stand-replacing fires, but no link be- tween fire and recruitment was found for uneven-aged stands. Rather, trees within un- even-aged stands were generally older, larger, and exhibited higher rates of senescence than those found in even-aged stands, suggesting that inter-fire tree mortality and inter-fire establishment may be linked. -
Santa Ana Mountains Tecate Cypress (Cupressus Forbesii) Management Plan
Final Santa Ana Mountains Tecate Cypress (Cupressus forbesii) Management Plan Prepared by: Susana Rodriguez-Buritica & Katharine Suding University of California, Berkeley Department of Environmental Sciences, Policy, and Management Berkeley, CA 94720 & Kristine Preston Nature Reserve of Orange County 15600 Sand Canyon Avenue Irvine, CA 92618 Prepared for: California Department of Fish and Game 4949 Viewridge Avenue San Diego, CA 92123 Contract # P0750005 01 & Nature Reserve of Orange County May 17, 2010 Santa Ana Mountains Tecate Cypress Management Plan EXECUTIVE SUMMARY Orange County’s Central and Coastal Natural Community Conservation Plan/Habitat Conservation Plan (NCCP/HCP) was established in 1996 to conserve sensitive plant and animal species on approximately 37,000 acres. Tecate cypress (Cupressus forbesii) is a rare endemic species restricted to several locations in southern California and northern Baja California. The northern most population of Tecate cypress occurs in the Santa Ana Mountains within the NCCP/HCP Central Reserve and receives regulatory coverage under the Plan. This population is threatened by too frequent wildfire. The Nature Reserve of Orange County (NROC) oversees monitoring and management of species within the NCCP/HCP and formed the Tecate Cypress Management Committee (TCMC) to develop a management plan for this species. The committee is composed of land owners, land managers and regulatory agencies with an interest in conserving Tecate cypress in the NCCP/HCP. This management plan was developed by NROC based upon the work of researchers from UC Berkeley and input from the TCMC. The objectives of this management plan included determining the current distribution and demographic structure of the Santa Ana Mountains Tecate cypress population and using this data in ecological models to assess threats to persistence and to identify restoration sites for enhancing the population. -
Diseases of Cypresses Willis W
Aliso: A Journal of Systematic and Evolutionary Botany Volume 1 | Issue 1 Article 3 1948 Diseases of Cypresses Willis W. Wagener Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Wagener, Willis W. (1948) "Diseases of Cypresses," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 1: Iss. 1, Article 3. Available at: http://scholarship.claremont.edu/aliso/vol1/iss1/3 PART II Diseases of Cypresses by WILLIS W. WAGENER 255 Preface to Part II For some years the San Francisco station of the Division of Forest Pathology, United States Department of Agriculture, has had under investigation the Coryneum canker of cypress, a disease which has practically eliminated the Monterey Cypress as a: useful tree in most of California. In the course of these studies a good deal has been learned about the susceptibility, under field conditions, of two or three of the commonly planted species of Cupressus but we were handicapped in undertaking any comprehensive tests of the relative susceptibility of other cypresses to the disease by the. lack of sources of stock for test purposes, as well as the uncertainty concerning the true identities of some forms. The initiation by the Rancho Santa Ana Botanic Garden of its project for a detailed botanical and horticultural study of the North American cypresses not only gave promise of resolving questions of identity of the native trees but it also provided, for the first time a possible source of authentic young stock of all native cypresses. At the same time the fact was apparent that any horti cultural evaluation of the various species would be incomplete without as thorough rating as possible of their disease potentialities. -
The Evolution of Cavitation Resistance in Conifers Maximilian Larter
The evolution of cavitation resistance in conifers Maximilian Larter To cite this version: Maximilian Larter. The evolution of cavitation resistance in conifers. Bioclimatology. Univer- sit´ede Bordeaux, 2016. English. <NNT : 2016BORD0103>. <tel-01375936> HAL Id: tel-01375936 https://tel.archives-ouvertes.fr/tel-01375936 Submitted on 3 Oct 2016 HAL is a multi-disciplinary open access L'archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destin´eeau d´ep^otet `ala diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publi´esou non, lished or not. The documents may come from ´emanant des ´etablissements d'enseignement et de teaching and research institutions in France or recherche fran¸caisou ´etrangers,des laboratoires abroad, or from public or private research centers. publics ou priv´es. THESE Pour obtenir le grade de DOCTEUR DE L’UNIVERSITE DE BORDEAUX Spécialité : Ecologie évolutive, fonctionnelle et des communautés Ecole doctorale: Sciences et Environnements Evolution de la résistance à la cavitation chez les conifères The evolution of cavitation resistance in conifers Maximilian LARTER Directeur : Sylvain DELZON (DR INRA) Co-Directeur : Jean-Christophe DOMEC (Professeur, BSA) Soutenue le 22/07/2016 Devant le jury composé de : Rapporteurs : Mme Amy ZANNE, Prof., George Washington University Mr Jordi MARTINEZ VILALTA, Prof., Universitat Autonoma de Barcelona Examinateurs : Mme Lisa WINGATE, CR INRA, UMR ISPA, Bordeaux Mr Jérôme CHAVE, DR CNRS, UMR EDB, Toulouse i ii Abstract Title: The evolution of cavitation resistance in conifers Abstract Forests worldwide are at increased risk of widespread mortality due to intense drought under current and future climate change. -
Water Conserving Plants
Acacia baileyana Trees Common Name: Bailey Acacia Family: Fabaceae Light: Full sun. Characteristics of plant: Grows 20’- 30’ tall, 20’-40’ wide. Evergreen tree has feathery, finely cut blue-grey foliage. Clusters of fragrant, yellow flowers are borne profusely in early to mid-winter. Water needs: Little to no water. Special Features: Very fast grower and very hardy. Caution - allergies to flowers are common. Photo by: Bob Perry Aesculus californica Common Name: California Buckeye Family: Hippocastanaceae Light: Full sun. Characteristics of plant: Grows to 10’-20’ tall, 30’ or wider. Deciduous tree is often multi-trunked. Leaves are divided into 3”-6” long leaflets. Fragrant, cream colored flower plumes appear in spring, followed by pear-shaped fruits. Water needs: Low to moderate water. Special Features: Flowers are poisonous to bees. Drops leaves in summer with little or no water; leaves hold until fall with regular water. Photo by: Beatrice F. Howitt, © California Academy of Sciences T-1 Arbutus menziesii Trees Common Name: Madrone Family: Ericaceae Light: Full sun. Characteristics of plant: Grows 20’- 100’ with round head as wide as tall. Evergreen tree has leathery leaves 3”-6” long. In spring, clusters of pink- ish bell-shaped flowers appear, fol- lowed in fall by clusters of orange to red berries. Water needs: Little to regular water. Special Features: Smooth, reddish- brown bark peels in thin flakes. Must have fast drainage and non-alkaline water. Established plants need only infrequent, deep watering. Photo by: Timothy D. Ives, © 2002 Arbutus unedo Common Name: Strawberry Tree Family: Ericaceae Light: Full sun or partial shade. -
Supplementary Table S2 Details of 455 Conifer Species Used in the Phylogene�C and Physiological Niche Modelling to Es�Mate Drivers of Diversifica�On
Supplementary Table S2 Details of 455 conifer species used in the phylogene�c and physiological niche modelling to es�mate drivers of diversifica�on. Shown are: the clade calcifica�on (10 and 42 clade); number of cleaned georeferenced presence records; the confusion matrix which describes the model fit in terms of true posi�ves, true nega�ves, false posi�ves and false nega�ves; and the es�mated niche area in quarter degree grid squares for the globe (projected) and for version of the globe where all environmental zones are equally common (resampled), see main text for further details. Clade classifica�on Confusion matrix niche area (# grid cells) 42 (68*) Number of True True False False Species 10 clades clades records posi�ves nega�ves posi�ves nega�ves Projected Resampled Abies alba 10 65 119 117 111 4 2 6658 7622 Abies amabilis 10 65 80 79 74 2 0 11783 13701 Abies bracteata 10 65 4 4 15 0 0 1610 1846 Abies concolor 10 65 98 90 86 8 8 13825 15410 Abies fabri 10 65 4 4 17 0 0 2559 2641 Abies fargesii 10 65 13 13 18 0 0 14450 15305 Abies firma 10 65 163 161 163 1 0 2270 2436 Abies fraseri 10 65 15 15 16 0 0 1914 2075 Abies grandis 10 65 77 75 70 2 2 11654 13629 Abies holophylla 10 65 12 12 16 1 0 23899 24592 Abies homolepis 10 65 31 31 34 0 0 791 851 Abies kawakamii 10 65 17 17 26 0 0 700 1164 Abies koreana 10 65 10 10 18 0 0 985 1048 Abies lasiocarpa 10 65 105 100 95 6 5 11422 12454 Abies magnifica 10 65 47 47 58 2 0 11882 14353 Abies mariesii 10 65 16 16 17 0 0 3833 4114 Abies nebrodensis 10 65 1 1 17 0 0 1094 973 Abies nephrolepis 10 65 -
Plant List.Xlsx
Family Latin name Location in garden PINACEAE Abies bracteata (D. Don) Nutt. 10, Yellow Pine W, Californian PINACEAE Abies fabri Craib 236, Asian PINACEAE Abies guatemalensis Rehder 348, Mexico/Central America PINACEAE Abies guatemalensis Rehder 355, Mexico/Central America PINACEAE Abies guatemalensis Rehder 358, Mexico/Central America PINACEAE Abies guatemalensis Rehder 359, Mexico/Central America PINACEAE Abies guatemalensis Rehder 360, Mexico/Central America PINACEAE Abies koreana E.H. Wilson 225, Asian PINACEAE Abies nordmanniana Spach subsp. equi-trojani Coode & Cullen 706, Mediterranean PINACEAE Abies nordmanniana Spach subsp. equi-trojani Coode & Cullen 709, Mediterranean PINACEAE Abies spectabilis (D. Don) Spach 235, Asian LAMIACEAE Acanthomintha duttonii (Abrams) Jokerst Location Restricted CACTACEAE Acharagma aguirreanum (Glass & R.A. Foster) Glass 1005, Arid House CACTACEAE Acharagma roseanum (Boed.) E.F. Anderson 1005, Arid House CACTACEAE Acharagma roseanum (Boed.) E.F. Anderson 1005, Arid House FABACEAE Acmispon dendroideus (Greene) Brouillet var. dendroideus 6B, Channel Isld., Californian CRASSULACEAE Adromischus diabolicus Toelken 1005, Arid House CRASSULACEAE Adromischus mammillaris (L.f.) Lem. 1005, Arid House CRASSULACEAE Adromischus mammillaris (L.f.) Lem. 131, Southern African CRASSULACEAE Adromischus mammillaris (L.f.) Lem. 131, Southern African CRASSULACEAE Adromischus mammillaris (L.f.) Lem. var. cinereus (L.f.) Lem. 1008, Cactus Frame CRASSULACEAE Adromischus nanus (N.E. Br.) Poelln. 1005, Arid House CRASSULACEAE Aeonium balsamiferum Webb & Berthel. 1008, Cactus Frame CRASSULACEAE Aeonium balsamiferum Webb & Berthel. 707A, Canary Islands CRASSULACEAE Aeonium balsamiferum Webb & Berthel. 707B, Canary Islands CRASSULACEAE Aeonium balsamiferum Webb & Berthel. 708, Canary Islands CRASSULACEAE Aeonium castello-paivae Bolle 1008, Cactus Frame CRASSULACEAE Aeonium castello-paivae Bolle 707A, Canary Islands CRASSULACEAE Aeonium haworthii (Salm-Dyck) Webb & Berthel.