Rapid NH System Rapid Spot Indole Reagent (R8309002, Supplied Separately) • When Using the 1-Hour Procedure, Only Selective Notes: (15 Ml/Bottle) Agars Can Be Used
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Identification by 16S Ribosomal RNA Gene Sequencing of Arcobacter
182 ORIGINAL ARTICLE Identification by 16S ribosomal RNA gene sequencing of Mol Path: first published as 10.1136/mp.55.3.182 on 1 June 2002. Downloaded from Arcobacter butzleri bacteraemia in a patient with acute gangrenous appendicitis SKPLau,PCYWoo,JLLTeng, K W Leung, K Y Yuen ............................................................................................................................. J Clin Pathol: Mol Pathol 2002;55:182–185 Aims: To identify a strain of Gram negative facultative anaerobic curved bacillus, concomitantly iso- lated with Escherichia coli and Streptococcus milleri, from the blood culture of a 69 year old woman with acute gangrenous appendicitis. The literature on arcobacter bacteraemia and arcobacter infections associated with appendicitis was reviewed. Methods: The isolate was phenotypically investigated by standard biochemical methods using conventional biochemical tests. Genotypically, the 16S ribosomal RNA (rRNA) gene of the bacterium was amplified by the polymerase chain reaction (PCR) and sequenced. The sequence of the PCR prod- uct was compared with known 16S rRNA gene sequences in the GenBank by multiple sequence align- ment. Literature review was performed by MEDLINE search (1966–2000). Results: The bacterium grew on blood agar, chocolate agar, and MacConkey agar to sizes of 1 mm in diameter after 24 hours of incubation at 37°C in 5% CO2. It grew at 15°C, 25°C, and 37°C; it also grew in a microaerophilic environment, and was cytochrome oxidase positive and motile, typically a member of the genus arcobacter. Furthermore, phenotypic testing showed that the biochemical profile See end of article for of the isolate did not fit into the pattern of any of the known arcobacter species. -
Bacterial Diversity Within the Human Subgingival Crevice
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln U.S. Department of Veterans Affairs Staff Publications U.S. Department of Veterans Affairs 12-7-1999 Bacterial diversity within the human subgingival crevice Ian Kroes Stanford University School of Medicine Paul W. Lepp Stanford University School of Medicine, [email protected] David A. Relman Stanford University School of Medicine, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/veterans Kroes, Ian; Lepp, Paul W.; and Relman, David A., "Bacterial diversity within the human subgingival crevice" (1999). U.S. Department of Veterans Affairs Staff Publications. 18. https://digitalcommons.unl.edu/veterans/18 This Article is brought to you for free and open access by the U.S. Department of Veterans Affairs at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in U.S. Department of Veterans Affairs Staff Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Bacterialdiversity within the human subgingivalcrevice Ian Kroes, Paul W. Lepp, and David A. Relman* Departmentsof Microbiologyand Immunology,and Medicine,Stanford University School of Medicine,Stanford, CA 94305, and VeteransAffairs Palo Alto HealthCare System, Palo Alto,CA 94304 Editedby Stanley Falkow, Stanford University, Stanford, CA, and approvedOctober 15, 1999(received for review August 2, 1999) Molecular, sequence-based environmental surveys of microorgan- associated with disease (9-11). However, a directcomparison isms have revealed a large degree of previously uncharacterized between cultivation-dependentand -independentmethods has diversity. However, nearly all studies of the human endogenous not been described. In this study,we characterizedbacterial bacterial flora have relied on cultivation and biochemical charac- diversitywithin a specimenfrom the humansubgingival crevice terization of the resident organisms. -
Haemophilus] Haemoglobinophilus As Canicola Haemoglobinophilus Gen
Scotland's Rural College Reclassification of [Haemophilus] haemoglobinophilus as Canicola haemoglobinophilus gen. nov., comb. nov. including Bisgaard taxon 35 Christensen, Henrik; Kuhnert, Peter; Foster, Geoffrey; Bisgaard, Magne Published in: International Journal of Systematic and Evolutionary Microbiology DOI: 10.1099/ijsem.0.004881 First published: 15/07/2021 Document Version Peer reviewed version Link to publication Citation for pulished version (APA): Christensen, H., Kuhnert, P., Foster, G., & Bisgaard, M. (2021). Reclassification of [Haemophilus] haemoglobinophilus as Canicola haemoglobinophilus gen. nov., comb. nov. including Bisgaard taxon 35. International Journal of Systematic and Evolutionary Microbiology, 71(7), [004881]. https://doi.org/10.1099/ijsem.0.004881 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal ? Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Download date: 27. Sep. 2021 1 Supplemetary material for the paper: 2 Reclassification of [Haemophilus] haemoglobinophilus as Canicola haemoglobinophilus 3 gen. nov., comb. nov. including Bisgaard taxon 35 4 By Henrik Christensen, Peter Kuhnert, Geoff Foster and Magne Bisgaard 5 1 Table S1. -
Actinomyces Naeslundii and Aggregatibacter Aphrophilus Brain Abscess in an Adolescent
Arch Clin Med Case Rep 2019; 3 (6): 409-413 DOI: 10.26502/acmcr.96550112 Case Report Actinomyces Naeslundii and Aggregatibacter Aphrophilus Brain Abscess in an Adolescent Michael Croix1, Christopher Schwarz2, Ryan Breuer3,4, Amanda B. Hassinger3,4, Kunal Chadha5, Mark Daniel Hicar4,6 1Division of Internal Medicine and Pediatrics, University at Buffalo. Buffalo, New York, USA 2Division of Emergency Medicine, University at Buffalo. Buffalo, New York, USA 3Division of Pediatric Critical Care, John R. Oishei Children’s Hospital. Buffalo, New York, USA 4Department of Pediatrics, University at Buffalo. Buffalo, New York, USA 5Division of Pediatric Emergency Medicine, University at Buffalo. Buffalo, New York, USA 6Division of Pediatric Infectious Diseases, University at Buffalo. Buffalo, New York, USA *Corresponding Authors: Dr. Mark Daniel Hicar, Department of Pediatrics, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, 1001 Main Street, Buffalo, NY, 14203 USA, Tel: (716) 323-0150; Fax: (716) 888-3804; E-mail: [email protected] (or) [email protected] Dr. Michael Croix, Division of Internal Medicine and Pediatrics, 300 Linwood Ave, Buffalo, NY, 14209 USA, Tel: (217) 840-5750; Fax: (716) 888-3804; E-mail: [email protected] Received: 20 July 2019; Accepted: 02 August 2019; Published: 04 November 2019 Abstract We report the case of a child with a brain abscess from which Actinomyces naeslundii and Aggregatibacter aphrophilus were isolated. The is the first case describing A. naeslundii causing a brain abscess. This case highlights the association of these two organisms which may affect antibiotic choice and therapy length. Keywords: Brain; Abscess; Actinomyces; Aggregatibacter 1. Case Report A 13 year old male with no known past medical history initially presented to the Emergency Department with one week of headache, nausea, and vomiting. -
Bacteriology
SECTION 1 High Yield Microbiology 1 Bacteriology MORGAN A. PENCE Definitions Obligate/strict anaerobe: an organism that grows only in the absence of oxygen (e.g., Bacteroides fragilis). Spirochete Aerobe: an organism that lives and grows in the presence : spiral-shaped bacterium; neither gram-positive of oxygen. nor gram-negative. Aerotolerant anaerobe: an organism that shows signifi- cantly better growth in the absence of oxygen but may Gram Stain show limited growth in the presence of oxygen (e.g., • Principal stain used in bacteriology. Clostridium tertium, many Actinomyces spp.). • Distinguishes gram-positive bacteria from gram-negative Anaerobe : an organism that can live in the absence of oxy- bacteria. gen. Bacillus/bacilli: rod-shaped bacteria (e.g., gram-negative Method bacilli); not to be confused with the genus Bacillus. • A portion of a specimen or bacterial growth is applied to Coccus/cocci: spherical/round bacteria. a slide and dried. Coryneform: “club-shaped” or resembling Chinese letters; • Specimen is fixed to slide by methanol (preferred) or heat description of a Gram stain morphology consistent with (can distort morphology). Corynebacterium and related genera. • Crystal violet is added to the slide. Diphtheroid: clinical microbiology-speak for coryneform • Iodine is added and forms a complex with crystal violet gram-positive rods (Corynebacterium and related genera). that binds to the thick peptidoglycan layer of gram-posi- Gram-negative: bacteria that do not retain the purple color tive cell walls. of the crystal violet in the Gram stain due to the presence • Acetone-alcohol solution is added, which washes away of a thin peptidoglycan cell wall; gram-negative bacteria the crystal violet–iodine complexes in gram-negative appear pink due to the safranin counter stain. -
Phylogenomic and Molecular Demarcation of the Core Members of the Polyphyletic Pasteurellaceae Genera Actinobacillus, Haemophilus,Andpasteurella
Hindawi Publishing Corporation International Journal of Genomics Volume 2015, Article ID 198560, 15 pages http://dx.doi.org/10.1155/2015/198560 Research Article Phylogenomic and Molecular Demarcation of the Core Members of the Polyphyletic Pasteurellaceae Genera Actinobacillus, Haemophilus,andPasteurella Sohail Naushad, Mobolaji Adeolu, Nisha Goel, Bijendra Khadka, Aqeel Al-Dahwi, and Radhey S. Gupta Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, ON, Canada L8N 3Z5 Correspondence should be addressed to Radhey S. Gupta; [email protected] Received 5 November 2014; Revised 19 January 2015; Accepted 26 January 2015 Academic Editor: John Parkinson Copyright © 2015 Sohail Naushad et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The genera Actinobacillus, Haemophilus, and Pasteurella exhibit extensive polyphyletic branching in phylogenetic trees and do not represent coherent clusters of species. In this study, we have utilized molecular signatures identified through comparative genomic analyses in conjunction with genome based and multilocus sequence based phylogenetic analyses to clarify the phylogenetic and taxonomic boundary of these genera. We have identified large clusters of Actinobacillus, Haemophilus, and Pasteurella species which represent the “sensu stricto” members of these genera. We have identified 3, 7, and 6 conserved signature indels (CSIs), which are specifically shared by sensu stricto members of Actinobacillus, Haemophilus, and Pasteurella, respectively. We have also identified two different sets of CSIs that are unique characteristics of the pathogen containing genera Aggregatibacter and Mannheimia, respectively. It is now possible to demarcate the genera Actinobacillus sensu stricto, Haemophilus sensu stricto, and Pasteurella sensu stricto on the basis of discrete molecular signatures. -
Laboratory Methods for the Diagnosis of Meningitis Caused by Neisseria Meningitidis, Streptococcus Pneumoniae, and Haemophilus Influenzae WHO Manual, 2Nd Edition
WHO/IVB.11.09 Laboratory Methods for the Diagnosis of Meningitis caused by Neisseria meningitidis, Streptococcus pneumoniae, and Haemophilus influenzae WHO MANUAL, 2ND EDITION Photo: Jon Shadid/UNICEF WHO/IVB.11.09 Laboratory Methods for the Diagnosis of Meningitis caused by Neisseria meningitidis, Streptococcus pneumoniae, and Haemophilus influenzae WHO MANUAL, 2ND EDITION1 1 The first edition has the WHO reference WHO/CDS/CSR/EDC/99.7: Laboratory Methods for the Diagnosis of Meningitis caused by Neisseria meningitidis, Streptococcus pneumoniae, and Haemophilus influenzae, http://whqlibdoc.who.int/hq/1999/WHO_CDS_CSR_EDC_99.7.pdf © World Health Organization 2011 This document is not a formal publication of the World Health Organization. All rights reserved. This document may, however, be reviewed, abstracted, reproduced and translated, in part or in whole, but not for sale or for use in conjunction with commercial purposes. The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. The mention of specific companies or of certain manufacturers’ products does not imply that they are endorsed or recommended by the World Health Organization in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. All reasonable precautions have been taken by the World Health Organization to verify the information contained in this publication. -
Amended Description of Haemophilus Segnis Kilian 1977
INTERNATIONALJOURNAL OF SYSTEMATICBACTERIOLOGY, July 1978, p. 411-415 Vol. 28, No. 3 0020-7713/78/0028-0411$02.00/0 Copyright 0 1978 International Association of Microbiological Societies Printed in U.S. A. Amended Description of Haemophilus segnis Kilian 1977 M. KILIAN AND J. THEILADE Departments of Microbiology and Electron Microscopy, Royal Dental College, Aarhus, Denmark A detailed amended description of Haemophilus segnis Kilian 1977 based on an examination of 22 strains, including the type strain, is presented. Included is information on ultrastructural characteristics, biochemical activities, fermenta- tion end products, and deoxyribonucleic acid base composition. In a recent taxonomic study of 426 Haemo- The sections were poststained with uranyl magnesium philus strains from human and animal origin, 17 acetate (1) and lead citrate (10) and examined in a strains isolated primarily from human saliva and Philips EM 200 or EM 301 electron microscope at 60 dental plaque formed a separate group on the kV. basis of their biochemical and other character- Determination of fermentation products. Anal- yses of glucose fermentation products were performed istics. The cell morphology, Gram reaction, re- in a Hewlett-Packard gas chromatograph model 5830A quirement for the V-factor (nicotinamide ade- (Wurtenberg, Germany). The conditions of analysis nine dinucleotide), and the ability to reduce were: hydrogen flame detector; oven temperature, nitrate confinned its inclusion in the genus Hae- 130°C; coiled glass column (1.8 m by 4 mm inner mophilus. The distinguishing characteristics of diameter) packed with 80- to 100-mesh Chromosorb this taxon, i.e., its feeble biochemical activity G, AW, DMCS (Johns-Manville, Denver, Colo.); sta- and the relatively high guanine-plus-cytosine tionary phase, 5% FFAP (Jydsk Teknologisk Institut, (G+C) content of its deoxyribonucleic acid Aarhus, Denmark); and nitrogen flow rate, 60 ml/min. -
The First Known Case of Liver Abscess Caused by Aggregatibacter Aphrophilus in Japan
doi: 10.2169/internalmedicine.4220-19 Intern Med Advance Publication http://internmed.jp 【 CASE REPORT 】 The First Known Case of Liver Abscess Caused by Aggregatibacter aphrophilus in Japan Taiki Okumura 1, Keisuke Soya 2,YuHihara1, Shinji Muraoka 3, Yoshihiro Nishimura 3, Katsuaki Inoue 1, Atsushi Maruyama 1 and Go Matsumoto 4 Abstract: A 48-year-old man presented with a sustained fever. Abdominal computed tomography revealed multilocu- lar liver abscesses. He underwent percutaneous needle aspiration, yielding straw-colored pus. Gram staining revealed Gram-negative coccobacilli. The organism grew only on chocolate II agar in a 7% carbon dioxide atmosphere. Identification of Aggregatibacter aphrophilus was confirmed using mass spectrometry and 16S rRNA gene sequencing. He was successfully treated with antibiotics. Liver abscess caused by A. aphrophilus is extremely rare. We herein report the first such case in Japan. Even fastidious organisms, such as A. aphro- philus, should be correctly identified using mass spectrometry or 16S rRNA gene sequencing for adequate treatment. Key words: Aggregatibacter aphrophilus, liver abscess, mass spectrometry (Intern Med Advance Publication) (DOI: 10.2169/internalmedicine.4220-19) reported in Japan. We herein report the details of the case Introduction and discuss the methods for the accurate identification of A. aphrophilus, including mass spectrometry and 16S rRNA Aggregatibacter aphrophilus is a species of Gram- gene sequencing. negative coccobacilli formerly belonging to the genus Hae- mophilus (1, 2). It is a slow-growing, aerobic, non-motile Case Report bacillus (3, 4) and a commensal organism of the human oral cavity and pharynx, belonging to the HACEK group, which A 48-year-old man presented to our hospital with a 5-day includes Haemophilus species, Aggregatibacter species, Car- history of a fever of 39.0℃. -
Appendix 1. Validly Published Names, Conserved and Rejected Names, And
Appendix 1. Validly published names, conserved and rejected names, and taxonomic opinions cited in the International Journal of Systematic and Evolutionary Microbiology since publication of Volume 2 of the Second Edition of the Systematics* JEAN P. EUZÉBY New phyla Alteromonadales Bowman and McMeekin 2005, 2235VP – Valid publication: Validation List no. 106 – Effective publication: Names above the rank of class are not covered by the Rules of Bowman and McMeekin (2005) the Bacteriological Code (1990 Revision), and the names of phyla are not to be regarded as having been validly published. These Anaerolineales Yamada et al. 2006, 1338VP names are listed for completeness. Bdellovibrionales Garrity et al. 2006, 1VP – Valid publication: Lentisphaerae Cho et al. 2004 – Valid publication: Validation List Validation List no. 107 – Effective publication: Garrity et al. no. 98 – Effective publication: J.C. Cho et al. (2004) (2005xxxvi) Proteobacteria Garrity et al. 2005 – Valid publication: Validation Burkholderiales Garrity et al. 2006, 1VP – Valid publication: Vali- List no. 106 – Effective publication: Garrity et al. (2005i) dation List no. 107 – Effective publication: Garrity et al. (2005xxiii) New classes Caldilineales Yamada et al. 2006, 1339VP VP Alphaproteobacteria Garrity et al. 2006, 1 – Valid publication: Campylobacterales Garrity et al. 2006, 1VP – Valid publication: Validation List no. 107 – Effective publication: Garrity et al. Validation List no. 107 – Effective publication: Garrity et al. (2005xv) (2005xxxixi) VP Anaerolineae Yamada et al. 2006, 1336 Cardiobacteriales Garrity et al. 2005, 2235VP – Valid publica- Betaproteobacteria Garrity et al. 2006, 1VP – Valid publication: tion: Validation List no. 106 – Effective publication: Garrity Validation List no. 107 – Effective publication: Garrity et al. -
Microbial Source Tracking in Coastal Recreational Waters of Southern Maine
University of New Hampshire University of New Hampshire Scholars' Repository Master's Theses and Capstones Student Scholarship Fall 2017 MICROBIAL SOURCE TRACKING IN COASTAL RECREATIONAL WATERS OF SOUTHERN MAINE: RELATIONSHIPS BETWEEN ENTEROCOCCI, ENVIRONMENTAL FACTORS, POTENTIAL PATHOGENS, AND FECAL SOURCES Derek Rothenheber University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/thesis Recommended Citation Rothenheber, Derek, "MICROBIAL SOURCE TRACKING IN COASTAL RECREATIONAL WATERS OF SOUTHERN MAINE: RELATIONSHIPS BETWEEN ENTEROCOCCI, ENVIRONMENTAL FACTORS, POTENTIAL PATHOGENS, AND FECAL SOURCES" (2017). Master's Theses and Capstones. 1133. https://scholars.unh.edu/thesis/1133 This Thesis is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Master's Theses and Capstones by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. MICROBIAL SOURCE TRACKING IN COASTAL RECREATIONAL WATERS OF SOUTHERN MAINE: RELATIONSHIPS BETWEEN ENTEROCOCCI, ENVIRONMENTAL FACTORS, POTENTIAL PATHOGENS, AND FECAL SOURCES BY DEREK ROTHENHEBER Microbiology BS, University of Maine, 2013 THESIS Submitted to the University of New Hampshire In Partial Fulfillment of the Requirements for the Degree of Master of Science in Microbiology September, 2017 This thesis has been examined and approved in partial fulfillment of the -
A Conserved Inner Membrane Protein of Aggregatibacter Actinomycetemcomitans Is Integral for Membrane Function Kenneth Smith University of Vermont
University of Vermont ScholarWorks @ UVM Graduate College Dissertations and Theses Dissertations and Theses 2015 A conserved Inner Membrane Protein of Aggregatibacter actinomycetemcomitans is integral for membrane function Kenneth Smith University of Vermont Follow this and additional works at: https://scholarworks.uvm.edu/graddis Part of the Microbiology Commons Recommended Citation Smith, Kenneth, "A conserved Inner Membrane Protein of Aggregatibacter actinomycetemcomitans is integral for membrane function" (2015). Graduate College Dissertations and Theses. 417. https://scholarworks.uvm.edu/graddis/417 This Dissertation is brought to you for free and open access by the Dissertations and Theses at ScholarWorks @ UVM. It has been accepted for inclusion in Graduate College Dissertations and Theses by an authorized administrator of ScholarWorks @ UVM. For more information, please contact [email protected]. A CONSERVED INNER MEMBRANE PROTEIN OF AGGREGATIBACTER ACTINOMYCETEMCOMITANS IS INTEGRAL FOR MEMBRANE FUNCTION A Dissertation Presented by Kenneth P. Smith to The Faculty of the Graduate College of The University of Vermont In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Specializing in Microbiology and Molecular Genetics October, 2015 Defense Date: June 15, 2015 Dissertation Examination Committee: Keith P. Mintz, Ph.D., Advisor Teresa Ruiz, Ph.D., Chairperson John M. Burke, Ph.D. Aimee Shen, Ph.D. Matthew J. Wargo, Ph.D. Cynthia J. Forehand, Ph.D., Dean of the Graduate College ABSTRACT The cell envelope of Aggregatibacter actinomycetemcomitans, a Gram-negative pathogenic bacterium implicated in human oral and systemic disease, plays a critical role in maintenance of cellular homeostasis, resistance to external stress, and host–pathogen interactions. Our laboratory has identified a novel gene product, morphogenesis protein C (MorC), deletion of which leads to multiple pleotropic effects pertaining to membrane structure and function.