Amino Acid Requirements of the Free-Living Nematode Caenorhabditis Briggsae

Total Page:16

File Type:pdf, Size:1020Kb

Amino Acid Requirements of the Free-Living Nematode Caenorhabditis Briggsae AMINO ACID REQUIREMENTS OF THE FREE-LIVING NEMATODE CAENORHABDITIS BRIGGSAE BY J. R. VANFLETEREN Instituut voor Dierkunde, Laboratoria voor Morfologie en Systematiek, RijksuniversiteitGent, Belgium Washed yeast ribosomes promote growth and reproduction of C. briggsae, even when supple- mented to the basal medium at dosages too low to provide the organisms with sufficient amounts of essential amino acids. Hence, a re-investigation of the amino acid requirements of C. briggsae by single and multiple omission of amino acids from the basal medium revealed unambiguously that arginine, histidine, lysine, tryptophan, phenylalanine, methionine, threonine, leucine, isoleucine and valine are not synthetized at levels to permit reproduction; they are called essential amino acids. The requirement for arginine and isoleucinehowever appears to be less clear-cut. On the contrary, evidence is presented that alanine, asparagine, cysteine, glutamate, glutamine, glycine, proline, serine and tryosine can be synthetized at adequate levels; they are called non- essential amino acids. In addition it was shown that multiple omission of the non-essential amino acids is not deleterious. This is believed to be an important step towards the development of a minimum essential medium (MEM) for growth and reproduction of C. briggsae. Sustained growth of the free-living nematode Caenorhabditis brigg.rae can be obtained on a chemically defined medium, supplemented with adequate levels of a proteinaceous growth factor. The most satisfactory, chemically defined medium hitherto reported (Buecher, Hansen & Yarwood, 1966), has been called C. brigg.iae Maintenance Medium (CbMM) and is now commercially available. CbMM is an extremely rich medium, being composed of 53 components, all present at high concentrations. The level of many components is probably unnecessarily high (Sayre, Hansen & Yarwood, 1963); other components might be non-essential and could be omitted. Precise nutritional studies are however difficult to perform in the presence of unidentified material such as the growth factor (Sayre et al., 1963). Thus Dougherty, Hansen, Nicholas, Mollet & Yarwood (1959) could only give preliminary evidence that the following amino acids are essential: arginine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, threonine, tryptophan and valine. More insight in the amino acid metabolism was gained by adding radioactive amino acid precursors to the medium and subsequent determination of the labeled amino acids by chromatography and radioautography. The biosynthesis of 16 amino acids could be demonstrated with this technique: aspartic acid, glutamic acid, alanine, proline, glycine, cysteine and cystine (as cysteic acid) and serine (Nicholas, Dougherty, Hansen, Holm-Hansen & Moses, 1960; Rothstein & Tom- linson 1961, 1962); arginine, threonine, tyrosine, valine, leucine, isoleucine, 94 histidine and lysine (Rothstein & Tomlinson, 1961, 1962). The biosynthesis of tryptophan, methionine and phenylalanine has not been reported so far, but cannot be excluded since these amino acids are easily lost or destroyed under the conditions of isolation (Nicholas et al., 1960; Rothstein & Tomlinson, 1962). The use of data, obtained from radioactive labelling seems to be very limited for getting more insight in the amino acid requirements of C. briggJae. As already outlined by Nicholas et al. ( 1 960) and Rothstein & Tomlinson (1961, 1962), the level of synthesis adequate to permit growth and reproduction cannot be deter- mined by this method. Recently, new and highly active growth promoting substances have been reported (Buecher, Hansen & Gottfried, 1969, 1970; Lower & Buecher, 1970). With one of them (yeast ribosomes), we have obtained excellent growth, when supplemented to CbMM at considerably reduced levels (expressed as protein content) as compared with the amounts of protein formerly administered (Dougherty et al., 1959). In our opinion, a re-examination of the nutritional requirements of C. briggsae in the light of this feature could be more rewarding. The elucidation of the amino acid requirements of C. brigg.rae might be an important step towards the development of a minimum essential medium. The availability of such a medium is indispensable for the isolation and identification of nutritional mutants. MATERIALSAND METHODS Highly purified ribosomes were prepared from bakers' yeast cake as described by Lower & Buecher (1970) (preparation of yeast extract) and Buecher et al., (1969) (isolation and purification of ribosomes from yeast extract) with slight modification. Briefly, yeast cake (550 g) was mixed with equal volumes of glass beads 0.2 mm in diameter and Tris-Mg buffer (5 X 10-`' M Tris; 5 X 10- M = MgC12; PH 7.6) and homogenized in a Waring Blendor (one gallon capacity) with cooling periods between grindings until approximatively 80% of the cells were disrupted. The homogenate was filtered through cheese cloth, centrifuged for 20 minutes at 10,000 X g and the supernatant again for 30 minutes at 30,000 X g. The ribosomes were subsequently sedimented at 105,000 X g for 3 hours and resuspended in Tris-Mg buffer. The suspension was treated addi- tionally with deoxyribonuclease for further purposes and washed twice as described by Buecher et al. (1969). The final suspension was filtered through Millipore filters of diminishing porosity and sterilized by passing through a sterile Millipore PH (0.30 membrane. The protein content was 4.9 mg/ml as determined by both the biuret (Robson, 1968) and Lowry (Lowry et al., 1951) methods; the DNA content 2.75 ttg/ml), estimated by the method of Burton (1956) can be neglected. Aliquots of 1 and 2 ml were transferred into sterile culture tubes and stored at -18° C until needed, because it has been observed that repeated freezing and thawing causes a loss of activity; in addition a general contamination is prevented. .
Recommended publications
  • Effect of Peptide Histidine Isoleucine on Water and Electrolyte Transport in the Human Jejunum
    Gut: first published as 10.1136/gut.25.6.624 on 1 June 1984. Downloaded from Gut, 1984, 25, 624-628 Alimentary tract and pancreas Effect of peptide histidine isoleucine on water and electrolyte transport in the human jejunum K J MORIARTY, J E HEGARTY, K TATEMOTO, V MUTT, N D CHRISTOFIDES, S R BLOOM, AND J R WOOD From the Department of Gastroenterology, St Bartholomew's Hospital, London, The Liver Unit, King's College Hospital, London, Department ofMedicine, Hammersmith Hospital, London, and Department of Biochemistry, Karolinska Institute, Stockholm, Sweden SUMMARY Peptide histidine isoleucine, a 27 amino acid peptide with close amino acid sequence homology to vasoactive intestinal peptide and secretin, is distributed throughout the mammalian intestinal tract, where it has been localised to intramural neurones. An intestinal perfusion technique has been used to study the effect of intravenous peptide histidine isoleucine (44.5 pmol/kg/min) on water and electrolyte transport from a plasma like electrolyte solution in human jejunum in vivo. Peptide histidine isoleucine infusion produced peak plasma peptide histidine isoleucine concentrations in the range 2000-3000 pmolIl, flushing, tachycardia and a reduction in diastolic blood pressure. Peptide histidine isoleucine caused a significant inhibition of net absorption of water, sodium, potassium and bicarbonate and induced a net secretion of chloride, these changes being completely reversed during the post-peptide histidine isoleucine period. These findings suggest that endogenous peptide histidine isoleucine may participate in the neurohumoral regulation of water and electrolyte transport in the human jejunum. http://gut.bmj.com/ Peptide histidine isoleucine, isolated originally from INTESTINAL PERFUSION mammalian small intestine, is a 27-amino acid After an eight hour fast, each subject swallowed a peptide having close amino acid sequence homology double lumen intestinal perfusion tube, incorpo- to vasoactive intestinal peptide and secretin.
    [Show full text]
  • Workshop 1 – Biochemistry (Chem 160)
    Workshop 1 – Biochemistry (Chem 160) 1. Draw the following peptide at pH = 7 and make sure to include the overall charge, label the N- and C-terminus, the peptide bond and the -carbon. AVDKY Give the overall charge of the peptide at pH = 3 and 12. 2. Draw a titration curve for Arg, make sure to label the different points. Determine the pI for Arg. 3. Nonpolar solute + water = solution a. What is the S of the universe, system and surroundings? The S of the universe would decrease this is why it is not spontaneous, the S of the system would increase but to a lesser extent to which the S of the surrounding would decrease S universe = S system + S surroundings 4. What is the hydrophobic effect and explain why it is thermodynamically favorable. The hydrophobic effect is when hydrophobic molecules tend to clump together burying them and placing hydrophilic molecules on the outside. The reason this is thermodynamically favorable is because it frees caged water molecules when burying clumping the hydrophobic molecules together. 5. Urea dissolves very readily in water, but the solution becomes very cold as the urea dissolves. How is this possible? Urea dissolves in water because when dissolving there is a net increase in entropy of the universe. The heat exchange, getting colder only reflects the enthalpy (H) component of the total energy change. The entropy change is high enough to offset the enthalpy component and to add up to an overall -G 6. A mutation that changes an alanine residue in the interior of a protein to valine is found to lead to a loss of activity.
    [Show full text]
  • Amino Acid Recognition by Aminoacyl-Trna Synthetases
    www.nature.com/scientificreports OPEN The structural basis of the genetic code: amino acid recognition by aminoacyl‑tRNA synthetases Florian Kaiser1,2,4*, Sarah Krautwurst3,4, Sebastian Salentin1, V. Joachim Haupt1,2, Christoph Leberecht3, Sebastian Bittrich3, Dirk Labudde3 & Michael Schroeder1 Storage and directed transfer of information is the key requirement for the development of life. Yet any information stored on our genes is useless without its correct interpretation. The genetic code defnes the rule set to decode this information. Aminoacyl-tRNA synthetases are at the heart of this process. We extensively characterize how these enzymes distinguish all natural amino acids based on the computational analysis of crystallographic structure data. The results of this meta-analysis show that the correct read-out of genetic information is a delicate interplay between the composition of the binding site, non-covalent interactions, error correction mechanisms, and steric efects. One of the most profound open questions in biology is how the genetic code was established. While proteins are encoded by nucleic acid blueprints, decoding this information in turn requires proteins. Te emergence of this self-referencing system poses a chicken-or-egg dilemma and its origin is still heavily debated 1,2. Aminoacyl-tRNA synthetases (aaRSs) implement the correct assignment of amino acids to their codons and are thus inherently connected to the emergence of genetic coding. Tese enzymes link tRNA molecules with their amino acid cargo and are consequently vital for protein biosynthesis. Beside the correct recognition of tRNA features3, highly specifc non-covalent interactions in the binding sites of aaRSs are required to correctly detect the designated amino acid4–7 and to prevent errors in biosynthesis5,8.
    [Show full text]
  • Convenient Preparation of Poly(L-Histidine) by the Direct Polymerization of L-Histidine Or Nim Benzyl-L-Histidine with Diphenylphosphoryl Azide
    Polymer Journal, Vol. 13, No. 12, pp 1151-1154 (1981) SHORT COMMUNICATION Convenient Preparation of Poly(L-histidine) by the Direct Polymerization of L-Histidine or Nim_Benzyl-L-histidine with Diphenylphosphoryl Azide Takumi NARUSE, Bun-ichiro NAKAJIMA, Akihiro TSUTSUMI, and Norio NISHI Department of Polymer Science, Faculty of Science, Hokkaido University, Nishi 8-chome, Kita 10-jo, Kita-ku, Sapporo 060, Japan. (Received August 14, 1981) KEY WORDS Polymerization I Diphenylphosphoryl Azide (DPPA) I L- Histidine I N'm-Benzyl-L-histidine I Poly(L-histidine) I Poly(N'm-benzyl-L­ histidine) I IR Spectrum I 13C NMR Spectrum I Intrinsic Viscosity I Poly(L-histidine) is a very interesting poly(a­ histidine) by the polymerization of L-histidine with amino acid) as a synthetic functional polymer or as iodine-phosphonic acid esters was unsuccessful. The a model for the functional biopolymer such as simplification of the synthetic route for poly(L­ enzymes. It is known, however, that poly(L­ histidine) is still necessary. histidine) can not be prepared by the Fuchs­ Diphenylphosphoryl azide (DPPA) has been used Farthing method 1 which is very popular for prepar­ as a convenient reagent for racemization-free pep­ ing poly(a-amino acid)s. A synthetic route with tide synthesis, since it was synthesized by Shioiri et several steps involving the synthesis of NCA (a­ a!. in 1972.6 Recently, we reported that this reagent amino acid N-carboxyanhydride) by the rather can also be used successfully for the polymerization classical Leuchs method/ have been used for the of amino acids or peptides.
    [Show full text]
  • Amino Acid Chemistry
    Handout 4 Amino Acid and Protein Chemistry ANSC 619 PHYSIOLOGICAL CHEMISTRY OF LIVESTOCK SPECIES Amino Acid Chemistry I. Chemistry of amino acids A. General amino acid structure + HN3- 1. All amino acids are carboxylic acids, i.e., they have a –COOH group at the #1 carbon. 2. All amino acids contain an amino group at the #2 carbon (may amino acids have a second amino group). 3. All amino acids are zwitterions – they contain both positive and negative charges at physiological pH. II. Essential and nonessential amino acids A. Nonessential amino acids: can make the carbon skeleton 1. From glycolysis. 2. From the TCA cycle. B. Nonessential if it can be made from an essential amino acid. 1. Amino acid "sparing". 2. May still be essential under some conditions. C. Essential amino acids 1. Branched chain amino acids (isoleucine, leucine and valine) 2. Lysine 3. Methionine 4. Phenyalanine 5. Threonine 6. Tryptophan 1 Handout 4 Amino Acid and Protein Chemistry D. Essential during rapid growth or for optimal health 1. Arginine 2. Histidine E. Nonessential amino acids 1. Alanine (from pyruvate) 2. Aspartate, asparagine (from oxaloacetate) 3. Cysteine (from serine and methionine) 4. Glutamate, glutamine (from α-ketoglutarate) 5. Glycine (from serine) 6. Proline (from glutamate) 7. Serine (from 3-phosphoglycerate) 8. Tyrosine (from phenylalanine) E. Nonessential and not required for protein synthesis 1. Hydroxyproline (made postranslationally from proline) 2. Hydroxylysine (made postranslationally from lysine) III. Acidic, basic, polar, and hydrophobic amino acids A. Acidic amino acids: amino acids that can donate a hydrogen ion (proton) and thereby decrease pH in an aqueous solution 1.
    [Show full text]
  • Amino Acids Amino Acids
    Amino Acids Amino Acids What Are Amino Acids? Essential Amino Acids Non Essential Amino Acids Amino acids are the building blocks of proteins; proteins are made of amino acids. Isoleucine Arginine (conditional) When you ingest a protein your body breaks it down into the individual aminos, Leucine Glutamine (conditional) reorders them, re-folds them, and turns them into whatever is needed by the body at Lysine Tyrosine (conditional) that time. From only 20 amino acids, the body is able to make thousands of unique proteins with different functions. Methionine Cysteine (conditional) Phenylalanine Glycine (conditional) Threonine Proline (conditional) Did You Know? Tryptophan Serine (conditional) Valine Ornithine (conditional) There are 20 different types of amino acids that can be combined to make a protein. Each protein consists of 50 to 2,000 amino acids that are connected together in a specific Histidine* Alanine sequence. The sequence of the amino acids determines each protein’s unique structure Asparagine and its specific function in the body. Asparate Popular Amino Acid Supplements How Do They Benefit Our Health? Acetyl L- Carnitine: As part of its role in supporting L-Lysine: L-Lysine, an essential amino acid, is mental function, Acetyl L-Carnitine may help needed to support proper growth and bone Proteins (amino acids) are needed by your body to maintain muscles, bones, blood, as support memory, attention span and mental development. It can also support immune function. well as create enzymes, neurotransmitters and antibodies, as well as transport and performance. store molecules. N-Acetyl Cysteine: N-Acetyl Cysteine (NAC) is a L-Arginine: L-Arginine is a nonessential amino acid form of the amino acid cysteine.
    [Show full text]
  • Solutions to 7.012 Problem Set 1
    MIT Biology Department 7.012: Introductory Biology - Fall 2004 Instructors: Professor Eric Lander, Professor Robert A. Weinberg, Dr. Claudette Gardel Solutions to 7.012 Problem Set 1 Question 1 Bob, a student taking 7.012, looks at a long-standing puddle outside his dorm window. Curious as to what was growing in the cloudy water, he takes a sample to his TA, Brad Student. He wanted to know whether the organisms in the sample were prokaryotic or eukaryotic. a) Give an example of a prokaryotic and a eukaryotic organism. Prokaryotic: Eukaryotic: All bacteria Yeast, fungi, any animial or plant b) Using a light microscope, how could he tell the difference between a prokaryotic organism and a eukaryotic one? The resolution of the light microscope would allow you to see if the cell had a true nucleus or organelles. A cell with a true nucleus and organelles would be eukaryotic. You could also determine size, but that may not be sufficient to establish whether a cell is prokaryotic or eukaryotic. c) What additional differences exist between prokaryotic and eukaryotic organisms? Any answer from above also fine here. In addition, prokaryotic and eukaryotic organisms differ at the DNA level. Eukaryotes have more complex genomes than prokaryotes do. Question 2 A new startup company hires you to help with their product development. Your task is to find a protein that interacts with a polysaccharide. a) You find a large protein that has a single binding site for the polysaccharide cellulose. Which amino acids might you expect to find in the binding pocket of the protein? What is the strongest type of interaction possible between these amino acids and the cellulose? Cellulose is a polymer of glucose and as such has many free hydroxyl groups.
    [Show full text]
  • Nucleotide Base Coding and Am1ino Acid Replacemients in Proteins* by Emil L
    VOL. 48, 1962 BIOCHEMISTRY: E. L. SAIITH 677 18 Britten, R. J., and R. B. Roberts, Science, 131, 32 (1960). '9 Crestfield, A. M., K. C. Smith, and F. WV. Allen, J. Biol. Chem., 216, 185 (1955). 20 Gamow, G., Nature, 173, 318 (1954). 21 Brenner, S., these PROCEEDINGS, 43, 687 (1957). 22 Nirenberg, M. WV., J. H. Matthaei, and 0. WV. Jones, unpublished data. 23 Crick, F. H. C., L. Barnett, S. Brenner, and R. J. Watts-Tobin, Nature, 192, 1227 (1961). 24 Levene, P. A., and R. S. Tipson, J. Biol. Ch-nn., 111, 313 (1935). 25 Gierer, A., and K. W. Mundry, Nature, 182, 1437 (1958). 2' Tsugita, A., and H. Fraenkel-Conrat, J. Mllot. Biol., in press. 27 Tsugita, A., and H. Fraenkel-Conrat, personal communication. 28 Wittmann, H. G., Naturwissenschaften, 48, 729 (1961). 29 Freese, E., in Structure and Function of Genetic Elements, Brookhaven Symposia in Biology, no. 12 (1959), p. 63. NUCLEOTIDE BASE CODING AND AM1INO ACID REPLACEMIENTS IN PROTEINS* BY EMIL L. SMITHt LABORATORY FOR STUDY OF HEREDITARY AND METABOLIC DISORDERS AND THE DEPARTMENTS OF BIOLOGICAL CHEMISTRY AND MEDICINE, UNIVERSITY OF UTAH COLLEGE OF MEDICINE Communicated by Severo Ochoa, February 14, 1962 The problem of which bases of messenger or template RNA' specify the coding of amino acids in proteins has been largely elucidated by the use of synthetic polyri- bonucleotides.2-7 For these triplet nucleotide compositions (Table 1), it is of in- terest to examine some of the presently known cases of amino acid substitutions in polypeptides or proteins of known structure.
    [Show full text]
  • Impaired Amino Acid and TCA Metabolism and Cardiovascular Autonomic Neuropathy Progression in Type 1 Diabetes
    Diabetes Volume 68, October 2019 2035 Impaired Amino Acid and TCA Metabolism and Cardiovascular Autonomic Neuropathy Progression in Type 1 Diabetes Anna V. Mathew,1 Mamta Jaiswal,2 Lynn Ang,2 George Michailidis,3 Subramaniam Pennathur,1,4 and Rodica Pop-Busui2 Diabetes 2019;68:2035–2044 | https://doi.org/10.2337/db19-0145 GENETICS/GENOMES/PROTEOMICS/METABOLOMICS While diabetes is characterized by hyperglycemia, nutri- Cardiovascular autonomic neuropathy (CAN) is a widely ent metabolic pathways like amino acid and tricarboxylic prevalent chronic diabetes complication that is character- acid (TCA) cycle are also profoundly perturbed. As gly- ized by impaired autonomic control of the cardiovascular cemic control alone does not prevent complications, we system (1). Although the initial prevalence of CAN in hypothesized that these metabolic disruptions are re- patients newly diagnosed with type 1 diabetes is low, later sponsible for the development and progression of di- prevalence after 15 years of diabetes increases to 35% in abetic cardiovascular autonomic neuropathy (CAN). We patients with type 1 diabetes and 60% in patients with performed standardized cardiovascular autonomic re- type 2 diabetes (1–4). CAN is an independent predictor of fl ex tests and targeted fasting plasma metabolomic chronic kidney disease progression and of cardiovascular analysis of amino acids and TCA cycle intermediates disease morbidity and mortality in patients with diabetes in subjects with type 1 diabetes and healthy control (5–8). CAN is also associated with an increased risk of subjects followed for 3 years. Forty-seven participants cardiac arrhythmias, silent myocardial ischemia, myocar- with type 1 diabetes (60% female and mean 6 SD age dial dysfunction, and sudden death (1,2,4,5,8).
    [Show full text]
  • Valine and Isoleucine: the Next Limiting Amino Acids in Broiler Diets Vol
    Valine and Isoleucine: The next limiting amino acids in broiler diets Vol. 46 (1), April 2011, Page 59 Valine and Isoleucine: The next limiting amino acids in broiler diets Etienne Corrent (Ajinomoto Eurolysine S.A.S.) and Dr. Jörg Bartelt (Lohmann Animal Health GmbH & Co. KG) Drastic genetic changes have occurred in many commercial broiler lines during the last years with regard to performance. This genetic improvement needs a corresponding adjustment of our knowledge about amino acid nutrition in broilers. Additionally, today broiler feed formulators are not only focused on minimising the costs. They also have to take into consideration environmental issues and the impact of feed on broiler health. Reducing excess dietary crude protein (CP) is an important way of addressing these issues. The least cost formulation of the diet according to the ideal protein concept is the best way to supply an economic and a balanced amino acids feed for broiler, which can help to reduce the nitrogen excretion during the rearing period. What are the next limiting amino acids in broiler diets? To reduce dietary crude protein levels in broiler feed, it is necessary to know which indispensable amino acids become limiting in diets and what the requirement of broilers is. The usage of feed use amino acids (methionine sources, L-Lysine sources, L-Threonine) in broiler feed is well established. Depending on the requirement assumed for each amino acid, Valine, Isoleucine, Tryptophan and Arginine are generally considered as the next limiting amino acids in broiler feed. Indeed, the amino acid composition of protein differs between feedstuffs and can impact the order in which amino acids become limiting in diets.
    [Show full text]
  • Inhibition of Glycine Oxidation in Cultured Fibroblasts by Isoleucine
    Pediat. Res. 7: 945-947 (1973) Glycine isoleucine hyperglycemia Inhibition of Glycine Oxidation in Cultured Fibroblasts by Isoleucine RICHARD E. HILLMAN, [1S1 LUCILLE H. SOWERS, AND JACK L. COHEN Division of Medical Genetics, Department of Pediatrics, Washington University School of Medicine, St. Louis Children's Hospital, St. Louis, Missouri USA Extract Cultured fibroblasts were shown to oxidize glycine to CO2- Isoleucine (10 HIM) in- hibited glycine oxidation to CO2 by about 60% in a concentration range of from 0.025 to 10 mM glycine in fibroblasts grown from a patient with ^-ketothiolase defi- cienty. Glycine oxidation by control cell lines was not inhibited by isoleucine. These studies demonstrate an interrelation between isoleucine catabolism and glycine oxida- tion in fibroblasts cultured from a patient with the ketotic hyperglycinemia syndrome. Speculation Hyperglycinemia and hyperglycinuria seen in the "ketotic hyperglycinemia" syn- drome would appear to be secondary to accumulation of products of isoleucine catabolism. Thus, the varying levels of glycine reported in the serum and urine of these patients probably reflect differences in protein and isoleucine intake than rather primary blocks in glycine metabolism. Introduction deficiency [6], methylmalonyl-CoA mutase deficiency [8], and /?-ketothiolase deficiency [3]. a-Methyl-/3-hy- Since its original description by Childs et at. [2], the droxybutyrate was found in the patient with /?-keto- "ketotic hyperglycinemia" syndrome has been shown thiolase deficiency [3]. to be associated with three different defects in the pathway from isoleucine to succinyl-CoA. The sister of There has never been a satisfactory explanation of Childs' original patient was demonstrated to have pro- the elevated levels of glycine in serum and urine of pionyl-CoA carboxylase deficiency [4], other cases have patients with these disorders of isoleucine metabolism.
    [Show full text]
  • Amino Acid Catabolism: Urea Cycle the Urea Bi-Cycle Two Issues
    BI/CH 422/622 OUTLINE: OUTLINE: Protein Degradation (Catabolism) Digestion Amino-Acid Degradation Inside of cells Urea Cycle – dealing with the nitrogen Protein turnover Ubiquitin Feeding the Urea Cycle Activation-E1 Glucose-Alanine Cycle Conjugation-E2 Free Ammonia Ligation-E3 Proteosome Glutamine Amino-Acid Degradation Glutamate dehydrogenase Ammonia Overall energetics free Dealing with the carbon transamination-mechanism to know Seven Families Urea Cycle – dealing with the nitrogen 1. ADENQ 5 Steps 2. RPH Carbamoyl-phosphate synthetase oxidase Ornithine transcarbamylase one-carbon metabolism Arginino-succinate synthetase THF Arginino-succinase SAM Arginase 3. GSC Energetics PLP uses Urea Bi-cycle 4. MT – one carbon metabolism 5. FY – oxidases Amino Acid Catabolism: Urea Cycle The Urea Bi-Cycle Two issues: 1) What to do with the fumarate? 2) What are the sources of the free ammonia? a-ketoglutarate a-amino acid Aspartate transaminase transaminase a-keto acid Glutamate 1 Amino Acid Catabolism: Urea Cycle The Glucose-Alanine Cycle • Vigorously working muscles operate nearly anaerobically and rely on glycolysis for energy. a-Keto acids • Glycolysis yields pyruvate. – If not eliminated (converted to acetyl- CoA), lactic acid will build up. • If amino acids have become a fuel source, this lactate is converted back to pyruvate, then converted to alanine for transport into the liver. Excess Glutamate is Metabolized in the Mitochondria of Hepatocytes Amino Acid Catabolism: Urea Cycle Excess glutamine is processed in the intestines, kidneys, and liver. (deaminating) (N,Q,H,S,T,G,M,W) OAA à Asp Glutamine Synthetase This costs another ATP, bringing it closer to 5 (N,Q,H,S,T,G,M,W) 29 N 2 Amino Acid Catabolism: Urea Cycle Excess glutamine is processed in the intestines, kidneys, and liver.
    [Show full text]