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Supplementary Table S2 Details of 455 Conifer Species Used in the Phylogene�C and Physiological Niche Modelling to Es�Mate Drivers of Diversifica�On

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Supplementary Table S2 Details of 455 Conifer Species Used in the Phylogene�C and Physiological Niche Modelling to Es�Mate Drivers of Diversifica�On Supplementary Table S2 Details of 455 conifer species used in the phylogene�c and physiological niche modelling to es�mate drivers of diversifica�on. Shown are: the clade calcifica�on (10 and 42 clade); number of cleaned georeferenced presence records; the confusion matrix which describes the model fit in terms of true posi�ves, true nega�ves, false posi�ves and false nega�ves; and the es�mated niche area in quarter degree grid squares for the globe (projected) and for version of the globe where all environmental zones are equally common (resampled), see main text for further details. Clade classifica�on Confusion matrix niche area (# grid cells) 42 (68*) Number of True True False False Species 10 clades clades records posi�ves nega�ves posi�ves nega�ves Projected Resampled Abies alba 10 65 119 117 111 4 2 6658 7622 Abies amabilis 10 65 80 79 74 2 0 11783 13701 Abies bracteata 10 65 4 4 15 0 0 1610 1846 Abies concolor 10 65 98 90 86 8 8 13825 15410 Abies fabri 10 65 4 4 17 0 0 2559 2641 Abies fargesii 10 65 13 13 18 0 0 14450 15305 Abies firma 10 65 163 161 163 1 0 2270 2436 Abies fraseri 10 65 15 15 16 0 0 1914 2075 Abies grandis 10 65 77 75 70 2 2 11654 13629 Abies holophylla 10 65 12 12 16 1 0 23899 24592 Abies homolepis 10 65 31 31 34 0 0 791 851 Abies kawakamii 10 65 17 17 26 0 0 700 1164 Abies koreana 10 65 10 10 18 0 0 985 1048 Abies lasiocarpa 10 65 105 100 95 6 5 11422 12454 Abies magnifica 10 65 47 47 58 2 0 11882 14353 Abies mariesii 10 65 16 16 17 0 0 3833 4114 Abies nebrodensis 10 65 1 1 17 0 0 1094 973 Abies nephrolepis 10 65 11 11 17 0 0 27907 28683 Abies nordmanniana 10 65 7 7 18 0 0 41987 43241 Abies numidica 10 65 2 2 17 0 0 34 44 Abies pinsapo 10 65 26 26 35 0 0 13088 13463 Clade classification Confusion matrix niche area (# grid cells) 42 (68*) Number of True True False False Species 10 clades clades records positives negatives positives negatives Projected Resampled Abies procera 10 65 31 31 31 0 0 4638 4915 Abies sachalinensis 10 65 21 19 34 0 0 14136 15086 Abies sibirica 10 65 37 37 49 2 0 35459 31771 Abies veitchii 10 65 11 11 17 0 0 570 614 Acmopyle pancheri 3 40 61 61 63 0 0 1486 1550 Acmopyle sahniana 3 39 2 2 5 0 0 2277 1339 Actinostrobus acuminatus 1 10 20 19 22 0 0 1520 1381 Actinostrobus arenarius 1 10 59 58 62 1 1 1285 1327 Actinostrobus pyramidalis 1 10 43 42 41 4 0 4271 3902 Afrocarpus falcatus 3 34 17 17 23 1 0 14995 15687 Afrocarpus gracilior 3 34 48 47 47 1 1 11831 12032 Afrocarpus mannii 3 34 2 2 12 0 0 831 906 Afrocarpus usambarensis 3 34 14 14 24 0 0 2189 2171 Agathis atropurpurea 6 56 8 8 14 0 0 10045 8125 Agathis australis 6 56 13 12 14 0 0 1395 1480 Agathis borneensis 6 56 8 8 12 1 0 5591 3271 Agathis dammara 6 56 43 41 41 2 2 12088 8365 Agathis lanceolata 6 56 31 30 30 0 0 6519 5228 Agathis macrophylla 6 56 12 11 15 0 0 1958 1322 Agathis microstachya 6 56 9 9 14 0 0 5883 5010 Agathis montana 6 56 8 8 14 0 0 514 450 Agathis moorei 6 56 42 41 43 0 0 1262 1202 Agathis ovata 6 56 51 49 49 0 0 7671 6674 Agathis robusta 6 56 23 21 22 0 1 7175 5677 Agathis silbae 6 56 4 4 8 0 0 332 260 Amentotaxus argotaenia 2 27 15 15 20 0 0 16420 18513 Amentotaxus formosana 2 27 5 4 13 0 1 1281 1322 Clade classification Confusion matrix niche area (# grid cells) 42 (68*) Number of True True False False Species 10 clades clades records positives negatives positives negatives Projected Resampled Amentotaxus poilanei 2 27 2 2 13 0 0 1804 1755 Amentotaxus yunnanensis 2 27 11 11 12 0 0 6177 6768 Araucaria angustifolia 5 55 18 18 27 0 0 9255 9927 Araucaria araucana 5 55 42 42 47 0 0 2755 3937 Araucaria bernieri 5 54 38 36 42 0 0 2085 1967 Araucaria bidwillii 5 55 6 6 8 0 0 8886 8015 Araucaria biramulata 5 54 21 20 21 0 0 879 772 Araucaria columnaris 5 54 24 18 21 0 0 2836 2448 Araucaria cunninghamii 5 54 80 72 62 15 4 25088 19622 Araucaria humboldtensis 5 54 22 22 28 0 0 820 840 Araucaria hunsteinii 5 55 9 9 15 0 0 1193 1025 Araucaria laubenfelsii 5 54 34 32 29 0 0 1191 1097 Araucaria luxurians 5 54 17 14 15 0 0 2657 2329 Araucaria montana 5 54 69 69 69 1 0 3903 3412 Araucaria muelleri 5 54 12 11 14 0 0 688 617 Araucaria nemorosa 5 54 4 4 8 0 0 4914 2961 Araucaria rulei 5 54 32 31 29 0 0 2804 2213 Araucaria schmidii 5 54 4 4 8 0 0 474 452 Araucaria scopulorum 5 54 13 11 16 0 0 5444 3460 Araucaria subulata 5 54 22 22 22 0 0 1369 1435 Athrotaxis cupressoides 1 22 29 29 29 0 0 450 1036 Athrotaxis selaginoides 1 22 30 29 29 0 1 641 1330 Austrocedrus chilensis 1 14 49 49 50 0 0 15551 19575 Austrotaxus spicata 2 30 34 34 36 0 0 2104 2125 Callitris endlicheri 1 10 1401 1359 1082 104 38 3821 4035 Callitris macleayana 1 10 88 83 86 5 2 6670 6252 Callitris preissii 1 10 1201 1140 1027 129 25 4712 5447 Clade classification Confusion matrix niche area (# grid cells) 42 (68*) Number of True True False False Species 10 clades clades records positives negatives positives negatives Projected Resampled Callitris rhomboidea 1 10 620 544 458 54 35 6618 6962 Callitropsis nootkaensis 1 2 79 72 69 4 1 16168 18232 Calocedrus decurrens 1 5 81 78 79 7 3 10436 11420 Calocedrus formosana 1 5 23 23 23 2 0 4244 5076 Calocedrus macrolepis 1 5 20 20 21 4 0 9329 10736 Cathaya argyrophylla 8 62 9 9 20 0 0 1326 1479 Cedrus atlantica 10 70 20 20 35 0 0 4677 4847 Cedrus deodara 10 70 16 16 21 0 0 20084 23507 Cedrus libani 10 70 17 17 17 0 0 17280 17378 Cephalotaxus fortunei 2 25 17 16 17 0 1 24711 27574 Cephalotaxus hainanensis 2 25 4 4 13 0 0 2368 1889 Cephalotaxus harringtonii 2 25 103 102 101 0 1 6633 7778 Cephalotaxus lanceolata 2 25 7 7 17 0 0 1751 1675 Cephalotaxus latifolia 2 25 3 3 21 0 0 1283 1482 Cephalotaxus mannii 2 25 24 23 20 4 1 17756 15533 Cephalotaxus oliveri 2 25 5 5 17 0 0 3744 3939 Cephalotaxus sinensis 2 25 29 29 33 4 0 7371 8768 Chamaecyparis formosensis 1 6 172 170 145 3 2 1420 1827 Chamaecyparis lawsoniana 1 6 82 79 89 1 2 7409 8826 Chamaecyparis obtusa 1 6 26 25 33 0 0 1610 1770 Chamaecyparis pisifera 1 6 12 12 18 0 0 8147 8765 Chamaecyparis thyoides 1 6 84 83 69 5 0 13630 15924 Cryptomeria japonica 1 18 13 13 18 0 0 3087 3301 Cunninghamia lanceolata 1 24 19 19 35 1 0 10467 10487 Cupressus cashmeriana 1 2 19 19 22 2 0 1739 1995 Cupressus chengiana 1 2 20 20 33 1 0 19535 22565 Cupressus duclouxiana 1 2 25 25 33 1 0 26000 28571 Clade classification Confusion matrix niche area (# grid cells) 42 (68*) Number of True True False False Species 10 clades clades records positives negatives positives negatives Projected Resampled Cupressus dupreziana 1 2 8 7 18 0 0 1441 1421 Cupressus funebris 1 2 24 24 35 0 0 26753 26043 Cupressus sempervirens 1 2 16 16 17 0 0 28395 29809 Cupressus torulosa 1 2 18 18 19 1 0 10913 12797 Dacrycarpus cinctus 3 38 46 45 48 1 1 3064 3052 Dacrycarpus compactus 3 38 34 34 35 0 0 165 222 Dacrycarpus dacrydioides 3 38 206 169 151 4 6 1653 1940 Dacrycarpus imbricatus 3 38 165 151 143 14 9 12150 9874 Dacrycarpus kinabaluensis 3 38 3 3 12 0 0 155 144 Dacrycarpus vieillardii 3 38 43 42 42 0 0 2056 2107 Dacrydium araucarioides 3 36 59 56 51 0 0 2967 2737 Dacrydium balansae 3 36 56 55 51 0 1 4097 3428 Dacrydium beccarii 3 36 22 22 28 2 0 5439 3871 Dacrydium cupressinum 3 36 182 163 158 10 0 815 1179 Dacrydium elatum 3 36 33 33 26 11 0 11468 9076 Dacrydium guillauminii 3 36 9 9 16 0 0 603 466 Dacrydium lycopodioides 3 36 18 18 22 0 0 563 510 Dacrydium magnum 3 36 5 4 7 0 0 2333 1821 Dacrydium nausoriense 3 36 3 3 5 0 0 1210 1015 Dacrydium nidulum 3 36 39 33 30 6 0 10635 7499 Dacrydium xanthandrum 3 36 17 15 20 1 0 3166 2363 Diselma archeri 1 12 55 55 55 1 0 655 1584 Falcatifolium falciforme 3 37 16 16 24 0 0 2395 1610 Falcatifolium taxoides 3 37 26 26 28 0 0 830 778 Fitzroya cupressoides 1 12 24 24 26 0 0 1223 2035 Fokienia hodginsii 1 7 30 30 32 6 0 15085 14125 Glyptostrobus pensilis 1 17 8 8 12 0 0 7602 7728 Clade classification Confusion matrix niche area (# grid cells) 42 (68*) Number of True True False False Species 10 clades clades records positives negatives positives negatives Projected Resampled Halocarpus bidwillii 4 46 61 59 53 4 0 516 1079 Halocarpus biformis 4 46 170 166 142 7 0 421 926 Halocarpus kirkii 4 46 8 8 8 0 0 2054 2336 Hesperocyparis arizonica 1 2 91 86 84 4 5 17581 18634 Hesperocyparis bakeri 1 2 17 17 31 0 0 3918 4491 Hesperocyparis goveniana 1 2 22 22 33 0 0 2596 3082 Hesperocyparis guadalupensis 1 2 10 9 16 0 0 2901 2993 Hesperocyparis lusitanica 1 2 131 119 106 18 12 12636 12284 Hesperocyparis macnabiana 1 2 34 34 43 0 0 2461 2765 Hesperocyparis macrocarpa 1 2 16 16 16 0 0 4109 4530 Hesperocyparis sargentii 1 2 39 39 49 1 0 7606 8718 Juniperus angosturana 1 1 29 29 29 0 0 12735 12840 Juniperus ashei 1 1 96 95 82 7 1 9703 9817 Juniperus barbadensis 1 1 25 25 34 2 0 7506 6070 Juniperus blancoi 1 1 10 10 23 0 0 1599 1974 Juniperus californica 1 1 33 32 32 2 0 22875 20696 Juniperus chinensis 1 1 29 27 32 1 2 55331 52766 Juniperus coahuilensis 1 1 5 5 17 0 0 3356 3056 Juniperus comitana 1 1 5 5 14 0 0 5338 5608 Juniperus communis 1 1 442 358 326 48 66 19019 21715 Juniperus convallium 1 1 26 26 36 0 0 3079 3432 Juniperus deppeana 1 1 121 118 91 7 3 9919 11092 Juniperus drupacea 1 1 23 23 35 0 0 6613 5314 Juniperus durangensis 1 1 34 34 47 1 0 2987 3132 Juniperus excelsa 1 1 116 109 107 12 6 32214 35972 Juniperus flaccida 1 1 82 82 85 4 0 10507 10562 Juniperus formosana 1 1 46 46 33 16 0 19371 24053 Clade classification Confusion matrix niche area (# grid cells) 42 (68*) Number of True True False False Species 10 clades clades records positives negatives positives negatives Projected Resampled Juniperus gamboana 1 1 9 9 14 0 0 465 456 Juniperus gracilior 1 1 6 6 13 0 0 1513 1760 Juniperus
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