Authors: Pallavi Subhraveti Peter D Karp Ingrid Keseler An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Anamika Kothari Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. Gcf_000686625Cyc: Sphingobacterium thalpophilum DSM 11723 Cellular Overview Connections between pathways are omitted for legibility. Ron Caspi a dicarboxylate an amino an acid

RS0110840 RS0123010

an amino an amino acid acid a dicarboxylate

Carbohydrate Degradation Aromatic Compound Macromolecule Modification tRNA-uridine 2-thiolation Aminoacyl-tRNA Charging tRNA charging Degradation ditrans,octacis- a peptidoglycan with ditrans,octacis- a nascent a peptidoglycan UDP-N-acetyl- an N-terminal- and selenation (bacteria) a 5-L-glutamyl- a lipid II an L-cysteinyl- D-galactose degradation I (Leloir pathway) undecaprenyldiphospho- (L-alanyl-γ-D-glutamyl- an amino acid undecaprenyldiphospho- peptidoglycan dimer (meso- α-D-muramoyl- 3',5'-ADP sulfite a [glutamine- L-methionyl-L- Tetrapyrrole fucose degradation D-arabinose degradation I [peptide] ATP [tRNA Cys ] ATP roseoflavin protocatechuate N-acetyl-(N-acetyl-β-D- L-lysyl-D-alanyl-D- N-acetyl-(N- (meso-DAP diaminopimelate L-alanyl-γ-D- synthetase]- alanyl-[protein] Phe 5'-phosphate phe a tRNA cys degradation II (ortho- L-tyrosine β-D-galactopyranose glucosaminyl)muramoyl- alanine) pentapeptide acetylglucosaminyl) containing) containing) glutamyl-meso-2,6- penicillin-binding predicted tetrapyrrole biosynthesis β-L-fucopyranose D-arabinopyranose cleavage pathway) γ γ siroheme biosynthesis L-alanyl- -D-glutamyl-L- gamma- muramoyl-L-alanyl- - diaminopimeloyl- protein 2: phosphoadenosine type I methionyl aminoacyl-tRNA ABC tyr a tRNA Tyr gln a tRNA Gln I (from glutamate) cysteine galactose mutarotase: β L-fucose : protocatechuate lysyl-D-alanyl-D-alanine glutamyltransferase: D-isoglutaminyl-N-( - lytic penicillin-binding D-alanyl-D-alanine BS55_RS0118780 phosphosulfate adenylyltransferase/ aminopeptidase: : bifunctional met transporter met phenylalanine--tRNA asn Asn desulfurase: BS55_RS0102535 tRNA BS55_RS0110910 D-asparaginyl)-L-lysyl- reductase: cytidyltransferase BS55_RS0120105 BS55_RS0126020 kinase/ of L- subunit alpha: uroporphyrinogen-III BS55_RS0102235 BS55_RS0110760 transglycosylase protein 2: D-alanyl-D-alanine trp a tRNA Trp leu a tRNA Leu thr a tRNA Thr pro a tRNA Pro arg a tRNA Arg elongator tRNA Met met initiator tRNA Met met lys a tRNA Lys a tRNA Ala ala val a tRNA Val his a tRNA His glu a tRNA glu gly a tRNA Gly cys a tRNA Cys ser a tRNA ser tRNA asp asp ile a tRNA Ile glu [+ 2 isozymes] D-alanyl-D-alanine BS55_RS0120305 FAD synthetase: BS55_RS0114950 L-arabinose monofunctional gamma- domain-containing BS55_RS0118780 penicillin-binding family protein: [+ 2 isozymes] aminoacyl-tRNA methionine tyrosine--tRNA ligase: glutamine--tRNA uroporphyrinogen-III [+ 4 isozymes] α-L-fucopyranose D-ribulose 3-carboxy-cis carboxypeptidase/ BS55_RS0101600 glutamate-- α-D-galactopyranose degradation I biosynthetic glutamyltransferase: protein: protein 2: phosphoadenylyl- BS55_RS0106880 hydrolase: BS55_RS0114450 phenylalanine--tRNA ligase/YqeY domain asparagine-- C-methyltransferase: an [L-cysteine ,cis-muconate D-alanyl-D-alanine D-alanyl-D-alanine- Peptide RS0118415 Peptide tRNA ligase: peptidoglycan BS55_RS0114880 BS55_RS27815 BS55_RS0118780 sulfate reductase: [+ 3 isozymes] BS55_RS0123225 tryptophan--tRNA ligase: leucine--tRNA ligase: threonine--tRNA ligase: proline--tRNA ligase: arginine--tRNA ligase: methionine--tRNA ligase: methionine--tRNA ligase: lysine--tRNA ligase: alanine--tRNA ligase: valine--tRNA ligase: tyrosine--tRNA ligase: histidine--tRNA ligase: ligase subunit beta: glutamate--tRNA ligase: fusion protein: glycine--tRNA ligase: cysteine--tRNA ligase: serine--tRNA ligase: aspartate--tRNA ligase: tRNA ligase: isoleucine--tRNA ligase: BS55_RS0112700 desulfurase]-S- L-fucose isomerase: monofunctional carboxypeptidase/ endopeptidase: an N-terminal L- BS55_RS0121475 L-arabinopyranose transglycosylase: BS55_RS0112690 roseoflavin BS55_RS0100155 BS55_RS0101575 BS55_RS0101750 BS55_RS0102045 BS55_RS0105550 BS55_RS0106945 BS55_RS0106945 BS55_RS0107775 BS55_RS0109820 BS55_RS0113530 BS55_RS0105445 BS55_RS0114625 BS55_RS0104140 BS55_RS0121475 BS55_RS0121600 BS55_RS0121980 BS55_RS0122730 BS55_RS0124185 BS55_RS0124445 BS55_RS0125670 BS55_RS0125940 an L-glutamyl- uroporphyrinogen-III sulfanyl-L-cysteine galactokinase: BS55_RS0110760 biosynthetic endolytic D-alanyl-D-alanine- D-alanyl-D-alanine BS55_RS0125200 met alanyl-[protein] Glu L-arabinose adenine [tRNA ] BS55_RS0120990 BS55_RS0125475 an α-(5-L- peptidoglycan transglycosylase endopeptidase: carboxypeptidase/ a [glutamine C-methyltransferase: D-ribulose isomerase: dinucleotide L-fuculose (2-carboxy- transglycosylase: BS55_RS0125200 synthetase]-O Cys potassium- glutamyl-tRNA BS55_RS0109250 1-phosphate glutamyl)- a peptide MltG: D-alanyl-D-alanine- a N- cys a tRNA Trp Leu Thr Pro Arg Met Met Lys Ala Val Tyr His Phe Glu Gln Gly Cys ser asp Asn Ile α-D-galactose 1-phosphate UDP-α-D-glucose BS55_RS0122160 2,5-dihydro- PAPS 4 -(5'-adenylyl) K + transporting K + an L-tryptophanyl-[tRNA ] an L-leucyl-[tRNA ] an L-threonyl-[tRNA ] an L-prolyl-[tRNA ] an L-arginyl-[tRNA ] an L-methionyl-[elongator tRNA ] an L-methionyl-[initiator tRNA ] an L-lysyl-[tRNA ] an L-alanyl-[tRNA ] an L-valyl-[tRNA ] an L-tyrosyl-[tRNA ] an L-histidyl-[tRNA ] an L-phenylalanyl-[tRNA ] an L-glutamyl-[tRNA ] an L-glutaminyl-[tRNA ] a glycyl-[tRNA ] an L-cysteinyl-[tRNA ] an L-seryl-[tRNA ] an L-aspartyl-[tRNA ] an L-asparaginyl-[tRNA ] an L-isoleucyl-[tRNA ] reductase: precorrin-1 a [TusA sulfur- a peptidoglycan with di-trans,octa-cis amino acid BS55_RS0125475 BS55_RS0124300 endopeptidase: D-ala acetylglucosamine- L-ribulose 5-oxofuran- γ -L-tyrosine ATPase BS55_RS0119585 carrier protein]-S- (L-alanyl- -D-glutamyl- -undecaprenyl a peptidoglycan BS55_RS0125200 -N-acetylmuramyl- uroporphyrinogen-III 2-yl)-acetate L-lysyl-D-alanyl-D- diphosphate (S)-4-amino-5- sulfanyl-L-cysteine ribulokinase: a peptidoglycan di-trans,octa-cis a mature a nascent with D,D cross- D-ala (tetrapeptide) C-methyltransferase: L-fuculose carboxymuconolactone BS55_RS0122150 alanine) pentapeptide dimer (E. faeciums) -undecaprenyl links (meso- pyrophosphoryl- Cd 2+ RS0107740 Cd 2+ oxopentanoate decarboxylase: peptidoglycan peptidoglycan UDP-N- BS55_RS0112700 1-phosphate DHAP glycolaldehyde ribulokinase: diphosphate glutamate-1- BS55_RS0110570 with (L-alanyl- (meso-DAP diaminopimelate D-ala acetylmuramoyl- undecaprenol uroporphyrinogen-III Metabolic Regulator semialdehyde- a [TusD sulfur- BS55_RS0110770 (4,5-dihydro- γ-D-glutamyl- containing) with containing) L-alanyl-γ-D- C-methyltransferase: Nucleoside and Nucleotide Biosynthesis Biosynthesis 2,1-aminomutase: carrier protein]-S- L-ribulose 5- 5-oxofuran- meso-2,6- GlcNAc terminus glutamyl-meso-2,6- + + Na RS0110900 Na BS55_RS0109250 sulfanyl-L-cysteine phosphate 2-yl)-acetate diaminopimeloyl- diaminopimeloyl- ppGpp metabolism BS55_RS0119600 superpathway of purine nucleotides de novo biosynthesis I DHAP (S)-lactaldehyde glycolate L-ribulose-5- D-alanine) D-alanine Fatty Acid and Lipid Biosynthesis superpathway of pyrimidine superpathway of superpathway of pyrimidine deoxyribonucleoside salvage guanine and precorrin-2 5-aminolevulinate phosphate 4- tetrapeptide ribonucleotides de novo biosynthesis adenosine nucleotides guanosine salvage pppGpp bifunctional precorrin- epimerase: palmitate biosynthesis II PRPP de novo biosynthesis I 2'-deoxycytidine Aromatic Compound Biosynthesis porphobilinogen a [TusE sulfur 2 dehydrogenase/ araD 3-oxoadipate 34 carrier protein]-S γ N-acetyl-D- an N-terminal- an N-terminal- GDP-α-D- (bacteria and plant cytoplasm) fatty acid elongation -- saturated gln bifunctional (p)ppGpp synthase: a uridine in tRNA ditrans,octacis- a peptidoglycan L-alanyl- -D- a [protein] D-sedoheptulose sirohydrochlorin 34 a proteinogenic leukotriene-C4 amidophosphoribosyltransferase: hydrogencarbonate nucleoside 2'-deoxycytidine guanosine synthetase/guanosine- BS55_RS0119595 -sulfanylcysteine D-xylulose a 5,10-gly a uridine undecaprenyldiphospho- dimer (E. faeciums) glutamyl-L-lysyl- galactosamine C-terminal glu L-methionyl-L- L-methionyl- mannose IMP asp guanosine 3'- chorismate biosynthesis I D-arabinose degradation II amino acid hypoxanthine 1,7-bisphosphate BS55_RS0110925 purine-nucleoside dipicolinate biosynthesis ferrochelatase: 5-phosphate methylenetetrahydrofolate in tRNA D-alanyl-D-alanine 6-phosphate seryl-[protein] glycyl-[protein] an acetoacetyl-[acp] deaminase: kinase: 3',5'-bis(diphosphate) 3'- diphosphate 5'- PRPP N-acetyl-(N- L-glutamate an acetoacetyl-[acp] β phosphorylase: porphobilinogen BS55_RS0112695 tRNA 2- UDP-glucose-- 5-phospho- - gly carbamoyl- BS55_RS0119700 BS55_RS0100160 pyrophosphohydrolase: triphosphate 3'- D-erythrose UDP-glucose 4- acetylglucosaminyl) penicillin-binding GDP-mannose BS55_RS0121350 thiouridine(34) hexose-1-phosphate D-arabinopyranose class I fructose- 3-oxoacyl-[acyl- D-ribosylamine phosphate synthase adenylosuccinate cytidine deaminase: BS55_RS0112750 diphosphatase: 4-phosphate hydroxymethylbilane sirohydrochlorin epimerase GalE: tRNA uridine-5- gamma- muramoyl-L-alanyl- protein 2: penicillin-binding N-acetylglucosamine- 30S ribosomal type I methionyl type I methionyl pyrophosphatase dCMP guanine asp synthase MnmA: uridylyltransferase: L-fucose isomerase: γ bisphosphate carrier-protein] large subunit: synthase: BS55_RS0101045 BS55_RS0112750 synthase: BS55_RS0115085 carboxymethylaminomethyl(34) glutamyltransferase: xanthine -D-isoglutaminyl- BS55_RS0118780 protein 2: 6-phosphate protein S6--L- aminopeptidase: aminopeptidase: NudK: bifunctional BS55_RS0110810 BS55_RS0120985 BS55_RS0110760 maltose degradation β aldolase: reductase: phosphoribosylamine- BS55_RS0124900 BS55_RS0112760 (d)CMP kinase: 3-deoxy- BS55_RS0119590 bifunctional precorrin- synthesis BS55_RS0110910 phosphoribosyltransferase: N-( -D-asparaginyl) BS55_RS0118780 deacetylase: glutamate ligase: BS55_RS0120105 BS55_RS0120105 BS55_RS0124095 xanthine aspartate kinase/ α UDP-α-D-galactose D-ribulose D-alanyl-D-alanine BS55_RS0124190 BS55_RS0104270 -glycine ligase: 2'-deoxyuridine BS55_RS0100315 D-arabino- 2 dehydrogenase/ -D-glucopyranose 1-phosphate MnmG: BS55_RS0117295 BS55_RS0100220 -L-lysyl-D-alanine BS55_RS0115645 BS55_RS0101725 glutamine- adenylosuccinate phosphoribosyltransferase: homoserine 34 gamma- carboxypeptidase/ D-alanyl-D-alanine [+ 2 isozymes] [+ 2 isozymes] a 3-oxoacyl-[acp] BS55_RS0116965 ppGpp heptulosonate preuroporphyrinogen sirohydrochlorin a 2-thiouridine maltose class II fructose- 3-ketoacyl-ACP hydrolyzing synthase: GTP ribulokinase: tRNA uridine-5- glutamyltransferase: hypoxanthine D-alanyl-D-alanine- carboxypeptidase/ N-acetylglucosamine- α-D-mannose thymidine kinase: dCDP BS55_RS0100220 dehydrogenase I: ferrochelatase: in tRNA maltose bisphosphate reductase: 7-phosphate phospho-sugar mutase: BS55_RS0122150 BS55_RS0114880 phosphoribosyltransferase: monofunctional D-alanyl-D-alanine- a [protein] C- 3-ketoacyl-ACP carbamoyl- BS55_RS0124135 hypoxanthine BS55_RS0114095 uroporphyrinogen- carboxymethylaminomethyl(34) endopeptidase: 6-phosphate aldolase: an N-terminal an N-terminal GMP 1-phosphate BS55_RS0105810 nucleoside- 3-dehydroquinate BS55_RS0112695 tRNA uridine-5- BS55_RS0116985 phosphorylase: BS55_RS0121540 α BS55_RS0101970 GAR phosphate synthase III synthase: ribulokinase: synthesis GTPase biosynthetic BS55_RS0125200 endopeptidase: deacetylase: terminal -L- met L-seryl-[protein] met reductase: deoxynucleoside diphosphate kinase: phosphoribosyltransferase: nucleoside- synthase: [+ 2 isozymes] carboxymethylaminomethyl(34) D-xylose BS55_RS0109495 BS55_RS0124795 glycyl-[protein] a (3R)-3- small subunit: thymidine L-aspartyl- BS55_RS0121555 siroheme BS55_RS0110770 β-D-glucopyranose MnmE: BS55_RS0100235 α γ peptidoglycan BS55_RS0125200 BS55_RS28510 glutamate-α- BS55_RS0101970 phosphoribosylglycinamide adenylo-succinate kinase: BS55_RS0120965 BS55_RS0121540 diphosphate kinase: GDP BS55_RS0100200 synthesis enzyme D-glucopyranose 6-phosphate degradation I an -( -L-glutamyl) hydroxybutanoyl- BS55_RS0102140 4-phosphate D-ribulose 1-phosphate leukotriene-D4 transglycosylase: L-glutamate beta-ketoacyl- BS55_RS0100160 BS55_RS0120965 pyrophosphokinase: bifunctional (p)ppGpp MnmG: BS55_RS0117295 -L-amino acid a peptidoglycan D-erythrose [acp] 3-oxoacyl-[acyl- formyltransferase: dCTP uroporphyrinogen-III 5-phosphate BS55_RS0125475 γ ACP synthase II: adenylosuccinate thymidine kinase: GMP BS55_RS0112750 synthetase/guanosine- 3-dehydroquinate D-xylose beta- a 5-carboxymethylaminomethyluridine 34 IMP tetramer with a D-ala L-alanyl- -D- D-galactosamine DHAP bifunctional carrier-protein] BS55_RS0107845 aspartate- tRNA uridine-5- a 7,8-dihydrofolate acetate 4-phosphate BS55_RS0114635 carbamoyl : BS55_RS0105810 3',5'-bis(diphosphate) 3'- xylose isomerase: phosphoglucomutase: in tRNA D,D cross-link glutamyl-L- D-ala 6-phosphate UDP-3-O-[3- reductase: asp dUMP semialdehyde carboxymethylaminomethyl(34) FGAR phosphate BS55_RS0114020 deoxynucleoside pyrophosphohydrolase: type II 3- BS55_RS0110895 BS55_RS0109490 a peptidoglycan di-trans,octa-cis (Enterococcus lysyl-D-alanine hydroxymyristoyl] N- beta-ketoacyl- BS55_RS0104270 dehydroquinate dehydrogenase: synthesis GTPase kinase: adenine and BS55_RS0112750 melibiose degradation D-xylulose β-D-glucose dimer (E. faecium -undecaprenyl faecium) acetylglucosamine ACP synthase II: a (3R)-3- dehydratase: BS55_RS0120945 MnmE: BS55_RS0100235 a 2,3,4-saturated phosphoribosylformylglycinamidine thymidylate BS55_RS0100160 adenosine salvage I GDP 6-phosphate , tetrapeptide) diphosphate deacetylase/3- BS55_RS0108425 hydroxyacyl-[acyl- aspartate AMP superpathway of pyrimidine fatty acyl-[acp] synthase: BS55_RS0104145 synthase: BS55_RS0101605 L-aspartate 4- a 5-carboxymethylaminomethyl- xylulokinase: carrier protein] carbamoyltransferase nucleobases salvage 34 hydroxyacyl-ACP bifunctional BS55_RS0124275 semialdehyde 2-thiouridine in tRNA melibiose BS55_RS0110890 dehydratase: UDP-3-O-[3- catalytic subunit: adenosine 3-dehydroshikimate α 3-aci- ditrans,octacis- β-D-fructofuranose an N-terminal- D-sedoheptulose a protein-L- an N-terminal- FGAM adenylate kinase: uracil dihydrodipicolinate D-xylulose UDP-N-acetyl- -D-muramoyl- D-alanyl-D-alanine a proteinogenic glutathione hydroxypyruvate an N-modified hydroxymyristoyl] N- BS55_RS0123275 lipoprotein posttranslational γ undecaprenyldiphospho- 1-phosphate L-methionyl-L- 1-phosphate methionine- L-methionyl-L- BS55_RS0115115 BS55_RS0102160 uracil purine-nucleoside shikimate alpha-galactosidase: 5-phosphate L-alanyl- -D-glutamyl-L-lysine nitropropanoate amino acid aminoacyl-[tRNA] dGDP acetylglucosamine synthetase: modification N-acetyl-(N- threonyl-[protein] (R)-S-oxide valyl-[protein] phosphoribosylformylglycinamidine phosphoribosyltransferase: phosphorylase: BS55_RS0123880 peptide-methionine class 1b a (2E)-but- dehydrogenase: BS55_RS0124600 a 5-aminomethyl-2- acetylglucosaminyl) deacetylase/3- cyclo-ligase: BS55_RS0101715 N-carbamoyl- BS55_RS0124940 BS55_RS0121350 Secondary Metabolite Biosynthesis a [prolipoprotein]- (R)-S-oxide 2-enoyl-[acp] aroE 34 UDP-N-acetylmuramoyl- nitronate pyruvate class I fructose- class I fructose- ribonucleoside- hydroxyacyl-ACP ADP adenine [+ 2 isozymes] thiouridine in tRNA gamma- muramoyl-L-alanyl-γ-D- aminoacyl-tRNA type I methionyl type I methionyl L-aspartate bifunctional pyr operon (2S,4S)-4- L-cysteine D-galactopyranose D-glucopyranose tripeptide--D-alanyl- monooxygenase: dehydrogenase: bisphosphate bisphosphate reductase MsrB: diphosphate crotonyl-[acyl-carrier- dehydratase: AIR isoglutaminyl-L-lysyl- shikimate hydroxy-2,3,4,5- Amino Acid Degradation BS55_RS0107970 glutamyltransferase: hydrolase: aldolase: aminopeptidase: BS55_RS0115695 aminopeptidase: reductase: dihydroorotase: transcriptional regulator/uracil methylerythritol phosphate pathway II diacylglyceryl D- alanine ligase: (glycyl) -D-alanyl-D-alanine BS55_RS0114615 aldolase: protein] reductase: BS55_RS0115115 class 1b dTMP adenine fluoroacetate and preQ biosynthesis BS55_RS0110910 5 BS55_RS0126020 BS55_RS0120105 BS55_RS0120105 phosphoribosyltransferase tetrahydrodipicolinate 0 : BS55_RS0116810 BS55_RS0124190 BS55_RS0124190 methionine- BS55_RS0122030 BS55_RS0107705 a trans-2- 5-(carboxyamino) BS55_RS0101850 fluorothreonine biosynthesis nitronate pyruvate ribonucleoside- phosphoribosyltransferase: shikimate kinase: gamma- aminoacyl-tRNA [+ 2 isozymes] [+ 2 isozymes] BS55_RS0122035 a 2,3,4-saturated imidazole PyrR: BS55_RS0123270 D-glyceraldehyde pyruvate a 5-methylaminomethyl- BS55_RS0104180 L-arginine bifunctional UDP-N- monooxygenase: dehydrogenase class II fructose- class II fructose- R-sulfoxide enoyl-[acyl- dihydroorotase: diphosphate BS55_RS0111965 BS55_RS0124760 L-histidine degradation I L-proline degradation L-serine degradation glutamyltransferase: monofunctional hydrolase: fatty acyl-[acp] ribonucleotide UMP 3-phosphate 2-thiouridine 34 in tRNA prolipoprotein degradation VI acetylmuramoyl-tripeptide:D- BS55_RS0117875 complex E1 bisphosphate bisphosphate reductase: GDP a butanoyl-[acp] carrier protein] BS55_RS0109835 reductase: fluoride BS55_RS0114880 biosynthetic BS55_RS0123225 mutase: shikimate 3- GTP diacylglyceryl (arginase 2 pathway) an N-terminal L- BS55_RS28915 an N-terminal BS55_RS0122030 dTDP (d)CMP kinase: AMP dipicolinate alanyl-D-alanine ligase/ component aldolase: aldolase: 2,3,4-saturated fatty (S)-dihydroorotate 1-deoxy-D-xylulose- GTP cyclohydrolase peptidoglycan met a [protein]-L- met beta-ketoacyl- BS55_RS0125990 BS55_RS0100315 phosphate SAM-dependent transferase: his ser alanine racemase: [unspecified subunit beta: BS55_RS0124795 threonyl-[protein] BS55_RS0124795 L-valyl-[protein] acyl-[acp]:NAD+ BS55_RS0122035 nucleoside- I FolE: arg pro α γ transglycosylase: methionine formate formate ACP synthase II: 5-phosphate chlorinase/ BS55_RS0100645 L-threonine BS55_RS0118575 3-oxopropanoate nitrite degradation an -( -L- BS55_RS0117380 RS0109265 asp diphosphate kinase: UMP kinase: 3-phosphoshikimate 1- 7,8- a 5-methylaminomethyl- histidine proline L-serine an N-modified an uncharged nitrite : CAIR quinone-dependent synthase: BS55_RS0117395 a [prolipoprotein]- arginase: degradation II glutamyl)-L- L-cysteinylglycine BS55_RS0125475 nitrite BS55_RS0108425 BS55_RS0126005 carboxyvinyltransferase: : dihydroneopterin 2-(S-geranyl) ammonia-lyase: ammonia-lyase: products] tRNA BS55_RS0107705 dihydroorotate dADP BS55_RS0120965 BS55_RS0117260 dehydrogenase: amino acid amino acid D-glyceraldehyde D-erythrose BS55_RS0125120 34 S-1,2-diacyl-sn- BS55_RS0107905 BS55_RS27100 BS55_RS0121110 α DHAP DHAP beta-ketoacyl- BS55_RS0118735 3'-triphosphate thiouridine in tRNA BS55_RS0100210 2-aminoprop- UDP-N-acetyl- -D-muramoyl-L-alanyl- dehydrogenase: dTTP UDP 5-enolpyruvoyl- glyceryl-L-cysteine urocanate (S)-1-pyrroline- thr γ a peptidoglycan di-trans,octa-cis CO glycolyl-CoA NADH ACP synthase II: phosphoribosylaminoimidazolesuccinocarboxamide 5'-deoxy-5'- L-ornithine -D-glutamyl-L-lysyl-D-alanyl-D-alanine 2 nitrite nitrite BS55_RS0107595 nucleoside- 1-deoxy-D-xylulose 6-carboxytetrahydropterin 5-carboxylate 2-enoate -undecaprenyl BS55_RS0114635 synthase: BS55_RS0125130 nucleoside-diphosphate shikimate 3- fluoroadenosine dimer (S. aureus) PRPP diphosphate kinase: 5-phosphate synthase: lipoprotein urocanate diphosphate RS27910 orotate kinase: BS55_RS0120965 phosphate purine-nucleoside ornithine--oxo-acid a 3-oxohexanoyl- CDP-diacylglycerol CDP-diacylglycerol BS55_RS0120965 BS55_RS0117390 a 5-methylaminomethyl- signal peptidase: hydratase: nitrate nitrate chorismate 1-deoxy-D-xylulose- phosphorylase: transaminase: L-2-amino-3- [acp] biosynthesis II biosynthesis I SAICAR UTP 6-carboxy-5,6,7,8- BS55_RS0108165 purine deoxyribonucleosides salvage synthase: 5-phosphate 2-(Se-phospho) BS55_RS0125930 6 urea RS0102370 urea orotate BS55_RS0121350 BS55_RS0107900 oxobutanoate 34 an O - N-acetyl-muramoyl-(L- a [protein] N- a [lipoyl-carrier a peptide with dATP tetrahydropterin 34 a 5,10- a 2-thiouridine a [protein]- inosine-5'-phosphate biosynthesis I CTP synthase: BS55_RS0118730 reductoisomerase: selenouridine in tRNA 4-imidazolone- L-glutamate-5- 2-iminopropanoate pyruvate D-glycero-β-D- MoO - an L-asparaginyl- 6 3-oxoacyl-[acyl- phosphoribosyltransferase: methylguanine alanyl-γ-D-glutamyl-L- terminal-formyl- 2 protein]-N -[(R) an N-terminal DHAP DHAP adenylosuccinate 5-fluoro-5-deoxy-D- an (S-diacyl-sn- L-glutamate-5- glycine C- methylenetetrahydrofolate in tRNA dGTP L-cysteine ATP ATP Asn dADP carrier-protein] BS55_RS0101960 BS55_RS0113990 BS55_RS0101380 7-carboxy-7- a lipoprotein 5-propanoate semialdehyde in DNA manno-heptose L-methionine molybdopterin [tRNA ] NAD(P)H- NAD(P)H- lyase: chorismate ribose 1-phosphate glyceryl)-L-cysteinyl- semialdehyde acetyltransferase: lysyl-D-alanyl-D-alanine) -dihydrolipoyl]- L-methionine deazaguanine signal peptide 2+ 2+ reductase: AIR CTP 2'-deoxyguanosine 2'-deoxyadenosine imidazolonepropionase: L-glutamate gamma- 1-phosphate L-lysine dihydrolipoyl class 1b Co Co dependent glycerol- dependent glycerol- BS55_RS0114020 synthase: [apolipoprotein] BS55_RS0107020 RS0117305 BS55_RS0104270 5-(carboxyamino)imidazole deoxynucleoside deoxynucleoside MEP a 5-methylaminomethyl- tRNA uridine-5- cysteine pyruvate ribonucleoside- Mg 2+ Mg 2+ 3-phosphate 3-phosphate orotidine 5'- apolipoprotein N- BS55_RS0108160 semialdehyde penicillin-binding peptide aminoacyl-tRNA dehydrogenase: type I methionyl BS55_RS0101760 34 dehydrogenase: 3-ketoacyl-ACP AICAR ribonucleotide synthase: kinase: kinase: 2-selenouridine dehydrogenase: gly carboxymethylaminomethyl(34) deoxyguanosinetriphosphate methyltransferase: molybdenum cofactor BS55_RS0125700 diphosphate dehydrogenase: dehydrogenase: phosphate 2-C-methyl-D- acyltransferase: N-formimino- pyruvate protein 2: bifunctional heptose deformylase: hydrolase: aminopeptidase: reductase: BS55_RS0125985 BS55_RS0100160 BS55_RS0100160 5-fluoro-5-deoxy-D- 7-carboxy-7- in tRNA BS55_RS0119690 synthesis enzyme triphosphohydrolase: BS55_RS0111870 BS55_RS0114615 guanylyltransferase: reductase: BS55_RS0111995 BS55_RS0111995 bifunctional CMP phosphorylation erythritol 4-phosphate BS55_RS0124205 (S)-1-pyrroline- L-glutamate BS55_RS0118780 7-phosphate BS55_RS0103880 BS55_RS0126020 dihydrolipoyl BS55_RS0120105 dGMP dAMP ribulose 1-phosphate deazaguanine MnmG: BS55_RS0117295 BS55_RS0122030 2+ 2+ BS55_RS0101970 sn-glycerol sn-glycerol orotidine-5'- N5-CAIR an N-acyl-(S-diacyl- a peptide 5-carboxylate L-alanine BS55_RS0119535 methylated-DNA-- pyruvate kinase/heptose BS55_RS27925 Mg RS0101690 Mg phosphoribosylaminoimidazolecarboxamide cytidylyltransferase: D-alanyl-D-alanine [+ 3 isozymes] aminoacyl-tRNA dehydrogenase: [+ 2 isozymes] BS55_RS0122035 a (3R)-3- 3-phosphate phosphate sn-glyceryl)-L- formimidoylglutamase: glu tRNA uridine-5- [protein]-cysteine S- dehydrogenase a [lipoyl-carrier 3-phosphate formyltransferase/IMP CMP 5-(carboxyamino) BS55_RS0101810 pyrroline-5- degradation IV carboxypeptidase/ 1-phosphate hydrolase: BS55_RS0125715 hydroxyhexanoyl- decarboxylase: cysteinyl-[lipoprotein] BS55_RS0121020 carboxymethylaminomethyl(34) complex E1 6 ADP glycerol-3- glycerol-3- (d)CMP kinase: 4-(cytidine 5'- carboxylate methyltransferase: adenyltransferase: adenylyl protein]-N - cyclohydrolase: BS55_RS0102075 BS55_RS0100505 imidazole ribonucleotide synthesis GTPase D-alanyl-D-alanine- an N-terminal L- BS55_RS0123225 [acp] BS55_RS0100315 formimidoylglutamase: L-glutamine L-asparagine triphosphate BS55_RS0118920 component BS55_RS29235 formate molybdenum lipoyl-L-lysine phosphate 1-O- phosphate 1-O- mutase: BS55_RS0125990 diphospho)-2-C- reductase: ala 2'-deoxyguanosine endopeptidase: met a peptide Mg 2+ RS0124350 Mg 2+ bifunctional FAICAR CDP fluoroacetaldehyde preQ BS55_RS0108170 degradation I MnmE: BS55_RS0100235 subunit beta: methionyl-[protein] cofactor acyltransferase PlsY: acyltransferase PlsY: UMP methyl-D-erythritol 0 BS55_RS0119810 degradation I alanine BS55_RS0125200 UDP-3-O-[3- CAIR 4-(cytidine 5'- a [protein]-S- BS55_RS0117380 ADP-D-glycero-β- BS55_RS0110985 BS55_RS0110985 (d)CMP kinase: nucleoside- dGDP dADP glu dehydrogenase: a guanine in DNA asn tRNA Asn hydroxymyristoyl] N- a 1-acyl-sn a 1-acyl-sn bifunctional queuosine pro gln methyl-L-cysteine D-manno-heptose BS55_RS0100315 diphosphate kinase: diphospho)- asn BS55_RS0115150 a 5-aminomethyl-2- acetylglucosamine phosphoribosylaminoimidazolecarboxamide biosynthesis I (de novo) a 7,8-dihydrofolate N-acetyl-muramoyl-(L- 2+ 2+ -glycerol 3- -glycerol 3- BS55_RS0120965 phosphoribosylaminoimidazolesuccinocarboxamide 2-C-methyl-D- imidazole glycerol thiouridine 34 in tRNA Mg RS0105725 Mg deacetylase/3- formyltransferase/IMP UMP kinase: nucleoside- nucleoside- L-glutamine type I asparaginase: amino acid alanyl-γ-D-glutamyl- D-ala acetyl-CoA CO NADH phosphate phosphate synthase: BS55_RS0125130 erythritol kinase: phosphate synthase: 2 hydroxyacyl-ACP cyclohydrolase: BS55_RS0102075 BS55_RS0126005 CTP diphosphate kinase: diphosphate kinase: preQ degradation II BS55_RS0123315 dehydrogenase: L-lysyl-D-alanine) 1-acyl-sn-glycerol- 1-acyl-sn-glycerol- BS55_RS0111970 fluoroacetate 0 BS55_RS0125155 BS55_RS0120965 BS55_RS0120965 4-fluorothreonine BS55_RS0105410 dehydratase: 3-phosphate 3-phosphate SAICAR 2-phospho-4-(cytidine BS55_RS0125165 asp UDP pyruvate 2+ 2+ BS55_RS0115115 Zn RS0110860 Zn acyltransferase: acyltransferase: IMP 5'-diphospho)-2-C- gln [+ 7 isozymes] a carboxy- lipid II (meso Nα,Nε-diacetyl-lysyl- L-rhamnulose a negatively nucleoside- adenylosuccinate lyase: dGTP dATP preQ glutamate hydrogen selenide a peptidoglycan dimer (generic) aci-nitroethane a D-tyrosyl- a RNA-DNA hybrid an L-arabinan (S)-NADPHX BS55_RS28935 BS55_RS28935 methyl-D-erythritol 1 glu O-acetyl-L-serine adenylated- cys diaminopimelate Tyr 1-phosphate supercoiled DNA a (2E)-hex- diphosphate kinase: BS55_RS0114020 D-alanyl-D-alanine [tRNA ] 2-C-methyl-D- synthase: gltD [ThiS sulfur- containing) DNA gyrase/ arabinan endo- bifunctional 2-enoyl-[acp] 1-acyl-sn-glycerol- 1-acyl-sn-glycerol- BS55_RS0120965 erythritol 2,4- tRNA guanosine(34) BS55_RS0125575 topoisomerase 1,5-alpha-L- 2+ 2+ 3-phosphate 3-phosphate gln AICAR lytic transglycosylase carrier protein] ADP-dependent Zn RS0107370 Zn hexanoyl-[acyl- UTP cyclodiphosphate transglycosylase glu penicillin-binding nitronate ribonuclease HII: bifunctional IV subunit A: arabinosidase: acyltransferase: acyltransferase: autoinducer AI-2 biosynthesis I C1 Compound Utilization and Assimilation O-acetylhomoserine domain-containing peptidoglycan D-tyrosyl-tRNA(Tyr) NAD(P)H-hydrate carrier-protein] synthase: Tgt: protein 2: monooxygenase: BS55_RS0116355 rhamnulose-1- BS55_RS0109880 BS55_RS0106205 BS55_RS0119775 BS55_RS0119775 bifunctional aminocarboxypropyltransferase/ protein: BS55_RS27815 cysteine synthetase: deacylase: dehydratase/ reductase: a 1,2-diacyl- a 1,2-diacyl- IMP dehydrogenase: CTP synthase: guanine and BS55_RS0122685 BS55_RS0125555 BS55_RS0118780 BS55_RS0107970 ribonuclease HI: phosphate aldolase/ NAD(P)H-hydrate phosphoribosylaminoimidazolecarboxamide a 7-aminomethyl-7- formaldehyde oxidation : desulfurase: BS55_RS0118470 BS55_RS0114870 type I DNA arabinan endo- a metal a metal BS55_RS0107705 BS55_RS0118830 BS55_RS0113990 guanosine salvage II pyrimidine ribonucleosides salvage I SAM formaldehyde endolytic D-alanyl-D-alanine nitronate BS55_RS0112025 short-chain RS0117600 sn-glycerol sn-glycerol formyltransferase/IMP 34 BS55_RS0100925 topoisomerase: 1,5-alpha-L- epimerase: 2-C-methyl-D-erythritol- deazaguanosine VII (THF pathway) transglycosylase MltG: BS55_RS0118500 monofunctional cation cation 3-phosphate 3-phosphate superpathway of guanosine cyclohydrolase: BS55_RS0102075 oxidation II carboxypeptidase/ monooxygenase: dehydrogenase: arabinosidase: BS55_RS0101515 2,4-cyclodiphosphate in tRNA β cysteine synthase [+ 4 isozymes] biosynthetic BS55_RS0100325 a hexanoyl-[acp] phosphatidate phosphatidate CTP nucleotides de novo biosynthesis I cytidine oleate -oxidation Fatty Acid and Lipid Degradation (glutathione-dependent) BS55_RS0124300 D-alanyl-D-alanine- BS55_RS0117875 BS55_RS0122415 phospholipases formaldehyde CysM: BS55_RS0124730 a tRNA Tyr a nucleoside 5'- a relaxed DNA BS55_RS26875 NADPH FAICAR guanosine (E)-4-hydroxy-3- tRNA preQ1(34) S- peptidoglycan D-tyrosine DNA an α(1,5)- cytidylyltransferase: cytidylyltransferase: SAH formaldehyde endopeptidase: a metal a metal beta-ketoacyl- nucleoside deaminase: methylbut-2-enyl- adenosylmethionine transglycosylase: monophosphate RS0122750 BS55_RS0117355 BS55_RS0117355 oleate a 1,2-diacyl- GlcNAc-1,6-anhydro- BS55_RS0125200 L-arabinan cation ACP synthase II: bifunctional a lipid II a thiocarboxy- BS55_RS0125475 DHAP cation asp IMP BS55_RS0119700 diphosphate ribosyltransferase- a phosphatidylcholine sn-glycerol acetate MurNAc-pentapeptide ala acetaldehyde nitrite (S)-lactaldehyde BS55_RS0108425 a CDP- a CDP- a 5,10- L-selenocysteine AMP [ThiS-Protein] XMP phosphoribosylaminoimidazolecarboxamide cytidine deaminase: CMP synthase: isomerase QueA: long-chain fatty 3-phosphate diacylglycerol diacylglycerol methylenetetrahydrofolate S-(hydroxymethyl) α ε beta-ketoacyl- formyltransferase/IMP guanine BS55_RS0114420 BS55_RS0101805 acid--CoA ligase: lipid II (meso di-trans,octa-cis N ,N -diacetyl- adenylosuccinate IMP dehydrogenase: BS55_RS0101045 glutathione D-ala a metal a metal ACP synthase II: glutamine- cyclohydrolase: BS55_RS0102075 (E)-4-hydroxy-3- 34 a 1-acyl-sn bifunctional -undecaprenyl lysyl-D-alanine synthase: BS55_RS0118830 an epoxyqueuosine BS55_RS0100215 diaminopimelate cation cation xanthine methylbut-2-en- 5,10-methylene- glutathione- BS55_RS0114635 hydrolyzing BS55_RS0112760 uridine S-ribosyl-L-homocysteine in tRNA [+ 2 isozymes] a phosphatidylcholine -glycero-3- containing) diphosphate RS27955 phosphoribosyltransferase: 1-yl diphosphate tetrahydrofolate dependent a 3-oxooctanoyl- GMP synthase: IMP 4-hydroxy-3- epoxyqueuosine phosphocholine ala ala adenylosuccinate BS55_RS0100220 uridine kinase: dehydrogenase/ formaldehyde BS55_RS0100500 XMP methylbut-2-enyl S-ribosylhomocysteine reductase QueH: oleoyl-CoA [acp] synthase: BS55_RS0102070 5,10-methylene- dehydrogenase: a [ribosomal UDP-N-acetylmuramoyl-L- a peptidoglycan a [protein]-α- biotin-carboxyl carrier hypoxanthine lyase: a 2-acyl-sn a sulfurated + glycerophosphoserine Ala (R)-glycerate chloride RS0108230 chloride diphosphate BS55_RS0126095 BS55_RS0112860 protein S12] alanyl-γ-D-glutamyl-meso-2,6- hypoglycin A glutathione menadione NADH H dimer (S. aureus) quercitrin a glycyl-[tRNA ] L-glutamate (S)-NADHX 3-oxoacyl-[acyl- protein assembly BS55_RS0124135 phosphoribosyltransferase: UMP BS55_RS0108140 acyl-CoA a phosphatidylcholine -glycero-3- tetrahydrofolate ATP GMP glutamine- reductase: 34 [sulfur carrier] L-aspartate 89 protein-glutamate O- glyoxylate/ carrier-protein] pyrimidine deoxyribonucleotides de novo biosynthesis I a queuosine dehydrogenase: cyclohydrolase: diaminopimeloyl-D-alanine biotin bifunctional hydrolyzing BS55_RS0121540 BS55_RS0120970 phosphocholine S-formylglutathione methyltransferase hydroxypyruvate reductase: a [biotin carboxyl- adenylo-succinate 4-hydroxy-3- AI-2 in tRNA BS55_RS0100865 BS55_RS0124845 penicillin-binding ADP-dependent GMP synthase: UDP NADH-quinone glycerophosphoryl Bacterial alpha- carrier protein]-L-lysine guanylate kinase: CTP methylbut-2-enyl IPP LD-carboxypeptidase: gamma- protein 2: D-tyrosyl-tRNA(Tyr) CheR: reductase A: NAD(P)H-hydratechloride RS0101685 chloride BS55_RS0104270 adenylosuccinate BS55_RS0100500 GMP [+ 6 isozymes] a 5,10- 30S ribosomal oxidoreductase: diester L-rhamnosidase: biotin--[acetyl-CoA- BS55_RS0117190 class 1b ribonucleoside- diphosphate phospholipase C, glutamyltransferase: deacylase: BS55_RS0111845 BS55_RS0111300 biotin--[acetyl-CoA- dehydratase/ 3-ketoacyl-ACP lyase: NTPase: BS55_RS27240 5-oxo-L-proline metabolism (2E,9Z)- methenyltetrahydrofolate protein S12 BS55_RS0109840 BS55_RS0116490 BS55_RS0118780 phosphodiesterase: BS55_RS28810 carboxylase] ligase: diphosphate reductase: reductase: phosphocholine- BS55_RS0110910 BS55_RS0114870 protein-glutamate O- D-glycerate carboxylase] ligase: NAD(P)H-hydrate reductase: BS55_RS0114020 GMP octadecenoyl-CoA methylthiotransferase LD-carboxypeptidase: BS55_RS0116500 D-alanyl-D-alanine BS55_RS0103790 [+ 4 isozymes] BS55_RS0116930 BS55_RS0122030 CDP BS55_RS0120970 isopentenyl- a [protein] with specific: bifunctional methyltransferase dehydrogenase: BS55_RS0116930 epimerase: BS55_RS0101970 xanthine and (2R,4S)-2-methyl-2,4- enoyl-CoA formate RimO: BS55_RS0117030 BS55_RS0106940 gamma- BS55_RS0116510 carboxypeptidase/ chloride RS0103980 chloride a [biotin carboxyl- GDP BS55_RS0122035 class 1b ribonucleoside- diphosphate an N-terminal BS55_RS0115330 5,10-methylene- [+ 2 isozymes] CheR: BS55_RS0102210 BS55_RS0101515 a (3R)-3- xanthosine salvage Delta-isomerase: dihydroxydihydrofuran-3-one hydratase: glutamyltransferase: BS55_RS0116525 D-alanyl-D-alanine- β carrier protein]-N AMP dUDP diphosphate reductase: L-glutamine [+ 2 isozymes] a 1,2-diacyl- tetrahydrofolate -L- Ala BS55_RS0125735 hydroxyoctanoyl- guanylate kinase: BS55_RS0121695 a phosphatidylcholine a [ribosomal UDP-N-acetyl-α-D-muramoyl- BS55_RS0114880 endopeptidase: quercetin a tRNA gly a [protein]-L- hydroxypyruvate biotinyl-5'- NADH 6 -biotinyl-L-lysine BS55_RS0122030 BS55_RS0117000 sn-glycerol dehydrogenase/ an unsulfurated [+ 2 isozymes] rhamnopyranose [acp] BS55_RS0117190 nucleoside-diphosphate 5'-deoxyadenosine protein S12]-3- D-ala L-alanyl-γ-D-glutamyl- BS55_RS0125200 sn-glycerol glutamate-O 5 adenylate glutaminyl-peptide (S)-3-hydroxy-(9Z) 5,10-methylene- met ser bifunctional kinase: BS55_RS0120965 BS55_RS0122035 xanthosine methylsulfanyl- [sulfur carrier] meso-2,6-diaminopimelate 3-phosphate L-fucose RS27460 L-fucose adenylate kinase: cyclotransferase: -octadecenoyl-CoA tetrahydrofolate -methyl-ester (2R,4S)-2-methyl-2,3,3,4- a [protein] with a 1-phosphatidyl- 89 UDP-3-O-[3- class 1b dCDP purine-nucleoside DMAPP L-aspartate hypoglycin B L-cysteinylglycine + BS55_RS0102160 GDP dUTP BS55_RS0105265 an N-terminal 3-hydroxyacyl-CoA a 1,2-diacyl- cyclohydrolase: NAD menadiol a peptidoglycan hydroxymyristoyl] N- a [biotin carboxyl- ribonucleoside- phosphorylase: tetrahydroxytetrahydrofuran 1D-myo-inositol nucleoside triphosphate nucleoside-diphosphate L-glutamate dehydrogenase: sn-glycerol BS55_RS0124845 with D,D cross- D-ala acetylglucosamine carrier-protein dimer]- diphosphate BS55_RS0121350 glutaminyl-peptide 4,5-bisphosphate L-fucose RS0122375 L-fucose 6 nucleoside- pyrophosphohydrolase: kinase: BS55_RS0120965 xanthine BS55_RS0121695 10 link (S. aureus) deacetylase/3- N -biotinyl-L-lysine reductase: ADP cyclotransferase: an N - diphosphate kinase: nucleoside- BS55_RS0100150 BS55_RS0121060 3-oxo-(9Z)- hydroxyacyl-ACP acetyl-CoA acetyl-CoA BS55_RS0122030 class 1b dCTP formyltetrahydrofolate BS55_RS0120965 diphosphate kinase: xanthine carboxylase: class 1b ribonucleoside- nucleotide octadecenoyl-CoA formyltetrahydrofolate UDP-N-acetyl-α-D-muramoyl- N-acetyl-D-glucosaminyl-N- an α(1,5)- (3R,5S)-3- dehydratase: carboxylase biotin BS55_RS0122035 phosphoribosyltransferase: 37 a [protein]- a D-aspartyl- BS55_RS0120965 diphosphate a [protein] with di-trans,octa-cis- γ an adenosine H O FAD γ-L-glutamyl- (R)-glycerate N-formyl- L-fucose RS0110710 L-fucose BS55_RS0102740 ribonucleoside- pyrophosphohydrolase: γ acetyl-CoA C- deformylase: L-alanyl- -D-glutamyl-L- acetylmuramoyl-L-alanyl-D-glutamyl- DMAPP diphosphate 2 L-arabinan gly asp hydroxy-1- BS55_RS0115115 carboxylase subunit: BS55_RS0100220 an N-terminal 5- -L-glutamyl undecaprenyl phosphate in tRNA L-threonine [tRNA ] GTP L-glutamate diphosphate reductase: BS55_RS0114875 glutathione acyltransferase: BS55_RS0114390 lysyl-D-alanyl-D-alanine 6-carboxy-L-lysyl-D-alanine D-alanine D-glycerate pyrroline-5- [+ 3 isozymes] BS55_RS0126070 oxo-L-proline 5-phosphate a (2E)-oct- a [carboxyl-carrier reductase: BS55_RS0122030 BS55_RS0121700 nucleoside triphosphate dehydrogenase: carboxylatepyrroline-5- dUMP XMP FAD:protein FMN alpha-L- 2-enoyl-[acp] 6 GTP BS55_RS0122035 formate pyrophosphohydrolase: BS55_RS0102210 protein dimer]-N - BS55_RS0122030 phospho-N- LD-carboxypeptidase: tRNA (adenosine(37)-N6) inorganic arabinofuranosidase: glutathione D-tyrosyl-tRNA(Tyr) N-formylglutamate carboxylate a sugar RS0111310 a sugar dGDP thymidylate synthase: (7Z)-hexadecenoyl-CoA transferase: BS55_RS0100150 octanoyl-[acyl- carboxybiotinyl-L-lysine BS55_RS0122035 acetylmuramoyl- BS55_RS0109840 -dimethylallyltransferase diphosphatase: BS55_RS0102775 synthetase: deacylase: glyoxylate/ amidohydrolase: reductase: BS55_RS0124275 BS55_RS0102495 nucleotide carrier-protein] acyl-CoA pentapeptide- LD-carboxypeptidase: MiaA: BS55_RS28120 BS55_RS0109680 BS55_RS0105390 BS55_RS0114870 hydroxypyruvate BS55_RS26780 BS55_RS0119810 long-chain fatty GTP FAD:protein FMN alpha-L- pyrophosphohydrolase: reductase: dADP dGDP dTMP 5-oxo-L-proline dehydrogenase: transferase: BS55_RS0106940 tRNA (adenosine(37)-N6) inorganic reductase A: Hyp acid activation Amino Acid Biosynthesis transferase: arabinofuranosidase: a sugar RS0121455 a sugar BS55_RS0107705 nucleoside- BS55_RS0100865 BS55_RS0124415 -dimethylallyltransferase diphosphatase: BS55_RS0114875 BS55_RS0111300 Amine and Polyamine BS55_RS26330 BS55_RS0122480 a long-chain diphosphate kinase: nucleoside- nucleoside- 5-oxoprolinase: MiaA: BS55_RS0122915 BS55_RS29090 norophthalmate asp GMP formate L-histidine biosynthesis [+ 6 isozymes] Degradation N-acetyl-D-glucosaminyl-N- tRNA D-aspartate hydroxypyruvate glu an octanoyl-[acp] fatty acid BS55_RS0120965 diphosphate kinase: diphosphate kinase: L-lysine biosynthesis I L-arginine biosynthesis III (via N-acetyl-L-citrulline) glycine biosynthesis II L-threonine BS55_RS0111100 undecaprenyl-diphospho-N- fatty acid biosynthesis long-chain fatty dTDP superpathway of branched chain amino acid biosynthesis L-homoserine (2E,7Z)- UMP acetylmuramoyl-L-alanyl-D- D-ala an α(1,5)- α-L- BS55_RS0120965 BS55_RS0120965 biosynthesis γ a sugar RS0109390 a sugar initiation (bacteria acid--CoA ligase: biosynthesis hexadecenoyl-CoA N-acetylglucosamine acetylmuramoyl-L-alanyl- -D- glutamyl-6-carboxy-L-lysine 6 37 a [protein]-FMN- glycine a [glycine-cleavage N -dimethylallyladenosine + L-arabinan arabinofuranose beta-ketoacyl- and plants) nucleoside-diphosphate PRPP glu degradation II glutamyl-L-lysyl- D-alanyl-D-alanine phosphate H AMP L-threonine BS55_RS0109775 pyruvate glu cleavage system complex H protein] N 6 - enoyl-CoA in tRNA ACP synthase II: dGTP dATP dGTP kinase: BS55_RS0120965 thr asp glycine acetyl-CoA [+ 2 isozymes] ATP asp protein GcvH: aminomethyldihydrolipoyl- L-homoserine hydratase: N-acetyl-D- BS55_RS0108425 a long-chain bifunctional cleavage system acetyl-CoA dTTP phosphoribosyltransferase: biosynthetic-type bifunctional BS55_RS0117370 L-lysine homoserine kinase: BS55_RS0121695 glucosamine a sugar RS0116925 a sugar beta-ketoacyl- fatty acyl-CoA threonine ammonia- aspartate kinase/ protein GcvH: N-acetylglucosamine carboxylase: BS55_RS0101780 acetolactate aspartate kinase/ BS55_RS0114090 (S)-3-hydroxy-(7Z) ACP synthase II: lyase IlvA: homoserine aminomethyl- BS55_RS0117370 kinase: UDP-N-acetyl-α-D- phosphoenol a [lipoyl-carrier dCDP BS55_RS0102740 synthase: homoserine O-phospho- -hexadecenoyl-CoA di-trans,octa-cis- a lipid II a peptidoglycan glycyl-glycine glutathione H O (R)-lipoate (R)-glycerate an L-cysteinyl- BS55_RS0114635 1-(5-phospho- BS55_RS0122060 dehydrogenase I: transferring glycine 6 37 BS55_RS0105780 muramoyl-L-alanyl-γ-D- glu a (6S)-5- 2 N -L-threonylcarbamoyladenosine GTP pyruvate protein]-L-lysine Pro class 1b [+ 3 isozymes] β BS55_RS0122105 N-acetyl-L- dehydrogenase I: glycine cleavage system L-homoserine undecaprenyl phosphate formyltetrahydrofolate dGDP dGTP ITP [tRNA ] a sugar -D-ribosyl)-ATP (2Z)-2-aminobut- BS55_RS0114095 dehydrogenase: -modified tRNA biosynthesis 3-hydroxyacyl-CoA N-acetylglucosamine glutamyl-L-lysyl-D-alanine glyoxylate/ a sugar RS0115650 a 3-oxodecanoyl- malonyl-CoA BS55_RS0122110 glutamate BS55_RS0114095 gly aminomethyltransferase nucleoside triphosphate nucleoside triphosphate ribonucleoside- bifunctional 2-enoate BS55_RS0117010 threonine synthase: dehydrogenase: kinase: monofunctional hydroxypyruvate [acp] [+ 2 isozymes] GcvT: BS55_RS0117105 gamma- lipoate-- pyrophosphohydrolase: pyrophosphohydrolase: diphosphate phosphoribosyl- acetylglutamate [+ 2 isozymes] BS55_RS0114085 BS55_RS0121695 BS55_RS0118675 phospho-N- biosynthetic bifunctional reductase A: Cys-tRNA(Pro) ACP S- (S)-2-acetolactate L-aspartyl-4-phosphate L-aspartyl- N-acetyl-D- glutamyltransferase: ribosome small protein ligase: BS55_RS0100150 BS55_RS0100150 reductase: 3-oxoacyl-[acyl- AMP cyclohydrolase/ kinase: ATP thr 3-oxo-(7Z)- folylpolyglutamate BS55_RS0111300 deacylase: malonyltransferase: 4-phosphate glucosamine acetylmuramoyl- peptidoglycan BS55_RS0110910 subunit-dependent pyruvate kinase: BS55_RS0105385 BS55_RS0122030a sugar RS0100950 a sugar carrier-protein] ketol-acid BS55_RS0119815 a [glycine-cleavage a [glycine-cleavage hexadecenoyl-CoA nucleotide nucleotide BS55_RS0116375 phosphoribosyl- aspartate- thr pentapeptide- transglycosylase: synthase/ GTPase A: BS55_RS0114650 D-glycerate BS55_RS0105375 BS55_RS0122035 reductoisomerase: complex H protein] N 6 6-phosphate gamma- reductase: ATP diphosphatase aspartate- complex H protein] acetyl-CoA C- transferase: BS55_RS0125475 dihydrofolate pyrophosphohydrolase: pyrophosphohydrolase: dehydrogenase: 2-iminobutanoate semialdehyde N-acetylglutamyl- hydrogencarbonate 6 N-acetylglucosamine- BS55_RS0116315 a [lipoyl-carrier CDP BS55_RS0104270 HisIE: BS55_RS0122095 semialdehyde N -lipoyl-L-lysine -dihydrolipoyl-L-lysine threonylcarbamoyl- glutamyltransferase: BS55_RS0114875 BS55_RS0114875 BS55_RS0102210 a malonyl-[acp] phosphate acyltransferase: BS55_RS0124415 synthase: 6 (2R)-2,3- dehydrogenase: 6-phosphate BS55_RS0114880 [+ 6 isozymes] protein]-N - a sugar RS0103305 a sugar 3-ketoacyl-ACP BS55_RS0125170 dehydrogenase: AMP synthase: BS55_RS0123310 dGMP IMP Pro BS55_RS0120945 carbamoyl- BS55_RS0121700 di-trans,octa-cis pyruvate hydroxypyruvate cys a tRNA dihydroxy-3- N-acetyl-gamma- BS55_RS0115190 deacetylase: a peptidoglycan lipoyl-L-lysine reductase: ketoacyl-ACP 1-(5-phospho-β- phosphate synthase BS55_RS0120945 undecaprenyl-diphospho-N -undecaprenyl dGTP methylbutanoate glutamyl-phosphate BS55_RS0115645 UMP + BS55_RS0101970 synthase III: L-aspartate 4- (5Z)-tetradecenoyl-CoA γ γ-L-glutamyl- phosphate H D-ribosyl)-AMP large subunit: L-aspartate 4- L-glutamate threonylcarbamoyl- -acetylmuramoyl-L-alanyl- - diphosphate GDP a (3R)-3- BS55_RS0114290 dihydroxy-acid semialdehyde reductase: N-acetylglucosamine- L-cysteinylglycine a (6S)-5- 2-oxobutanoate BS55_RS0124900 semialdehyde glycine biosynthesis III AMP synthase: D-glutamyl-L-lysyl- D-alanine glycylglycine a sugar RS0106760 a sugar hydroxydecanoyl- Carbohydrate Biosynthesis bifunctional dehydratase: BS55_RS0119635 acyl-CoA 6-phosphate formyltetrahydrofolate [+ 2 isozymes] dihydrodipicolinate glutamine- cleavage system BS55_RS0125665 [acp] phosphoribosyl- biosynthetic-type BS55_RS0111630 N-acetyl-L- bifunctional dehydrogenase: deacetylase: synthetase: hydrolyzing protein GcvH: 2-oxoglutarate gluconeogenesis I AMP cyclohydrolase/ acetolactate glutamate 5- aspartate kinase/ BS55_RS0101930 BS55_RS28510 bifunctional an acetoacetyl-[acp] dihydroxy-acid glutamate 2503 α dTDP-L-rhamnose BS55_RS0124600 (L-threonylcarbamoyl) adenine -Kdo-(2->4) sn-glycero-3- 3-benzyl-3,6 - D-glycero-D- 1939 UDP trehalose biosynthesis I phosphoribosyl- synthase: semialdehyde carbamoyl- homoserine BS55_RS0117370 [+ 6 isozymes] sn-glycerol ADP-α-D-glucose phosphoenol a uracil a sugar RS0107170 a sugar UDP-3-O-[3- dehydratase: synthase: gltD adenylate D-glucosamine α sec (R)-NADPHX acyl-CoA hydrolysis biosynthesis [+ 2 isozymes] N-acetylornithine phosphate synthase [+ 2 isozymes] in 23S rRNA - -Kdo-(2->6) a myristoyl-[acp] phospho-N- bis(cysteinylglycine) pyruvate manno-heptose ser a tRNA in 23S rRNA hydroxymyristoyl] N- ATP diphosphatase BS55_RS0122105 BS55_RS0122115 (2S,4S)-4- dehydrogenase I: BS55_RS0125575 (2E,5Z)- 6-phosphate 3-phosphate dADP dATP class 1b (S)-malate α D-glucopyranose trehalose aminotransferase: tRNA (adenosine(37)-N6)- -(lauroyl)-lipid (arachidonoyl) - 6-(hydroxymethyl) 7-phosphate 23S rRNA bifunctional -D- HisIE: BS55_RS0122110 small subunit: BS55_RS0114095 tetradecenoyl-CoA bifunctional heptose ribonucleoside- acetylglucosamine a 2,3,4-saturated UDP-α-D-glucose biosynthesis V 3-methyl-2- hydroxy-2,3,4,5- NADP-specific IV (E. coli) -diketopiperazine nucleoside triphosphate (uracil(1939)-C(5)) glucopyranose 6-phosphate BS55_RS0119825 BS55_RS0102140 threonylcarbamoyltransferase A ethanolamine 7-phosphate ADP-dependent BS55_RS0125170 23S rRNA diphosphate + + deacetylase/3- fatty acyl CoA (S)-2-aceto-2- oxobutanoate tetrahydrodipicolinate homoserine glutamate pyrophosphohydrolase: -methyltransferase H RS0123295 H 1-phosphate complex ATPase subunit type ∆ 3 2 glucosylglycerol- kinase/heptose NAD(P)H-hydrate hydroxyacyl-ACP acyl-CoA glucose-1-phosphate a glycogen 1-(5-phospho-β-D-ribosyl)- 4-hydroxy- N-acetyl-L- carbamoyl -cis-∆ -trans-enoyl- enoyl-CoA (adenine(2503)-C(2) BS55_RS0100150 serine--tRNA ligase: reductase: hydroxybutanoate dehydrogenase: dehydrogenase: 1 TsaE: BS55_RS0115135 α urea degradation II phosphate RlmD: dehydratase/ thioesterase: bifunctional 5-[(5-phosphoribosylamino) ornithine L-homocysteine biosynthesis CoA isomerase: hydratase: -D-glucosamine )-methyltransferase lipid A biosynthesis glycerophosphodiester membrane pyruvate kinase: 1-phosphate BS55_RS0124185 BS55_RS0122030 dehydratase: malate thymidylyltransferase isoamylase: ketol-acid 2-isopropylmalate branched-chain tetrahydrodipicolinate phosphate BS55_RS0100935 BS55_RS0112670 synthase: nucleotide BS55_RS0114940 NAD(P)H-hydrate BS55_RS0113430 alpha,alpha- methylideneamino]imidazole- [+ 2 isozymes] BS55_RS0121695 BS55_RS0121695 6-phosphate RlmN: acyltransferase: phosphodiesterase: dipeptidase: BS55_RS0114650 adenyltransferase: a 5- BS55_RS0122035 BS55_RS0115115 dehydrogenase: RfbA: BS55_RS0106020 BS55_RS0103845 synthase: reductase: 6 pyrophosphohydrolase: reductoisomerase: amino acid an N -L- urea BS55_RS0115755 1939 epimerase: + + [+ 5 isozymes] trehalose-phosphate 4-carboxamide glu glucosamine- BS55_RS0116715 BS55_RS0118230 BS55_RS0100330 BS55_RS0107255 D-glycero-β-D-BS55_RS29235 methyluracil H RS0116440 H BS55_RS0113560 glucose-1-phosphate a maltodextrin BS55_RS27070 BS55_RS0121430 acetylornithine L-homoserine 37 BS55_RS0114875 dUDP a (2E)-dec- a 2,3,4-saturated synthase (UDP- BS55_RS0122095 transaminase: L-homoserine threonylcarbamoyladenine urease: BS55_RS0101515 1-(5-phosphoribosyl) carbamoyltransferase: (3E,5Z)-tetradeca- (S)-3-hydroxy-(5Z) 6-phosphate [+ 2 isozymes] manno-heptose an L-seryl- in 23S rRNA 2-enoyl-[acp] fatty acid thymidylyltransferase (R)-2,3-dihydroxy- 2-isopropylmalate BS55_RS0122120 (S)-2,3,4,5- in tRNA α dAMP malate forming)/trehalose- malto- -5-((5- 3,5-dienoyl-CoA -tetradecenoyl-CoA deaminase: BS55_RS0114990 α-D-Kdo-(2->4) 2-O-( -D- 3-benzyl-3,6 - 1,7-bisphosphate [tRNA sec ] (S)-NADPHX RfbA: BS55_RS0106830 tetrahydrodipicolinate BS55_RS0119820 homoserine O- 2503 pyruvate dTDP-α-D-glucose phosphatase: 3-methylpentanoate synthase: branched-chain BS55_RS0114995 a 2-methyladenine -α-D-Kdo-(2->6) glucopyranosyl) bis(cysteinyl)- 6- dATP decanoyl-[acyl- dehydrogenase: oligosyltrehalose phosphoribosylamino) superpathway of L-serine acetyltransferase: acyl-CoA 3-hydroxyacyl-CoA BS55_RS0115655 5'-deoxyadenosine met acyl-carrier protein ADP gly F0F1 ATP BS55_RS0108130 dihydroxy-acid BS55_RS28600 amino acid 2,3,4,5- BS55_RS0115000 in 23S rRNA -sn-glycerol anandamide sn-glycerol + + carrier-protein] oxaloacetate BS55_RS0125195 synthase: methylideneamino) and glycine biosynthesis I thioesterase: dehydrogenase: -lipid A (E. coli) (hydroxymethyl) H synthase H dTDP-glucose dehydratase: aminotransferase: tetrahydropyridine- N-acetyl- BS55_RS0100930 glucosamine- 3-phosphate 3-phosphate reductase: BS55_RS0103850 imidazole-4- BS55_RS0113430 BS55_RS0121695 urease: -diketopiperazine 4,6-dehydratase: α,α-trehalose (2S)-2- BS55_RS0122920 2,6-dicarboxylate N- L-citrulline 3-phospho- O-acetyl-L- periplasmic disulfide bond formation 6-phosphate BS55_RS0107705 pyruvate a maltooligosyl- carboxamide isomerase: BS55_RS0111630 alanine racemization BS55_RS0102400 BS55_RS0106035 succinyltransferase: (R)-glycerate hydrogen sulfide [+ 5 isozymes] 3-oxo-(5Z)- deaminase: phosphoenolpyruvate 6-phosphate dihydroxy-acid isopropylmalate homoserine BS55_RS0102405 UDP-N-acetyl-D- trehalose BS55_RS0125160 3-phosphoglycerate two reduced a [DsbA protein] a [DsbB protein] (3E,5Z)- tetradecenoyl-CoA BS55_RS0107235 an N 6 -L- (1S,2R)-1- an sn-glycero-3- an N-terminal- 6-O-α-mycolyl- F0F1 ATP carboxykinase (ATP) dTDP-glucose 3-isopropylmalate BS55_RS0115185 an electron- α α-Kdo 2+ a [protein]-L- succinate + + a decanoyl-[acp] dehydratase: dehydrogenase: cysteine residues BS55_RS0102410 a sulfurated 37 a [ThiI sulfur-carrier an L-rhamnoside CTP Mg protoporphyrin IX a pectin H H 4,6-dehydratase: glucosamine biosynthesis I bifunctional malto- phosphoribulosylformimino- val ala carrying a with reduced L- tetradecadienoate acetyl-CoA C- threonylcarbamoyladenine ser C-(indol-3- cys phospho-N-(acyl) L-methionyl-L- trehalose 6- β-isoaspartate semialdehyde synthase : BS55_RS0100355 BS55_RS0122115 dehydratase: N-succinyl-2-amino- BS55_RS0104195 transfer quinone F6P ammonium [sulfur carrier] protein]-L-cysteine alpha,alpha- oligosyltrehalose O-acetylhomoserine in a protein disulfide bond cysteine residues acyltransferase: in tRNA yl)glycerol ethanolamine cysteinyl-[protein] phosphate protein-L- NAD-dependent beta-ketoacyl- BS55_RS0106845 D-glucopyranose AICAR-phosphate BS55_RS0122080 6-ketopimelate bifunctional UDP- bifunctional trehalose-phosphate trehalohydrolase: (S)-3-methyl-2- phosphoglycerate aminocarboxypropyltransferase/ BS55_RS0121700 3-phosphate isoaspartate(D- succinate- ACP synthase II: dTDP-4-dehydro- 6-phosphate BS55_RS0122090 N-succinyldiaminopimelate L-citrulline N-acetylmuramoyl- Bacterial alpha- 3-deoxy-manno- alpha,alpha- magnesium pectinesterase: phosphoenolpyruvate glucose-6- synthase (UDP- BS55_RS26640 oxopentanoate dehydrogenase: cysteine synthase: aspartate) O- semialdehyde BS55_RS0108425 6-deoxy-α-D- imidazole glycerol tripeptide:D-alanyl- (3Z)-dodec- tRNA (N(6)-L- cysteine L-rhamnosidase: glycerophosphoryl type I methionyl octulosonate trehalose-phosphate chelatase: BS55_RS0116805 sulfate RS0121710 sulfate phosphate forming)/trehalose- aminotransferase: BS55_RS0122885 BS55_RS0100925 tryptophan synthase: methyltransferase: dehydrogenase: glucopyranose α α phosphate synthase: branched-chain 2-isopropylmaleate argininosuccinate D-alanine ligase/ 3-enoyl-CoA threonylcarbamoyladenosine(37) desulfurase: BS55_RS28810 diester aminopeptidase: cytidylyltransferase: synthase (UDP- BS55_RS0103635 beta-ketoacyl- phosphopyruvate isomerase: phosphatase: , -trehalose BS55_RS0104200 3-phosphooxypyruvate BS55_RS0125790 BS55_RS0123370 gabD dTDP-4- BS55_RS0125155 amino acid synthase: alanine racemase: ∆3,∆2-enoyl- -C(2))- methylthiotransferase BS55_RS0118500 [+ 4 isozymes] phosphodiesterase: BS55_RS0120105 BS55_RS0100165 forming)/trehalose- a protein L-β- ACP synthase II: hydratase: BS55_RS0107055 BS55_RS0108130 3-isopropylmalate N-succinyl-L,L-2,6- L-tryptophan biosynthesis BS55_RS0125795 dehydrorhamnose BS55_RS0125165 transaminase: BS55_RS0119640 BS55_RS0118575 CoA isomerase: MtaB: BS55_RS0124270 [+ 4 isozymes] BS55_RS0103790 [+ 2 isozymes] phosphatase: isoaspartate succinate BS55_RS0114635 BS55_RS0102135 F6P dehydratase: diaminopimelate 3-phosphoserine/ L-homocysteine Mg- MeOH a pectate sulfite RS0115580 sulfite a 3- 3,5-epimerase: α,α-trehalose BS55_RS0122120 L-arginino- phosphohydroxythreonine D-ala BS55_RS0121695 D-glyceraldehyde β-L- a non [+ 2 isozymes] BS55_RS0108130 α-methyl ester BS55_RS0122080 CMP-Kdo α α protoporphyrin 2-phospho-D-glycerate D-erythro-1- branched-chain succinate chorismate 6 , '-trehalose oxododecanoyl- BS55_RS0106030 glutamine--fructose- GDP-L-fucose AICAR BS55_RS0122090 transaminase: (2E)-dodec- a 2-methylsulfanyl-N -L- 3-phosphate trp a [ThiI sulfur- rhamnopyranose rhamnosylated an N-terminal L- (imidazol-4- 37 an unsulfurated 6-α-mycolate [acp] 6-phosphate biosynthesis I (from amino acid argininosuccinate BS55_RS0104200 2-enoyl-CoA threonylcarbamoyladenine 5'-deoxyadenosine met ala carrier protein]-S- rhamnosyl met 2,3-bisphosphoglycerate- dTDP-4- (2R,3S)-3- anthranilate [sulfur carrier] sn-glycerol an N- cysteinyl-[protein] a reduced 3-oxoacyl-[acyl- transaminase GDP-D-mannose) yl)-glycerol aminotransferase: lyase: in tRNA sulfanyl-L-cysteine acceptor independent dehydrorhamnose α isopropylmalate synthase: O-phospho- L-alanine hypothetical Alcohol Degradation 3-phosphate acylethanolamine H O c-type carrier-protein] (isomerizing): GDP- -D- 3-phosphate BS55_RS0122920 L,L-diaminopimelate BS55_RS0119545 2 phosphoglycerate 3,5-epimerase: bifunctional histidinol- 3-isopropylmalate BS55_RS0114820 L-serine biosynthesis III protein: RS0105855 cytochrome reductase: BS55_RS0100660 mannose L-cysteine biosynthesis I an oxidized mutase: BS55_RS0106840 GDP-mannose DsbA family BS55_RS26340 phosphatase/ dehydrogenase: diaminopimelate 4 O c-type BS55_RS0104270 ile arg anthranilate glycerol and glycerophosphodiester degradation β 2 dTDP-4-dehydro- D-glucosamine 4,6-dehydratase: cys a mature peptidoglycan (meso DNA combined N -( -N-acetyl- a double BS55_RS0110970 imidazoleglycerol- BS55_RS0122070 epimerase: oxidoreductase: enoyl-CoA an acyl-[acyl- an unsulfurated a peptide with a citrate acetylxylan cytochromea reduced 3-ketoacyl-ACP β-L-rhamnose 6-phosphate BS55_RS0119745 -diaminopimelate containing) cys with exogenous D-glucosaminyl) carbonic acid an unfolded a protein GDP-4-dehydro- phosphate BS55_RS0121500 anthranilate ser cysteine BS55_RS0100340 hydratase: carrier protein] stranded DNA H O c-type reductase: 3-phospho-(R)-glycerate (2S)-2-isopropyl- a [DsbA protein] a [DsbB protein] glycerol [sulfur carrier] leader sequence -L-asparagine protein 2 dTDP-4- phosphoglucosamine α-D-rhamnose dehydratase HisB: desulfurase: an intra- an electron- BS55_RS0121695 DNA to form a bifunctional 2- DNA gyrase/ ATP-dependent cytochrome 3-oxosuccinate phosphoribosyltransferase: with reduced L- carrying a RS0125430 an oxidized BS55_RS0101970 dehydrorhamnose mutase: meso-diaminopimelate ser serine acetyltransferase: BS55_RS0102235 recombinational methylcitrate topoisomerase chaperonin GroEL: phosphoglycerate GDP-L-fucose BS55_RS0125150 BS55_RS0125805 protein disulfide transfer quinol (S)-3- lytic transglycosylase Holliday junction acetylxylan esterase: Clp protease O c-type a (3R)-3- BS55_RS0124735 cysteine residues disulfide bond a glycerophosphodiester junction dehydratase/ carbonic anhydrase: IV subunit A: 2 reductase: BS55_RS0110870 synthase: 3-(imidazol-4- [+ 4 isozymes] hydroxydodecanoyl-CoA domain-containing phosphate cysteine signal peptidase I: resolvase RuvX: N(4)-(beta-N- BS55_RS0102915 BS55_RS0114890 proteolytic subunit: hydroxydodecanoyl- kinase: N-(5-phosphoribosyl) acytochrome reduced BS55_RS0106025 α-D-glucosamine yl)-2-oxopropyl L-tyrosine diaminopimelate L-proline biosynthesis serine O-acetyl-L-serine ala acyltransferase PlsX: BS55_RS0105935 acetylglucosaminyl) aconitate hydratase: BS55_RS0121605 BS55_RS0109880 BS55_RS0108405 BS55_RS0105745 BS55_RS0120865 -anthranilate 3-hydroxyacyl-CoA protein: BS55_RS27815 desulfurase: BS55_RS0120955 acetylxylan esterase: H O c-type [acp] biosynthesis I decarboxylase: I (from L-glutamate) BS55_RS0100875 [+ 2 isozymes] 2 dTDP-4- 1-phosphate GDP-4-dehydro- phosphate 4-methyl-2- hydroxymethyltransferase: glyA glycerophosphoryl glycerol endolytic transglycosylase BS55_RS0126085 BS55_RS0118500 signal peptidase crossover junction -L-asparaginase: BS55_RS0122285 a protein a peptide cytochrome bifunctional BS55_RS0104185 phosphoribosylanthranilate O-acetylhomoserine dehydrogenase/ a negatively RS0125450 an oxidized 13-DPG dehydrorhamnose 6-deoxy-β- histidinol-phosphate oxopentanoate diester MltG: BS55_RS0124300 [+ 4 isozymes] I: BS55_RS28535 endodeoxyribonuclease BS55_RS0109870 [+ 3 isozymes] UDP-3-O-[3- chorismate isomerase: BS55_RS0125800 aminocarboxypropyltransferase/ N-end rule pathway I (prokaryotic) enoyl-CoA resolution of supercoiled DNA O c-type transaminase: D-threo-isocitrate CO H O 2 reductase: L-galactose branched-chain ammonia glu gly phosphodiesterase: glycerol RuvC: BS55_RS0119790 2 2 hydroxymyristoyl] N- glycogen biosynthesis I (from ADP-D-Glucose) lys cysteine synthase: hydratase recombinational cytochromea reduced glyceraldehyde- BS55_RS0106835 GDP-L-fucose BS55_RS0125145 assimilation cycle III 1-(2- leucyl/phenylalanyl- BS55_RS0103790 acyl-carrier protein an acyl phosphate acetate xylan acetylglucosamine N-acetyl-α-D- amino acid glutamate 5-kinase: family protein: kinase GlpK: a mature peptidoglycan with (L- a mature peptidoglycan strand junction N-acetyl-β- H O c-type β synthase: carboxyphenylamino) L-arginine degradation BS55_RS0100925 tRNA--protein a sulfurated 2 3-phosphate dTDP- -L- glucosamine D-glucopyranose L-histidinol transaminase: BS55_RS0124950 Glycolysis BS55_RS0121695 [+ 2 isozymes] BS55_RS0105570 alanyl-γ-D-glutamyl-meso-2,6- (non-reducing terminus) ala a leader sequence a peptide formation of two asp glucosaminylamine cytochrome deacetylase/3- prephenate γ -1-deoxy-D-ribulose I (arginase pathway) cysteine synthase [sulfur carrier] RS0125425 an oxidized triose-phosphate dehydrogenase: rhamnose BS55_RS0120865 phosphate BS55_RS0122120 -L-glutamyl transferase: diaminopimeloyl-D-alanine) tetrapeptide intact strands hydroxyacyl-ACP 1-phosphate 6-phosphate ammonium glu 5-phosphate a [protein] O c-type isomerase: BS55_RS0115070 5-phosphate CysM: BS55_RS0124730 BS55_RS0119560 3-oxododecanoyl-CoA 2 dehydratase: phospho- GDP-β-L-fucose bifunctional histidinol- prephenate branched-chain glycolysis I (from glucose 6-phosphate) an N-terminal N-terminal L- sn-glycerol BS55_RS0118460 indole-3-glycerol arg cytochrome BS55_RS0115115 D-glyceraldehyde dehydrogenase: amino acid glutamate-5- arginyl-[protein] 3-phosphate DHAP sugar mutase: phosphatase/ phosphate cys leucyl-L-arginine acetyl-CoA C- 6 37 a methylated an N-formyl-L- a 2'- 6-O-trans- 6 1498 3-phosphate glutamine semialdehyde arginase: D-glucopyranose a sulfurated N -dimethylallyladenosine a nucleoside a [histone]-N - luteolin 7-O-β- a uracil UDP-N-acetyl- BS55_RS0116985 imidazoleglycerol- BS55_RS0102280 aminotransferase: synthase TrpC: acyltransferase: 2-oxoglutarate nucleobase methionylaminoacyl- deoxyribonucleoside a ribonucleic acid methoxy-mycolyl- asp O-ureido-L- L-dopa met a (2E)-dodec- synthetase: dehydrogenase: BS55_RS0107905 6-phosphate [sulfur carrier] in tRNA [DNA] triphosphate acetyl-L-lysine D-glucuronide in 16S rRNA α-D-glucosamine α-D- phosphate 3-(4- BS55_RS0122920 BS55_RS0114835 BS55_RS0121700 5'-triphosphate trehalose 6- homoserine 16S rRNA 2-enoyl-[acp] superpathway of L- leucyl/phenylalanyl- within DNA tRNA 4,5-DOPA methionine- dehydratase HisB: hydroxyphenyl) BS55_RS0100910 BS55_RS0124955 L-ornithine glucopyranose (1S,2R)-1-C-(indol-3- glucose-6- tRNA--protein phosphate bifunctional (uracil(1498)-N(3))- R-sulfoxide dodecanoyl-[acyl- pyruvate asparagine biosynthesis decanoyl-CoA dioxygenase class I fructose- 1-phosphate BS55_RS0125150 leu L-glutamate-5- phosphate transferase: DHAP alpha-ketoglutarate- DNA polymerase DNA-directed alpha,alpha- histone deacetylase: argininosuccinate beta-glucuronidase: methyltransferase: yl)glycerol 3-phosphate ornithine--oxo-acid tRNA (N6-isopentenyl peptide extradiol: reductase: carrier-protein] bisphosphate glucose-1-phosphate semialdehyde a [protein] dependent BS55_RS0102115 BS55_RS0123870 BS55_RS0109690 PRPP biosynthesis gln isomerase: BS55_RS0119560 acyl-CoA adenosine(37)-C2)- deformylase: III subunit epsilon: RNA polymerase trehalose-phosphate synthase: an N 3 - BS55_RS0118930 BS55_RS28915 reductase: histidinol tryptophan synthase: transaminase: asp an N-terminal N-terminal L- aldolase: adenylyltransferase: BS55_RS0107055 dioxygenase AlkB: BS55_RS27105 subunit omega: synthase (UDP- BS55_RS0119640 1498 L-methionine- BS55_RS0107900 L-lysyl-[protein] dehydrogenase: methylthiotransferase BS55_RS0103880 methyluracil 4,5-seco-dopa BS55_RS0107705 BS55_RS0124190 BS55_RS0104035 BS55_RS0125790 leucyl-L-lysine BS55_RS0108445 BS55_RS0116240 forming)/trehalose- (R)-S-oxide D-ribose 5- histidinol glutamate BS55_RS0100865 MiaB: BS55_RS0114920 [+ 3 isozymes] [+ 10 isozymes] in 16S rRNA phosphate a (1->4)- tyr synthase: gltD BS55_RS0125795 L-glutamate-5- phosphatase: β-D-glucuronate class II fructose- α dehydrogenase: asparagine asparagine F6P [+ 6 isozymes] [+ 2 isozymes] acetate a [histone]-L-lysine luteolin a dodecanoyl-[acp] ribose-phosphate ADP- -D-glucose semialdehyde α-D-glucan BS55_RS0125575 (S)-1-pyrroline- ser 6 a nucleobase trehalose- BS55_RS0108130 canavaninosuccinate bisphosphate pyrophosphokinase: BS55_RS0101785 indole synthase synthase 2-methylsulfanyl-N - formaldehyde succinate 5-carboxylate (2E)-dec-2-enoyl-CoA 5'-deoxyadenosine 37 an unsulfurated within DNA a L-methionylaminoacyl- [DNA] trans-methoxy- aldolase: BS55_RS0123235 starch synthase: L-glutamate gamma- B: asnB B: asnB 6-phosphofructokinase: dimethylallyladenosine met formate histidinal glu class 1 fructose- [sulfur carrier] a ribonucleic acid mono-mycolate beta-ketoacyl- BS55_RS0124795 PRPP pyrroline-5- semialdehyde BS55_RS0116915 in tRNA tRNA BS55_RS0122680 tryptophan synthase: aspartate-- trans-∆ 2 -decenoyl- carboxylate dehydrogenase: bisphosphatase: ACP synthase II: histidinol BS55_RS0125790 ammonia ligase: 6-phosphofructokinase: CoA hydratase: a (1->4)- reductase: BS55_RS0119690 asn BS55_RS0103950 BS55_RS0108425 α dehydrogenase: BS55_RS0102245 BS55_RS0100690 -D-glucan BS55_RS0125795 BS55_RS26340 GDP-α-D- trans,octacis a thiocarboxylated a 2'- 1618 a (1->4)- laurate β BS55_RS0119810 a uridine 34 sn-glycero-3- a 5'-half-tRNA adenine a [protein]- beta-ketoacyl- -D-fructose 1,6- BS55_RS0101785 class I fructose- enoyl-CoA [SAMP] C- [DNA] deoxyribonucleoside a cytidine 34 lys oxaloacetate roseoflavin α 1,4-alpha-glucan glu β-D-fructose 1,6- mannose -decaprenyl in tRNA [DNA] phosphoethanolamine a 3'-half-tRNA molecule with in 23S rRNA L-tyrosine -D-glucan ACP synthase II: long-chain fatty bisphosphate bisphosphate in tRNA Ile2 1,4-alpha-glucan branching pro bisphosphate hydratase: phosphate terminal glycine 5'-triphosphate molecule with a 2',3'-cyclic 23S rRNA citrate synthase: polysaccharide bifunctional BS55_RS0114635 acid--CoA ligase: his trp asn branching class 1 fructose- protein GlgB: aldolase: BS55_RS0121695 a 5'-OH end phosphate end (adenine(1618)-N(6) BS55_RS0123195 biosynthesis riboflavin kinase/ BS55_RS0100215 bisphosphatase: polyprenol exodeoxyribonuclease glycerophosphoryl protein GlgB: BS55_RS26670 BS55_RS0124190 (S)-3- tRNA 2- DNA polymerase )-methyltransferase tRNA lysidine(34) 2-methylcitrate tyrosine autokinase: FAD synthetase: a 3-oxotetradecanoyl- [+ 2 isozymes] BS55_RS0103950 Respiration monophosphomannose thiouridine(34) III: BS55_RS0112175 diester RlmF: synthase: BS55_RS0106755 BS55_RS0101600 BS55_RS26670 class II fructose- hydroxydecanoyl-CoA III subunit epsilon: synthetase TilS: a [protein]- a (1,6)-α-D- [acp] a glycogen synthase: synthase MnmA: exodeoxyribonuclease phosphodiesterase: 2'-5' RNA ligase: BS55_RS0114435 BS55_RS0100880 roseoflavin F6P α bisphosphate (S)-3- BS55_RS27105 6 BS55_RS0125635 L-tyrosine glucosyl-(1,4) lauroyl-CoA UDP- -D-galactose 2-oxoglutarate decarboxylation to succinyl-CoA BS55_RS0112545 III: BS55_RS0121525 BS55_RS0103790 BS55_RS0105205 an N - 1,2- 5'-phosphate DHAP aldolase: BS55_RS0110810 1618 3-oxoacyl-[acyl- biosynthesis hydroxydecanoyl- [+ 10 isozymes] methyladenine dihydroxypropane- phosphate -α-glucan glucose-6- BS55_RS0124795 [+ 2 isozymes] carrier-protein] a [2-oxoglutarate CoA trans,octacis- in 23S rRNA a lysidine 34 1,2,3-tricarboxylate phosphate α a [SAMP] C- a 2-thiouridine 34 a 2'- reductase: UDP- -D-glucose dehydrogenase dehydrogenase: decaprenylphospho- [DNA] in tRNA Ile2 triose-phosphate GDP deoxyribonucleoside a ligated tRNA BS55_RS0104270 isomerase: UDP-glucose 4- 6 BS55_RS0121695 β terminal glycine in tRNA [DNA] sn-glycerol E2 protein] N 2-oxoglutarate -D-mannose 5'-monophosphate ethanolamine with a 2'-5' linkage BS55_RS0107055 epimerase GalE: isomerase: 3-phosphate 3-ketoacyl-ACP -lipoyl-L-lysine dehydrogenase stearate biosynthesis D-glucopyranose BS55_RS0115085 BS55_RS0118460 3-oxodecanoyl-CoA reductase: 2-oxoglutarate E1 component: II (bacteria and plants) 6-phosphate UDP-α-D-galactose BS55_RS0101970 dehydrogenase BS55_RS0113500 acetyl-CoA C- D-glyceraldehyde 7,8-dihydrofolate a 1-acyl-2- cyclic dTTP a [protein]-L- a (3R)-3- acyltransferase: + a homogalacturonan a ribonucleoside a phosphate E1 component: SAM NADPH H glycerophosphoglycerol arachidonoyl- dehypoxanthine DHAP a protein hydroxytetradecanoyl- a palmitoyl-[acp] 3-phosphate GTP monoglutamate nucleoside triphosphate diphosphate methionine monoester BS55_RS0113500 BS55_RS0121700 futalosine [acp] Cofactor, Carrier, and Vitamin Biosynthesis sn-glycerol class 1b NAD(P)H- peptide-methionine alkaline beta-ketoacyl- glyceraldehyde- [+ 2 isozymes]a [2-oxoglutarate a [2-oxoglutarate CTP pyrophosphohydrolase: hydroxymyristoyl- octanoyl-CoA 3-phosphate ribonucleoside- dependent glycerol- (S)-S-oxide phosphatase: endopeptidase La: ACP synthase II: 3-phosphate dehydrogenase dehydrogenase dihydrofolate pectate lyase: glycerophosphodiester BS55_RS0100150 ACP dehydratase: 1,4-dihydroxy- diphosphate 3-phosphate reductase MsrA: BS55_RS0112435 BS55_RS0110940 BS55_RS0108425 [2Fe-2S] iron-sulfur cluster biosynthesis 6 6 reductase: BS55_RS28645 flavin biosynthesis I (bacteria and plants) superpathway of tetrahydrofolate biosynthesis superpathway of coenzyme A biosynthesis I (bacteria) heme b biosynthesis heme a biosynthesis pyridoxal 5'-phosphate biosynthesis I NAD de novo biosynthesis thiamine diphosphate dehydrogenase: E2 protein] N E2 protein] N -S- acyl-CoA GTP 3',8- phosphodiesterase: nucleotide BS55_RS0109875 BS55_RS0103745 menaquinol-9 biosynthesis phosphatidate 6-naphthoate reductase: dehydrogenase: a protein-L- [+ 2 isozymes] beta-ketoacyl- I (aerobic) I (from aspartate) BS55_RS0115070 -dihydrolipoyl- succinyldihydrolipoyl- dehydrogenase: BS55_RS0100395 pectate lyase: BS55_RS0100330 pyrophosphohydrolase: biosynthesis II (Bacillus) cyclase MoaA: cytidylyltransferase: synthase: BS55_RS0122030 BS55_RS0111995 methionine- an alcohol a peptide bifunctional ACP synthase II: D-erythrose L-lysine L-lysine [+ 3 isozymes] BS55_RS0116790 BS55_RS0114875 L-cysteine desulfurase 3-methyl-2- a 5,10- 2-(2-carboxy-4- BS55_RS0100865 BS55_RS0115570 [+ 2 isozymes] BS55_RS0117355 BS55_RS0117155 BS55_RS0122035 sn-glycerol UDP-3-O-[3- BS55_RS0114635 protoheme demethylmenaquinol-9 a 2'- (S)-S-oxide a 3-oxooctadecanoyl- GTP GTP oxobutanoate methylenetetrahydrofolate uroporphyrinogen-III 4-phosphate asp 13-DPG [+ 6 isozymes] dTMP 3-phosphate hydroxymyristoyl] N- protoheme IX bifunctional HMP-PP methylthiazol-5- an unsaturated deoxyribonucleoside [acp] cysteine uroporphyrinogen (8S)-3',8-cyclo-7,8- : L-aspartate oxidase: yl)ethyl phosphate 5,6,7,8- + a homogalacturonan glycerol sn-glycerol a CDP-1-acyl- acetylglucosamine 3-methyl-2-oxobutanoate decarboxylase: demethylmenaquinone (2E)-oct-2-enoyl-CoA 5'-deoxyadenosine NADP pectate 1,4-dihydroxy- an unknown 5'-diphosphate desulfurase: bifunctional GTP cyclohydrolase BS55_RS0125440 2-oxoglutarate dihydroguanosine met tetrahydrofolate 2-arachidonoyl- deacetylase/3- 3-oxoacyl-[acyl- hydroxymethyltransferase: BS55_RS0114250 methyltransferase/2- BS55_RS0117280 phosphoglycerate oligosaccharide 3-phosphate 6-naphthoate compound BS55_RS0102235 3,4-dihydroxy- I FolE: ferroheme o 4-phospho- thiamine phosphate dehydrogenase 5'-triphosphate hydroxyacyl-ACP carrier-protein] coproporphyrinogen III methoxy-6-polyprenyl-1,4- 2-iminosuccinate kinase: hypothetical glycerol [+ 4 isozymes] BS55_RS0100520 synthase: dehydratase: reductase: 2-butanone- BS55_RS0117395 D-erythronate benzoquinol methylase BS55_RS0105745 E1 component: protein: 4-phosphate 7,8- heme A synthase: quinolinate BS55_RS0100745 BS55_RS0113500 BS55_RS0104270 an S-sulfanyl-[L- oxygen-dependent BS55_RS26340 4 BS55_RS0115115 asp UbiE: BS55_RS0101660 an O - luteolin 7-O-[β-D- DNA with adenine:7,8- 6-O-trans-keto- 2251 38- synthase/GTP dihydroneopterin BS55_RS0125435 synthase NadA: [+ 2 isozymes] 3-phospho- quinoxaline-2- a [protein]- UTP guanosine a uridine an oligopeptide 3-ketoacyl-ACP cysteine desulfurase] 2-dehydropantoate coproporphyrinogen menaquinol-9 2-oxoglutarate enoyl-CoA aryl-carrier protein methylthymine glucosyluronate-(1,2)-β- dihydro-8- mycolyl-trehalose Hyp a protein a (2E)-tetradec- cyclohydrolase II: 3'-triphosphate BS55_RS0117275 (R)-glycerate carboxyl adenylate L-cysteine GTP nucleoside triphosphate in 23S rRNA 40 in tRNA reductase: aspartate 1- oxidase: dehydrogenase hydratase: in DNA bis(tungstenpterin) D-glucosiduronate]-4'- oxoguanine mismatch 6-phosphate 23S rRNA RluA family 2-enoyl-[acp] BS55_RS0114225 2-dehydropantoate ferroheme i (3R)-3-hydroxy-2-oxo- bifunctional decarboxylase: BS55_RS0112000 thiamine complex BS55_RS0121695 cofactor β pyrophosphohydrolase: 4-hydroxyproline oligopeptidase B: tail-specific BS55_RS0101970 2,5-diamino-6- 2-reductase: 4 phosphooxybutanoate quinolinate O- -D-glucosiduronate alpha,alpha- (guanosine(2251) pseudouridine phosphate 2,3-bisphosphoglycerate- BS55_RS0100150 epimerase: BS55_RS28285 protease: myristoyl-[acyl- a (3R)-3- (5-phospho-D- BS55_RS0122670 heme A synthase: dihydrolipoyllysine- (S)-3- methylated-DNA-- -2'-O)- synthase: an S-sulfanyl-[cysteine BS55_RS0122095 protoporphyrinogen IX 3-phosphoserine/ carboxylating independent acyl carrier protein: A/G-specific adenine trehalose-phosphate carrier-protein] hydroxyoctadecanoyl- 7,8- thiamine- residue hydroxyoctanoyl-CoA [protein]-cysteine S- molybdenum cofactor nucleotide methyltransferase BS55_RS0109630 BS55_RS0111050 BS55_RS0106920 ribosylamino) β BS55_RS0125435 phosphohydroxythreonine phosphoglycerate BS55_RS0114640 glycosylase: synthase (UDP- reductase: [acp] desulfurase]-[disordered- dihydroneopterin (R)-pantoate -alanine nicotinate-nucleotide phosphate kinase: succinyltransferase: beta-glucuronidase: pyrophosphohydrolase: (4R)-4-hydroxy- pyrimidin- transaminase: 3-hydroxyacyl-CoA [+ 3 isozymes] methyltransferase: guanylyltransferase: BS55_RS0114960 forming)/trehalose- RlmB: [+ 4 isozymes] a peptide form scaffold 3'-phosphate diphosphorylase: mutase: BS55_RS0123870 BS55_RS0114875 38- a peptide BS55_RS0107705 bifunctional 4(3H)-one hydroxyferroheme i BS55_RS0117270 BS55_RS0113505 BS55_RS0118920 BS55_RS27925 BS55_RS0109770 a pseudouridine D-proline protein] complex BS55_RS0104200 BS55_RS0110980 BS55_RS0110970 dehydrogenase/ phosphatase: 2-O- UDP-3-O-[3- D-glyceraldehyde folate transformations III (E. coli) UMP 40 in tRNA [cysteine desulfurase]-S- bifunctional pantoate--beta- pyruvate thiamine enoyl-CoA BS55_RS0108130 2251 a myristoyl-[acp] hydroxymyristoyl] N- 3-phosphate 4-phosphooxy- a quinoxaline-2- an apurinic site trehalose- methylguanosine sulfanylcysteine:[acceptor diaminohydroxyphosphoribosylaminopyrimidine alanine ligase: protoporphyrin IX NaMN diphosphate 2-phospho- hydratase a [protein]-S- bis(guanylyl luteolin 7-O-β- acetylglucosamine L-threonine AMP carboxyl-[aryl- a thymine in DNA β-D-glucuronate adenine within DNA trans-keto- in 23S rRNA protein]-cysteine deaminase/5-amino-6-(5-phosphoribosylamino) D-erythro-7,8- BS55_RS0122675 a tetrahydrofolate D-glycerate family protein: methyl-L-cysteine tungstenpterin) cofactor D-diglucuronide beta-ketoacyl- deacetylase/3- chorismate 4-hydroxythreonine- 2-oxoisovalerate decarboxylation to isobutanoyl-CoA carrier protein] mono-mycolate sulfurtransferase: uracil reductase RibD: BS55_RS0101875 dihydroneopterin ferrochelatase: 1-deoxy-D-xylulose- nicotinate-nucleotide BS55_RS0121695 ACP synthase II: ferroheme a 4-phosphate hydroxyacyl-ACP BS55_RS0120320 5-amino-6-(5- BS55_RS0120975 5-phosphate adenylyltransferase: phosphopyruvate BS55_RS0108425 dihydroneopterin aminodeoxychorismate/ an [apo BCAA dehydratase: a [cysteine desulfurase]- phospho-D- (R)-pantothenate synthase: dehydrogenase BS55_RS0117185 hydratase: 3-oxooctanoyl-CoA aldolase: anthranilate synthase dehydrogenase an XLLG 6-O-cis-methoxy- 5-fluorouridine 5'- beta-ketoacyl- BS55_RS0115115 S-sulfanyl-[disordered- D-ribulose ribosylamino)uracil protoheme BS55_RS0117260 PdxA: bis(guanylyl molybdenum β an (R)-2- CTP long chain BS55_RS0113445 nicotinate adenine BS55_RS0102135 E2 protein] N 6 methanethiol O-acetyl-L- GDP- -L-fucose acetoacetate H O L-canavanine MeOH component II: type I pantothenate cofactor) biosynthesis alpha-ketoacid acetyl-CoA C- xylogulcan 2 mycolyl-trehalose monophosphate a protein ACP synthase II: form scaffold 5-phosphate bifunctional BS55_RS0122900 homoserine halocarboxylate ATP nucleoside triphosphate polyphosphate a (2E)-octadec- BS55_RS0114830 dinucleotide -lipoyl-L-lysine 6-phosphate noncanonical catalase/ BS55_RS0114635 protein] complex diaminohydroxyphosphoribosylaminopyrimidine 6-(hydroxymethyl) kinase: 1-deoxy-D- 3-amino-1- MoO - phosphoenol dehydrogenase acyltransferase: bifunctional polyphosphate 2-enoyl-[acp] bifunctional NAD+ synthase: 2 dihydrolipoyl pyrophosphohydrolase: pyrimidine cysteine deaminase/5-amino-6-(5-phosphoribosylamino) -7,8-dihydropterin 4-amino-4- BS55_RS0107750 xylulose 5- hydroxyacetone molybdopterin subunit alpha/beta: BS55_RS0121700 alpha-1,2- alpha,alpha- kinase 1: peroxidase HPI: metalloprotease: a 3-oxohexadecanoyl- 3,4-dihydroxy- NAD+ synthase: BS55_RS0122640 molybdopterin pyruvate dehydrogenase: acetoacetate- HAD family BS55_RS0100150 nucleotidase, steroyl-[acp] desulfurase: uracil reductase RibD: BS55_RS0101875 2-amino-4-hydroxy-6- deoxychorismate (R)-4'- phosphate 1-phosphate cofactor BS55_RS0118720 O-acetylhomoserine fucosyltransferase: trehalose-phosphate arginase: BS55_RS0117620 BS55_RS0102465 BS55_RS0104280 [acp] 2-butanone- dihydrofolate BS55_RS0122640 NAD(+) synthase: BS55_RS0125715 hexanoyl-CoA -CoA ligase: hydrolase: ATPase: nucleotide YjjG family: reductase: BS55_RS0102235 5-amino-6-(5- hydroxymethyldihydropteridine phosphopantothenate S-adenosyl- aminocarboxypropyltransferase/ BS55_RS0123110 synthase (UDP- BS55_RS0107905 [+ 2 isozymes] catalase: katE 4-phosphate reductase: BS55_RS0104430 pyruvate kinase: BS55_RS26405 BS55_RS0115385 BS55_RS0116225 pyrophosphohydrolase: BS55_RS0114270 3-oxoacyl-[acyl- BS55_RS0107705 [+ 4 isozymes] phospho-D- diphosphokinase: BS55_RS26805 L-methionine pyridoxine 5'- bis(molybdenum dihydrolipoyl cysteine synthase: forming)/trehalose- long chain formaldehyde an S-sulfanyl-[cysteine bifunctional superpathway of thiamine diphosphate biosynthesis I BS55_RS0114650 acyl-CoA [+ 8 isozymes] BS55_RS0114875 a peptide carrier-protein] synthase/GTP ribitylamino)uracil (7,8-dihydropterin- phosphate BS55_RS0111485 cofactor) dehydrogenase: BS55_RS0100925 [+ 3 isozymes] polyphosphate phosphopantothenoylcysteine biosynthesis NAD + dehydrogenase: an XLFG phosphatase: 5-fluorouridine reductase: a stearoyl-[acp] desulfurase]-S- cyclohydrolase II: 6-yl)methyl synthase: [+ 3 isozymes] glycine BS55_RS0125700an [apo BCAA CMP 4-aminobenzoate decarboxylase/ synthase: an [apo BCAA dehydrogenase BS55_RS0100865 xylogulcan acetoacetyl-CoA BS55_RS0108130 L-canaline urea sulfanyl-[disordered- BS55_RS0114225 dehydrogenase GDP diphosphate + trehalose- BS55_RS0104270 diphosphate met cys BS55_RS0121440 cleavage system BS55_RS27925 E2 protein] N 6 -S-[2- AMP an (S)-2- phosphate H phosphopantothenate--cysteine a 7,8-dihydrofolate a 5-methyltetrahydrofolate pyruvate 6 [+ 6 isozymes] acetate a halide anion ADP cis-methoxy- form scaffold 1-deoxy-L- methionine protein GcvH: E2 protein] N met 3-ketoacyl-ACP ligase CoaBC: BS55_RS0116235 serine methylpropanoyl]dihydrolipoyl- hydroxycarboxylate protein] complex glycero-tetrulose dihydropteroate adenosyltransferase: -dihydrolipoyl- mono-mycolate reductase: [cysteine desulfurase]-S- ARP (R)-4'- cysteine pyridoxine hydroxymethyltransferase:BS55_RS0117370 glyA bis(molybdenum L-lysine trans-hex-2-enoyl-CoA 4-phosphate synthase: L-lysine BS55_RS0101970 sulfanylcysteine:[acceptor BS55_RS0116420 desulfurase: 5'-phosphate cofactor) BS55_RS0115200 phosphopantothenoyl- SAM thymidylate a (3R)-3- stearate protein]-cysteine BS55_RS0102235 molybdenum cofactor hypothetical a [protein]- 6,7-dimethyl-8- L-cysteine pyridoxamine 5'- synthase: an N-terminal an L-phenylalanyl- a [protein]- a DNA methyl an (S)-2- a dipetide with an N- a DNA with a [release factor]- a [DNA]-3'- a 5'-phospho- (S)-1-pyrroline- hydroxyhexadecanoyl- sulfurtransferase: [+ 4 isozymes] guanylyltransferase: protein: dioscin [DNA] ethanol L-tyrosine bifunctional phosphate oxidase: bifunctional arginyl-[protein] Phe L-cysteine phosphotriester halocarboxylate hypoxanthine L-glutamine hydroxyl [DNA] 5-carboxylate long-chain fatty ribityllumazine 7,8- an [L-cysteine BS55_RS0124275 BS55_RS26340 [tRNA ] terminal L-aspartate [acp] a [cysteine BS55_RS0120320 phosphopantothenoylcysteine BS55_RS0112530 5,10-methylene- BS55_RS27925 2-oxo acid peptide chain L-glutamate gamma- DNA polymerase catalase/ phosphate acid--CoA ligase: synthase: dihydropteroate desulfurase]-S- protein-tyrosine- bifunctional desulfurase]-(S- decarboxylase/ tetrahydrofolate a (6S)-5- bis(guanylyl dehydrogenase enoyl-CoA release factor semialdehyde III subunit delta: peroxidase HPI: BS55_RS0100215 BS55_RS0115165 sulfanyl-L-cysteine a ThiS sulfur- methylated-DNA-- Bacterial alpha- HAD family dipeptidase: DNA-deoxyinosine ATP-dependent phosphatase: UDP-3-O-[3- sulfanyl) -[disordered- bifunctional phosphopantothenate--cysteine PLP dehydrogenase/ formyltetrahydrofolate molybdopterin) subunit E2: hydratase: leucyl/phenylalanyl- N(5)-glutamine dehydrogenase: BS55_RS0101315 BS55_RS0102465 [+ 2 isozymes] 2 cysteine glycosylase: DNA ligase: BS55_RS0115995 hydroxymyristoyl] N- folylpolyglutamate carrier protein cofactor BS55_RS0124535 BS55_RS0121695 tRNA--protein [protein]-cysteine S- L-rhamnosidase: hydrolase: BS55_RS0125855 methyltransferase: BS55_RS0119690 form scaffold 6,7-dimethyl-8-(1- ligase CoaBC: BS55_RS0116235 5,10-methylene- 5-formyltetrahydrofolate BS55_RS0101710 BS55_RS0111820 [+ 9 isozymes] catalase: katE acetylglucosamine synthase/ desulfurase: TCA cycle methyltransferase: BS55_RS28810 BS55_RS0115385 dipeptidase PepE: BS55_RS0101880 a nucleoside 5'- [+ 3 isozymes] stearoyl-CoA protein] complex D-ribityl)lumazine tetrahydrofolate cyclo-ligase: TCA cycle I (prokaryotic) (S)-3- transferase: glu acetaldehyde a [protein]- dihydrofolate 4'-phosphopantetheine BS55_RS0102235 BS55_RS0118920 [+ 4 isozymes] [+ 3 isozymes] a [release factor]-N 5 monophosphate deacetylase/3- cyclohydrolase: BS55_RS0115095 hydroxyhexanoyl-CoA BS55_RS0119560 BS55_RS0101695 L-tyrosine riboflavin synthase: synthase: [+ 4 isozymes] -methyl-L-glutamine hydroxyacyl-ACP BS55_RS0124845 3-hydroxyhexanoyl- an apurinic site BS55_RS0103975 BS55_RS0123310 pantetheine- a [ThiI sulfur- a carboxy- a 5,10- a 5,10- oxaloacetate [DNA] dehydratase: SAM CoA L-phenylalanyl-L- a [protein]-S- 3-O-β-D-glucosyl- an (S)-2- within DNA hypoxanthine a [cysteine desulfurase]- phosphate AIR carrier protein]-S- adenylated-[ThiS methylenetetrahydrofolate methenyltetrahydrofolate Phe [DNA] L-rhamnopyranose a halide anion a proteinogenic BS55_RS0115115 7,8-dihydrofolate arginyl-[protein] a tRNA methyl-L-cysteine diosgenin hydroxycarboxylate asp [scaffold protein- riboflavin adenylyltransferase: sulfanyl-L-cysteine sulfur-carrier protein] dehydrogenase: amino acid monoglutamate D-glyceraldehyde bifunctional a (2E)-hexadec- phosphatidylserine and (2Fe-2S)] complex BS55_RS0112580 BS55_RS0121695 phosphomethylpyrimidine tyr 3-phosphate 5,10-methylene- malate:quinone 2-enoyl-[acp] phosphatidylethanolamine bifunctional adenylate:persulfide 3'-dephospho- synthase ThiC: 1-deoxy-D-xylulose- tetrahydrofolate oxidoreductase: citrate synthase: 3-oxohexanoyl-CoA biosynthesis I riboflavin kinase/ transferase: thiamine diphosphate salvage II an N-terminal a [protein]-S- a uridine 34 an (S)-2- a guanine 527 palmitoyl-[acyl- thiamine phosphate formation from CoA BS55_RS0100740 2-iminoacetate 5-phosphate dehydrogenase/ BS55_RS0104265 BS55_RS0123195 an L-phenylalanyl- isovalerate a D-aminoacyl- a D-tryptophanyl- a holo [PedD acyl- an aryl sulfate histidinol FAD synthetase: BS55_RS0100765 sulfanyl-L-cysteine in tRNA Trp L-homoserine ethylphosphate carrier-protein] a CDP-diacylglycerol dephospho- malate dehydrogenase: acetyl-CoA C- L-lysyl-[protein] [tRNA Phe ] halocarboxylate [tRNA] [tRNA ] carrier protein] in 16S rRNA a [co-chaperone]- BS55_RS0101600 pyrithiamine and oxythiamine (yeast) a 7,8-dihydrofolate synthase ThiH: synthase: 5,10-methylene- 2-methylcitrate synthase: 16S rRNA sulfatase: reductase: 4-amino-2-methyl-5- BS55_RS0113560 acyltransferase: alkaline histidinol CDP-diacylglycerol--serine [scaffold protein- CoA kinase: BS55_RS0100760 BS55_RS0117260 tetrahydrofolate ACP S- homoserine O- BS55_RS0112410 HMP-P pyrimidinemethanol BS55_RS0100880 BS55_RS0121700 (guanine(527)-N(7) phosphatase: dehydrogenase: BS55_RS0107705 O-phosphatidyltransferase: FMN pyrithiamine dihydrofolate BS55_RS0101415 a thiocarboxy- 1-deoxy-D-xylulose cyclohydrolase: tRNA 2- HAD family malonyltransferase: succinyltransferase: (2Fe-2S)] complex 2-iminoacetate leucyl/phenylalanyl- acetate--CoA ligase: D-tyrosyl-tRNA(Tyr) D-tyrosyl-tRNA(Tyr) )-methyltransferase sulfatase: BS55_RS0101785 BS55_RS0105765 [ThiS-Protein] bifunctional BS55_RS0124845 thiouridine(34) BS55_RS0107875 SSQ1 chaperone: reductase: bifunctional 5-phosphate butanoyl-CoA tRNA--protein BS55_RS0122875 hydrolase: BS55_RS0116375 RsmG: BS55_RS0108265 BS55_RS0124620 a palmitoyl-[acp] a 3-sn-phosphatidyl-L-serine bifunctional coenzyme A (S)-malate citrate deacylase: deacylase: a malonyl- [+ 3 isozymes] II: BS55_RS0111485 hydroxymethylpyrimidine an N 10 - synthase MnmA: BS55_RS0115385 BS55_RS0121640 hydroxymethylpyrimidine transferase: BS55_RS0114870 BS55_RS0114870 7 BS55_RS0125545 O-succinyl-L- a phenol his riboflavin kinase/ kinase/ acyl-CoA BS55_RS0110810 [PedD acyl- an N - ethanol a [chaperone-ATP]- BS55_RS0102340 [+ 3 isozymes] kinase/ thiazole synthase: formyltetrahydrofolate BS55_RS0119560 [+ 3 isozymes] homoserine phosphatidylserine FAD synthetase: dehydrogenase: carrier protein] methylguanine 527 4-amino-2-methyl-5- phosphomethylpyrimidine BS55_RS0100755 phosphomethylpyrimidine decarboxylase family [co-chaperone]- BS55_RS0101600 a tetrahydrofolate isovaleryl-CoA diphosphate in 16S rRNA kinase: BS55_RS0102335 BS55_RS0100865 34 pyrimidinemethanol kinase: BS55_RS0102335 a [protein]- a 2-thiouridine AMP an uncharged Trp protein: BS55_RS0116300 [scaffold protein- 2-[(2R,5Z)-2-carboxy- L-phenylalanyl- a (2R)-2- a D-amino acid D-tryptophan a tRNA [+ 6 isozymes] a tRNA Phe a halide anion tRNA (2Fe-2S)] complex FAD bifunctional thiamine diphosphate salvage IV (yeast) 4-methylthiazol-5(2H)- HMP-P L-lysyl-[protein] L-cysteine in tRNA hydroxy fatty acid palmitate an L-1-phosphatidylethanolamine HMP-PP aconitate hydratase hydroxymethylpyrimidine ylidene]ethyl phosphate 5-(2-hydroxyethyl) superpathway of heme b biosynthesis from uroporphyrinogen-III AcnA: BS55_RS0108255 crotonyl-CoA long-chain fatty SSQ1 chaperone bifunctional kinase/ thiamine -4-methylthiazole [+ 3 isozymes] ATPase: oxythiamine hydroxymethylpyrimidine class II fumarate hydratase: acid--CoA ligase: phosphomethylpyrimidine thiamine phosphate enoyl-CoA a mature peptidoglycan D-glyceraldehyde D-sedoheptulose 6-O-cis-keto- 966 a plant hydroxyethylthiazole uroporphyrinogen-III BS55_RS0121865 (n) a β-D-mannoside an (R)-2- N-acetyl-9-O- a holo [PedN acyl- a guanine long chain BS55_RS0100215 BS55_RS0121640 kinase: BS55_RS0102335 kinase/ hydratase: (meso-DAP containing) mycolyl-trehalose arabinogalactan a dipeptide acetaldehyde thiaminase II: thiaminase II: synthase: kinase: 3-phosphate 7-phosphate halocarboxylate acetylneuraminate carrier protein] in 16S rRNA polyphosphate [+ 2 isozymes] lipoate salvage II phosphomethylpyrimidine BS55_RS0121695 6-phosphate 16S rRNA type I aldehyde BS55_RS0102340 bacillithiol biosynthesis BS55_RS0100745 NAD salvage pathway I (PNC VI cycle) BS55_RS0102325 uroporphyrinogen fumarate cis-aconitate bifunctional arabinogalactan membrane a [chaperone- HMP-P BS55_RS0102340 kinase: BS55_RS0102335 ACP S- (guanine(966)-N(2) dehydrogenase polyphosphate an [2Fe-2S] a [lipoyl-carrier [+ 2 isozymes] 4-methyl-5-(2- decarboxylase: (S)-3- lytic transglycosylase beta-mannosidase: endo-1,4-beta- dipeptidase: palmitoyl-CoA ADP]-[disordered- 5-(2-hydroxyethyl) transketolase: HAD family sialate O- alpha,alpha- malonyltransferase: kinase 2: 6 aconitate hydratase hydroxybutanoyl-CoA )-methyltransferase (NADP(+)): cluster protein protein]-N - + phosphooxyethyl) BS55_RS0114250 fumarate reductase/ domain-containing galactosidase: BS55_RS0107255 form scaffold bifunctional 4-amino-2-methyl-5- 5-(2-hydroxyethyl) (S)-malate UDP-N-acetyl- NAD HMP-PP BS55_RS0114035 BS55_RS0112880 hydrolase: acetylesterase: trehalose-phosphate BS55_RS0116375 BS55_RS26325 -4-methylthiazole thiazole succinate dehydrogenase AcnA: BS55_RS0108255 RsmD: BS55_RS0111045 protein] complex lipoyl-L-lysine hydroxymethylpyrimidine pyrimidinemethanol -4-methylthiazole α-D-glucosamine (S)-3- protein: BS55_RS27815 beta-mannosidase: synthase (UDP- a malonyl[PedN BS55_RS0103075 a proteinogenic hydroxyethylthiazole thiamine phosphate coproporphyrinogen III transketolase: BS55_RS0115385 BS55_RS0120110 BS55_RS0112575 long chain flavoprotein: [+ 3 isozymes] hydroxybutanoyl- acyl-carrier 2 acetate non-chaperonin kinase/ bifunctional hydroxyethylthiazole endolytic transglycosylase BS55_RS0114040 BS55_RS0109170 [+ 3 isozymes] [+ 2 isozymes] forming)/trehalose- an N - a galactotetraose amino acid polyphosphate kinase: thiamine phosphate BS55_RS0119720 966 molecular (R)-lipoate phosphomethylpyrimidine N-acetyl-alpha- NAD+ synthase: CoA MltG: BS55_RS0124300 phosphatase: protein] methylguanine BS55_RS0102325 hydroxymethylpyrimidine kinase: thiamine- kinase: BS55_RS0102335 D-glucosaminyl NAD+ synthase: synthase: oxygen-dependent oxygen-independent sdhA BS55_RS0119730 dehydrogeanse: BS55_RS0108130 in 16S rRNA chaperone ATPase: 4-methyl-5-(2- kinase/ BS55_RS0102325 phosphate kinase: BS55_RS0122640 β-D- lipoate-- BS55_RS0100745 succinate dehydrogenase BS55_RS0121695 D-ribose 5- D-xylulose a non glycosylated a (2R)-2- trehalose-cis-keto- BS55_RS0121640 phosphomethylpyrimidine 4-methyl-5-(2- L-malate BS55_RS0117270 BS55_RS0122640 coproporphyrinogen coproporphyrinogen β a mature peptidoglycan GlcNAc-1,6-anhMurNAc- mannopyranose a halide anion acetate N-acetylneuraminate phosphooxyethyl) fatty acid -oxidation I (generic) (n) phosphate 5-phosphate sugar acceptor an [Fe-S cluster protein ligase: HMP-PP synthase BshA: [+ 2 isozymes] oxidase: III oxidase: cytochrome b subunit: hydroxy fatty acid mono-mycolate thiazole kinase: BS55_RS0102335 phosphooxyethyl) NAD(+) synthase: acetoacetyl-CoA (meso-DAP containing) L-Ala-γ-D-Glu-DAP-D-Ala biosynthesis BS55_RS0105385 BS55_RS0119170 thiazole BS55_RS0126010 thiamine diphosphate BS55_RS0104430 BS55_RS0112000 BS55_RS0110100 a (3Z)-alk-3- chaperone]-ATP nicotinate adenine NMN thiamine phosphate NAD biosynthesis from 2-amino- HMP-P thiamine phosphate thiamine succinate D-threo-isocitrate acetyl-CoA C- enoyl-CoA (lipoyl)adenylate dinucleotide a 3-O-acetylated an N 3 -methyladenine 46 3-carboxymuconate semialdehyde (S)-malyl N-acetyl- phosphate NADP-dependent a [DNA]-3'- + a 5'-phospho- N-acetyl-4-O- long chain a guanine sn-glycerol pyridoxamine L-malic a [protein]- synthase: synthase: protoporphyrinogen IX protoporphyrinogen IX acyltransferase: NAD rutin bifunctional α isocitrate dehydrogenase: ∆ 3 ∆ 2 hydroxyl [DNA] DL-allothreonine rhamnogalacturonan I in DNA acetylneuraminate in tRNA semialdehyde lipoate-- BS55_RS0100745 2-amino-3- BS55_RS0100745 -D-glucosaminide thiamine- succinate--CoA BS55_RS0121700 -cis- -trans-enoyl- polyphosphate 3-phosphate 5'-phosphate L-histidine hydroxymethylpyrimidine nicotinate-nucleotide BS55_RS0111910 exopolyphosphatase: tRNA L-glyceraldehyde aldehyde histidine kinase: protein ligase: [+ 2 isozymes] carboxymuconate- [+ 2 isozymes] bacillithiol phosphate kinase: ligase subunit alpha: CoA isomerase: pyridoxamine 5'- kinase/ adenylyltransferase: BS55_RS0105660 (guanosine(46)-N7) 3-phosphate dehydrogenase di-trans,poly-cis BS55_RS0105385 6-semialdehyde biosynthesis BS55_RS0117270 BS55_RS0120570 NADP-dependent acetyl-CoA BS55_RS0121695 DNA ligase D: rhamnogalacturonan DNA-3- sialate O- Bacterial alpha- phosphate oxidase: BS55_RS29490 phosphomethylpyrimidine thiamine BS55_RS0117185 acetylesterase: exopolyphosphatase: -methyltransferase reductase: (NADP(+)): [+ 4 isozymes] -undecaprenyl a [glycine- deacetylase BshB1: ADP-forming succinate- isocitrate dehydrogenase: BS55_RS0102715 serine methyladenine acetylesterase: L-rhamnosidase: BS55_RS0112530 thiamine kinase: BS55_RS0102335 phosphate thiamine NADH repair a (2E)-2- BS55_RS0123345 TrmB: BS55_RS0111880 BS55_RS0111045 a [protein]- phosphate biosynthesis cleavage complex BS55_RS0112735 BS55_RS0104210 hydroxymethyltransferase: glyA BS55_RS0116750 glycosylase I: BS55_RS0120110 BS55_RS28810 phosphate quinolinate diphosphate menaquinol-7 biosynthesis -CoA ligase subunit enoyl-CoA enoyl-CoA [+ 3 isozymes] long chain BS55_RS0120870 L-glyceraldehyde PLP N-phospho- H protein] N 6 - protoporphyrin IX [+ 3 isozymes] an N 7 - (S)-malate (2E,6E)-farnesyl HMP-PP (S)-malyl α-D- NaMN nicotinamide beta: BS55_RS0125675 BS55_RS0121545 [+ 2 isozymes] [+ 4 isozymes] polyphosphate 3-phosphate L-histidine IPP NADH hydratase: 3-hydroxybutyryl- a 2,3,4- 46 diphosphate lipoyl-L-lysine carboxylating glucosaminide all-trans- a 2,3,4-saturated acyl-CoA methylguanine menaquinol-11 biosynthesis folate polyglutamylation ferrochelatase: long-chain fatty BS55_RS0121695 CoA epimerase: saturated (3R)-3- nicotinate-nucleotide heptaprenyl 1,4-dihydroxy- fatty acid dehydrogenase: [DNA] NMN acetaldehyde a rhamnogalacturonan β-L- in tRNA bacillithiol BS55_RS0120975 acid--CoA ligase: BS55_RS26340 hydroxyacyl-CoA AMP gly an apurinic site quercetin- diphosphorylase: thiamine diphosphate 2-naphthoate succinyl-CoA 2-oxoglutarate BS55_RS0101930 acetate type I 3-methyladenine acetate N-acetylneuraminate isoprenyl biosynthesis all-trans- BS55_RS0109775 within DNA rhamnopyranose 3-glucoside a [lipoyl-carrier menaquinol-10 biosynthesis BS55_RS0110980 a tetrahydrofolate transferase: cysteine-adding undecaprenyl 1,4-dihydroxy- protoheme [+ 2 isozymes] [+ 6 isozymes] a 2,3,4- 6 nicotinate a 2,3,4-saturated BS55_RS0105600 protein]-N - all-trans- tetrahydrofolate salvage from enzyme BshC: diphosphate 2-naphthoate saturated (3S)-3- NaMN phosphoribosyltransferase: (R)-NADHX fatty acyl CoA lipoyl-L-lysine 1,4-dihydroxy- 5,10-methenyltetrahydrofolate hydroxyacyl-CoA UDP-N-acetyl- decaprenyl-diphospho-N- (9Z,15Z)-12,13- 37 decaprenyl BS55_RS0117025 BS55_RS0109605 bifunctional serine a 2-O-acetylated D-xylulose D-erythrose a guanine (2R,3S)-3- di-trans,octa-cis bifunctional 3-hydroxyacyl-CoA α 2-methylbutanoate 2-oxoadipate leukotriene-D4 DNA with lesion benzaldehyde a nucleoside diphosphate 2-naphthoate nicotinate-nucleotide thiamine folylpolyglutamate hydroxymethyltransferase: glyA -D-glucosamine acetylmuramoyl-pentapeptide rhamnogalacturonan I 5-phosphate 4-phosphate epoxy-octadeca- in tRNA isopropylmalate -undecaprenyl a 5,10-methenyltetrahydrofolate bacillithiol nicotinate demethylmenaquinol-7 ADP-dependent dehydrogenase: triphosphate adenylyltransferase: diphosphate synthase/ 10 9,15-dienoate tRNA excinuclease 3-isopropylmalate aldehyde diphosphate an N - 2-oxoglutarate NAD(P)H-hydrate coenzyme A BS55_RS0117185 bifunctional 5,10- dihydrofolate a 5,10- BS55_RS0121695 undecaprenyldiphospho- epoxide hydrolase: (guanosine(37)-N1) ABC subunit UvrA: dehydratase: dehydrogenase NTPase: undecaprenyl- DMKH2-11 formyltetrahydrofolate bifunctional dehydrogenase dehydratase/ rhamnogalacturonan transketolase: 2-oxoglutarate membrane nicotinate adenine methylene-tetrahydrofolate synthase: methylenetetrahydrofolate muramoylpentapeptide beta-N- acetate--CoA ligase: BS55_RS0103515 -methyltransferase BS55_RS0112480 BS55_RS0122080 (NADP(+)): BS55_RS27240 diphosphate glutathione thioredoxin pathway bifunctional demethylmenaquinone E1 component: NAD(P)H-hydrate a 2,3,4-saturated acetyl-CoA C- a 2,3,4-saturated acetylesterase: BS55_RS0114035 dehydrogenase dipeptidase: dehydrogenase/5,10- acetylglucosaminyltransferase: BS55_RS0122875 TrmD: [+ 4 isozymes] BS55_RS0122090 BS55_RS0111045 phosphatase: biosynthesis dinucleotide bifunctional BS55_RS0123310 bifunctional methyltransferase/2- BS55_RS0113500 epimerase: fatty acyl CoA acyltransferase: 3-oxoacyl-CoA BS55_RS0116750 BS55_RS0107255 (9Z,15Z)-12,13- DMKH2-10 methylene-tetrahydrofolate folylpolyglutamate transketolase: E1 component: BS55_RS0114805 DNA without (2S)-2- a nucleoside demethylmenaquinone BS55_RS0124400 dihydroxyoctadeca- 1 benzoate BS55_RS0101590 NAD+ synthase: lipoate biosynthesis lipoate biosynthesis folylpolyglutamate synthase/ methoxy-6-polyprenyl-1,4- BS55_RS0101515 BS55_RS0121700 Polymeric Compound Degradation [+ 3 isozymes] BS55_RS0113500 an N - diphosphate cyclohydrolase: lipoate salvage I an oxidized (S)-NADHX BS55_RS0114040 lesion isopropylmalate di-trans,octa-cis bifunctional BS55_RS0122640 and incorporation I methyltransferase/2- and incorporation II synthase/ benzoquinol methylase 9,15-dienoate methylguanine 37 cys glu BS55_RS0124845 thioredoxin a tetrahydrofolate dihydrofolate 2-methylbutanoyl- -undecaprenyl demethylmenaquinone methoxy-6-polyprenyl-1,4- dihydrofolate UbiE: BS55_RS0101660 decaprenyl-pyrophosphoryl- UDP diphosphate leukotriene-E4 in tRNA an N 10 -formyltetrahydrofolate synthase: ATP-dependent heparin degradation CoA AMP a rhamnogalacturonan gly + benzoquinol methylase octanoate (1,4)-β-D-xylan acetate D-glyceraldehyde phosphate methyltransferase/2- NAD an octanoyl-[acp] (R)-lipoate synthase: BS55_RS0123310 NADH-hydrate pectin degradation II (N-acetylglucosamine)-N- type I F6P CO glutaryl-CoA NADH lipoate-- UbiE: BS55_RS0101660 lipoate-- BS55_RS0123310 menaquinol-7 degradation acetylmuramyl-(pentapeptide) 3-phosphate 2 methoxy-6-polyprenyl-1,4- phosphoribosylglycinamide lipoyl(octanoyl) 10 acetyl-CoA thioredoxin- an N - dehydratase: heparin a methyl-esterified benzoquinol methylase formyltransferase: transferase LipB: protein ligase: protein ligase: a 5,10- menaquinol-11 disulfide reductase: formyltetrahydrofolate BS55_RS0101515 heparinase: a (1->4)-β-D-xylan UbiE: BS55_RS0101660 a [lipoyl-carrier BS55_RS0105385 BS55_RS0105385 base-degraded homogalacturonan γ-L-glutamyl- BS55_RS0107845 BS55_RS0121195 a [lipoyl-carrier protein] methylenetetrahydrofolate pectinesterase: 10 RNase III mRNA p-nitrophenyl-α-L- (12Z,15Z)-9,10- 37 6 BS55_RS0112020 guanylyl molybdenum thiamine salvage BS55_RS0125280 endo-1,4-beta- an L-methionyl- an N - lysine within guanine a [protein]-L- protein] N - (lipoyl)adenylate 6 ribulose acetyl-CoA NADH 4-deoxy-2-O-sulfo- isobutanoate futalosine (R)-lipoate epoxyoctadeca- Phe an aldehyde L-cysteine N -octanoyl-L-lysine BS55_RS0116805 xylanase: Met formyltetrahydrofolate processing rhamnopyranoside gcv protein H in tRNA proline (ω = 180) menaquinol-10 menaquinol-6 biosynthesis a tetrahydrofolate octanoyl-L-lysine cofactor biosynthesis β [initiator tRNA ] glutathione lipoate-- menaquinol-8 biosynthesis formylaminopyrimidine -L-erythro-hex-4- a homogalacturonan BS55_RS0103165 12,15-dienoate tRNA peptidylprolyl ribulokinase: aldehyde acetyl-CoA lipoyl synthase: lipoyl synthase: MoO - enopyranuronosyl-(1,4)-D-N a (1->4)-β-D-xylan BS55_RS0110770 2 epoxide hydrolase: (guanosine(37)-N1) isomerase: dehydrogenase carboxylase: synthetase: protein ligase: a reduced BS55_RS0124910 molybdopterin oligosaccharide Bacterial alpha- lipoate-- demethylmenaquinol-6 BS55_RS0124910 -sulfoglucosamine 6-O-sulfate methionyl-tRNA acetate--CoA ligase: futalosine hydrolase: BS55_RS0103515 -methyltransferase BS55_RS0111885 ribulokinase: (NADP(+)): BS55_RS0102740 BS55_RS0105390 BS55_RS0105385 thioredoxin a [lipoyl-carrier cofactor molybdenum cofactor demethylmenaquinol-8 aminomethylpyrimidine ribonuclease III: L-rhamnosidase: protein ligase: bifunctional a [lipoyl-carrier 1,4-β-xylosidase: BS55_RS0122875 BS55_RS0117385 TrmD: [+ 8 isozymes] BS55_RS0122150 BS55_RS0111045 [+ 5 isozymes] a [lipoyl-carrier protein]-N 6 -[(R)- bifunctional formyltransferase: BS55_RS28810 (12Z,15Z)-9,10- glutathione demethylmenaquinone 6 6 guanylyltransferase: BS55_RS0103160 BS55_RS0114630 BS55_RS0105385 a [protein]-L- L(or D)-ribulose protein]-N -[(R) protein]-N - thiaminase II: BS55_RS0104225 dihydroxyoctadeca- 1 BS55_RS0114805 a carboxylate malonyl-CoA dihydrolipoyl]-L-lysine guanylyl BS55_RS27925 demethylmenaquinone D-galactopyranuronate [+ 4 isozymes] an N - ω methyltransferase/2- -dihydrolipoyl]- BS55_RS0102340 β proline ( = 0) 5-phosphate lipoyl-L-lysine molybdenum methyltransferase/2- 4-deoxy- -L-erythro-hex-4- β-D-xylopyranose 12,15-dienoate methylguanine 37 methoxy-6-polyprenyl-1,4- L-lysine RNase III dehypoxanthine a [glycine-cleavage cofactor methoxy-6-polyprenyl-1,4- 4-amino-2-methyl-5- enopyranuronosyl-(1,4)-D-N an N-formyl- isobutanoyl-CoA diphosphate β in tRNA Phe benzoquinol methylase AMP an mRNA fragment processing futalosine hypoxanthine -L- complex H protein] benzoquinol methylase pyrimidinemethanol -sulfoglucosamine 6-O-sulfate L-methionyl- a tetrahydrofolate 4-nitrophenol UbiE: BS55_RS0101660 product mRNA rhamnopyranose N 6 -lipoyl-L-lysine aldehydo-D- [initiator tRNA met ] menaquinol-6 UbiE: BS55_RS0101660 menaquinol-8 galacturonate glucuronate a [glycine-cleavage (9Z,12Z)-15,16- 55 D-gluconate N,6-O-disulfo-D-glucosamine + a 2-oxo a uridine isomerase: complex H protein] NAD H O γ-L-glutamyl-(S)- naringin epoxyoctadeca- a cytosine in DNA a sulfurated [sulfur carrier] SAM glu 2 carboxylate L-ornithine a tRNA precursor gly in tRNA an L-amino acid 6-phosphate ser BS55_RS0116775 6 N -octanoyl-L-lysine 2-aminobutanoate 9,12-dienoate DNA methylase: tRNA NADP-dependent Secondary Metabolite Degradation BS55_RS0118915 amino acid phosphogluconate L-serine D-tagaturonate Bacterial alpha- epoxide hydrolase: pseudouridine(55) ornithine--oxo-acid dehydrogenase: dehydrogenase: ammonia-lyase: amino acid glutathione L-rhamnosidase: BS55_RS0103515 DNA (cytosine-5-)- synthase TruB: lipoyl synthase: transaminase: ribonuclease Z: BS55_RS0105410 BS55_RS0114795 BS55_RS0121110 peptidoglycan biosynthesis I (meso-diaminopimelate containing) Cell Structure Biosynthesis anhydromuropeptides recycling I N-sulfo-D-glucosamine dehydrogenase: synthetase: (9Z,12Z)-15,16- methyltransferase: BS55_RS0101595 lipid IV biosynthesis (P. putida) peptidoglycan maturation (meso-diaminopimelate containing) D-galacturonate degradation I BS55_RS0124910 BS55_RS0125140 BS55_RS28810 a pseudouridine 55 a 2-oxo D-ribulose A lipid IV biosynthesis (E. coli) BS55_RS0107900 BS55_RS0103680 pyruvate A BS55_RS0105410 BS55_RS0105390 [+ 4 isozymes] dihydroxyoctadeca- carboxylate 5-phosphate UDP-N-acetyl-α-D-glucosamine GlcNAc-1,6- a 5-methylcytosine in tRNA a (3R)-3- a (3R)-3- lipid II (meso aldehydo-D- D-fructuronate 9,12-dienoate anhMurNAc- a [glycine-cleavage in DNA UDP-N-acetylglucosamine hydroxydecanoyl- UDP-N-acetyl- hydroxytetradecanoyl- diaminopimelate containing) galacturonate a proteinogenic L-glutamate-5- a single-stranded β UDP-N-acetyl- L-Ala-γ-D-Glu- 5'-deoxyadenosine an unsulfurated + -L- met complex H protein] 2-oxoglutarate ammonium NADH H amino acid semialdehyde mature tRNA ophthalmate prunin 1-carboxyvinyltransferase: [acp] α-D-glucosamine [acp] α-D-glucosamine monofunctional glucuronate D-glucosamine [sulfur carrier] oligoribonucleotide rhamnopyranose DAP-D-Ala N 6 -lipoyl-L-lysine BS55_RS0118845 biosynthetic isomerase: acyl-ACP--UDP-N- UDP-N-acetyl-α-D-glucosamine-enolpyruvate acyl-ACP--UDP-N- peptidoglycan BS55_RS0116775 acetylglucosamine acetylglucosamine transglycosylase: all-trans- α-L- a [2-oxoglutarate-dehydrogenase lysine within a single- D-arabinofuranose L-gulono- UDP-N-acetylmuramate O-acyltransferase: O-acyltransferase: BS55_RS0125475 β γ D-tagaturonate an octanoyl-[acp] octaprenyl hesperidin a tripeptide a holo [BryP acyl- propanoyl-CoA lys N-acetyl- -D- L-alanyl- -D- a sulfurated [sulfur carrier] SAM 6 gcv protein H 4-hydroxybenzoate stranded RNA 5-phosphate rhamnopyranose 1,4-lactone dehydrogenase: BS55_RS0115110 E2 protein] N -octanoyl-L-lysine carrier protein] L-rhamnose BS55_RS0115110 a nascent peptidoglycan glucosamine-1,6- glutamyl-meso-2,6- tagaturonate diphosphate 3-deoxy-8- acyl-CoA SMP-30/ BS55_RS0105690 γ ACP S- mutarotase: L-lysine 6- ala with (L-alanyl- -D-glutamyl- anhydro-N-acetyl- diaminopimeloyl- reductase: Bacterial alpha- phosphooctulonate carboxylase gluconolactonase/ UDP-3-O-[(3R)-3- UDP-3-O-[(3R)-3- polyribonucleotide malonyltransferase: BS55_RS0110715 transaminase: glu UDP-N-acetyl-α-D-muramate meso-2,6-diaminopimeloyl-D- β-D-muramate D-alanine BS55_RS0116785 lipoyl(octanoyl) 4-hydroxybenzoate peptidase T: synthase: subunit beta: LRE family protein: hydroxydecanoyl]- hydroxymyristoyl]-N- lipoyl synthase: L-rhamnosidase: nucleotidyltransferase: BS55_RS0116375 BS55_RS0119510 alanyl-D-alanine) pentapeptide LD- Carboxylate Degradation transferase LipB: octaprenyltransferase: BS55_RS0121735 BS55_RS0100285 BS55_RS0101935 [+ 2 isozymes] BS55_RS0108695 N-acetyl-α-D- acetyl-α-D-glucosamine BS55_RS28810 BS55_RS0125365 a malonyl- (S)-methylmalonyl- β-L- glutamate racemase: UDP-N-acetylmuramate- carboxypeptidase: D-altronate BS55_RS0124910 BS55_RS0121195 L-gulonate allysine glucosamine BS55_RS0104095 [+ 4 isozymes] KDO-8P [BryP acyl- bifunctional penicillin-binding penicillin-binding CoA rhamnopyranose BS55_RS0101620 -L-alanine ligase: BS55_RS0109840 altronate 2-methylcitrate cycle I carrier protein] bifunctional UDP-3-O-[3- protein 2: protein 2: 1,6-anhydro-N- pyruvate decarboxylation to acetyl CoA a [glycine-cleavage a single- BS55_RS0124395 LD- dehydratase: a [2-oxoglutarate dehydrogenase a nucleoside a proteinogenic a dipeptide UDP-3-O-[3- hydroxymyristoyl] N- BS55_RS0118780 BS55_RS0118780 a mature peptidoglycan with acetyl-β-muramate 5'-deoxyadenosine acyl-carrier protein complex H protein] 3-octaprenyl-4- hesperitin-7-O- β-L- D-glt carboxypeptidase: met 6 an unsulfurated [sulfur carrier] diphosphate stranded RNA amino acid hydroxymyristoyl] N- acetylglucosamine γ BS55_RS0116780 propanoate a [pyruvate E2 protein] N -lipoyl-L-lysine N 6 -octanoyl-L-lysine hydroxybenzoate β-D-glucoside rhamnopyranose UDP-N-acetyl-α-D-muramoyl-L-alanine D-alanyl-D-alanine D-alanyl-D-alanine (L-alanyl- -D-glutamyl-meso- anhydro-N- BS55_RS0106940 acetylglucosamine deacetylase/3- altronate dehydrogenase carboxypeptidase/ carboxypeptidase/ 2,6-diaminopimeloyl-D-alanyl- acetylmuramic L-alanyl-γ-D- deacetylase/3- hydroxyacyl-ACP dehydratase: long-chain fatty E2 protein] N 6 pyruvate UDP-N-acetylmuramoyl- D-alanyl-D-alanine- D-alanyl-D-alanine- D-alanine) pentapeptide acid kinase: glutamyl-meso- hydroxyacyl-ACP dehydratase: BS55_RS0110720 acid--CoA ligase: -lipoyl-L-lysine dehydrogenase a [pyruvate dehydrogenase E2 3-[(1-carboxyvinyl) a 2,3,4-saturated a DNA containing adenine 1518 / a [LuxE]-S- an insertion sequence β-D-glucose (2R,3S)-3- a (1->4)- a glucosylated L-alanine--D-glutamate endopeptidase: endopeptidase: BS55_RS0117365 diaminopimelate a holo [BryU acyl- α dehydratase: BS55_RS0115115 BS55_RS0100215 complex E1 a sulfurated [sulfur carrier] SAM 6 SAM 1,2-diacyl-sn- an apurinic/ 1519 (long-chain fatty 6-phosphate -D-glucan glycogenin ligase: BS55_RS0124410 N-acetyl-D- 2-dehydro-3- protein] N -octanoyl-L-lysine oxy]benzoate adenine in 16S rRNA element IS30 carrier protein] isopropylmalate BS55_RS0125200 BS55_RS0125200 pyruvate component glycerol 3-phosphate CTP apyrimidinic site 16S rRNA acyl)-L-cysteine 1,4-alpha-glucan 1,4-alpha-glucan BS55_RS0115115 UDP-3-O-(3- muramate 6- deoxy-D-gluconate [+ 2 isozymes] transposase: inositol-3-phosphate 3-isopropylmalate dehydrogenase: pyruvate subunit beta: ACP S- branching branching meso-diaminopimelate UDP-N-acetyl-α-D-muramoyl- UDP-3-O-(3- hydroxymyristoyl) phosphate (adenine(1518)-N(6)/ BS55_RS0103430 synthase: dehydrogenase: a nascent peptidoglycan a nascent peptidoglycan propanoyl-CoA BS55_RS0114615 dehydrogenase: malonyltransferase: protein GlgB: protein GlgB: hydroxydecanoyl) -α-D-glucosamine N-acetylmuramic BS55_RS0117380 aminofutalosine phosphatidate adenine(1519)-N(6))- BS55_RS0104380 BS55_RS0122070 L-alanyl-D-glutamate with (L-alanyl-γ-D-glutamyl- with D,D cross-links (meso- BS55_RS0114615 lipoyl synthase: endonuclease III: acyl-CoA reductase: [+ 9 isozymes] BS55_RS0116375 BS55_RS26670 BS55_RS26670 -α-D-glucosamine UDP-3-O-(3- [+ 3 isozymes] [+ 2 isozymes] synthase MqnE: cytidylyltransferase: dimethyltransferase an insertion meso-2,6-diaminopimeloyl- diaminopimelate containing) acid 6-phosphate 2-methylcitrate BS55_RS0124910 BS55_RS0119670 BS55_RS0100450 a malonyl- 4-methyl-2- D-ala UDP-N-acetylmuramoyl- UDP-3-O-(3- hydroxymyristoyl) superpathway of β-D- pyruvate BS55_RS0102265 BS55_RS0117355 RsmA: sequence IS30 with Ins(3)P a GlgE-glycogen a glycogen D-alanine) tetrapeptide etherase: synthase: a [pyruvate a [pyruvate [BryU acyl- oxopentanoate L-alanyl-D-glutamate-- hydroxymyristoyl) glucosamine N- glucuronosides degradation KDGP dehydrogenase BS55_RS0122895 integrated transposon BS55_RS0121340 BS55_RS0100880 dehydrogenase dehydrogenase N 6 -dimethyladenine 1518 carrier protein] glucosamine N- complex E1 6-amino-6- D-alanine--D-alanine 2, 6-diaminopimelate acyltransferase: L,D-transpeptidase: LD-carboxypeptidase: L,D-transpeptidase: N-acetyl-D- 6 6 a [pyruvate dehydrogenase a 3'-terminal a 5'-phospho- 6 1519 a [LuxE]- a long-chain a mature peptidoglycan β (2S,3S)-2- E2 protein] N E2 protein] N -S- 5'-deoxyadenosine met a CDP-2,3,4-saturated- /N -dimethyladenine ligase: BS55_RS0124420 acyltransferase: BS55_RS0115120 glucosamine a -D-glucuronoside component met 6 an unsulfurated [sulfur carrier] deoxyfutalosine ligase: BS55_RS0124290 BS55_RS0107650 BS55_RS0109840 BS55_RS0107650 methylcitrate -dihydrolipoyl- acetyldihydrolipoyl- E2 protein] N -lipoyl-L-lysine diacylglycerol unsaturated sugar [DNA] in 16S rRNA L-cysteine fatty aldehyde BS55_RS0115120 UDP-2-N,3-O-bis[(3R)- with D,D cross-links (meso- 6-phosphate subunit beta: L,D-transpeptidase: LD-carboxypeptidase: L,D-transpeptidase: a mature peptidoglycan L-lysine L-lysine D-alanyl-D-alanine UDP-N-acetyl-α-D-muramoyl-L-alanyl- UDP-2-N-[(3R)-3- 3-hydroxytetradecanoyl]- diaminopimelate containing) N-acetylglucosamine- beta-glucuronidase: bifunctional 2- BS55_RS0117380 BS55_RS0123915 BS55_RS0106940 BS55_RS0123915 with (L-alanyl-γ-D-glutamyl- γ-D-glutamyl-meso-2,6-diaminopimelate hydroxydodecanoyl]- α-D-glucosamine 6-phosphate BS55_RS0123870 D-glyceraldehyde methylcitrate meso-2,6-diaminopimeloyl- pyruvate α undecaprenyl-diphospho-N 3-O-[(3R)-3- 3-phosphate dehydratase/ UDP-N-acetyl- -D-glucosamine a single an [eIF5A- spermidine D-threo-7,8- a nucleoside a uracil in DNA a 2'- α-amylose UDP-2,3- a nascent peptidoglycan a nascent peptidoglycan with a nascent peptidoglycan D-alanine) tetrapeptide deacetylase: D-glucopyranuronate -acetylmuramoyl-L-alanyl-γ- vernolate an acyl phosphate cis-dienelactone homogentisate UDP-N-acetylmuramoyl- hydroxydecanoyl]- aconitate hydratase: stranded DNA precursor]-lysine dihydroneopterin triphosphate deoxyribonucleoside diacylglucosamine with L,D cross links (meso- (L-alanyl-γ-D-glutamyl-meso- with (L-alanyl-γ-D-glutamyl- BS55_RS0115645 acetyl-CoA D-glutamyl-L-lysyl- D-alanine nucleotide 1,4-alpha-glucan tripeptide--D-alanyl- α-D-glucosamine BS55_RS0100875 deoxynucleoside dienelactone homogentisate diphosphatase: diaminopimelate containing) 2,6-diaminopimelate) tripeptide meso-2,6-diaminopimeloyl- N-acetylglucosamine- D-gluconate pyrophosphohydrolase: epoxide hydrolase: acylphosphatase: branching D- alanine ligase: UDP-2,3- cis-2- undecaprenyldiphospho- exodeoxyribonuclease deoxyhypusine dihydroneopterin uracil-DNA kinase: hydrolase: 1,2-dioxygenase: BS55_RS0125020 glycine) tetrapeptide 6-phosphate degradation BS55_RS0114875 BS55_RS0103515 BS55_RS0114850 protein GlgB: BS55_RS0116810 diacylglucosamine methylaconitate muramoylpentapeptide beta-N- VII: BS55_RS27020 synthase: aldolase: glycosylase: BS55_RS0100160 BS55_RS0102315 BS55_RS0105420 UDP-2,3- deacetylase: D-galactonate degradation (9Z)-12,13- a 2'- BS55_RS26670 aldehydo-D-glucuronate acetylglucosaminyltransferase: nucleoside triphosphate 4-maleyl- bifunctional UDP-N- diphosphatase: diacylglucosamine bifunctional D-gluconate BS55_RS0107275 BS55_RS0125615 BS55_RS0113445 BS55_RS0116845 2-maleylacetate a mature peptidoglycan a mature peptidoglycan with BS55_RS28510 pyrophosphohydrolase: dihydroxyoctadeca- deoxyribonucleoside a carboxylate acetoacetate amylopectin acetylmuramoyl-tripeptide:D- BS55_RS0125020 glucuronate aconitate hydratase gluconokinase: BS55_RS0124400 diphosphatase: with L,D cross-links (meso- (L-alanyl-γ-D-glutamyl-meso- a mature peptidoglycan D-glucosamine D-galactonate BS55_RS0100150 9-enoate 5'-monophosphate alanyl-D-alanine ligase/ UDP-2,3- isomerase: 2/2-methylisocitrate acetate conversion BS55_RS0114790 an [eIF5A- BS55_RS0105785 diaminopimelate containing) 2,6-diaminopimelate) tripeptide with (L-alanyl-γ-D-glutamyl- 6-phosphate D-gluconate ditrans,octacis-undecaprenyldiphospho- a ribonucleoside a single-stranded propane- 6-(hydroxymethyl) glycolaldehyde a nucleoside 5'- an apyrimidinic uracil alanine racemase: galactonate to acetyl-CoA UDP precursor]- diacylglucosamine BS55_RS0116775 dehydratase: N-acetyl-(N-acetylglucosaminyl)muramoyl- oligodeoxyribonucleotide 1,3-diamine -7,8-dihydropterin monophosphate site in DNA lipid X meso-2,6-diaminopimeloyl- phosphoglucosamine 6-phosphate 5'-monophosphate BS55_RS0118575 diphosphatase: dehydratase: BS55_RS0100375 γ deoxyhypusine glycine) tetrapeptide mutase: D-fructuronate acetate L-alanyl- -D-glutamyl-L-lysyl-D-alanine BS55_RS0105785 BS55_RS0104460 (2R,3S)-2- UDP-N-acetyl-α-D-muramoyl-L- lipid-A-disaccharide BS55_RS0110870 2-dehydro-3-deoxy- methylisocitrate acetate--CoA ligase: alanyl-γ-D-glutamyl-meso-2,6- lipid X (P. putida) synthase: α-D-glucosamine α undecaprenyl-diphospho-N-acetylmuramoyl-L- 5-dehydro-4-deoxy- a (1->4)- D-galactonate BS55_RS0122875 UDP-N-acetyl- -D-glucosamine 5-amino-4- lipid IV (E. coli) CMP-Kdo hydrogen (4R)-4-hydroxy- BS55_RS0102095 γ PRPP A A(H2) HMG-CoA 4-nitrocatecholsulfate trans-dienelactone 15-cis-phytoene (S)-mandelate α diaminopimeloyl-D-alanyl-D-alanine 1-phosphate acetyl-CoA alanyl- -D-glutamyl-L-lysyl- D-alanyl-D-alanine imidazolecarboxyamide peroxide 2-oxoglutarate D-glucuronate -D-glucan phospho-N-acetylmuramoyl- lipid-A-disaccharide lipid A disaccharide methylisocitrate 5-dehydro-4-deoxy- sulfatase: 1,4-alpha-glucan D-mannonate dienelactone phytoene mandelate synthase: (E. coli) lyase: undecaprenyldiphospho- D-glucuronate branching pentapeptide- transferase: 3-deoxy-D-manno- BS55_RS0112410 hydrolase: desaturase: racemase: BS55_RS0102095 BS55_RS0100885 muramoylpentapeptide beta-N- adenine catalase/ hydroxymethylglutaryl- ketohydroxyglutarate isomerase: protein GlgB: BS55_RS0124415 tetraacyldisaccharide 4'- mannonate 2-dehydro-3-deoxy- octulosonic acid sulfatase: BS55_RS0102315 BS55_RS0111545 BS55_RS0111595 undecaprenyldiphospho-N-acetylmuramoyl- lipid A N-acetyl-α-D- acetylglucosaminyltransferase: phosphoribosyltransferase: peroxidase HPI: CoA lyase: aldolase: BS55_RS0117170 BS55_RS26670 kinase: BS55_RS28085 dehydratase: D-galactonate transferase: BS55_RS0124620 9,15,9'-tri-cis L-alanyl-γ-D-glutamyl-meso-2,6- disaccharide glucosamine BS55_RS0124400 BS55_RS0111965 BS55_RS0102465 BS55_RS0101925 BS55_RS0116765 3-deoxy-D-glycero- 2-maleylacetate (R)-mandelate BS55_RS0110120 6-phosphate pyruvate succinate BS55_RS0115075 4-nitrocatechol -ζ-carotene starch diaminopimeloyl-D-alanyl-D-alanine (P. putida) lipid IV (E. coli) 1-phosphate 2,5-hexodiulosonate A 2-dehydro-3- undecaprenyldiphospho- tetraacyldisaccharide 4'- ditrans,octacis-undecaprenyldiphospho-N- UDP deoxy-D-gluconate AICAR α-Kdo-(2->6)- A H O acetoacetate acetyl-CoA glyoxylate pyruvate muramoylpentapeptide beta-N- kinase: BS55_RS28085 acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L- CMP 2 γ lipid IV (E. coli) acetylglucosaminyltransferase: lipid IV UDP-N-acetyl- D-glyceraldehyde alanyl- -D-glutamyl-L-lysyl-D-alanyl-D-alanine A A pyruvate BS55_RS0124400 (P. putida) α-D-glucosamine 3-phosphate UDP-N-acetylglucosamine lipid II (meso diaminopimelate containing) dehypoxanthine RNase R degradation (S)-4- a supercoiled 1-carboxyvinyltransferase: KDGP H + hydrogencarbonate FMN NAD(P)H H + methyl red canavaninosuccinate an adenine in DNA a folate prephenate nitric oxide futalosine SAM substrate RNA hydroxymandelate duplex DNA BS55_RS0118845 type I restriction- dihydrofolate mandelate prephenate replicative NO-inducible UDP-N-acetyl-α- modification reductase: FMN-dependent argininosuccinate racemase: dehydratase: DNA helicase: flavohemoprotein: D-glucosamine- dehypoxanthine carbonic anhydrase: ribonuclease R: FMN reductase: system subunit M: BS55_RS0111485 NADH-azoreductase: lyase: BS55_RS0111595 BS55_RS0118745 BS55_RS0101655 BS55_RS0101525 enolpyruvate futalosine cyclase: BS55_RS0121605 BS55_RS0113585 BS55_RS0105095 BS55_RS0120410 [+ 3 isozymes] D-glyceraldehyde BS55_RS0118340 BS55_RS0119545 6 (R)-4- 3-phenyl-2- a single UDP-N- BS55_RS0118380 an N -methyladenine nitrate 3-phosphate pyruvate a 7,8-dihydrofolate hydroxymandelate oxopropanoate stranded DNA acetylmuramate in DNA cyclic dehydrogenase: CO H O a diribonucleotide a nucleoside 5'- FMNH NAD(P) + N,N-dimethyl-1,4- 5'-deoxyadenosine dehypoxanthine 2 2 2 anthranilate L-canavanine fumarate BS55_RS0105690 Nucleoside and Nucleotide Degradation met monophosphate phenylenediamine UDP-N-acetyl- futalosine α-D-muramate inosine 5'-phosphate guanosine purine ribonucleosides degradation degradation nucleotides an (S-diacyl-sn- an α-D- p-nitrophenyl- D-glucopyranose D-ribulose an L-1- ammonium NAD + H O uroporphyrinogen-III + fumarate β 2 chloroacetaldehyde an aliphatic amine a nitrile NAD degradation III phosphatidylethanolamine glyceryl)-L-cysteinyl- asp galactoside -D-galactoside 6-phosphate 5-phosphate [apolipoprotein] uroporphyrinogen-III inositol-3-phosphate aldehyde IMP copper amine ribulose-phosphate UDP-N-acetyl- adenosine C-methyltransferase: nitrilase: NAD kinase: α GMP synthase: dehydrogenase oxidase: 3-epimerase: -D-muramoyl- alpha-galactosidase: beta-glucosidase: nitrite reductase BS55_RS0115620 IMP dehydrogenase: 5'-nucleotidase: apolipoprotein N- L-aspartate oxidase: BS55_RS0109250 BS55_RS0104380 (NADP(+)): BS55_RS0121835 BS55_RS0100380 BS55_RS0105595 L-alanyl-γ-D- BS55_RS0123880 BS55_RS0108010 large subunit: BS55_RS0118830 BS55_RS0108285 acyltransferase: BS55_RS0117280 uroporphyrinogen-III BS55_RS0111045 D-xylulose glutamyl-meso-2,6- BS55_RS0124205 BS55_RS0109255 Ins(3)P an aldehyde a carboxylate NADP + diaminopimelate XMP [+ 2 isozymes] C-methyltransferase: 2-chloroacetate 5-phosphate guanosine α-D- a non BS55_RS0112700 an N-acyl-(S-diacyl- D-galactopyranose 4-nitrophenol 5'-nucleotidase: a 2-acyl-1-lyso- 2-iminosuccinate succinate galactopyranose galactosylated nitrite precorrin-2 xanthosine adenosine inosine guanosine sn-glyceryl)-L- BS55_RS0108285 purine-nucleoside phosphatidylethanolamine galactose acceptor phosphorylase: cysteinyl-[lipoprotein] [+ 2 isozymes] BS55_RS0121350

purine-nucleoside purine-nucleoside purine-nucleoside purine-nucleoside β 1402 xanthosine β a -D-glucosyl-N a cytidine D-ribose 5- uridine phosphorylase: dethiobiotin a sulfurated a -D-galactoside F6P N-acetylneuraminate uroporphyrinogen-I reduced riboflavin methylglyoxal guanine phosphorylase: phosphorylase: phosphorylase: SAM -acylsphingosine in 16S rRNA thr phosphate BS55_RS0121350 BS55_RS0121350 BS55_RS0121350 BS55_RS0121350 [sulfur carrier] 16S rRNA uroporphyrinogen ribose 5-phosphate glyoxalase: uridine kinase: purine-nucleoside threonine ammonia- FMN reductase: N-acetylneuraminate (cytosine(1402)-N(4) decarboxylase: isomerase B: BS55_RS0110225 BS55_RS0102070 phosphorylase: α-D-ribose- beta-glucosidase: fructose-6- : lyase IlvA: BS55_RS0105095 lyase: )-methyltransferase BS55_RS0114250 BS55_RS0126060 [+ 3 isozymes] BS55_RS0121350 1-phosphate biotin synthase BioB: BS55_RS0108010 phosphate aldolase: BS55_RS0115245 BS55_RS0122060 UMP BS55_RS27205 RsmH: D-ribulose pyrimidine deoxyribonucleotides BS55_RS0113375 BS55_RS0113575 coproporphyrinogen I riboflavin (R)-lactate UTP and CTP dephosphorylation I 4 BS55_RS0124435 2-oxobutanoate 5-phosphate xanthine xanthine dephosphorylation an N - N-acetyl-D- 1402 nucleoside triphosphate D-galactopyranose a non galactosylated D-glyceraldehyde D-glucopyranose a sphingosine methylcytidine UTP biotin 5'-deoxyadenosine an unsulfurated dihydroxyacetone mannosamine pyruvate pyrophosphohydrolase: D-ribose 5- met galactose acceptor 3-phosphate ceramide in 16S rRNA phosphate [sulfur carrier] BS55_RS0100150 CTP synthase: NTPase: urate urate nucleotide BS55_RS0113990 BS55_RS27240 pyrophosphohydrolase: 3-methyl-2- 5,10-methylene- a long-chain N-acetyl-β- an [amino group carrier 2-hydroxy-2- (indole-3-yl) an N-acyl-D- dCTP a sialyloligosaccharide NADPH H + stachyose γ a DNA segment DHAP BS55_RS0114875 CTP UDP oxobutanoate tetrahydromethanopterin fatty acyl-CoA neuraminate protein]-C-terminal- - methylpropanenitrile acetonitrile glucosamine dCTP dCMP (L-glutamyl)-L-glutamate N-acylglucosamine methylglyoxal dCTP deaminase: NTPase: acetylglutamate nitrilase: recombinase RecA: nitrilase: 2-epimerase: synthase: BS55_RS0116685 BS55_RS27240 3-methyl-2-oxobutanoate exo-alpha-sialidase: alpha-galactosidase: N-acetylneuraminate kinase: acyl-CoA reductase: BS55_RS0119675 BS55_RS0115620 BS55_RS0115620 BS55_RS0107760 nucleoside triphosphate hydroxymethyltransferase: BS55_RS0124570 lyase: BS55_RS0119815 BS55_RS0124580 CDP UMP BS55_RS0100450 BS55_RS0123880 an N-acyl-D- dUTP pyrophosphohydrolase: BS55_RS0100520 BS55_RS27205 an [amino group carrier a DNA segment in 2-hydroxy-2- (indol-3-yl)acetate methylglyoxal BS55_RS0100150 5'-nucleotidase: protein]-C-terminal- reverse orientation methylpropanoate mannosamine BS55_RS0108285 α-D- β γ-(5-phospho-L- nucleotide N-acetylneuraminate an oligosaccharide a long-chain raffinose N-acetyl- -D- galactopyranose pyruvate glutamyl)-L-glutamate pyrophosphohydrolase: CMP [+ 2 isozymes] 2-dehydropantoate THMPT fatty aldehyde mannosamine BS55_RS0114875 dUTP dUMP 5'-nucleotidase: uridine BS55_RS0108285 a generic p-nitrophenyl-α-D- 5-chloro-trans CTP [+ 2 isozymes] seleno-L- raffinose NADP + FMNH 3'-ketolactose 3-phenylpropionitrile D-glucopyranose GDP-β-L-fucose ferroheme o galactopyranoside 2 5-hydroxy-CTP 5-hydroxy-CMP polynucleotide substrate homocysteine -dienelactone cytidine dienelactone glucose 1- GDP-L-fucose dCTP deaminase: 5-methyltetrahydropteroyltriglutamate- nitrilase: heme A synthase: hydrolase: dehydrogenase: synthase: BS55_RS0116685 - homocysteine S-methyltransferase: alpha-galactosidase: alpha-galactosidase: beta-glucosidase: BS55_RS0115620 BS55_RS0125435 S1/P1 nuclease: FMN reductase: BS55_RS0102315 BS55_RS0110515 BS55_RS0120865 BS55_RS0114670 BS55_RS0123880 BS55_RS0123880 BS55_RS0108010 UTP BS55_RS0107690 BS55_RS0105095 D-glucono- GDP-4-dehydro- 5-chloromaleylacetate α ferroheme a purine deoxyribonucleosides degradation I 3-phenylpropanoate 1,5-lactone -D-rhamnose adenosine SeMet α-D- 3-keto-β-D- nucleotides D-galactopyranose sucrose D-glucopyranose a 5'-phosphomononucleotide a 5'-phosphooligonucleotide 4-nitrophenol galactopyranose FMN NADPH H + galactose degradation III 2'-deoxyinosine 2'-deoxyadenosine 2'-deoxyguanosine

AMP 6 an N -L- XLLG xyloglucan 1402 N-acetyl-β-D- + a cytidine 2-chloro-trans 3-octaprenyl-4- phosphoenol threonylcarbamoyladenine 37 melibionate FMN NADH H D-glucopyranose purine-nucleoside purine-nucleoside purine-nucleoside AMP nucleosidase: L-homocysteine oligosaccharide in 16S rRNA -dienelactone hydroxybenzoate mannosamine pyruvate in tRNA phosphorylase: phosphorylase: phosphorylase: BS55_RS0101335 16S rRNA dienelactone UbiD family glucose 1- N-acylglucosamine 5-methyltetrahydropteroyltriglutamate- tRNA pyruvate kinase: BS55_RS0121350 BS55_RS0121350 BS55_RS0121350 (cytidine(1402)-2'-O) hydrolase: decarboxylase: dehydrogenase: 2-epimerase: adenine - homocysteine S-methyltransferase: threonylcarbamoyladenosine beta-glucosidase: alpha-galactosidase: BS55_RS0114650 FMN reductase: -methyltransferase: BS55_RS0102315 BS55_RS0113485 BS55_RS0110515 BS55_RS0124580 BS55_RS0114670 dehydratase: BS55_RS0112775 BS55_RS0108010 BS55_RS0123880 2-deoxy-α-D- a cyclic N 6 -L- BS55_RS0105095 a 2'-O- BS55_RS0124195 D-glucono- 2-chloromaleylacetate 2-octaprenylphenol GlcNAc pyruvate ribose 1-phosphate met threonylcarbamoyladenosine methylcytidine 1402 1,5-lactone 37 in tRNA XXXG xyloglucan α-D- D-galactopyranose D-gluconate in 16S rRNA oligosaccharide galactopyranose FMNH NAD + 2

Inorganic Nutrient Metabolism 2,5-diamino-6-(5- XLXG xyloglucan an [amino group carrier protein]- a 3,5,7,9,11,13,15- 2,5-dichloro-trans 2-chloro-cis- D-sedoheptulose N-acetyl-D- phospho-D-ribitylamino) a pseudouridine 1915 in 23S rRNA γ a D-threo-aldose (S)-malate oligosaccharide C-terminal- -(L-glutamate 5- hepta-oxo- -dienelactone dienelactone 7-phosphate mannosamine selenate reduction pyrimidin-4(3H)-one assimilatory 23S rRNA semialdehyde-2-yl)-L-glutamate hexadecanoyl-[PKS-acp] dienelactone dienelactone phosphoheptose L-fucose N-acylglucosamine malate:quinone urea cycle bifunctional N-acetyl-gamma- aldo/keto reductase: sulfate reduction III (pseudouridine(1915)- hydrolase: hydrolase: isomerase: dehydrogenase: 2-epimerase: oxidoreductase: diaminohydroxyphosphoribosylaminopyrimidine beta-glucosidase: glutamyl-phosphate BS55_RS0102620 selenate N(3))-methyltransferase BS55_RS0102315 BS55_RS0102315 BS55_RS0114375 BS55_RS0102975 BS55_RS0124580 BS55_RS0104265 ammonium deaminase/5-amino-6-(5-phosphoribosylamino) BS55_RS0108010 reductase: sulfate sulfate RlmH: BS55_RS0101645 [+ 10 isozymes] a (2S,3R)-aldono- N-acetyl-D- uracil reductase RibD: BS55_RS0101875 3 1915 an [amino group carrierBS55_RS0119635 protein]- 9-hydroxy-3,5,7,11,13,15- D-glycero-D-manno- sulfate 5-amino-6-(5-phospho- an N -methylpseudouridine 2,5-dichloromaleylacetate 2-chloromaleylacetate glucosamine oxaloacetate adenylyltransferase: carbamoyl- C-terminal-γ-(5-phospho- hexaoxohexadecanoyl- heptose 7-phosphate 1,5-lactone adenylyltransferase: arg D-ribitylamino)uracil in 23S rRNA BS55_RS0112680 phosphate synthase XXXG xyloglucan L-glutamyl)-L-glutamate [PKS-acp] BS55_RS0112680 arginase: D-galactopyranose sulfate large subunit: oligosaccharide BS55_RS0107905 adenylyltransferase sulfate BS55_RS0124900 adenylyltransferase argininosuccinate subunit CysD: a (1->6)- XXLG xyloglucan 3-(4- 2'-deoxycytidine lyase: glutamine- 2-amino-6-[1-hydroxyethyl]- 3-phenyl-2- β D-altropyranose D-glucopyranose cellulose BS55_RS0112685 subunit CysD: α-D-glucan oligosaccharide hydroxyphenyl) a uridine in tRNA -carotene adenosine 5'- BS55_RS0119545 hydrolyzing 7-methyl-7,8-dihydropterin oxopropanoate deoxynucleoside BS55_RS0112685 cycloisomaltooligosaccharide pyruvate phosphoselenate carbamoyl- 2-amino-4-hydroxy-6- 4-hydroxyphenylpyruvate tRNA dihydrouridine beta-carotene 15,15'- L-fucose isomerase: xylose isomerase: kinase: endoglucanase: APS glucanotransferase: 4-hydroxyphenylpyruvate L-arginino- phosphate synthase hydroxymethyldihydropteridine dioxygenase: synthase DusB: monooxygenase: BS55_RS0110760 BS55_RS0110895 BS55_RS0100160 L-ornithine beta-glucosidase: dioxygenase: BS55_RS0112875 phosphoadenylyl- succinate small subunit: diphosphokinase: BS55_RS26805 BS55_RS0119065 BS55_RS0105415 BS55_RS0114840 BS55_RS0119455 [1-(2-amino-7-methyl-4-oxo- BS55_RS0108010 BS55_RS0105415 dCMP sulfate reductase: BS55_RS0102140 a cycloisomaltooligosaccharide (2-hydroxyphenyl) a 5,6-dihydrouridine keto-D-psicose keto-D-fructose a cellodextrin 7,8-dihydro-3H-pteridin- all-trans-retinal selenite BS55_RS0112690 acetate homogentisate in tRNA carbamoyl 6-yl)]ethyl diphosphate XXXG xyloglucan sulfite phosphate oligosaccharide D-galactopyranose argininosuccinate synthase: BS55_RS0119640 selenodiglutathione L-citrulline hydrogen sulfide Detoxification phosphate acquisition glutathioselenol a phosphate reactive oxygen species degradation arsenate arsenate monoester acid phosphatase: detoxification V detoxification superoxide BS55_RS0115720 II (glutaredoxin) arsenate superoxide dismutase: hydrogen selenide phosphate glyceraldehyde- arsenate BS55_RS0101950 arsenate reductase 3-phosphate (glutaredoxin): [+ 2 isozymes] dehydrogenase: BS55_RS0101105 BS55_RS0115070 hydrogen peroxide 1-arseno-3- arsenite phosphoglycerate catalase: katE catalase/peroxidase HPI: BS55_RS0102465 1-arseno-3- H O hydroxyl radical arsenite 2 phosphoglycerate O 2

a reduced a reduced a reduced a reduced plastocyanin plastocyanin plastocyanin plastocyanin phosphate phosphate O phosphonate a nicotinamide a nicotinamide a C4- a C4- an inorganic an inorganic an oxidized an oxidized an oxidized an oxidized 2 a siderophore a nucleotide D-glucose plastocyanin plastocyanin plastocyanin plastocyanin L-rhamnose a nucleoside phosphate phosphate ammonium arsenite H O phosphite mononucleotide mononucleotide dicarboxylate dicarboxylate anion anion phosphate 2 a lipopolysaccharide chromate predicted predicted ABC ABC RS0106310 RS0100465 RS0122935 RS0105775 RS0118555 RS0106460 RS0124930 RS0104260 RS0110935 RS0112935 RS0121610 RS0103935 RS0125425 RS0125430 RS0125445 RS0105855 RS0122410 RS0124240 RS0106460 RS0116285 RS0113335 RS0107670 RS0107400 RS0125445 transporter transporter of phosphate of phosphate D-glucose phosphonate a nicotinamide a nicotinamide a C4- a C4- an inorganic an inorganic L-rhamnose a siderophore a nucleotide a nucleoside phosphate phosphate ammonium arsenite a reduced a lipopolysaccharide chromate phosphite mononucleotide mononucleotide dicarboxylate dicarboxylate anion anion O O O O 2 2 2 2 phosphate c-type H O H O H O H O phosphate phosphate 2 2 2 2 cytochrome an oxidized c-type cytochrome This diagram was automatically generated by SRI International Pathway Tools version 25.0, authors S. Paley and P.D. Karp.