ISMM NEWSLETTER, Volume 1, Issue 8, Date Released:2017-12-18
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Why Mushrooms Have Evolved to Be So Promiscuous: Insights from Evolutionary and Ecological Patterns
fungal biology reviews 29 (2015) 167e178 journal homepage: www.elsevier.com/locate/fbr Review Why mushrooms have evolved to be so promiscuous: Insights from evolutionary and ecological patterns Timothy Y. JAMES* Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA article info abstract Article history: Agaricomycetes, the mushrooms, are considered to have a promiscuous mating system, Received 27 May 2015 because most populations have a large number of mating types. This diversity of mating Received in revised form types ensures a high outcrossing efficiency, the probability of encountering a compatible 17 October 2015 mate when mating at random, because nearly every homokaryotic genotype is compatible Accepted 23 October 2015 with every other. Here I summarize the data from mating type surveys and genetic analysis of mating type loci and ask what evolutionary and ecological factors have promoted pro- Keywords: miscuity. Outcrossing efficiency is equally high in both bipolar and tetrapolar species Genomic conflict with a median value of 0.967 in Agaricomycetes. The sessile nature of the homokaryotic Homeodomain mycelium coupled with frequent long distance dispersal could account for selection favor- Outbreeding potential ing a high outcrossing efficiency as opportunities for choosing mates may be minimal. Pheromone receptor Consistent with a role of mating type in mediating cytoplasmic-nuclear genomic conflict, Agaricomycetes have evolved away from a haploid yeast phase towards hyphal fusions that display reciprocal nuclear migration after mating rather than cytoplasmic fusion. Importantly, the evolution of this mating behavior is precisely timed with the onset of diversification of mating type alleles at the pheromone/receptor mating type loci that are known to control reciprocal nuclear migration during mating. -
Molecular Phylogeny of Laetiporus and Other Brown Rot Polypore Genera in North America
Mycologia, 100(3), 2008, pp. 417–430. DOI: 10.3852/07-124R2 # 2008 by The Mycological Society of America, Lawrence, KS 66044-8897 Molecular phylogeny of Laetiporus and other brown rot polypore genera in North America Daniel L. Lindner1 Key words: evolution, Fungi, Macrohyporia, Mark T. Banik Polyporaceae, Poria, root rot, sulfur shelf, Wolfiporia U.S.D.A. Forest Service, Madison Field Office of the extensa Northern Research Station, Center for Forest Mycology Research, One Gifford Pinchot Drive, Madison, Wisconsin 53726 INTRODUCTION The genera Laetiporus Murrill, Leptoporus Que´l., Phaeolus (Pat.) Pat., Pycnoporellus Murrill and Wolfi- Abstract: Phylogenetic relationships were investigat- poria Ryvarden & Gilb. contain species that possess ed among North American species of Laetiporus, simple septate hyphae, cause brown rots and produce Leptoporus, Phaeolus, Pycnoporellus and Wolfiporia annual, polyporoid fruiting bodies with hyaline using ITS, nuclear large subunit and mitochondrial spores. These shared morphological and physiologi- small subunit rDNA sequences. Members of these cal characters have been considered important in genera have poroid hymenophores, simple septate traditional polypore taxonomy (e.g. Gilbertson and hyphae and cause brown rots in a variety of substrates. Ryvarden 1986, Gilbertson and Ryvarden 1987, Analyses indicate that Laetiporus and Wolfiporia are Ryvarden 1991). However recent molecular work not monophyletic. All North American Laetiporus indicates that Laetiporus, Phaeolus and Pycnoporellus species formed a well supported monophyletic group fall within the ‘‘Antrodia clade’’ of true polypores (the ‘‘core Laetiporus clade’’ or Laetiporus s.s.) with identified by Hibbett and Donoghue (2001) while the exception of L. persicinus, which showed little Leptoporus and Wolfiporia fall respectively within the affinity for any genus for which sequence data are ‘‘phlebioid’’ and ‘‘core polyporoid’’ clades of true available. -
A Phylogenetic Overview of the Antrodia Clade (Basidiomycota, Polyporales)
Mycologia, 105(6), 2013, pp. 1391–1411. DOI: 10.3852/13-051 # 2013 by The Mycological Society of America, Lawrence, KS 66044-8897 A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales) Beatriz Ortiz-Santana1 phylogenetic studies also have recognized the genera Daniel L. Lindner Amylocystis, Dacryobolus, Melanoporia, Pycnoporellus, US Forest Service, Northern Research Station, Center for Sarcoporia and Wolfiporia as part of the antrodia clade Forest Mycology Research, One Gifford Pinchot Drive, (SY Kim and Jung 2000, 2001; Binder and Hibbett Madison, Wisconsin 53726 2002; Hibbett and Binder 2002; SY Kim et al. 2003; Otto Miettinen Binder et al. 2005), while the genera Antrodia, Botanical Museum, University of Helsinki, PO Box 7, Daedalea, Fomitopsis, Laetiporus and Sparassis have 00014, Helsinki, Finland received attention in regard to species delimitation (SY Kim et al. 2001, 2003; KM Kim et al. 2005, 2007; Alfredo Justo Desjardin et al. 2004; Wang et al. 2004; Wu et al. 2004; David S. Hibbett Dai et al. 2006; Blanco-Dios et al. 2006; Chiu 2007; Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610 Lindner and Banik 2008; Yu et al. 2010; Banik et al. 2010, 2012; Garcia-Sandoval et al. 2011; Lindner et al. 2011; Rajchenberg et al. 2011; Zhou and Wei 2012; Abstract: Phylogenetic relationships among mem- Bernicchia et al. 2012; Spirin et al. 2012, 2013). These bers of the antrodia clade were investigated with studies also established that some of the genera are molecular data from two nuclear ribosomal DNA not monophyletic and several modifications have regions, LSU and ITS. A total of 123 species been proposed: the segregation of Antrodia s.l. -
Intragenomic Variation in the ITS Rdna Region Obscures Phylogenetic Relationships and Inflates Estimates of Operational Taxonomic Units in Genus Laetiporus
Mycologia, 103(4), 2011, pp. 731–740. DOI: 10.3852/10-331 # 2011 by The Mycological Society of America, Lawrence, KS 66044-8897 Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus Daniel L. Lindner1 spacer region, intragenomic variation, molecular Mark T. Banik drive, sulfur shelf US Forest Service, Northern Research Station, Center for Forest Mycology Research, One Gifford Pinchot Drive, Madison, Wisconsin 53726 INTRODUCTION Genus Laetiporus Murrill (Basidiomycota, Polypo- rales) contains important polypore species with Abstract: Regions of rDNA are commonly used to worldwide distribution and the ability to produce infer phylogenetic relationships among fungal species cubical brown rot in living and dead wood of conifers and as DNA barcodes for identification. These and angiosperms. Ribosomal DNA sequences, includ- regions occur in large tandem arrays, and concerted ing sequences from the internal transcribed spacer evolution is believed to reduce intragenomic variation (ITS) and large subunit (LSU) regions, have been among copies within these arrays, although some used to define species and infer phylogenetic variation still might exist. Phylogenetic studies typi- relationships in Laetiporus and to confirm the cally use consensus sequencing, which effectively existence of cryptic species (Lindner and Banik conceals most intragenomic variation, but cloned 2008, Ota and Hattori 2008, Tomsovsky and Jankovsky sequences containing intragenomic variation are 2008, Ota et al. 2009, Vasaitis et al. 2009) described becoming prevalent in DNA databases. To under- with mating compatibility, ITS-RFLP, morphology stand effects of using cloned rDNA sequences in and host preference data (Banik et al. 1998, Banik phylogenetic analyses we amplified and cloned the and Burdsall 1999, Banik and Burdsall 2000, Burdsall ITS region from pure cultures of six Laetiporus and Banik 2001). -
2 the Numbers Behind Mushroom Biodiversity
15 2 The Numbers Behind Mushroom Biodiversity Anabela Martins Polytechnic Institute of Bragança, School of Agriculture (IPB-ESA), Portugal 2.1 Origin and Diversity of Fungi Fungi are difficult to preserve and fossilize and due to the poor preservation of most fungal structures, it has been difficult to interpret the fossil record of fungi. Hyphae, the vegetative bodies of fungi, bear few distinctive morphological characteristicss, and organisms as diverse as cyanobacteria, eukaryotic algal groups, and oomycetes can easily be mistaken for them (Taylor & Taylor 1993). Fossils provide minimum ages for divergences and genetic lineages can be much older than even the oldest fossil representative found. According to Berbee and Taylor (2010), molecular clocks (conversion of molecular changes into geological time) calibrated by fossils are the only available tools to estimate timing of evolutionary events in fossil‐poor groups, such as fungi. The arbuscular mycorrhizal symbiotic fungi from the division Glomeromycota, gen- erally accepted as the phylogenetic sister clade to the Ascomycota and Basidiomycota, have left the most ancient fossils in the Rhynie Chert of Aberdeenshire in the north of Scotland (400 million years old). The Glomeromycota and several other fungi have been found associated with the preserved tissues of early vascular plants (Taylor et al. 2004a). Fossil spores from these shallow marine sediments from the Ordovician that closely resemble Glomeromycota spores and finely branched hyphae arbuscules within plant cells were clearly preserved in cells of stems of a 400 Ma primitive land plant, Aglaophyton, from Rhynie chert 455–460 Ma in age (Redecker et al. 2000; Remy et al. 1994) and from roots from the Triassic (250–199 Ma) (Berbee & Taylor 2010; Stubblefield et al. -
ISMM NEWSLETTER, Volume 1, Issue 14, Date Released:2020-03-03
Volume 1, Issue 14 Date-released: March 3, 2020 News reports - Could Future Homes on the Moon and Mars Be Made of Fungi? Up-coming events - Russian Mushroom Days 2020 - Ukrainian Mushroom Days - 26th North American Mushroom Conference & 20th International Society for Mushroom Science Congress Research progress - New Researches - TOCs of Vol. 22 Issues No.1-3 of the International Journal of Medicinal Mushrooms Points and Reviews - The Cultivation and Environmental Impact of Mushrooms (Part II) , by Shu Ting Chang and Solomon P. Wasser Call for Papers Contact information Issue Editor- Mr. Ziqiang Liu [email protected] Department of Edible Mushrooms, CFNA, 4/F, Talent International Building No. 80 Guangqumennei Street, Dongcheng District, Beijing 10062, China News Reports Could Future Homes on the Moon and Mars Be Made of Fungi? Science fiction often imagines our future on Mars and other planets as run by machines, with metallic cities and flying cars rising above dunes of red sand. But the reality may be even stranger – and "greener." Instead of habitats made of metal and glass, NASA is exploring technologies that could grow structures out of fungi to become our future homes in the stars, and perhaps lead to more sustainable ways of living on Earth as well. The myco-architecture project out of NASA's Ames Research Center in California's Silicon Valley is prototyping technologies that could "grow" habitats on the Moon, Mars and beyond out of life – specifically, fungi and the unseen underground threads that make up the main part of the fungus, known as mycelia. "Right now, traditional habitat designs for Mars are like a turtle — carrying our homes with us on our backs – a reliable plan, but with huge energy costs," said Lynn Rothschild, the principal investigator on the early-stage project. -
Phylogenetic Position and Taxonomy of Kusaghiporia Usambarensis Gen
Mycology An International Journal on Fungal Biology ISSN: 2150-1203 (Print) 2150-1211 (Online) Journal homepage: http://www.tandfonline.com/loi/tmyc20 Phylogenetic position and taxonomy of Kusaghiporia usambarensis gen. et sp. nov. (Polyporales) Juma Mahmud Hussein, Donatha Damian Tibuhwa & Sanja Tibell To cite this article: Juma Mahmud Hussein, Donatha Damian Tibuhwa & Sanja Tibell (2018): Phylogenetic position and taxonomy of Kusaghiporia usambarensis gen. et sp. nov. (Polyporales), Mycology, DOI: 10.1080/21501203.2018.1461142 To link to this article: https://doi.org/10.1080/21501203.2018.1461142 © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. Published online: 15 Apr 2018. Submit your article to this journal View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tmyc20 MYCOLOGY, 2018 https://doi.org/10.1080/21501203.2018.1461142 Phylogenetic position and taxonomy of Kusaghiporia usambarensis gen. et sp. nov. (Polyporales) Juma Mahmud Husseina,b, Donatha Damian Tibuhwab and Sanja Tibella aInstitute of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden; bDepartment of Molecular Biology and Biotechnology, College of Natural & Applied Sciences, University of Dar es Salaam, Dar es Salaam, Tanzania ABSTRACT ARTICLE HISTORY A large polyporoid mushroom from the West Usambara Mountains in North-eastern Tanzania Received 17 November 2017 produces dark brown, up to 60-cm large fruiting bodies that at maturity may weigh more than Accepted 2 April 2018 10 kg. It has a high rate of mycelial growth and regeneration and was found growing on both dry KEYWORDS and green leaves of shrubs; attached to the base of living trees, and it was also observed to Kusaghiporia; molecular degrade dead snakes and insects accidentally coming into contact with it. -
A Revised Family-Level Classification of the Polyporales (Basidiomycota)
fungal biology 121 (2017) 798e824 journal homepage: www.elsevier.com/locate/funbio A revised family-level classification of the Polyporales (Basidiomycota) Alfredo JUSTOa,*, Otto MIETTINENb, Dimitrios FLOUDASc, € Beatriz ORTIZ-SANTANAd, Elisabet SJOKVISTe, Daniel LINDNERd, d €b f Karen NAKASONE , Tuomo NIEMELA , Karl-Henrik LARSSON , Leif RYVARDENg, David S. HIBBETTa aDepartment of Biology, Clark University, 950 Main St, Worcester, 01610, MA, USA bBotanical Museum, University of Helsinki, PO Box 7, 00014, Helsinki, Finland cDepartment of Biology, Microbial Ecology Group, Lund University, Ecology Building, SE-223 62, Lund, Sweden dCenter for Forest Mycology Research, US Forest Service, Northern Research Station, One Gifford Pinchot Drive, Madison, 53726, WI, USA eScotland’s Rural College, Edinburgh Campus, King’s Buildings, West Mains Road, Edinburgh, EH9 3JG, UK fNatural History Museum, University of Oslo, PO Box 1172, Blindern, NO 0318, Oslo, Norway gInstitute of Biological Sciences, University of Oslo, PO Box 1066, Blindern, N-0316, Oslo, Norway article info abstract Article history: Polyporales is strongly supported as a clade of Agaricomycetes, but the lack of a consensus Received 21 April 2017 higher-level classification within the group is a barrier to further taxonomic revision. We Accepted 30 May 2017 amplified nrLSU, nrITS, and rpb1 genes across the Polyporales, with a special focus on the Available online 16 June 2017 latter. We combined the new sequences with molecular data generated during the Poly- Corresponding Editor: PEET project and performed Maximum Likelihood and Bayesian phylogenetic analyses. Ursula Peintner Analyses of our final 3-gene dataset (292 Polyporales taxa) provide a phylogenetic overview of the order that we translate here into a formal family-level classification. -
Checklist of Literature on Malaysian Macrofungi
CHECKLIST OF LITERATURE ON MALAYSIAN MACROFUNGI Lee, S.S.1, Horak, E.2, Alias, S.A.3, Thi, B.K.1, Nazura, Z.1, Jones, E.B.G.4 & Nawawi, A.3 1Forest Research Institute Malaysia, Kepong, 52109 Selangor, Malaysia 2Nikodemweg 5, AT-6020 Innsbruck, Austria 3Institute of Biological Sciences, Faculty of Science, University Malaya, 50603 Kuala Lumpur, Malaysia 4National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Agency, 113 Paholoythin Road, Klong 1 Klong Luang, Pathumthani 12120, Thailand 1 PREFACE When I first became interested in the study of the larger fungi in the early 1990s, I contacted the eminent mycologist and botanist, the now late Prof. E.J.H. Corner for advice on a variety of issues related to their study. At that time he informed me that the study of Malaysian Agaricales was 80% incomplete. The situation today, nearly two decades later, has improved only very slightly where we estimate that about 70% of the larger fungi still remain to be discovered or described. Among the reasons for this slow pace of study was the lack of funding and few local mycologists or fungal taxonomists who could undertake such studies. Recognising Malaysia’s position as one of the world’s 12 mega-biodiversity countries and the poor state of knowledge of the fungi, the Ministry of Natural Resources and Environment Malaysia provided funds to the Forest Research Institute Malaysia (FRIM) for a five-year study to conduct an inventory and study of selected fungi in the country. Due to our limited resources and expertise, we decided to focus on the macrofungi or larger fungi, i.e. -
Red List of Fungi for Great Britain: Bankeraceae, Cantharellaceae
Red List of Fungi for Great Britain: Bankeraceae, Cantharellaceae, Geastraceae, Hericiaceae and selected genera of Agaricaceae (Battarrea, Bovista, Lycoperdon & Tulostoma) and Fomitopsidaceae (Piptoporus) Conservation assessments based on national database records, fruit body morphology and DNA barcoding with comments on the 2015 assessments of Bailey et al. Justin H. Smith†, Laura M. Suz* & A. Martyn Ainsworth* 18 April 2016 † Deceased 3rd March 2014. (13 Baden Road, Redfield, Bristol BS5 9QE) * Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB Contents 1. Foreword............................................................................................................................ 3 2. Background and Introduction to this Review .................................................................... 4 2.1. Taxonomic scope and nomenclature ......................................................................... 4 2.2. Data sources and preparation ..................................................................................... 5 3. Methods ............................................................................................................................. 7 3.1. Rationale .................................................................................................................... 7 3.2. Application of IUCN Criterion D (very small or restricted populations) .................. 9 4. Results: summary of conservation assessments .............................................................. 16 5. Results: -
José E. Sánchez, Gerardo Mata and Daniel J. Royse Editors
Updates on Tropical Mushrooms. Basic and Applied Research José E. Sánchez, Gerardo Mata and Daniel J. Royse Editors EE 635.8 U6 Updates on Tropical Mushrooms. Basic and applied research / José E. Sánchez, Gerardo Mata and Daniel J. Royse, editors.- San Cristóbal de Las Casas, Chiapas, México: El Colegio de la Frontera Sur, 2018. 227 p. : photographs, illustrations, maps, portraits; 22.7X17 cm. ISBN: 978-607-8429-60-8 It includes bibliography 1. Tropical mushrooms, 2. Agaricus, 3. Edible mushrooms, 4. Medicinal mushrooms, 5. Mushroom cultivation, 6. Biotechnology, 7 Mexico, 8. China, 9. Guatemala, 10 Cuba, I. Sánchez, José E. (editor), II. Mata Gerardo (editor). III. Royse, Daniel J. (editor). 1st. Edition, 2018 The content of this book was subjected to a process of blind peer reviewing according to rules established by the Editorial Committee of El Colegio de la Frontera Sur. DR © El Colegio de la Frontera Sur www.ecosur.mx El Colegio de la Frontera Sur Carretera Panamericana y Periférico Sur s/n Barrio de María Auxiliadora CP 29290 San Cristóbal de Las Casas, Chiapas, México Photographies of the front page: clockwise, Agaricus subrufescens (D.C. Zied), Agaricus martinicensis (C. Angelini),. Lentinula boryana (G. Mata), Lepista nuda (M.C. Bran), Agaricus trisulphuratus (P. Callac), Sparassis latifolia (Lu Ma), L. boryana (G. Mata), S. latifolia (Lu Ma). At the center, A. subrufescens (G. Mata) No part of this book may be reproduced or transmitted in any form by any means without written permission from the editors. Printed and made in Mexico Acknowledgments Printing of this book was supported financially by Fondos Mixtos Conacyt through the Project FOMIX-13149 “Design, construction, equipment and startup of a state center for innovation and technology transfer for the development of coffee growing in Chiapas, Mexico” and through the Project MT-11063 of Ecosur “Social and environmental innovation in coffee growing areas for reducing vulnerability”. -
Del Pino Dei Mille Anni
Wolfiporia extensa La radice deL pino dei miLLe anni Presente nelle farmacopee di diverse medicine trazionali asiatiche, dal Pacifico al Tibet, lo sclerozio del fungo Wolfiporia extensa possiede numerose proprietà di cui si sta occupando la moderna ricerca scientifi- ca. Chiamato Fu ling in Cina, in MTC è considerato un tonico generale e un drenante sistemico, che svolge un’azione positiva su tutti gli organi, riequilibrando anche le dinamiche dei fluidi nell’organismo. La sua azione si estende anche alla sfera mentale, donando lucidità e quiete ai pensieri. 34 t natural 1 settembre 2016 Wolfiporia extensa La radice * Massimo Rossi otto strati di aghi di pino o sepolto nel terreno, aderen- Ste alle radici di taluni alberi, si può rinvenire una sorta di palla deL pino dei miLLe anni bruna, con una scorza fittamen- te ricoperta da piccoli pori. Si tratta dello sclerozio di un fungo appartenente alla famiglia delle Polyporaceae con una storia anti- ca di utilizzo da parte dell’uomo. Lo sclerozio di Wolfiporia ha una forma irregolare e dimensioni variabili, arrivando a pesare anche Elemento importante della farma- oltre 10 chilogrammi; si ritrova sepolto nei boschi sotto strati di aghi di pino o nel terreno copea di numerose medicine tra- dizionali asiatiche, dal Pacifico al mphius, studioso della flora in- mente, sembra consolidata l’a- Tibet, viene denominato Fu ling donesiana, diede al fungo il nome dozione della nomenclatura Wol- in Cina, Bukuryou o Matsuhodo Pachyma hoelen, in cui Pachyma fiporia extensa (Peck) Ginns & in Giappone e Bokryun in Corea. è la contrazione del greco pachy- J.Lowe.