Appendix 1. Validly published names, conserved and rejected names, and taxonomic opinions cited in the International Journal of Systematic and Evolutionary Microbiology since publication of Volume 2 of the Second Edition of the Systematics*

JEAN P. EUZÉBY

New phyla Alteromonadales Bowman and McMeekin 2005, 2235VP – Valid publication: Validation List no. 106 – Effective publication: Names above the rank of class are not covered by the Rules of Bowman and McMeekin (2005) the Bacteriological Code (1990 Revision), and the names of phyla are not to be regarded as having been validly published. These Anaerolineales Yamada et al. 2006, 1338VP names are listed for completeness. Bdellovibrionales Garrity et al. 2006, 1VP – Valid publication: Lentisphaerae Cho et al. 2004 – Valid publication: Validation List Validation List no. 107 – Effective publication: Garrity et al. no. 98 – Effective publication: J.C. Cho et al. (2004) (2005xxxvi) Proteobacteria Garrity et al. 2005 – Valid publication: Validation Burkholderiales Garrity et al. 2006, 1VP – Valid publication: Vali- List no. 106 – Effective publication: Garrity et al. (2005i) dation List no. 107 – Effective publication: Garrity et al. (2005xxiii) New classes Caldilineales Yamada et al. 2006, 1339VP VP Alphaproteobacteria Garrity et al. 2006, 1 – Valid publication: Campylobacterales Garrity et al. 2006, 1VP – Valid publication: Validation List no. 107 – Effective publication: Garrity et al. Validation List no. 107 – Effective publication: Garrity et al. (2005xv) (2005xxxixi) VP Anaerolineae Yamada et al. 2006, 1336 Cardiobacteriales Garrity et al. 2005, 2235VP – Valid publica- Betaproteobacteria Garrity et al. 2006, 1VP – Valid publication: tion: Validation List no. 106 – Effective publication: Garrity Validation List no. 107 – Effective publication: Garrity et al. et al. (2005vi) (2005xxii) Chromatiales Imhoff 2005, 2235VP – Valid publication: Validation Caldilineae Yamada et al. 2006, 1339VP List no. 106 – Effective publication: Imhoff (2005) Deltaproteobacteria Kuever et al. 2006, 1VP – Valid publication: Desulfarculales corrig. Kuever et al. 2006, 1VP – Valid publica- Validation List no. 107 – Effective publication: Kuever et al. tion: Validation List no. 107 – Effective publication: Kuever (2005a) et al. (2005o) Epsilonproteobacteria Garrity et al. 2006, 2VP – Valid publication: Desulfobacterales Kuever et al. 2006, 2VP – Valid publication: Valida- Validation List no. 107 – Effective publication: Garrity et al. tion List no. 107 – Effective publication: Kuever et al. (2005j) (2005xxxviii) Desulfovibrionales Kuever et al. 2006, 2VP – Valid publication: Gammaproteobacteria Garrity et al. 2005, 2236VP – Valid publica- Validation List no. 107 – Effective publication: Kuever et al. tion: Validation List no. 106 – Effective publication: Garrity (2005d) et al. (2005ii) Desulfurellales Kuever et al. 2006, 2VP – Valid publication: Valida- Ktedonobacteria corrig. Cavaletti et al. 2007, 433VP – Valid publi- tion List no. 107 – Effective publication: Kuever et al. (2005b) cation: Validation List no. 114 – Effective publication: Caval- Desulfuromonadales corrig. Kuever et al. 2006, 2VP – Valid publica- etti et al. (2006b) tion: Validation List no. 107 – Effective publication: Kuever Thermolithobacteria Sokolova et al. 2007, 1372VP – Valid publica- et al. (2005r) tion: Validation List no. 116 – Effective publication: Sokolova Hydrogenophilales Garrity et al. 2006, 2VP – Valid publication: et al. (2007) Validation List no. 107 – Effective publication: Garrity et al. Opitutae Choo et al. 2007, 535VP (2005xxvi) New orders Kordiimonadales K.K. Kwon et al. 2005, 2036VP VP Acidithiobacillales Garrity et al. 2005, 2235VP – Valid publica- Ktedonobacterales corrig. Cavaletti et al. 2007, 433 – Valid pub- tion: Validation List no. 106 – Effective publication: Garrity lication: Validation List no. 114 – Effective publication: Cav- et al. (2005iii) aletti et al. (2006b) VP Aeromonadales Martin-Carnahan and Joseph 2005, 2235VP – Valid Legionellales Garrity et al. 2005, 2236 – Valid publication: Valida- publication: Validation List no. 106 – Effective publication: tion List no. 106 – Effective publication: Garrity et al. (2005ix) Martin-Carnahan and Joseph (2005) Lentisphaerales Cho et al. 2004, 1005VP – Valid publication: Valida- tion List no. 98 – Effective publication: J.C. Cho et al. (2004) Methylococcales Bowman 2005, 2236VP – Valid publication: Valida- tion List no. 106 – Effective publication: Bowman (2005b) * Citations for the original authorities for basonyms, synonyms, and emendations Methylophilales Garrity et al. 2006, 2VP – Valid publication: Vali- do not appear in the bibliography unless cited elsewhere in this book. References for Validation Lists and Lists of Changes in Taxonomic Opinion are provided at dation List no. 107 – Effective publication: Garrity et al. the end of the chapter. (2005xxviii)

1319 1320 APPENDIX 1

Natranaerobiales Mesbah et al. 2007, 2511VP New families Nautiliales Miroshnichenko et al. 2004, 43VP Acidithiobacillaceae Garrity et al. 2005, 2235VP – Valid publication: Val- Neisseriales Tønjum 2006, 2VP – Valid publication: Validation List idation List no. 106 – Effective publication: Garrity et al. (2005iv) no. 107 – Effective publication: Tønjum (2005) Actinospicaceae Cavaletti et al. 2006a, 1751VP Nitrosomonadales Garrity et al. 2006, 2VP – Valid publication: Alcanivoracaceae corrig. Golyshin et al. 2005, 2235VP – Valid pub- Validation List no. 107 – Effective publication: Garrity et al. lication: Validation List no. 106 – Effective publication: Goly- (2005xxx) shin et al. (2005) Oceanospirillales Garrity et al. 2005, 2236VP – Valid publica- Anaerolineaceae Yamada et al. 2006, 1338VP tion: Validation List no. 106 – Effective publication: Garrity Bacteriovoracaceae Davidov and Jurkevitch 2004, 1450VP et al. (2005xi) Bdellovibrionaceae Garrity et al. 2006, 1VP – Valid publication: Opitutales Choo et al. 2007, 536VP Validation List no. 107 – Effective publication: Garrity et al. Pasteurellales Garrity et al. 2005, 2236VP – Valid publication: (2005xxxvii) Validation List no. 106 – Effective publication: Garrity et al. According to Rule 51b(1), the family name Bdellovibrionaceae (2005xiv) Garrity et al. 2006 is illegitimate. Puniceicoccales Choo et al. 2007, 536VP Beijerinckiaceae Garrity et al. 2006, 1VP – Valid publication: Vali- Rhizobiales Kuykendall 2006, 3VP – Valid publication: Validation dation List no. 107 – Effective publication: Garrity et al. List no. 107 – Effective publication: Kuykendall (2005) (2005xviii) According to Rule 51b(1), the order name Rhizobiales Kuyk- Bradyrhizobiaceae Garrity et al. 2006, 1VP – Valid publication: endall 2006 is illegitimate. Validation List no. 107 – Effective publication: Garrity et al. Rhodobacterales Garrity et al. 2006, 3VP – Valid publication: Vali- (2005xix) dation List no. 107 – Effective publication: Garrity et al. According to Rule 51b(1), the family name Bradyrhizobiaceae (2005xvi) Garrity et al. 2006 is illegitimate. Rhodocyclales Garrity et al. 2006, 3VP – Valid publication: Vali- Burkholderiaceae Garrity et al. 2006, 1VP – Valid publication: dation List no. 107 – Effective publication: Garrity et al. Validation List no. 107 – Effective publication: Garrity et al. (2005xxxii) (2005xxiv) Sphingomonadales Yabuuchi and Kosako 2006, 3VP – Valid publica- Caldilineaceae Yamada et al. 2006, 1339VP tion: Validation List no. 107 – Effective publication: Yabuuchi Catenulisporaceae Busti et al. 2006, 1745VP and Kosako (2005) Colwelliaceae Ivanova et al. 2004d, 1785VP Syntrophobacterales Kuever et al. 2006, 3VP – Valid publication: VP Validation List no. 107 – Effective publication: Kuever et al. Conexibacteraceae Stackebrandt 2005, 547 – Valid publication: (2005t) Validation List no. 102 – Effective publication: Stackebrandt (2004) Thermolithobacterales Sokolova et al. 2007, 1372VP – Valid publica- VP tion: Validation List no. 116 – Effective publication: Sokolova Coxiellaceae Garrity et al. 2005, 2235 – Valid publication: Val- et al. (2007) idation List no. 106 – Effective publication: Garrity et al. (2005x) Thiotrichales Garrity et al. 2005, 2236VP – Valid publication: VP Validation List no. 106 – Effective publication: Garrity et al. Desulfarculaceae Kuever et al. 2006, 1 – Valid publication: (2005vii) Validation List no. 107 – Effective publication: Kuever et al. (2005p) Victivallales Cho et al. 2004, 1005VP – Valid publication: Valida- VP tion List no. 98 – Effective publication: J.C. Cho et al. (2004) Desulfobacteraceae Kuever et al. 2006, 2 – Valid publication: Validation List no. 107 – Effective publication: Kuever et al. Xanthomonadales Saddler and Bradbury 2005, 2236VP – Valid (2005k) publication: Validation List no. 106 – Effective publication: VP Saddler and Bradbury (2005a) Desulfobulbaceae Kuever et al. 2006, 2 – Valid publication: Valida- tion List no. 107 – Effective publication: Kuever et al. (2005n) New suborders Desulfohalobiaceae Kuever et al. 2006, 2VP – Valid publication: Catenulisporineae Cavaletti et al. 2006a, 1751VP Validation List no. 107 – Effective publication: Kuever et al. Cystobacterineae Reichenbach 2007, 894VP – Valid publication: (2005g) Validation List no. 115 – Effective publication: Reichenbach Desulfomicrobiaceae Kuever et al. 2006, 2VP – Valid publication: Vali- (2005a) dation List no. 107 – Effective publication: Kuever et al. (2005f) Nannocystineae Reichenbach 2007, 894VP – Valid publication: Desulfonatronaceae corrig. Kuever et al. 2006, 2VP – Valid publica- Validation List no. 115 – Effective publication: Reichenbach tion: Validation List no. 107 – Effective publication: Kuever (2005a) et al. (2005i) Sorangiineae corrig. Reichenbach 2007, 894VP – Valid publica- Desulfovibrionaceae Kuever et al. 2006, 2VP – Valid publication: tion: Validation List no. 115 – Effective publication: Reichen- Validation List no. 107 – Effective publication: Kuever et al. bach (2005a) (2005e) APPENDIX 1 1321

Desulfurellaceae Kuever et al. 2006, 2VP – Valid publication: Vali- Nannocystaceae Reichenbach 2006, 2VP – Valid publication: Valida- dation List no. 107 – Effective publication: Kuever et al. tion List no. 107 – Effective publication: Reichenbach (2005j) (2005c) Natranaerobiaceae Mesbah et al. 2007, 2511VP VP Desulfurobacteriaceae L’Haridon et al. 2006, 2850 Nautiliaceae Miroshnichenko et al. 2004, 44VP VP Desulfuromonadaceae corrig. Kuever et al. 2006, 2 – Valid publi- Nitrosomonadaceae Garrity et al. 2006, 2VP – Valid publication: Valida- cation: Validation List no. 107 – Effective publication: Kuever tion List no. 107 – Effective publication: Garrity et al. (2005xxxi) et al. (2005s) Nitrospinaceae Garrity et al. 2006, 3VP – Valid publication: Validation VP Erysipelotrichaceae Verbarg et al. 2004, 223 List no. 107 – Effective publication: Garrity et al. (2005xxxiv) VP Erythrobacteraceae K.B. Lee et al. 2005, 1916 Oceanospirillaceae Garrity et al. 2005, 2236VP – Valid publication: Ferrimonadaceae Ivanova et al. 2004d, 1785VP Validation List no. 106 – Effective publication: Garrity et al. Francisellaceae Sjöstedt 2005, 2236VP – Valid publication: Valida- (2005xii) tion List no. 106 – Effective publication: Sjöstedt (2005) Opitutaceae Choo et al. 2007, 536VP Geobacteraceae Garrity et al. 2006, 2VP – Valid publication: Vali- Oxalobacteraceae Garrity et al. 2006, 3VP – Valid publication: dation List no. 107 – Effective publication: Garrity et al. Validation List no. 107 – Effective publication: Garrity et al. (2005xxxv) (2005xxv) According to Rule 24b(2), Geobacteraceae Holmes et al. 2004a Patulibacteraceae Y. Takahashi et al. 2006, 405VP has priority. Phyllobacteriaceae Mergaert and Swings 2006, 3VP – Valid publica- Geobacteraceae Holmes et al. 2004a, 1597VP tion: Validation List no. 107 – Effective publication: Mergaert Geodermatophilaceae Normand 2006, 2277VP and Swings (2005) Hahellaceae Garrity et al. 2005, 2236VP – Valid publication: Vali- Piscirickettsiaceae Fryer and Lannan 2005, 2236VP – Valid publica- dation List no. 106 – Effective publication: Garrity et al. tion: Validation List no. 106 – Effective publication: Fryer and (2005xiii) Lannan (2005) Halothiobacillaceae Kelly and Wood 2005, 2236VP – Valid publica- Pseudoalteromonadaceae Ivanova et al. 2004d, 1784VP tion: Validation List no. 106 – Effective publication: Kelly and Psychromonadaceae Ivanova et al. 2004d, 1785VP Wood (2005a) Puniceicoccaceae Choo et al. 2007, 536VP VP Helicobacteraceae Garrity et al. 2006, 2 – Valid publication: Valida- Rhodobacteraceae Garrity et al. 2006, 3VP – Valid publication: tion List no. 107 – Effective publication: Garrity et al. (2005xl) Validation List no. 107 – Effective publication: Garrity et al. Holosporaceae Görtz and Schmidt 2006, 2VP – Valid publication: (2005xvii) Validation List no. 107 – Effective publication: Görtz and According to Rule 51b(1), the family name Rhodobacteraceae Schmidt (2005) Garrity et al. 2006 is illegitimate. Hydrogenophilaceae Garrity et al. 2006, 2VP – Valid publication: Rhodobiaceae Garrity et al. 2006, 3VP – Valid publication: Vali- Validation List no. 107 – Effective publication: Garrity et al. dation List no. 107 – Effective publication: Garrity et al. (2005xxvii) (2005xxi) Hyphomonadaceae K.B. Lee et al. 2005, 1915VP Rhodocyclaceae Garrity et al. 2006, 3VP – Valid publication: Vali- Idiomarinaceae Ivanova et al. 2004d, 1784VP dation List no. 107 – Effective publication: Garrity et al. Kofleriaceae Reichenbach 2007, 894VP – Valid publication: Valida- (2005xxxiii) tion List no. 115 – Effective publication: Reichenbach (2005l) Segniliparaceae Butler et al. 2005, 1621VP Ktedonobacteraceae corrig. Cavaletti et al. 2007, 433VP – Valid pub- Shewanellaceae Ivanova et al. 2004d, 1784VP lication: Validation List no. 114 – Effective publication: Cav- Solirubrobacteraceae Stackebrandt 2005, 548VP – Valid publication: aletti et al. (2006b) Validation List no. 102 – Effective publication: Stackebrandt Litoricolaceae H. Kim et al. 2007a, 1797VP (2004) VP Methermicoccaceae Cheng et al. 2007, 2968 Syntrophaceae Kuever et al. 2006, 3VP – Valid publication: Vali- Methylobacteriaceae Garrity et al. 2006, 2VP – Valid publication: dation List no. 107 – Effective publication: Kuever et al. Validation List no. 107 – Effective publication: Garrity et al. (2005v) (2005xx) Syntrophobacteraceae Kuever et al. 2006, 3VP – Valid publication: Valida- Methylocystaceae Bowman 2006, 2VP – Valid publication: Valida- tion List no. 107 – Effective publication: Kuever et al. (2005u) tion List no. 107 – Effective publication: Bowman (2005a) Thermithiobacillaceae Garrity et al. 2005, 2236VP – Valid publica- Methylophilaceae Garrity et al. 2006, 2VP – Valid publication: tion: Validation List no. 106 – Effective publication: Garrity Validation List no. 107 – Effective publication: Garrity et al. et al. (2005v) (2005xxix) Thermoactinomycetaceae Matsuo et al. 2006, 2840VP VP Moritellaceae Ivanova et al. 2004d, 1784 Thermodesulfobiaceae Mori et al. 2004, 1VP – Valid publication: Nakamurellaceae Tao et al. 2004, 999VP – Illegitimate synonym: Validation List no. 95 – Effective publication: Mori et al. Microsphaeraceae Rainey et al. 1997 (2003) 1322 APPENDIX 1

Thermoleophilaceae Stackebrandt 2005, 548VP – Valid publication: Altererythrobacter K.K. Kwon et al. 2007, 2210VP Validation List no. 102 – Effective publication: Stackebrandt Aminiphilus Díaz et al. 2007, 1917VP (2004) Anaerofustis Finegold et al. 2004, 1005VP – Valid publication: Valida- VP Thermolithobacteraceae Sokolova et al. 2007, 1372 – Valid pub- tion List no. 98 – Effective publication: Finegold et al. (2004a) lication: Validation List no. 116 – Effective publication: Anaerosporobacter Jeong et al. 2007, 1786VP Sokolova et al. (2007) Anaerotruncus Lawson et al. 2004b, 415VP Thiotrichaceae Garrity et al. 2005, 2236VP – Valid publication: Validation List no. 106 – Effective publication: Garrity et al. Anaerovirgula Pikuta et al. 2006b, 2628VP (2005viii) Anderseniella Brettar et al. 2007, 2403VP Trueperaceae Rainey et al. 2005 (complete authorship reads Andreprevotia Weon et al. 2007f, 1574VP VP Rainey, da Costa and Albuquerque), 1744 – Valid publication: Aquicella Santos et al. 2004, 1VP – Valid publication: Validation Validation List no. 105 – Effective publication: Albuquerque List no. 95 – Effective publication: Santos et al. (2003) et al. (2005) Aquiflexum Brettar et al. 2004, 2339VP Xanthobacteraceae K.B. Lee et al. 2005, 1916VP Aquimarina Nedashkovskaya et al. 2005h, 227VP Xanthomonadaceae Saddler and Bradbury 2005, 2236VP – Valid VP publication: Validation List no. 106 – Effective publication: Aquimonas Saha et al. 2005a, 1493 Saddler and Bradbury (2005b) Aquincola Lechner et al. 2007, 1300VP Yaniaceae W.J. Li et al. 2005e, 1936VP Aquisalimonas Márquez et al. 2007, 1140VP The name Yaniaceae W.J. Li et al. 2005e is illegitimate because Aquitalea H.T. Lau et al. 2006, 870VP the type genus Yania W.J. Li et al. 2004a, 529VP is illegitimate Arcicella Nikitin et al. 2004, 683VP (see below Yania W.J. Li et al. 2004a, 529VP). Arenimonas S.W. Kwon et al. 2007c, 956VP New genera Arsenicicoccus Collins et al. 2004d, 607VP Acaricomes Pukall et al. 2006, 467VP Aspromonas Jin et al. 2007, 1879VP Acetanaerobacterium Chen and Dong 2004, 2261VP Atopococcus Collins et al. 2005, 1695VP Acidicaldus Johnson et al. 2006, 1459VP – Valid publication: Valida- Atopostipes Cotta et al. 2004, 1425VP – Valid publication: Valida- tion List no. 110 – Effective publication: Johnson et al. (2006) tion List no. 99 – Effective publication: Cotta et al. (2004) Actinocatenispora Thawai et al. 2006, 1792VP Aureispira Hosoya et al. 2006, 2933VP Actinospica Cavaletti et al. 2006a, 1751VP Avibacterium Blackall et al. 2005, 359VP Actinotalea Yi et al. 2007b, 155VP Azohydromonas Xie and Yokota 2005f, 2422VP Adhaeribacter Rickard et al. 2005, 827VP Balneimonas corrig. Takeda et al. 2004, 631VP – Valid publica- tion: Validation List no. 97 – Effective publication: Takeda Advenella Coenye et al. 2005, 254VP et al. (2004) Aeriscardovia Simpson et al. 2004, 405VP Balneola Urios et al. 2006, 1886VP Aestuariibacter Yi et al. 2004b, 573VP Barnesiella Sakamoto et al. 2007b, 344VP Aestuariimicrobium Jung et al. 2007b, 2117VP Belliella Brettar et al. 2004, 69VP Agarivorans Kurahashi and Yokota 2004, 695VP Bellilinea Yamada et al. 2007, 2302VP Aggregatibacter Nørskov-Lauritsen and Kilian 2006, 2143VP Belnapia Reddy et al. 2006, 54VP Akkermansia Derrien et al. 2004, 1474VP Bergeriella Xie and Yokota 2005, 1395VP – Valid publication: Vali- VP Algibacter Nedashkovskaya et al. 2004d, 1260 dation List no. 104 – Effective publication: Xie and Yokota Algicola Ivanova et al. 2004d, 1784VP (2005a) Aliivibrio Urbanczyk et al. 2007, 2827VP Bibersteinia Blackall et al. 2007, 672VP Alkalibacillus Jeon et al. 2005b, 1894VP Bizionia Nedashkovskaya et al. 2005g, 377VP Alkalibacter Garnova et al. 2005, 983VP – Valid publication: Valida- Blastopirellula Schlesner et al. 2004, 1578VP tion List no. 103 – Effective publication: Garnova et al. (2004) Bowmanella Jean et al. 2006a, 2465VP VP Alkaliflexus Zhilina et al. 2005, 1395 – Valid publication: Valida- Brooklawnia Rainey et al. 2006 (authorship reads Rainey, da tion List no. 104 – Effective publication: Zhilina et al. (2004) Costa and Moe), 1981VP – Valid publication: H.S. Bae et al. Alkalimonas Ma et al. 2007, 433VP – Valid publication: Validation (2006a) List no. 114 – Effective publication: Y. Ma et al. (2004) Bryantella Wolin et al. 2004, 1VP – Valid publication: Validation Allobaculum Greetham et al. 2006, 1459VP – Valid publication: List no. 95 – Effective publication: Wolin et al. (2003) Validation List no. 110 – Effective publication: Greetham et The name Bryantella Wolin et al. 2004 is illegitimate because it al. (2004b) is a later homonym of Bryantella Chickering, 1946 (Animalia, Alloscardovia Huys et al. 2007, 1445VP Arthropoda, Arachnida, Araneae, Salticidae, Dendryphantinae, APPENDIX 1 1323

Dendryphantini) and a later homonym of Bryantella Britton Desulfopila D. Suzuki et al. 2007a, 524VP 1957 (Animalia, Arthropoda, Scarabaeoidea, Scarabaeidae, Desulfothermus Kuever et al. 2006, 2VP – Valid publication: Valida- Melolonthinae). See Principle 2. tion List no. 107 – Effective publication: Kuever et al. (2005h) VP Byssovorax Reichenbach 2006, 2362 Desulfovermiculus Belyakova et al. 2007, 1371VP – Valid publica- Caenispirillum J.H. Yoon et al. 2007xvi, 1219VP tion: Validation List no. 116 – Effective publication: Belyak- Caldalkalibacillus Xue et al. 2006, 1220VP ova et al. (2006) VP Caldanaerobacter Fardeau et al. 2004, 471VP Desulfovirgula Kaksonen et al. 2007a, 101 VP Castellaniella Kämpfer et al. 2006d, 818VP Desulfurispora Kaksonen et al. 2007b, 1092 VP Catellibacterium Tanaka et al. 2004, 958VP Dethiosulfatibacter Takii et al. 2007, 2324 VP Catellicoccus Lawson et al. 2006, 431VP Dickeya Samson et al. 2005, 1423 VP Catenulispora Busti et al. 2006, 1745VP Dinoroseobacter Biebl et al. 2005a, 1095 VP Cerasibacillus Nakamura et al. 2004, 1067VP Dokdonella J.H. Yoon et al. 2006g, 149 VP Cerasicoccus J. Yoon et al. 2007c, 2070VP Dokdonia J.H. Yoon et al. 2005h, 2326 VP Chimaereicella Tiago et al. 2006, 925VP – Valid publication: Valida- Donghaeana J.H. Yoon et al. 2006b, 190 tion List no. 109 – Effective publication: Tiago et al. (2006a) Donghicola J.H. Yoon et al. 2007xiii, 75VP Chitinibacter Chern et al. 2004, 1390VP Dyella Xie and Yokota 2005c, 756VP Chitinilyticum S. C. Chang et al. 2007, 2858VP Echinicola Nedashkovskaya et al. 2006b, 955VP Chitinimonas S.C. Chang et al. 2004, 1005VP – Valid publication: Ectothiorhodosinus Gorlenko et al. 2007, 1371VP – Valid publica- Validation List no. 98 – Effective publication: S.C. Chang et tion: Validation List no. 116 – Effective publication: Gorlenko al. (2004) et al. (2004a) Citreicella Sorokin et al. 2006, 1VP – Valid publication: Validation Effluviibacter Suresh et al. 2006, 1706VP List no. 107 – Effective publication: Sorokin et al. (2005a) Elizabethkingia K.K. Kim et al. 2005b, 1291VP VP Citreimonas Choi and Cho 2006, 2801 Emticicia Saha and Chakrabarti 2006a, 993VP VP Cloacibacterium Allen et al. 2006, 1314 Endozoicomonas Kurahashi and Yokota 2007, 1371VP – Valid pub- Cohnella Kämpfer et al. 2006g, 784VP lication: Validation List no. 116 – Effective publication: Kura- Collimonas De Boer et al. 2004, 862VP hashi and Yokota (2007) VP Conchiformibius corrig. Xie and Yokota 2005, 1395VP – Valid pub- Epilithonimonas O’Sullivan et al. 2006, 177 lication: Validation List no. 104 – Effective publication: Xie Ethanoligenens Xing et al. 2006, 758VP and Yokota (2005a) Fabibacter S.C. Lau et al. 2006b, 1062VP VP Coraliomargarita J. Yoon et al. 2007f, 962 Fangia K.W. Lau et al. 2007, 2668VP VP Corallococcus Reichenbach 2007, 893 – Valid publication: Valida- Fastidiosipila Falsen et al. 2005, 856VP tion List no. 115 – Effective publication: Clavel et al. (2005) Flagellimonas S.S.Bae et al. 2007, 1051VP Costertonia K.K. Kwon et al. 2006c, 1352VP Flaviramulus Einen and Øvreås 2006, 2460VP Crabtreella Xie and Yokota 2006a, 623VP Flavisolibacter M.H. Yoon and Im 2007, 1837VP According to Rules 51b(1) and 51b (2), Crabtreella could be Fluviicola O’Sullivan et al. 2005, 2193VP regarded as an illegitimate name because the type species of the genus, Crabtreella saccharophila Xie and Yokota 2006a, is a later Formosa Ivanova et al. 2004a, 707VP homotypic synonym of Shinella zoogloeoides D.S. An et al. 2006a. Frondicola L. Zhang et al. 2007b, 1181VP Cryptanaerobacter Juteau et al. 2005, 248VP The name Frondicola L. Zhang et al. 2007 is illegitimate Curvibacter Ding and Yokota 2004, 2228VP because it is a later homonym of a fungal genus name Frondi- cola Hyde 1992. Deefgea Stackebrandt et al. 2007, 643VP Fulvivirga Nedashkovskaya et al. 2007d, 1048VP Defluviicoccus corrig. Maszenan et al. 2005a, 2109VP Gaetbulibacter Jung et al. 2005a, 1848VP Demequina Yi et al. 2007b, 154VP Gaetbulimicrobium J.H. Yoon et al. 2006a, 118VP Denitratisoma Fahrbach et al. 2006, 1549VP Galbibacter Khan et al. 2007c, 971VP Desulfarculus Kuever et al. 2006, 1VP – Valid publication: Valida- tion List no. 107 – Effective publication: Kuever et al. (2005q) Geoalkalibacter Zavarzina et al. 2007, 894VP – Valid publication: Validation List no. 115 – Effective publication: Zavarzina et Desulfatibacillum Cravo-Laureau et al. 2004a, 81VP al. (2006) Desulfatiferula Cravo-Laureau et al. 2007, 2701VP Geopsychrobacter Holmes et al. 2005, 547VP – Valid publication: VP Desulfitibacter M.B. Nielsen et al. 2006, 2835 Validation List no. 102 – Effective publication: Holmes et al. Desulfoglaeba Davidova et al. 2006, 2741VP (2004b) 1324 APPENDIX 1

Geosporobacter Klouche et al. 2007, 1760VP Insolitispirillum J.H. Yoon et al. 2007xxvi, 2834VP Geothermobacter Kashefi et al. 2005, 547VP – Valid publication: Valida- Isoptericola Stackebrandt et al. 2004b, 686VP tion List no. 102 – Effective publication: Kashefi et al. (2003) Jahnella corrig Reichenbach 2007, 894VP – Valid publication: Giesbergeria Grabovich et al. 2006, 571VP Validation List no. 115 – Effective publication: Reichenbach Gillisia Van Trappen et al. 2004e, 446VP (2005h) VP Gilvibacter Khan et al. 2007b, 268VP Jiangella L. Song et al. 2005, 883 VP Goodfellowia Labeda and Kroppenstedt 2006, 1205VP Jonquetella Jumas-Bilak et al. 2007a, 2747 Kaistella M.K. Kim et al. 2004, 2323VP The name Goodfellowia Labeda and Kroppenstedt 2006 is ille- gitimate because it is a later homonym of Goodfellowia Hartert Kaistia Im et al. 2005, 983VP – Valid publication: Validation List 1903 (Animalia, Chordata, Aves, Passeriformes, Sturnidae). no. 103 – Effective publication: Im et al. (2004c) See Principle 2. Kangiella J.H. Yoon et al. 2004j, 1832VP Gracilibacter Y.J. Lee et al. 2006, 2092VP Kofleria Reichenbach 2007, 894VP – Valid publication: Validation Gramella Nedashkovskaya et al. 2005f, 393VP List no. 115 – Effective publication: Reichenbach (2005m) Granulibacter Greenberg et al. 2006, 2614VP Kordia Sohn et al. 2004b, 678VP VP Granulicoccus Maszenan et al. 2007, 733VP Kordiimonas K.K. Kwon et al. 2005, 2036 VP Guggenheimella Wyss et al. 2005, 669VP Krasilnikovia Ara and Kudo 2007, 2449 – Valid publication: Valida- tion List no. 118 – Effective publication: Ara and Kudo (2007a) Gulbenkiania Vaz-Moreira et al. 2007b, 1110VP Kribbia Jung et al. 2006a, 2430VP Gulosibacter Manaia et al. 2004, 786VP Krokinobacter Khan et al. 2006a, 326VP Haematobacter Helsel et al. 2007, 1371VP – Valid publication: Valida- VP tion List no. 116 – Effective publication: Helsel et al. (2007) Ktedonobacter corrig. Cavaletti et al. 2007, 433 – Valid publica- tion: Validation List no. 114 – Effective publication: Cavaletti Haladaptatus Savage et al. 2007, 23VP et al. (2006b) Halalkalibacillus Echigo et al. 2007, 1083VP Labedella S.D. Lee 2007d, 2500VP Halalkalicoccus Xue et al. 2005, 2504VP Labrenzia Biebl et al. 2007, 1105VP Halolactibacillus Ishikawa et al. 2005, 2435VP Laceyella J.H. Yoon et al. 2005n, 398VP Halopiger Gutiérrez et al. 2007, 1404VP Lacinutrix Bowman and Nichols 2005, 1482VP VP Haloplanus Elevi Bardavid et al. 2007, 782 Lactonifactor Clavel et al. 2007, 894VP – Valid publication: Valida- Haloquadratum Burns et al. 2007, 391VP tion List no. 115 – Effective publication: Clavel et al. (2007) Halospina Sorokin et al. 2006a, 386VP Lactovum Matthies et al. 2005, 547VP – Valid publication: Valida- Halostagnicola Castillo et al. 2006b, 1521VP tion List no. 102 – Effective publication: Matthies et al. (2004) Halotalea Ntougias et al. 2007b, 1981VP Lapillicoccus S.D. Lee and Lee 2007, 2796VP Halovivax Castillo et al. 2006a, 767VP Larkinella Vancanneyt et al. 2006b, 239VP Herminiimonas Fernandes et al. 2005, 2236VP – Valid publication: Vali- Leadbetterella Weon et al. 2005, 2299VP dation List no. 106 – Effective publication: Fernandes et al. (2005) Lebetimonas Takai et al. 2005, 188VP Hespellia Whitehead et al. 2004, 244VP Leeia J.M. Lim et al. 2007a, 1205VP Hoeflea Peix et al. 2005, 1165VP Leeuwenhoekiella Nedashkovskaya et al. 2005m, 1035VP Hongiella Yi and Chun 2004a, 160VP Lentisphaera Cho et al. 2004, 1005VP – Valid publication: Valida- Howardella Cook et al. 2007, 2943VP tion List no. 98 – Effective publication: J.C. Cho et al. (2004) Humicoccus J.H. Yoon et al. 2007v, 59VP Leptolinea Yamada et al. 2006, 1339VP Humihabitans A. Kageyama et al. 2007c, 2165VP Levilinea Yamada et al. 2006, 1338VP VP Hyalangium Reichenbach 2007, 894VP – Valid publication: Val- Lishizhenia K.W. Lau et al. 2006b, 2321 idation List no. 115 – Effective publication: Reichenbach Litoricola H. Kim et al. 2007a, 1796VP (2005e) Loktanella Van Trappen et al. 2004a, 1266VP VP Hydrocarboniphaga Palleroni et al. 2004, 1207 Longilinea Yamada et al. 2007, 2303VP VP Hydrogenimonas Takai et al. 2004b, 30 Luedemannella Ara and Kudo 2007, 1372VP – Valid publication: Hydrogenivirga S. Nakagawa et al. 2004a, 2083VP Validation List no. 116 – Effective publication: Ara and Kudo Hylemonella Spring et al. 2004, 104VP (2007d) VP Ignatzschineria Tóth et al. 2007 (illegitimate synonym Schineria Luteibacter Johansen et al. 2005, 2289 Tóth et al. 2001), 180VP Lutibacter Choi and Cho 2006, 773VP Ignisphaera Niederberger et al. 2006, 970VP Lutimonas S.J. Yang et al. 2007, 1682VP APPENDIX 1 1325

Lysinibacillus Ahmed et al. 2007d, 1121VP Neoasaia Yukphan et al. 2006, 499VP – Valid publication: Vali- Mahella Bonilla Salinas et al. 2004b, 2172VP dation List no. 108 – Effective publication: Yukphan et al. (2005c) Malikia Spring et al. 2005b, 627VP Neptuniibacter Arahal et al. 2007, 1004VP Maribacter Nedashkovskaya et al. 2004b, 1021VP Nereida Pujalte et al. 2005c, 634VP Maribius Choi et al. 2007, 274VP Nesiotobacter Donachie et al. 2006, 564VP Marinicola J.H. Yoon et al. 2005c, 860VP Niabella B.Y. Kim et al. 2007, 540VP Mariniflexile Nedashkovskaya et al. 2006a, 1636VP Niastella Weon et al. 2006f, 1779VP Marinimicrobium J.M. Lim et al. 2006c, 656VP VP VP Nicoletella Kuhnert et al. 2005, 547 – Valid publication: Valida- Marinovum Martens et al. 2006, 1302 tion List no. 102 – Effective publication: Kuhnert et al. (2004) VP Maritimibacter K. Lee et al. 2007, 1655 Nitratifractor S. Nakagawa et al. 2005c, 931VP VP Marixanthomonas Romanenko et al. 2007a, 459 Nitratireductor Labbé et al. 2004, 272VP VP Martelella Rivas et al. 2005d, 957 Nitratiruptor S. Nakagawa et al. 2005c, 931VP VP Mechercharimyces Matsuo et al. 2006, 2840 Nitrincola Dimitriu et al. 2005, 2276VP VP Meganema Thomsen et al. 2006, 1867 Nonlabens S.C. Lau et al. 2005c, 2281VP VP Metascardovia Okamoto et al. 2007, 2449 – Valid publication: Novispirillum xxvi, 2832VP Validation List no. 118 – Effective publication: Okamoto et al. VP (2007) Oceanibulbus Wagner-Döbler et al. 2004, 1183 VP Methanomethylovorans Lomans et al. 2004, 307VP – Valid publica- Oceanicola J.C. Cho and Giovannoni 2004b, 1133 tion: Validation List no. 96 – Effective publication: Lomans Olivibacter Ntougias et al. 2007a, 402VP et al. (1999) Olleya Mancuso Nichols et al. 2005, 1560VP Methermicoccus Cheng et al. 2007, 2968VP Oribacterium Carlier et al. 2004, 1614VP Methylibium Nakatsu et al. 2006, 988VP Ornithinibacillus Mayr et al. 2006, 1386VP Methylohalobius Heyer et al. 2005, 1824VP Oryzihumus A. Kageyama et al. 2005a, 2557VP Methylohalomonas Sorokin et al. 2007d, 2766VP Oscillibacter Iino et al. 2007, 1844VP Methylonatrum Sorokin et al. 2007d, 2768VP Ottowia Spring et al. 2004, 103VP Methylosoma Rahalkar et al. 2007, 1078VP Owenweeksia K.W. Lau et al. 2005, 1055VP Methylotenera Kalyuzhnaya et al. 2006a, 2822VP Palleronia Martínez-Checa et al. 2005, 2528VP Methylothermus Tsubota et al. 2005, 1883VP Paludibacter Ueki et al. 2006a, 43VP Methylothermus is illegitimate because the type species of the Parabacteroides Sakamoto and Benno 2006, 1602VP genus, Methylothermus thermalis, is not validly published. Paraferrimonas Khan and Harayama 2007, 1496VP VP Methyloversatilis Kalyuzhnaya et al. 2006b, 2521 Parapedobacter M.K. Kim et al. 2007b, 1339VP VP Microcella Tiago et al. 2005, 1743 – Valid publication: Valida- Parasporobacterium Lomans et al. 2004, 307VP – Valid publication: Val- tion List no. 105 – Effective publication: Tiago et al. (2005b) idation List no. 96 – Effective publication: Lomans et al. (2001) VP Millisia Soddell et al. 2006a, 742 Parvibaculum Schleheck et al. 2004, 1496VP VP Mitsuaria Amakata et al. 2005, 1930 Parvimonas Tindall and Euzéby 2006, 2712VP Modicisalibacter Ben Ali Gam et al. 2007, 2311VP Patulibacter Y. Takahashi et al. 2006, 405VP Moryella Carlier et al. 2007, 726VP Paucibacter Rapala et al. 2005, 1566VP Mucilaginibacter Pankratov et al. 2007, 2352VP Paucisalibacillus Nunes et al. 2006, 1842VP Mucispirillum Robertson et al. 2005, 1203VP Pelagibaca J.C. Cho and Giovannoni 2006, 857VP Myceligenerans Cui et al. 2004, 1292VP Pelagibacillus Y.G. Kim et al. 2007b, 1558VP Nakamurella Tao et al. 2004, 999VP – Illegitimate synonym: Pelagicoccus J. Yoon et al. 2007e, 1381VP Microsphaera Yoshimi et al. 1996 Pelomonas Xie and Yokota 2005f, 2424VP Natranaerobius Mesbah et al. 2007, 2511VP Pelosinus Shelobolina et al. 2007, 133VP Natronocella Sorokin et al. 2007, 1372VP – Valid publication: Valida- Peredibacter Davidov and Jurkevitch 2004, 1451VP tion List no. 116 – Effective publication: Sorokin et al. (2007e) Perexilibacter J. Yoon et al. 2007a, 965VP Natronolimnobius Itoh et al. 2005, 1744VP – Valid publication: VP Validation List no. 105 – Effective publication: Itoh et al. Persicitalea J. Yoon et al. 2007b, 1016 (2005) Persicivirga O’Sullivan et al. 2006, 177VP Naxibacter P. Xu et al. 2005, 1151VP Petrimonas Grabowski et al. 2005, 1118VP 1326 APPENDIX 1

Petrobacter Bonilla Salinas et al. 2004a, 647VP Saccharophagus Ekborg et al. 2005, 1548VP Phaeobacter Martens et al. 2006, 1301VP Salicola Maturrano et al. 2006, 1689VP Phycicoccus S.D. Lee 2006f, 2371VP Salimicrobium J.H. Yoon et al. 2007xxi, 2409VP Pibocella Nedashkovskaya et al. 2005b, 179VP Salinibacillus Ren and Zhou 2005, 952VP Pilibacter Higashiguchi et al. 2006, 18VP Salinimonas Jeon et al. 2005c, 241VP Piscibacillus Tanasupawat et al. 2007a, 1415VP Salinispora Maldonado et al. 2005, 1763VP Planifilum Hatayama et al. 2005b, 2104VP Salipiger Martínez-Cánovas et al. 2004d, 1739VP Pleomorphomonas Xie and Yokota 2005d, 1236VP Salirhabdus Albuquerque et al. 2007, 1569VP Polymorphospora Tamura et al. 2006, 1961VP Salsuginibacillus Carrasco et al. 2007b, 2384VP Pontibacillus J.M. Lim et al. 2005b, 168VP Sandarakinorhabdus Gich and Overmann 2006, 852VP Pontibacter Nedashkovskaya et al. 2005l, 2585VP Sandarakinotalea Khan et al. 2006b, 960VP Prolixibacter Holmes et al. 2007, 705VP Schlesneria Kulichevskaya et al. 2007, 2685VP Propionicicella H.S. Bae et al. 2006, 2026VP – Valid publication: Sedimenticola Narasingarao and Häggblom 2006, 2507VP – Valid Validation List no. 111 – Effective publication: H.S. Bae et al. publication: Validation List no. 112 – Effective publication: (2006b) Narasingarao and Häggblom (2006) Proteiniphilum Chen and Dong 2005, 2259VP Sediminibacter Khan et al. 2007b, 267VP Pseudidiomarina Jean et al. 2006b, 904VP Sediminicola Khan et al. 2006c, 843VP Pseudochrobactrum Kämpfer et al. 2006h, 1825VP Sediminitomix Khan et al. 2007d, 1692VP Pseudoclavibacter Manaia et al. 2004, 787VP Segetibacter D.S. An et al. 2007a, 1829VP Pseudolabrys Kämpfer et al. 2006j, 2470VP Segniliparus Butler et al. 2005, 1621VP Pseudoruegeria J.H. Yoon et al. 2007xxviii, 546VP Seinonella J.H. Yoon et al. 2005n, 399VP Pseudosphingobacterium Vaz-Moreira et al. 2007c, 1537VP Sejongia Yi et al. 2005b, 414VP Pseudovibrio Shieh et al. 2004, 2311VP Serinicoccus Yi et al. 2004c, 1587VP Pullulanibacillus Hatayama et al. 2006, 2549VP Shimazuella D.J. Park et al. 2007, 2663VP Puniceicoccus Choo et al. 2007, 536VP Shimia Choi and Cho 2006, 1872VP Pusillimonas Stolz et al. 2005, 1080VP Shinella D.S. An et al. 2006a, 446VP Pyxidicoccus corrig. Reichenbach 2007, 894VP – Valid publica- Silanimonas E.M. Lee et al. 2005, 387VP tion: Validation List no. 115 – Effective publication: Reichen- Silvimonas H.C. Yang et al. 2005, 2331VP bach (2005c) Simplicispira Grabovich et al. 2006, 575VP Quadrisphaera Maszenan et al. 2005b, 1774VP Sinococcus W.J. Li et al. 2006d, 1191VP Quatrionicoccus Tindall and Euzéby 2006, 2712VP The name Sinococcus W.J. Li et al. 2006d is illegitimate because VP Rapidithrix Srisukchayakul et al. 2007, 2277 it is a later homonym of an insect genus name Sinococcus Wu Reichenbachiella Nedashkovskaya et al. 2005l, 2587VP and Zheng 2000. Reinekea Romanenko et al. 2004b, 672VP Smaragdicoccus Adachi et al. 2007, 300VP Rhodonellum Schmidt et al. 2006, 2891VP Sneathiella Jordan et al. 2007, 119VP Rhodopirellula Schlesner et al. 2004, 1577VP Solimonas M.K. Kim et al. 2007a, 2593VP Rhodovarius Kämpfer et al. 2004, 1909VP – Valid publication: Valida- Sphaerisporangium corrig. Ara and Kudo 2007, 2449VP – Valid tion List no. 100 – Effective publication: Kämpfer et al. (2004b) publication: Validation List no. 118 – Effective publication: Robiginitalea J.C. Cho and Giovannoni 2004a, 1104VP Ara and Kudo (2007b) VP Robiginitomaculum K. Lee et al. 2007b, 2598VP Sphingosinicella Maruyama et al. 2006, 88 VP Roseibacterium T. Suzuki et al. 2006, 420VP Sporacetigenium S. Chen et al. 2006, 723 VP Roseicyclus Rathgeber et al. 2005, 1602VP Sporotalea Boga et al. 2007, 894 – Valid publication: Validation List no. 115 – Effective publication: Boga et al. (2007) Roseisalinus Labrenz et al. 2005, 45VP Stackebrandtia Labeda and Kroppenstedt 2005, 1690VP Roseivirga Nedashkovskaya et al. 2005c, 232VP Stanierella Nedashkovskaya et al. 2005h, 227VP Ruania Q. Gu et al. 2007a, 811VP Stenothermobacter S.C. Lau et al. 2006a, 183VP Rubellimicrobium Denner et al. 2006, 1360VP Subdoligranulum Holmstrøm et al. 2004, 1909VP – Valid publica- Rubritalea Scheuermayer et al. 2006, 2123VP tion: Validation List no. 100 – Effective publication: Holmstrøm Saccharibacter Jojima et al. 2004, 2266VP et al. (2004) APPENDIX 1 1327

Subsaxibacter Bowman and Nichols 2005, 1481VP Validation List no. 105 – Effective publication: Albuquerque Subsaximicrobium Bowman and Nichols 2005, 1480VP et al. (2005) VP Sulfuricurvum Kodama and Watanabe 2004, 2299VP Tuberibacillus Hatayama et al. 2006, 2549 VP Sulfurivirga Takai et al. 2006a, 1927VP Turneriella Levett et al. 2005, 1499 VP Sulfurovum Inagaki et al. 2004, 1480VP Ulvibacter Nedashkovskaya et al. 2004c, 121 VP Swaminathania Loganathan and Nair 2004, 1189VP Umezawaea Labeda and Kroppenstedt 2007, 2761 VP Tamlana S.D. Lee 2007a, 766VP Undibacterium Kämpfer et al. 2007d, 1513 VP Telmatospirillum Sizova et al. 2007, 1372VP – Valid publica- Uruburuella Vela et al. 2005, 645 tion: Validation List no. 116 – Effective publication: Sizova Viridibacillus Albert et al. 2007, 2734VP et al. (2007) Volucribacter Christensen et al. 2004, 817VP VP Tenuibacillus Ren and Zhou 2005, 98 Vulcanibacillus L’Haridon et al. 2006, 1050VP VP Tepidanaerobacter Sekiguchi et al. 2006, 1627 Wautersia Vaneechoutte et al. 2004, 322VP VP Tepidicella França et al. 2006b, 910 Wautersiella Kämpfer et al. 2006a, 2328VP VP Tepidimicrobium Slobodkin et al. 2006b, 371 Wenxinia Ying et al. 2007b, 1714VP VP Terribacillus S.Y. An et al. 2007a, 54 Winogradskyella Nedashkovskaya et al. 2005a, 51VP VP Terriglobus Eichorst et al. 2007, 1933 – Valid publication: Vali- Woodsholea Abraham et al. 2004, 1232VP dation List no. 117 – Effective publication: Eichorst et al. Xylanibacter Ueki et al. 2006b, 2220VP (2007) Xylanibacterium Rivas et al. 2004e, 560VP Terrimonas Xie and Yokota 2006c, 1120VP Xylanimicrobium Stackebrandt and Schumann 2004, 1385VP Tetrathiobacter Ghosh et al. 2005, 1785VP Yangia Dai et al. 2006, 531VP Thalassobacillus García et al. 2005, 1793VP Yania W.J. Li et al. 2004a, 529VP Thalassobacter Macián et al. 2005a, 109VP The name Yania W.J. Li et al. 2004a is illegitimate because it is Thalassobius Arahal et al. 2005, 2374VP a later homonym of Yania Roewer 1919 (Opiliones, Arachnida, VP Thalassococcus O.O. Lee et al. 2007, 1923 Arthropoda, Animalia) and a later homonym of Yania Huang Thalassolituus Yakimov et al. 2004, 145VP 1997 (Hesperiidae, Papilionoidea, Heteroneura, Glossata, Lep- Thermincola Sokolova et al. 2005, 2072VP idoptera, Insecta, Arthropoda, Animalia). See Principle 2. VP Thermodesulfatator Moussard et al. 2004, 231VP Yeosuana K.K. Kwon et al. 2006a, 731 VP Thermodesulfobium Mori et al. 2004, 1VP – Valid publication: Vali- Yonghaparkia J.H. Yoon et al. 2006k, 2418 dation List no. 95 – Effective publication: Mori et al. (2003) Zeaxanthinibacter Asker et al. 2007a, 841VP Thermoflavimicrobium J.H. Yoon et al. 2005n, 399VP Zhihengliuella Y.Q. Zhang et al. 2007a, 1019VP Thermogymnomonas Itoh et al. 2007, 2560VP Zhouia Z.P Liu et al. 2006a, 2826VP Thermolithobacter Sokolova et al. 2007, 1372VP – Valid publica- Zimmermannella Y.C. Lin et al. 2004, 1674VP tion: Validation List no. 116 – Effective publication: Sokolova Strict application of the Rule 51b(1) indicates that the genus et al. (2007) name Zimmermannella Y.C. Lin et al. 2004 is illegitimate. VP Thermosediminibacter Lee et al. 2006, 925 – Valid publication: Zobellella Y.T. Lin and Shieh 2006, 1214VP Validation List no. 109 – Effective publication: Y.J. Lee et al. Zunongwangia corrig. Qin et al. 2007, 1372VP – Valid publication: (2005) Validation List no. 116 – Effective publication: Qin et al. (2007) Thermosinus Sokolova et al. 2004, 2357VP Thermovirga Dahle and Birkeland 2006, 1544VP New species VP Thiobacter Hirayama et al. 2005, 471VP Acaricomes phytoseiuli Pukall et al. 2006, 468 VP Thioclava Sorokin et al. 2005b, 1074VP Acetanaerobacterium elongatum Chen and Dong 2004, 2261 VP Thiohalomonas Sorokin et al. 2007c, 1587VP Acetobacter ghanensis Cleenwerck et al. 2007, 1650 VP Thiohalophilus Sorokin et al. 2007, 1933VP – Valid publication: Acetobacter nitrogenifigens Dutta and Gachhui 2006, 1902 Validation List no. 117 – Effective publication: Sorokin et al. Acetobacter oeni Silva et al. 2006, 22VP (2007b) Acetobacter senegalensis Ndoye et al. 2007, 1580VP VP Thioreductor S. Nakagawa et al. 2005a, 603 Acidaminococcus intestini Jumas-Bilak et al. 2007b, 2318VP VP Thiovirga Ito et al. 2005, 1063 Acidianus sulfidivorans Plumb et al. 2007, 1422VP VP Thorsellia Kämpfer et al. 2006f, 337 Acidicaldus organivorans corrig. Johnson et al. 2006, 1459VP – Truepera da Costa et al. 2005 (complete authorship reads da Valid publication: Validation List no. 110 – Effective publica- Costa, Rainey and Albuquerque), 1744VP – Valid publication: tion: Johnson et al. (2006) 1328 APPENDIX 1

Actinoalloteichus hymeniacidonis H. Zhang et al. 2006, 2311VP Agromyces lapidis Jurado et al. 2005c, 874VP Actinoalloteichus spitiensis Singla et al. 2005, 2563VP Agromyces neolithicus Jurado et al. 2005a, 157VP Actinobaculum massiliense corrig. Greub and Raoult 2006, 2025VP Agromyces salentinus Jurado et al. 2005a, 156VP – Valid publication: Validation List no. 111 – Effective publi- Agromyces subbeticus Jurado et al. 2005b, 1900VP cation: Greub and Raoult (2002) Agromyces ulmi Rivas et al. 2004c, 1989VP Actinocatenispora sera Matsumoto et al. 2007, 2653VP Akkermansia muciniphila Derrien et al. 2004, 1474VP Actinocatenispora thailandica Thawai et al. 2006, 1793VP Alcaligenes aquatilis Van Trappen et al. 2005a, 2573VP Actinocorallia aurea Tamura et al. 2007a, 2054VP Alcanivorax balearicus Rivas et al. 2007, 1334VP Actinocorallia cavernae S.D. Lee 2006c, 1087VP Alcanivorax dieselolei C. Liu and Shao 2005, 1184VP Actinomadura alba Y.X. Wang et al. 2007, 1738VP Algibacter lectus Nedashkovskaya et al. 2004d, 1260VP Actinomadura hallensis S.D. Lee and Jeong 2006, 262VP Algibacter mikhailovii Nedashkovskaya et al. 2007e, 2148VP Actinomadura mexicana Quintana et al. 2004, 307VP – Valid pub- Algoriphagus antarcticus Van Trappen et al. 2004f, 1972VP lication: Validation List no. 96 – Effective publication: Quin- tana et al. (2003) Algoriphagus aquimarinus Nedashkovskaya et al. 2004h, 1762VP Actinomadura meyerae corrig. Quintana et al. 2004, 307VP – Valid Algoriphagus chordae Nedashkovskaya et al. 2004h, 1762VP publication: Validation List no. 96 – Effective publication: Algoriphagus locisalis J.H. Yoon et al. 2005e, 1638VP Quintana et al. (2003) Algoriphagus terrigena J.H. Yoon et al. 2006o, 779VP VP Actinomadura napierensis Cook et al. 2005, 705 Algoriphagus vanfongensis Nedashkovskaya et al. 2007b, 1990VP VP Actinomadura rudentiformis Le Roes and Meyers 2007, 48 Algoriphagus winogradskyi Nedashkovskaya et al. 2004h, 1763VP VP Actinomyces dentalis Hall et al. 2005, 430 Algoriphagus yeomjeoni J.H. Yoon et al. 2005b, 869VP VP Actinomyces hongkongensis Woo et al. 2004, 307 – Valid publication: Alicyclobacillus contaminans Goto et al. 2007, 1281VP Validation List no. 96 – Effective publication: Woo et al. (2003) Alicyclobacillus fastidiosus Goto et al. 2007, 1281VP Actinomyces ruminicola D. An et al. 2006b, 2045VP Alicyclobacillus kakegawensis Goto et al. 2007, 1283VP Actinoplanes couchii Kämpfer et al. 2007a, 722VP Alicyclobacillus macrosporangiidus Goto et al. 2007, 1283VP Actinoplanes liguriensis Wink et al. 2006, 2128VP Alicyclobacillus sacchari Goto et al. 2007, 1283VP Actinoplanes teichomyceticus Wink et al. 2006, 2129VP Alicyclobacillus shizuokensis Goto et al. 2007, 1283VP Actinospica acidiphila Cavaletti et al. 2006a, 1752VP Alicyclobacillus tolerans Karavaiko et al. 2005, 946VP Actinospica robiniae Cavaletti et al. 2006a, 1752VP Alicyclobacillus vulcanalis Simbahan et al. 2004, 1706VP Adhaeribacter aquaticus Rickard et al. 2005, 827VP Alistipes onderdonkii Y. Song et al. 2006, 1988VP Advenella incenata Coenye et al. 2005, 255VP Alistipes shahii Y. Song et al. 2006, 1989VP Aeriscardovia aeriphila Simpson et al. 2004, 405VP Alkalibacillus filiformis Romano et al. 2005d, 2397VP Aerococcus suis Vela et al. 2007b, 1293VP Alkalibacillus salilacus Jeon et al. 2005a, 1895VP Aeromicrobium alkaliterrae J.H. Yoon et al. 2005q, 2174VP Alkalibacillus silvisoli Usami et al. 2007, 773VP Aeromicrobium panaciterrae Y.S. Cui et al. 2007a, 690VP Alkalibacter saccharofermentans Garnova et al. 2005, 983VP – Valid VP Aeromicrobium tamlense S.D. Lee and Kim 2007, 339 publication: Validation List no. 103 – Effective publication: Aeromonas bivalvium Miñana-Galbis et al. 2007, 585VP Garnova et al. (2004) Aeromonas molluscorum Miñana-Galbis et al. 2004, 2077VP Alkalibacterium iburiense K. Nakajima et al. 2005, 1529VP Aeromonas sharmana Saha and Chakrabarti 2006b, 1907VP Alkalibacterium psychrotolerans Yumoto et al. 2004b, 2382VP Aeromonas simiae Harf-Monteil et al. 2004, 484VP Alkaliflexus imshenetskii Zhilina et al. 2005, 1395VP – Valid publi- Aeropyrum camini S. Nakagawa et al. 2004b, 333VP cation: Validation List no. 104 – Effective publication: Zhilina et al. (2004) Aestuariibacter halophilus Yi et al. 2004b, 575VP Alkalilimnicola ehrlichii Hoeft et al. 2007, 510VP Aestuariibacter salexigens Yi et al. 2004b, 573VP Alkalimonas amylolytica Ma et al. 2007, 433VP – Valid publication: Val- Aestuariimicrobium kwangyangense Jung et al. 2007b, 2117VP idation List no. 114 – Effective publication: Y. Ma et al. (2004) Agarivorans albus Kurahashi and Yokota 2004, 696VP Alkalimonas collagenimarina Kurata et al. 2007, 1552VP Agrococcus casei Bora et al. 2007, 95VP Alkalimonas delamerensis Ma et al. 2007, 433VP – Valid publication: Val- VP Agrococcus lahaulensis Mayilraj et al. 2006f, 1809 idation List no. 114 – Effective publication: Y. Ma et al. (2004) VP Agromyces allii Jung et al. 2007c, 591 Allobaculum stercoricanis Greetham et al. 2006, 1459VP – Valid Agromyces humatus Jurado et al. 2005c, 874VP publication: Validation List no. 110 – Effective publication: Agromyces italicus Jurado et al. 2005c, 874VP Greetham et al. (2004b) APPENDIX 1 1329

Alloscardovia omnicolens Huys et al. 2007, 1445VP Anoxybacillus kamchatkensis Kevbrin et al. 2006, 925VP – Valid Altererythrobacter epoxidivorans K.K. Kwon et al. 2007, 2210VP publication: Validation List no. 109 – Effective publication: Kevbrin et al. (2005) Alteromonas addita Ivanova et al. 2005b, 1067VP Anoxybacillus kestanbolensis Dulger et al. 2004, 1503VP Alteromonas hispanica Martínez-Checa et al. 2005, 2389VP Anoxybacillus voinovskiensis Yumoto et al. 2004a, 1241VP Alteromonas litorea J.H. Yoon et al. 2004m, 1200VP Aquicella lusitana Santos et al. 2004, 1VP – Valid publication: Vali- Alteromonas simiduii Chiu et al. 2007, 1215VP dation List no. 95 – Effective publication: Santos et al. (2003) Alteromonas stellipolaris Van Trappen et al. 2004b, 1160VP Aquicella siphonis Santos et al. 2004, 1VP – Valid publication: Vali- Alteromonas tagae Chiu et al. 2007, 1215VP dation List no. 95 – Effective publication: Santos et al. (2003) Aminiphilus circumscriptus Díaz et al. 2007, 1917VP Aquiflexum balticum Brettar et al. 2004, 2339VP Aminobacter ciceronei McDonald et al. 2005, 1830VP Aquimarina intermedia Nedashkovskaya et al. 2006f, 2039VP Aminobacter lissarensis McDonald et al. 2005, 1831VP Aquimarina muelleri Nedashkovskaya et al. 2005h, 227VP Amphibacillus sediminis S.Y. An et al. 2007e, 2491VP Aquimonas voraii Saha et al. 2005a, 1493VP Amycolatopsis australiensis Tan et al. 2006, 2299VP Aquincola tertiaricarbonis Lechner et al. 2007, 1301VP Amycolatopsis benzoatilytica Majumdar et al. 2006, 202VP Aquisalimonas asiatica Márquez et al. 2007, 1141VP Amycolatopsis decaplanina Wink et al. 2004, 237VP Aquitalea magnusonii H.T. Lau et al. 2006, 870VP Amycolatopsis echigonensis Ding et al. 2007, 1750VP Arcanobacterium bialowiezense Lehnen et al. 2006, 864VP Amycolatopsis halotolerans S.D. Lee 2006a, 552VP Arcanobacterium bonasi Lehnen et al. 2006, 864VP Amycolatopsis jejuensis S.D. Lee 2006a, 552VP Arcicella aquatica Nikitin et al. 2004, 684VP Amycolatopsis minnesotensis S.D. Lee et al. 2006, 268VP Arcobacter cibarius Houf et al. 2005, 716VP Amycolatopsis nigrescens Groth et al. 2007, 517VP Arcobacter halophilus Donachie et al. 2005, 1275VP Amycolatopsis niigatensis Ding et al. 2007, 1750VP Arenibacter certesii Nedashkovskaya et al. 2004a, 1174VP Amycolatopsis palatopharyngis Huang et al. 2004b, 361VP Arenibacter echinorum Nedashkovskaya et al. 2007c, 2657VP Amycolatopsis plumensis Saintpierre-Bonaccio et al. 2005, 2060VP Arenibacter palladensis Nedashkovskaya et al. 2006g, 159VP Amycolatopsis regifaucium Tan et al. 2007, 2566VP Arenimonas donghaensis S.W. Kwon et al. 2007c, 956VP Amycolatopsis rifamycinica Bala et al. 2004, 1148VP Arenimonas malthae C.C. Young et al. 2007d, 2792VP Amycolatopsis saalfeldensis Carlsohn et al. 2007a, 1644VP Arsenicicoccus bolidensis Collins et al. 2004d, 608VP Amycolatopsis taiwanensis Tseng et al. 2006, 1814VP Arthrobacter ardleyensis M. Chen et al. 2005, 2235VP – Valid pub- Anaerobranca californiensis Gorlenko et al. 2004b, 742VP lication: Validation List no. 106 – Effective publication: M. Anaerofustis stercorihominis Finegold et al. 2004, 1005VP – Valid Chen et al. (2005) publication: Validation List no. 98 – Effective publication: Arthrobacter arilaitensis Irlinger et al. 2005, 459VP Finegold et al. (2004a) Arthrobacter bergerei Irlinger et al. 2005, 460VP Anaerolinea thermolimosa Yamada et al. 2006, 1338VP Arthrobacter castelli Heyrman et al. 2005c, 1461VP Anaerosporobacter mobilis Jeong et al. 2007, 1786VP Arthrobacter gangotriensis Gupta et al. 2004, 2376VP Anaerotruncus colihominis Lawson et al. 2004b, 415VP Arthrobacter kerguelensis Gupta et al. 2004, 2376VP Anaerovirgula multivorans Pikuta et al. 2006b, 2628VP Arthrobacter monumenti Heyrman et al. 2005c, 1461VP Ancylobacter polymorphus Xin et al. 2006, 1187VP Arthrobacter nitroguajacolicus Kotoučková et al. 2004, 776VP Ancylobacter rudongensis Xin et al. 2004, 386VP Arthrobacter parietis Heyrman et al. 2005c, 1462VP Ancylobacter vacuolatus Xin et al. 2006, 1186VP Arthrobacter pigmenti Heyrman et al. 2005c, 1462VP Anderseniella baltica Brettar et al. 2007, 2404VP Arthrobacter psychrophenolicus Margesin et al. 2004, 2070VP Andreprevotia chitinilytica Weon et al. 2007f, 1574VP Arthrobacter russicus Y. Li et al. 2004b, 834VP Aneurinibacillus danicus Goto et al. 2004, 425VP Arthrobacter scleromae Huang et al. 2005, 1743VP – Valid publica- Aneurinibacillus terranovensis Allan et al. 2005, 1048VP tion: Validation List no. 105 – Effective publication: Huang Angulomicrobium amanitiforme Fritz et al. 2004, 656VP et al. (2005b) VP Anoxybacillus amylolyticus Poli et al. 2006, 1459VP – Valid publica- Arthrobacter stackebrandtii Tvrzová et al. 2005b, 807 tion: Validation List no. 110 – Effective publication: Poli et Arthrobacter tecti Heyrman et al. 2005c, 1462VP al. (2006) Arthrobacter tumbae Heyrman et al. 2005c, 1463VP Anoxybacillus ayderensis Dulger et al. 2004, 1502VP Asaia krungthepensis Yukphan et al. 2004a, 315VP Anoxybacillus contaminans De Clerck et al. 2004b, 943VP Asanoa iriomotensis Tamura and Sakane 2005, 726VP 1330 APPENDIX 1

Aspromonas composti Jin et al. 2007, 1879VP Bacillus fordii Scheldeman et al. 2004b, 1362VP Asticcacaulis benevestitus Vasilyeva et al. 2006, 2087VP Bacillus fortis Scheldeman et al. 2004b, 1362VP Asticcacaulis taihuensis Z.P. Liu et al. 2005b, 1241VP Bacillus galactosidilyticus Heyndrickx et al. 2004, 619VP Atopococcus tabaci Collins et al. 2005, 1695VP Bacillus gelatini De Clerck et al. 2004b, 944VP Atopostipes suicloacalis corrig. Cotta et al. 2004, 1425VP – Valid Bacillus ginsengihumi Ten et al. 2007, 1371VP – Valid publication: Val- publication: Validation List no. 99 – Effective publication: idation List no. 116 – Effective publication: Ten et al. (2006c) Cotta et al. (2004) Bacillus hemicellulosilyticus Nogi et al. 2005b, 2312VP VP Aurantimonas altamirensis Jurado et al. 2006, 2585 Bacillus herbersteinensis Wieser et al. 2005, 2122VP VP Aurantimonas ureilytica Weon et al. 2007g, 1719 Bacillus humi Heyrman et al. 2005b, 115VP VP Aureispira marina Hosoya et al. 2006, 2933 Bacillus hwajinpoensis J.H. Yoon et al. 2004e, 807VP VP Aureispira maritima Hosoya et al. 2007, 1950 Bacillus idriensis Ko et al. 2006, 2543VP VP Avibacterium endocarditidis Bisgaard et al. 2007, 1732 Bacillus indicus Suresh et al. 2004a, 1373VP VP Azohydromonas australica Xie and Yokota 2005f, 2423 Bacillus infantis Ko et al. 2006, 2543VP VP Azonexus caeni Quan et al. 2006, 1046 Bacillus koreensis J.M. Lim et al. 2006b, 61VP VP Azorhizobium doebereinerae Moreira et al. 2006, 1459 – Valid Bacillus kribbensis J.M. Lim et al. 2007b, 2914VP publication: Validation List no. 110 – Effective publication: Bacillus lehensis Ghosh et al. 2007, 241VP Moreira et al. (2006) Bacillus litoralis J.H. Yoon and Oh 2005b, 1947VP Azospira restricta H.S. Bae et al. 2007, 1525VP Bacillus macauensis T. Zhang et al. 2006, 351VP Azospirillum canadense Mehnaz et al. 2007a, 623VP Bacillus macyae Santini et al. 2004, 2243VP Azospirillum melinis Peng et al. 2006, 1268VP Bacillus malacitensis Ruiz-García et al. 2005, 1283VP Azospirillum oryzae Xie and Yokota 2005e, 1437VP Bacillus mannanilyticus Nogi et al. 2005b, 2314VP Azospirillum zeae Mehnaz et al. 2007b, 2808VP Bacillus massiliensis Glazunova et al. 2006b, 1487VP Bacillus acidiceler Peak et al. 2007, 2035VP Bacillus muralis Heyrman et al. 2005a, 128VP Bacillus acidicola Albert et al. 2005, 2129VP Bacillus murimartini Borchert et al. 2007, 2892VP Bacillus aerius Shivaji et al. 2006, 1471VP Bacillus niabensis S.W. Kwon et al. 2007d, 1910VP Bacillus aerophilus Shivaji et al. 2006, 1471VP Bacillus novalis Heyrman et al. 2004a, 52VP Bacillus akibai Nogi et al. 2005b, 2314VP Bacillus odysseyi La Duc et al. 2004, 200VP Bacillus algicola Ivanova et al. 2004, 1425VP – Valid publica- tion: Validation List no. 99 – Effective publication: Ivanova Bacillus okhensis Nowlan et al. 2006, 1076VP et al. (2004b) Bacillus oshimensis Yumoto et al. 2005a, 910VP Bacillus altitudinis Shivaji et al. 2006, 1472VP Bacillus panaciterrae Ten et al. 2006b, 2864VP Bacillus alveayuensis S.S. Bae et al. 2005, 1214VP Bacillus patagoniensis Olivera et al. 2005, 446VP Bacillus arenosi Heyrman et al. 2005b, 114VP Bacillus plakortidis Borchert et al. 2007, 2892VP Bacillus arsenicus Shivaji et al. 2005d, 1126VP Bacillus pocheonensis Ten et al. 2007, 2535VP Bacillus arvi Heyrman et al. 2005b, 115VP Bacillus qingdaonensis Q.F. Wang et al. 2007a, 1146VP Bacillus asahii Yumoto et al. 2004c, 1999VP Bacillus ruris Heyndrickx et al. 2005, 2552VP Bacillus axarquiensis Ruiz-García et al. 2005, 1282VP Bacillus safensis Satomi et al. 2006a, 1739VP Bacillus bataviensis Heyrman et al. 2004a, 55VP Bacillus salarius J.M. Lim et al. 2006e, 376VP Bacillus bogoriensis Vargas et al. 2005, 901VP Bacillus saliphilus Romano et al. 2005c, 162VP Bacillus boroniphilus Ahmed et al. 2007, 893VP – Valid publica- Bacillus selenatarsenatis S. Yamamura et al. 2007, 1063VP tion: Validation List no. 115 – Effective publication: Ahmed Bacillus seohaeanensis J.C. Lee et al. 2006, 1896VP et al. (2007a) Bacillus shackletonii Logan et al. 2004b, 375VP Bacillus cellulosilyticus Nogi et al. 2005b, 2314VP Bacillus soli Heyrman et al. 2004a, 55VP Bacillus chagannorensis Carrasco et al. 2007a, 2087VP Bacillus stratosphericus Shivaji et al. 2006, 1471VP Bacillus cibi J.H. Yoon et al. 2005p, 735VP Bacillus taeanensis J.M. Lim et al. 2006a, 2905VP Bacillus decisifrondis L. Zhang et al. 2007a, 977VP Bacillus tequilensis Gatson et al. 2006, 1481VP Bacillus drentensis Heyrman et al. 2004a, 56VP Bacillus thioparans corrig. Pérez-Ibarra et al. 2007, 1933VP – Valid VP Bacillus farraginis Scheldeman et al. 2004b, 1361 publication: Validation List no. 117 – Effective publication: Bacillus foraminis Tiago et al. 2006c, 2573VP Pérez-Ibarra et al. (2007) APPENDIX 1 1331

Bacillus velezensis Ruiz-García et al. 2005, 194VP Bradyrhizobium betae Rivas et al. 2004f, 1274VP Bacillus vietnamensis Noguchi et al. 2004, 2119VP Bradyrhizobium canariense Vinuesa et al. 2005, 573VP Bacillus vireti Heyrman et al. 2004a, 54VP Brevibacill\us ginsengisoli Baek et al. 2006, 2667VP Bacillus wakoensis Nogi et al. 2005b, 2312VP Brevibacillus levickii Allan et al. 2005, 1048VP Bacteriovorax litoralis Baer et al. 2004, 1015VP Brevibacillus limnophilus Goto et al. 2004, 426VP Bacteriovorax marinus Baer et al. 2004, 1015VP Brevibacterium antiquum Gavrish et al. 2005, 1VP – Valid publica- Bacteroides barnesiae Lan et al. 2006, 2857VP tion: Validation List no. 101 – Effective publication: Gavrish et al. (2004) Bacteroides cellulosilyticus Robert et al. 2007, 1519VP Brevibacterium aurantiacum Gavrish et al. 2005, 1VP – Valid publi- Bacteroides coprocola Kitahara et al. 2005, 2146VP cation: Validation List no. 101 – Effective publication: Gavr- VP Bacteroides coprophilus Hayashi et al. 2007a, 1325 ish et al. (2004) VP Bacteroides coprosuis Whitehead et al. 2005, 2517 Brevibacterium celere Ivanova et al. 2004c, 2110VP VP Bacteroides dorei Bakir et al. 2006c, 1642 Brevibacterium permense Gavrish et al. 2005, 1VP – Valid publica- Bacteroides finegoldii Bakir et al. 2006b, 934VP tion: Validation List no. 101 – Effective publication: Gavrish Bacteroides gallinarum Lan et al. 2006, 2857VP et al. (2004) VP Bacteroides goldsteinii Song et al. 2006, 499VP – Valid publica- Brevibacterium picturae Heyrman et al. 2004b, 1540 tion: Validation List no. 108 – Effective publication: Y. Song Brevibacterium samyangense S.D. Lee 2006e, 1891VP et al. (2005) Brevibacterium sanguinis Wauters et al. 2004, 1425VP – Valid publi- Bacteroides intestinalis Bakir et al. 2006a, 153VP cation: Validation List no. 99 – Effective publication: Wauters Bacteroides massiliensis Fenner et al. 2005, 1336VP et al. (2004) Bacteroides nordii Song et al. 2005, 983VP – Valid publication: Brevundimonas aveniformis Ryu et al. 2007a, 1564VP Validation List no. 103 – Effective publication: Y.L. Song et Brevundimonas kwangchunensis J.H. Yoon et al. 2006e, 616VP al. (2004) Brevundimonas lenta J.H. Yoon et al. 2007ix, 2239VP VP Bacteroides plebeius Kitahara et al. 2005, 2146 Brevundimonas mediterranea Fritz et al. 2005, 484VP VP Bacteroides salanitronis Lan et al. 2006, 2857 Brevundimonas nasdae Y. Li et al. 2004a, 824VP VP Bacteroides salyersiae corrig. Song et al. 2005, 983 – Valid pub- Brevundimonas terrae J.H. Yoon et al. 2006c, 2918VP lication: Validation List no. 103 – Effective publication: Y.L. Song et al. (2004) Brooklawnia cerclae Rainey et al. 2006 (authorship reads Rainey, da Costa and Moe), 1981VP – Valid publication: H.S. Bae et VP Balneimonas flocculans corrig. Takeda et al. 2004, 631 – Valid al. (2006a) publication: Validation List no. 97 – Effective publication: VP Takeda et al. (2004) Brucella ceti Foster et al. 2007, 2691 VP Balneola vulgaris Urios et al. 2006, 1886VP Brucella pinnipedialis Foster et al. 2007, 2691 VP Barnesiella viscericola Sakamoto et al. 2007b, 345VP Bryantella formatexigens Wolin et al. 2004, 1 – Valid publication: Val- idation List no. 95 – Effective publication: Wolin et al. (2003) Bartonella chomelii Maillard et al. 2004, 219VP The name Bryantella formatexigens Wolin et al. 2004 is illegiti- Belliella baltica Brettar et al. 2004, 69VP mate because the genus name is illegitimate (see above Bryan- Bellilinea caldifistulae Yamada et al. 2007, 2302VP tella Wolin et al. 2004, 1VP). Belnapia moabensis Reddy et al. 2006, 56VP Burkholderia bryophila Vandamme et al. 2007, 2233VP Bifidobacterium psychraerophilum Simpson et al. 2004, 404VP Burkholderia dolosa Vermis et al. 2004, 691VP Bizionia algoritergicola Bowman and Nichols 2005, 1483VP Burkholderia endofungorum Partida-Martinez et al. 2007, 2589VP Bizionia gelidisalsuginis Bowman and Nichols 2005, 1482VP Burkholderia ferrariae Valverde et al. 2006a, 2424VP VP Bizionia myxarmorum Bowman and Nichols 2005, 1483 Burkholderia ginsengisoli H.B. Kim et al. 2006, 2531VP VP Bizionia paragorgiae Nedashkovskaya et al. 2005g, 377 Burkholderia megapolitana Vandamme et al. 2007, 2232VP VP Bizionia saleffrena Bowman and Nichols 2005, 1482 Burkholderia mimosarum W.M. Chen et al. 2006, 1851VP VP Blastococcus jejuensis S.D. Lee 2006g, 2395 Burkholderia nodosa W.M. Chen et al. 2007, 1058VP VP Blastococcus saxobsidens Urzì et al. 2004, 258 Burkholderia oklahomensis Glass et al. 2006, 2175VP VP Borrelia spielmanii Richter et al. 2006, 880 Burkholderia phenoliruptrix Coenye et al. 2005, 547VP – Valid pub- Borrelia turcica Güner et al. 2004, 1651VP lication: Validation List no. 102 – Effective publication: Coenye Bowmanella denitrificans Jean et al. 2006a, 2465VP et al. (2004a) Brachybacterium phenoliresistens J.H. Chou et al. 2007c, 2677VP Burkholderia phytofirmans Sessitsch et al. 2005, 1190VP Brachybacterium zhongshanense G. Zhang et al. 2007, 2523VP Burkholderia rhizoxinica Partida-Martinez et al. 2007, 2587VP 1332 APPENDIX 1

Burkholderia silvatlantica Perin et al. 2006, 1935VP Chitinophaga ginsengisegetis H.G. Lee et al. 2007, 1398VP Burkholderia soli Yoo et al. 2007a, 123VP Chitinophaga ginsengisoli H.G. Lee et al. 2007, 1399VP Burkholderia terrae H.C. Yang et al. 2006b, 456VP Chitinophaga skermanii Kämpfer et al. 2006k, 2226VP Burkholderia tropica Reis et al. 2004, 2161VP Chitinophaga terrae M.K. Kim and Jung 2007, 1723VP Burkholderia unamae Caballero-Mellado et al. 2004, 1170VP Chondromyces robustus Reichenbach 2007, 893VP – Valid publica- Burkholderia xenovorans Goris et al. 2004, 1680VP tion: Validation List no. 115 – Effective publication: Reichen- bach (2005g) Caenispirillum bisanense J.H. Yoon et al. 2007xvi, 1219VP Chromobacterium subtsugae Martin et al. 2007, 997VP Caldalkalibacillus thermarum Xue et al. 2006, 1220VP Chromohalobacter japonicus Sánchez-Porro et al. 2007, 2265VP Caldimonas taiwanensis W.M. Chen et al. 2005, 1743VP – Valid publication: Validation List no. 105 – Effective publication: Chromohalobacter nigrandesensis Prado et al. 2006, 650VP W.M. Chen et al. (2005) Chromohalobacter salarius Aguilera et al. 2007, 1240VP Caminibacter mediatlanticus Voordeckers et al. 2005, 777VP Chromohalobacter sarecensis Quillaguamán et al. 2004a, 1925VP Caminibacter profundus Miroshnichenko et al. 2004, 44VP Chryseobacterium caeni Quan et al. 2007, 143VP Campylobacter canadensis Inglis et al. 2007, 2642VP Chryseobacterium daecheongense K.K. Kim et al. 2005a, 136VP Campylobacter insulaenigrae Foster et al. 2004, 2371VP Chryseobacterium daeguense J.H. Yoon et al. 2007xv, 1358VP Carboxydocella sporoproducens Slepova et al. 2006, 799VP Chryseobacterium flavum Zhou et al. 2007a, 1767VP Cardiobacterium valvarum Han et al. 2004, 1425VP – Valid pub- Chryseobacterium formosense C.C. Young et al. 2005, 426VP lication: Validation List no. 99 – Effective publication: Han Chryseobacterium haifense Hantsis-Zacharov and Halpern 2007, et al. (2004) 2347VP Carnobacterium pleistocenium Pikuta et al. 2005, 477VP Chryseobacterium hispanicum Gallego et al. 2006b, 1591VP Castellaniella denitrificans Kämpfer et al. 2006d, 818VP Chryseobacterium hominis Vaneechoutte et al. 2007, 2625VP Catellatospora bangladeshensis Ara and Kudo 2006, 399VP Chryseobacterium luteum Behrendt et al. 2007b, 1883VP Catellatospora chokoriensis Ara and Kudo 2006, 397VP Chryseobacterium miricola Li et al. 2004, 307VP – Valid publication: Catellatospora coxensis Ara and Kudo 2006, 398VP Validation List no. 96 – Effective publication: Y. Li et al. (2003) Catellibacterium nectariphilum Tanaka et al. 2004, 958VP Chryseobacterium piscium de Beer et al. 2006, 1321VP VP Catellicoccus marimammalium Lawson et al. 2006, 431 Chryseobacterium shigense Shimomura et al. 2005, 1905VP VP Catenulispora acidiphila Busti et al. 2006, 1745 Chryseobacterium soldanellicola M.S. Park et al. 2006, 436VP VP Catenulispora rubra Tamura et al. 2007b, 2273 Chryseobacterium taeanense M.S. Park et al. 2006, 436VP VP Cellulomonas bogoriensis B.E. Jones et al. 2005, 1713 Chryseobacterium taichungense F.T. Shen et al. 2005, 1302VP VP Cellulomonas composti M.S. Kang et al. 2007, 1259 Chryseobacterium taiwanense Tai et al. 2006, 1774VP VP Cellulomonas denverensis Brown et al. 2005, 1395 – Valid pub- Chryseobacterium vrystaatense de Beer et al. 2005, 2151VP lication: Validation List no. 104 – Effective publication: J.M. Chryseobacterium wanjuense Weon et al. 2006c, 1502VP Brown et al. (2005) VP Cellulomonas terrae D.S. An et al. 2005b, 1708VP Citreicella thiooxidans Sorokin et al. 2006, 1 – Valid publication: Vali- dation List no. 107 – Effective publication: Sorokin et al. (2005a) Cellulomonas xylanilytica Rivas et al. 2004b, 535VP Citreimonas salinaria Choi and Cho 2006, 2801VP Cellulophaga pacifica Nedashkovskaya et al. 2004e, 611VP Citricoccus alkalitolerans W.J. Li et al. 2005c, 88VP Cellulosimicrobium funkei J.M. Brown et al. 2006, 804VP Cloacibacterium normanense Allen et al. 2006, 1314VP Cellulosimicrobium terreum J.H. Yoon et al. 2007xxv, 2496VP Clostridium aciditolerans Y.J. Lee et al. 2007b, 314VP Cerasibacillus quisquiliarum Nakamura et al. 2004, 1067VP Clostridium aestuarii S. Kim et al. 2007, 1317VP Cerasicoccus arenae J. Yoon et al. 2007c, 2070VP Clostridium aldenense Warren et al. 2007, 893VP – Valid publication: Vali- Chimaereicella alkaliphila Tiago et al. 2006, 925VP – Valid publica- dation List no. 115 – Effective publication: Warren et al. (2006) tion: Validation List no. 109 – Effective publication: Tiago et al. VP (2006a) Clostridium alkalicellulosi corrig. Zhilina et al. 2006, 925 – Valid publication: Validation List no. 109 – Effective publication: Chimaereicella boritolerans Ahmed et al. 2007c, 991VP Zhilina et al. (2005a) Chitinibacter tainanensis Chern et al. 2004, 1390VP Clostridium asparagiforme Mohan et al. 2007, 1933VP – Valid publi- Chitinilyticum aquatile S.C. Chang et al. 2007, 2858VP cation: Validation List no. 117 – Effective publication: Mohan Chitinimonas koreensis B.Y. Kim et al. 2006d, 1762VP et al. (2006) Chitinimonas taiwanensis S.C. Chang et al. 2004, 1005VP – Valid Clostridium bartlettii Song et al. 2004, 1425VP – Valid publica- publication: Validation List no. 98 – Effective publication: tion: Validation List no. 99 – Effective publication: Y.L. Song S.C. Chang et al. (2004) et al. (2004b) APPENDIX 1 1333

Clostridium carboxidivorans Liou et al. 2005, 2089VP Crabtreella saccharophila Xie and Yokota 2006a, 623VP Clostridium citroniae Warren et al. 2007, 893VP – Valid publica- Crabtreella saccharophila Xie and Yokota 2006a is a later homo- tion: Validation List no. 115 – Effective publication: Warren typic synonym of Shinella zoogloeoides D.S. An et al. 2006a et al. (2006) Cryobacterium psychrotolerans D.C. Zhang et al. 2007, 868VP VP Clostridium drakei Liou et al. 2005, 2089 Cryptanaerobacter phenolicus Juteau et al. 2005, 249VP VP Clostridium ganghwense S. Kim et al. 2006, 693 Cupriavidus laharis Sato et al. 2006, 977VP VP Clostridium glycyrrhizinilyticum Sakuma et al. 2006, 2507 – Valid Cupriavidus pinatubonensis Sato et al. 2006, 977VP publication: Validation List no. 112 – Effective publication: Curtobacterium ammoniigenes Aizawa et al. 2007, 1451VP Sakuma et al. (2006) Curvibacter gracilis Ding and Yokota 2004, 2228VP Clostridium jejuense Jeong et al. 2004, 1467VP Cyclobacterium amurskyense Nedashkovskaya et al. 2005e, 2392VP Clostridium lundense Cirne et al. 2006, 627VP Cyclobacterium lianum Ying et al. 2006, 2929VP Clostridium nitrophenolicum Suresh et al. 2007b, 1889VP Cystobacter armeniaca Reichenbach 2007, 893VP – Valid publica- Clostridium saccharogumia Clavel et al. 2007, 893VP – Valid publi- tion: Validation List no. 115 – Effective publication: Reichen- cation: Validation List no. 115 – Effective publication: Clavel bach (2005d) et al. (2007) Cystobacter badius Reichenbach 2007, 893VP – Valid publication: Clostridium schirmacherense Alam et al. 2006, 719VP Validation List no. 115 – Effective publication: Reichenbach VP Clostridium straminisolvens S. Kato et al. 2004, 2046 (2005d) VP Cohnella hongkongensis Kämpfer et al. 2006g, 784 Cystobacter miniatus Reichenbach 2007, 893VP – Valid publica- Cohnella laeviribosi E.A. Cho et al. 2007, 2905VP tion: Validation List no. 115 – Effective publication: Reichen- Cohnella thermotolerans Kämpfer et al. 2006g, 784VP bach (2005d) VP Collimonas fungivorans De Boer et al. 2004, 863VP Cystobacter velatus Reichenbach 2007, 893 – Valid publication: Validation List no. 115 – Effective publication: Reichenbach Colwellia aestuarii Jung et al. 2006b, 37VP (2005d) Colwellia piezophila Nogi et al. 2004, 1630VP Dechloromonas denitrificans Horn et al. 2005, 1262VP Comamonas badia Tago and Yokota 2005, 983VP – Valid publica- Dechloromonas hortensis Wolterink et al. 2005, 2067VP tion: Validation List no. 103 – Effective publication: Tago and VP Yokota (2004) Deefgea rivuli Stackebrandt et al. 2007, 643 VP Comamonas odontotermitis J.H. Chou et al. 2007d, 889VP Defluviicoccus vanus corrig. Maszenan et al. 2005a, 2109 VP Conchiformibius kuhniae corrig. Xie and Yokota 2005, 1395VP – Deinococcus apachensis Rainey and da Costa 2005, 2235 – Valid Valid publication: Validation List no. 104 – Effective publica- publication: Validation List no. 106 – Effective publication: tion: Xie and Yokota (2005a) Rainey and da Costa (2005) VP Coraliomargarita akajimensis J. Yoon et al. 2007f, 962VP Deinococcus cellulosilyticus Weon et al. 2007e, 1687 VP Corallococcus macrosporus Reichenbach 2007, 893VP – Valid Deinococcus deserti de Groot et al. 2005, 2445 publication: Validation List no. 115 – Effective publication: Deinococcus ficus W.A. Lai et al. 2006, 790VP Reichenbach (2005b) Deinococcus frigens Hirsch et al. 2006, 925VP – Valid publica- Corynebacterium caspium Collins et al. 2004b, 926VP tion: Validation List no. 109 – Effective publication: Hirsch Corynebacterium ciconiae Fernández-Garayzábal et al. 2004, et al. (2004a) 2194VP Deinococcus hohokamensis Rainey and da Costa 2005, 2235VP – Corynebacterium halotolerans H.H. Chen et al. 2004, 781VP Valid publication: Validation List no. 106 – Effective publica- tion: Rainey and da Costa (2005) Corynebacterium hansenii Renaud et al. 2007, 1115VP Deinococcus hopiensis Rainey and da Costa 2005, 2235VP – Valid VP Corynebacterium nigricans Shukla et al. 2004, 1 – Valid publica- publication: Validation List no. 106 – Effective publication: tion: Validation List no. 95 – Effective publication: Shukla et Rainey and da Costa (2005) al. (2003) Deinococcus indicus Suresh et al. 2004b, 459VP Corynebacterium resistens Otsuka et al. 2005, 2235VP – Valid publi- VP cation: Validation List no. 106 – Effective publication: Otsuka Deinococcus maricopensis Rainey and da Costa 2005, 2235 – Valid et al. (2005) publication: Validation List no. 106 – Effective publication: Rainey and da Costa (2005) Corynebacterium tuberculostearicum Feurer et al. 2004, 1059VP Deinococcus marmoris Hirsch et al. 2006, 925VP – Valid publica- VP Corynebacterium tuscaniense corrig. Riegel et al. 2006, 2025 – tion: Validation List no. 109 – Effective publication: Hirsch Valid publication: Validation List no. 111 – Effective publica- et al. (2004a) tion: Riegel et al. (2006) Deinococcus mumbaiensis Shashidhar and Bandekar 2006, 925VP – VP Corynebacterium ureicelerivorans Yassin 2007, 1202 Valid publication: Validation List no. 109 – Effective publica- Costertonia aggregata K.K. Kwon et al. 2006c, 1352VP tion: Shashidhar and Bandekar (2006) 1334 APPENDIX 1

Deinococcus navajonensis Rainey and da Costa 2005, 2235VP – Desulfothermus okinawensis Nunoura et al. 2007b, 2363VP Valid publication: Validation List no. 106 – Effective publica- Desulfotignum toluenicum Ommedal and Torsvik 2007, 2868VP tion: Rainey and da Costa (2005) Desulfotomaculum arcticum Vandieken et al. 2006b, 689VP Deinococcus papagonensis Rainey and da Costa 2005, 2235VP – Desulfotomaculum carboxydivorans Parshina et al. 2005, 2164VP Valid publication: Validation List no. 106 – Effective publica- tion: Rainey and da Costa (2005) Desulfotomaculum thermosubterraneum Kaksonen et al. 2006, 2606VP Deinococcus peraridilitoris Rainey et al. 2007, 1410VP Desulfovermiculus halophilus Belyakova et al. 2007, 1371VP – Valid Deinococcus pimensis Rainey and da Costa 2005, 2235VP – Valid publication: Validation List no. 116 – Effective publication: publication: Validation List no. 106 – Effective publication: Belyakova et al. (2006) Rainey and da Costa (2005) Desulfovibrio alaskensis Feio et al. 2004, 1751VP Deinococcus saxicola Hirsch et al. 2006, 925VP – Valid publica- tion: Validation List no. 109 – Effective publication: Hirsch Desulfovibrio alkalitolerans Abildgaard et al. 2006, 1023VP et al. (2004a) Desulfovibrio bastinii Magot et al. 2004, 1696VP Deinococcus sonorensis Rainey and da Costa 2005, 2236VP – Valid Desulfovibrio bizertensis Haouari et al. 2006, 2912VP publication: Validation List no. 106 – Effective publication: Desulfovibrio ferrireducens Vandieken et al. 2006a, 684VP Rainey and da Costa (2005) Desulfovibrio frigidus Vandieken et al. 2006a, 684VP Deinococcus yavapaiensis Rainey and da Costa 2005, 2236VP – Valid VP publication: Validation List no. 106 – Effective publication: Desulfovibrio gracilis Magot et al. 2004, 1696 Rainey and da Costa (2005) Desulfovibrio marinus Ben Dhia Thabet et al. 2007, 2169VP Deinococcus yunweiensis Y.Q. Zhang et al. 2007b, 373VP Desulfovibrio putealis Basso et al. 2005, 104VP Demequina aestuarii Yi et al. 2007b, 154VP Desulfovirgula thermocuniculi Kaksonen et al. 2007a, 101VP Denitratisoma oestradiolicum Fahrbach et al. 2006, 1550VP Desulfurispora thermophila Kaksonen et al. 2007b, 1092VP Dermacoccus abyssi Pathom-aree et al. 2006b, 1235VP Desulfurobacterium atlanticum L’Haridon et al. 2006, 2850VP Dermacoccus barathri Pathom-aree et al. 2006c, 2306VP Desulfurobacterium pacificum L’Haridon et al. 2006, 2850VP Dermacoccus profundi Pathom-aree et al. 2006c, 2306VP Desulfurococcus fermentans Perevalova et al. 2005, 998VP Desulfatibacillum aliphaticivorans Cravo-Laureau et al. 2004a, 81VP Desulfuromonas svalbardensis Vandieken et al. 2006c, 1138VP Desulfatibacillum alkenivorans Cravo-Laureau et al. 2004b, Desulfuromusa ferrireducens Vandieken et al. 2006c, 1138VP 1641VP Dethiosulfatibacter aminovorans Takii et al. 2007, 2324VP Desulfatiferula olefinivorans Cravo-Laureau et al. 2007, 2701VP Devosia insulae J.H. Yoon et al. 2007xvii, 1313VP Desulfitibacter alkalitolerans M.B. Nielsen et al. 2006, 2835VP Devosia limi Vanparys et al. 2005b, 1998VP Desulfobacterium niacini Kuever et al. 2006, 2VP – Valid publica- Devosia soli Yoo et al. 2006, 2691VP tion: Validation List no. 107 – Effective publication: Kuever Devosia subaequoris S.D. Lee 2007c, 2214VP et al. (2005l) Dialister micraerophilus Jumas-Bilak et al. 2005, 2476VP Desulfobacterium vacuolatum Kuever et al. 2006, 2VP – Valid publi- VP cation: Validation List no. 107 – Effective publication: Kuever Dialister propionicifaciens Jumas-Bilak et al. 2005, 2477 et al. (2005l) Dickeya dadantii Samson et al. 2005, 1424VP Desulfobulbus japonicus D. Suzuki et al. 2007b, 853VP Dickeya dianthicola Samson et al. 2005, 1424VP Desulfofaba fastidiosa Abildgaard et al. 2004, 398VP Dickeya dieffenbachiae Samson et al. 2005, 1425VP Desulfoglaeba alkanexedens Davidova et al. 2006, 2741VP Dickeya zeae Samson et al. 2005, 1425VP Desulfohalobium utahense Jakobsen et al. 2006, 2068VP Dietzia cinnamea Yassin et al. 2006, 644VP Desulfomicrobium thermophilum Thevenieau et al. 2007, 2449VP – Dietzia kunjamensis Mayilraj et al. 2006e, 1670VP Valid publication: Validation List no. 118 – Effective publica- Dinoroseobacter shibae Biebl et al. 2005a, 1095VP tion: Thevenieau et al. (2007) Dokdonella fugitiva Cunha et al. 2006, 1459VP – Valid publica- VP Desulfonatronum cooperativum Zhilina et al. 2005b, 1004 tion: Validation List no. 110 – Effective publication: Cunha Desulfopila aestuarii D. Suzuki et al. 2007a, 524VP et al. (2006) Desulfosarcina ovata Kuever et al. 2006, 2VP – Valid publication: Dokdonella koreensis J.H. Yoon et al. 2006g, 149VP Validation List no. 107 – Effective publication: Kuever et al. Dokdonia donghaensis J.H. Yoon et al. 2005h, 2326VP (2005m) Donghaeana dokdonensis J.H. Yoon et al. 2006b, 190VP Desulfosporosinus lacus Ramamoorthy et al. 2006, 2734VP Donghicola eburneus J.H. Yoon et al. 2007xiii, 75VP Desulfothermus naphthae Kuever et al. 2006, 2VP – Valid publica- Duganella violaceinigra W.J. Li et al. 2004f, 1813VP tion: Validation List no. 107 – Effective publication: Kuever et al. (2005h) Dyadobacter beijingensis Dong et al. 2007, 864VP APPENDIX 1 1335

Dyadobacter crusticola Reddy and Garcia-Pichel 2005, 1298VP Erythrobacter seohaensis J.H. Yoon et al. 2005w, 74VP Dyadobacter ginsengisoli Q.M. Liu et al. 2006, 1942VP Erythrobacter vulgaris Ivanova et al. 2006, 499VP – Valid publica- Dyadobacter hamtensis Chaturvedi et al. 2005, 2114VP tion: Validation List no. 108 – Effective publication: Ivanova et al. (2005a) Dyadobacter koreensis Baik et al. 2007a, 1230VP Ethanoligenens harbinense Xing et al. 2006, 759VP Dyella japonica Xie and Yokota 2005c, 756VP Exiguobacterium aestuarii I.G. Kim et al. 2005, 888VP Dyella koreensis D.S. An et al. 2005a, 1628VP Exiguobacterium artemiae López-Cortés et al. 2006, 1459VP – Valid Dyella yeojuensis B.Y. Kim et al. 2006c, 2081VP publication: Validation List no. 110 – Effective publication: Echinicola pacifica Nedashkovskaya et al. 2006b, 955VP López-Cortés et al. (2006b) Echinicola vietnamensis Nedashkovskaya et al. 2007a, 763VP Exiguobacterium indicum Chaturvedi and Shivaji 2006, 2769VP Ectothiorhodosinus mongolicus corrig. Gorlenko et al. 2007, 1371VP Exiguobacterium marinum I.G. Kim et al. 2005, 888VP – Valid publication: Validation List no. 116 – Effective publi- Exiguobacterium mexicanum López-Cortés et al. 2006, 1459VP – cation: Gorlenko et al. (2004a) Valid publication: Validation List no. 110 – Effective publica- Effluviibacter roseus Suresh et al. 2006, 1706VP tion: López-Cortés et al. (2006b) Eggerthella hongkongensis Lau et al. 2006, 2025VP – Valid publi- Exiguobacterium oxidotolerans Yumoto et al. 2004d, 2016VP cation: Validation List no. 111 – Effective publication: S.K.P. Exiguobacterium profundum Crapart et al. 2007, 289VP Lau et al. (2004) Exiguobacterium sibiricum Rodrigues et al. 2006, 2507VP – Valid Eggerthella sinensis Lau et al. 2006, 2025VP – Valid publication: Valida- publication: Validation List no. 112 – Effective publication: tion List no. 111 – Effective publication: S.K.P. Lau et al. (2004) Rodrigues et al. (2006) Emticicia oligotrophica Saha and Chakrabarti 2006a, 993VP Fabibacter halotolerans S.C. Lau et al. 2006b, 1062VP Endozoicomonas elysicola Kurahashi and Yokota 2007, 1371VP – Fangia hongkongensis K.W. Lau et al. 2007, 2669VP Valid publication: Validation List no. 116 – Effective publica- VP tion: Kurahashi and Yokota (2007) Fastidiosipila sanguinis Falsen et al. 2005, 856 VP Enterobacter helveticus Stephan et al. 2007, 825VP Ferrimonas futtsuensis T. Nakagawa et al. 2006, 2644 VP Enterobacter ludwigii Hoffmann et al. 2005, 2236VP – Valid publi- Ferrimonas kyonanensis T. Nakagawa et al. 2006, 2644 cation: Validation List no. 106 – Effective publication: Hoff- Ferrimonas marina Katsuta et al. 2005, 1854VP mann et al. (2005b) Ferrimonas senticii Campbell et al. 2007, 2672VP VP Enterobacter radicincitans Kämpfer et al. 2005, 1396 – Valid Fervidobacterium changbaicum Cai et al. 2007, 2335VP publication: Validation List no. 104 – Effective publication: Flagellimonas eckloniae S.S. Bae et al. 2007, 1051VP Kämpfer et al. (2005b) Flammeovirga kamogawensis Hosoya and Yokota 2007b, 1328VP Enterobacter turicensis Stephan et al. 2007, 824VP Flammeovirga yaeyamensis M. Takahashi et al. 2006, 2099VP Enterococcus aquimarinus Švec et al. 2005a, 2186VP Flaviramulus basaltis Einen and Øvreås 2006, 2460VP Enterococcus caccae Carvalho et al. 2006, 1507VP Flavisolibacter ginsengisoli M.H. Yoon and Im 2007, 1838VP Enterococcus camelliae Sukontasing et al. 2007, 2153VP Flavisolibacter ginsengiterrae M.H. Yoon and Im 2007, 1837VP Enterococcus canintestini Naser et al. 2005, 2181VP Flavobacterium antarcticum Yi et al. 2005a, 640VP Enterococcus devriesei Švec et al. 2005b, 2482VP Flavobacterium aquidurense Cousin et al. 2007, 247VP Enterococcus hermanniensis Koort et al. 2004, 1826VP Flavobacterium ceti Vela et al. 2007a, 2607VP Enterococcus italicus Fortina et al. 2004, 1720VP Flavobacterium croceum M. Park et al. 2006, 2445VP Enterococcus saccharominimus Vancanneyt et al. 2004c, 2178VP Flavobacterium cucumis Weon et al. 2007j, 1596VP Enterococcus silesiacus Švec et al. 2006, 580VP Flavobacterium daejeonense B.Y. Kim et al. 2006b, 1647VP Enterococcus termitis Švec et al. 2006, 580VP Flavobacterium defluvii M. Park et al. 2007, 235VP Enterovibrio coralii Thompson et al. 2005, 916VP Flavobacterium degerlachei Van Trappen et al. 2004d, 89VP Epilithonimonas tenax O’Sullivan et al. 2006, 177VP Flavobacterium denitrificans Horn et al. 2005, 1263VP Erwinia papayae Gardan et al. 2004, 112VP Flavobacterium filum Ryu et al. 2007b, 2028VP Erwinia tasmaniensis Geider et al. 2006, 2942VP Flavobacterium frigidimaris Nogi et al. 2005, 1743VP – Valid pub- VP Erwinia toletana Rojas et al. 2004, 2220 lication: Validation List no. 105 – Effective publication: Nogi Erysipelothrix inopinata Verbarg et al. 2004, 224VP et al. (2005a) Erythrobacter aquimaris J.H. Yoon et al. 2004b, 1984VP Flavobacterium frigoris Van Trappen et al. 2004d, 90VP Erythrobacter gaetbuli J.H. Yoon et al. 2005w, 74VP Flavobacterium fryxellicola Van Trappen et al. 2005b, 771VP Erythrobacter luteolus J.H. Yoon et al. 2005a, 1169VP Flavobacterium glaciei D.C. Zhang et al. 2006a, 2924VP 1336 APPENDIX 1

Flavobacterium granuli Aslam et al. 2005a, 750VP Giesbergeria kuznetsovii Grabovich et al. 2006, 573VP Flavobacterium hercynium Cousin et al. 2007, 248VP Giesbergeria voronezhensis Grabovich et al. 2006, 573VP Flavobacterium indicum Saha and Chakrabarti 2006c, 2620VP Gillisia hiemivivida Bowman and Nichols 2005, 1484VP Flavobacterium micromati Van Trappen et al. 2004d, 89VP Gillisia illustrilutea Bowman and Nichols 2005, 1484VP Flavobacterium psychrolimnae Van Trappen et al. 2005b, 771VP Gillisia limnaea Van Trappen et al. 2004e, 447VP Flavobacterium saliperosum Z.W. Wang et al. 2006, 441VP Gillisia mitskevichiae Nedashkovskaya et al. 2005d, 322VP Flavobacterium segetis Yi and Chun 2006b, 1243VP Gillisia myxillae O.O. Lee et al. 2006a, 1797VP Flavobacterium soli J.H. Yoon et al. 2006i, 999VP Gillisia sandarakina Bowman and Nichols 2005, 1484VP Flavobacterium suncheonense B.Y. Kim et al. 2006b, 1648VP Gilvibacter sediminis Khan et al. 2007b, 268VP Flavobacterium terrae Weon et al. 2007j, 1596VP Glaciecola agarilytica Yong et al. 2007, 953VP Flavobacterium terrigena J.H. Yoon et al. 2007viii, 949VP Glaciecola chathamensis Matsuyama et al. 2006, 2886VP Flavobacterium weaverense Yi and Chun 2006b, 1242VP Glaciecola nitratireducens Baik et al. 2006a, 2187VP Flectobacillus lacus Hwang and Cho 2006, 1200VP Glaciecola polaris Van Trappen et al. 2004c, 1769VP Fluviicola taffensis O’Sullivan et al. 2005, 2193VP Glaciecola psychrophila D.C. Zhang et al. 2006b, 2868VP Formosa agariphila Nedashkovskaya et al. 2006d, 166VP Gluconacetobacter kombuchae Dutta and Gachhui 2007, 356VP Formosa algae Ivanova et al. 2004a, 707VP Gluconacetobacter nataicola Lisdiyanti et al. 2006, 2109VP Frondicola australicus L. Zhang et al. 2007b, 1181VP Gluconacetobacter rhaeticus Dellaglio et al. 2005a, 2369VP The name Frondicola australicus L. Zhang et al. 2007b is illegit- Gluconacetobacter saccharivorans Lisdiyanti et al. 2006, 2108VP imate because it is placed in an illegitimate genus (see above Gluconacetobacter swingsii Dellaglio et al. 2005a, 2368VP Frondicola L. Zhang et al. 2007b, 1181VP). Gluconobacter thailandicus Tanasupawat et al. 2005, 983VP – Valid VP Fulvivirga kasyanovii Nedashkovskaya et al. 2007d, 1048 publication: Validation List no. 103 – Effective publication: Fusobacterium canifelinum Conrads et al. 2004, 1909VP – Valid Tanasupawat et al. (2004) publication: Validation List no. 100 – Effective publication: Glycomyces algeriensis Labeda and Kroppenstedt 2004, 2345VP Conrads et al. (2004) Glycomyces arizonensis Labeda and Kroppenstedt 2004, 2345VP Gaetbulibacter saemankumensis Jung et al. 2005a, 1848VP Glycomyces lechevalierae Labeda and Kroppenstedt 2004, 2346VP Gaetbulimicrobium brevivitae J.H. Yoon et al. 2006a, 118VP Glycomyces sambucus Q. Gu et al. 2007b, 1996VP Galbibacter mesophilus Khan et al. 2007c, 972VP Gordonia araii A. Kageyama et al. 2006a, 1820VP Gelidibacter gilvus Bowman and Nichols 2005, 1483VP Gordonia defluvii Soddell et al. 2006b, 2267VP Gelidibacter salicanalis Bowman and Nichols 2005, 1484VP Gordonia effusa A. Kageyama et al. 2006a, 1820VP Geoalkalibacter ferrihydriticus Zavarzina et al. 2007, 894VP – Valid Gordonia malaquae Yassin et al. 2007b, 1067VP publication: Validation List no. 115 – Effective publication: Zavarzina et al. (2006) Gordonia otitidis K. Iida et al. 2005, 1874VP Geobacillus debilis Banat et al. 2004, 2199VP Gordonia shandongensis Luo et al. 2007, 607VP Geobacillus gargensis Nazina et al. 2004, 2023VP Gordonia soli F.T. Shen et al. 2006, 2599VP Geobacillus jurassicus Nazina et al. 2005, 983VP – Valid publication: Val- Gracilibacillus boraciitolerans Ahmed et al. 2007b, 800VP idation List no. 103 – Effective publication: Nazina et al. (2005) Gracilibacillus orientalis Carrasco et al. 2006, 602VP Geobacillus lituanicus Kuisiene et al. 2004, 1993VP Gracilibacter thermotolerans Y.J. Lee et al. 2006, 2092VP Geobacillus tepidamans Schäffer et al. 2004, 2366VP Gramella echinicola Nedashkovskaya et al. 2005f, 393VP Geobacter argillaceus Shelobolina et al. 2007, 133VP Gramella portivictoriae S.C. Lau et al. 2005d, 2499VP Geobacter bemidjiensis Nevin et al. 2005, 1671VP Granulibacter bethesdensis Greenberg et al. 2006, 2615VP Geobacter pickeringii Shelobolina et al. 2007, 133VP Granulicoccus phenolivorans Maszenan et al. 2007, 733VP Geobacter psychrophilus Nevin et al. 2005, 1672VP Guggenheimella bovis Wyss et al. 2005, 669VP Geopsychrobacter electrodiphilus Holmes et al. 2005, 547VP – Valid Gulbenkiania mobilis Vaz-Moreira et al. 2007b, 1111VP publication: Validation List no. 102 – Effective publication: Gulosibacter molinativorax Manaia et al. 2004, 787VP Holmes et al. (2004b) Haematobacter missouriensis Helsel et al. 2007, 1371VP – Valid VP Georgenia ruanii W.J. Li et al. 2007, 1426 publication: Validation List no. 116 – Effective publication: Geosporobacter subterraneus Klouche et al. 2007, 1760VP Helsel et al. (2007) Geothermobacter ehrlichii Kashefi et al. 2005, 547VP – Valid publica- Hemophilus pittmaniae Nørskov-Lauritsen et al. 2005, 455VP tion: Validation List no. 102 – Effective publication: Kashefi Hahella ganghwensis Baik et al. 2005, 683VP et al. (2003) APPENDIX 1 1337

Haladaptatus paucihalophilus Savage et al. 2007, 23VP Halomonas janggokensis K.K. Kim et al. 2007, 678VP Halalkalibacillus halophilus Echigo et al. 2007, 1083VP Halomonas koreensis J.M. Lim et al. 2004a, 2041VP Halalkalicoccus jeotgali Roh et al. 2007b, 2297VP Halomonas kribbensis Jeon et al. 2007, 2196VP Halalkalicoccus tibetensis Xue et al. 2005, 2504VP Halomonas neptunia Kaye et al. 2004, 508VP Haloarcula amylolytica Y. Yang et al. 2007, 105VP Halomonas organivorans García et al. 2004, 1726VP Halobacillus aidingensis W.Y. Liu et al. 2005, 1995VP Halomonas saccharevitans X.W. Xu et al. 2007c, 1621VP Halobacillus campisalis J.H. Yoon et al. 2007vi, 2024VP Halomonas salaria K.K. Kim et al. 2007, 680VP Halobacillus dabanensis W.Y. Liu et al. 2005, 1995VP Halomonas shengliensis Y.N. Wang et al. 2007a, 1224VP Halobacillus faecis S.Y. An et al. 2007d, 2478VP Halomonas subterranea X.W. Xu et al. 2007c, 1622VP Halobacillus kuroshimensis Hua et al. 2007, 1246VP Halomonas sulfidaeris Kaye et al. 2004, 508VP Halobacillus locisalis Yoon et al. 2004, 1425VP – Valid publica- Halomonas taeanensis J.C. Lee et al. 2005, 2031VP tion: Validation List no. 99 – Effective publication: J.H. Yoon Halomonas ventosae Martínez-Cánovas et al. 2004c, 735VP et al. (2004) Halopiger xanaduensis Gutiérrez et al. 2007, 1404VP Halobacillus profundi Hua et al. 2007, 1245VP Haloplanus natans Elevi Bardavid et al. 2007, 783VP Halobacillus yeomjeoni J.H. Yoon et al. 2005i, 2416VP Haloquadratum walsbyi Burns et al. 2007, 391VP Halobacterium jilantaiense Y. Yang et al. 2006, 2355VP Halorubrum aidingense Cui et al. 2006b, 1633VP Halobacterium noricense Gruber et al. 2005, 983VP – Valid publica- Halorubrum alkaliphilum Feng et al. 2005, 151VP tion: Validation List no. 103 – Effective publication: Gruber et al. (2004) Halorubrum arcis X.W. Xu et al. 2007b, 1071VP Halobiforma lacisalsi X.W. Xu et al. 2005c, 1951VP Halorubrum ejinorense Castillo et al. 2007b, 2540VP Halochromatium roseum Anil Kumar et al. 2007c, 2112VP Halorubrum ezzemoulense Kharroub et al. 2006b, 1585VP Halococcus hamelinensis Goh et al. 2006, 1328VP Halorubrum lipolyticum Cui et al. 2006b, 1632VP Halococcus qingdaonensis Q.F. Wang et al. 2007b, 603VP Halorubrum litoreum H.L. Cui et al. 2007b, 2206VP Halococcus thailandensis Namwong et al. 2007, 2202VP Halorubrum orientale Castillo et al. 2006c, 2562VP Haloferax larsenii X.W. Xu et al. 2007a, 718VP Halorubrum terrestre Ventosa et al. 2004, 391VP Haloferax lucentense corrig. Gutierrez et al. 2004, 1VP – Valid pub- Halorubrum tibetense Fan et al. 2004, 1215VP lication: Validation List no. 95 – Effective publication: Gutier- Halorubrum xinjiangense Feng et al. 2004, 1791VP rez et al. (2002) Halospina denitrificans Sorokin et al. 2006a, 386VP VP Haloferax prahovense Enache et al. 2007, 395 Halostagnicola larsenii Castillo et al. 2006b, 1521VP Haloferax sulfurifontis Elshahed et al. 2004, 2278VP Halotalea alkalilenta Ntougias et al. 2007b, 1981VP Halolactibacillus halophilus Ishikawa et al. 2005, 2437VP Haloterrigena hispanica Romano et al. 2007, 1501VP Halolactibacillus miurensis Ishikawa et al. 2005, 2437VP Haloterrigena limicola Cui et al. 2006c, 1839VP Halomonas alkaliphila Romano et al. 2007, 1933VP – Valid publica- Haloterrigena longa Cui et al. 2006c, 1838VP tion: Validation List no. 117 – Effective publication: Romano VP et al. (2006a) Haloterrigena saccharevitans X.W. Xu et al. 2005a, 2541 VP Halomonas almeriensis Martínez-Checa et al. 2005, 2010VP Halovibrio denitrificans Sorokin et al. 2006a, 386 Halomonas anticariensis Martínez-Cánovas et al. 2004a, 1330VP According to Rule 28b(2), Halovibrio denitrificans Sorokin et al. 2006a is not validly published (see the Request for an Halomonas arcis X.W. Xu et al. 2007c, 1622VP Opinion by Sorokin and Tindall 2006) Halomonas avicenniae Soto-Ramírez et al. 2007, 903VP Halovivax asiaticus Castillo et al. 2006a, 769VP Halomonas axialensis Kaye et al. 2004, 509VP Halovivax ruber Castillo et al. 2007a, 1026VP Halomonas boliviensis Quillaguamán et al. 2004b, 724VP Helcococcus sueciensis Collins et al. 2004a, 1559VP Halomonas campaniensis Romano et al. 2005, 2236VP – Valid Helicobacter anseris Fox et al. 2006, 2025VP – Valid publication: Val- publication: Validation List no. 106 – Effective publication: idation List no. 111 – Effective publication: Fox et al. (2006) Romano et al. (2005b) Helicobacter brantae Fox et al. 2006, 2025VP – Valid publication: Val- Halomonas denitrificans K.K. Kim et al. 2007, 680VP idation List no. 111 – Effective publication: Fox et al. (2006) Halomonas gomseomensis K.K. Kim et al. 2007, 678VP Helicobacter cetorum Harper et al. 2006, 2025VP – Valid publica- Halomonas gudaonensis Y.N. Wang et al. 2007b, 914VP tion: Validation List no. 111 – Effective publication: Harper Halomonas hydrothermalis Kaye et al. 2004, 509VP et al. (2002) Halomonas indalinina Cabrera et al. 2007, 378VP Helicobacter cynogastricus Van den Bulck et al. 2006, 1563VP 1338 APPENDIX 1

Helicobacter equorum Moyaert et al. 2007, 217VP Idiomarina seosinensis Choi and Cho 2005, 382VP Helicobacter marmotae Fox et al. 2006, 2025VP – Valid publica- Ignicoccus hospitaliz Paper et al. 2007, 807VP tion: Validation List no. 111 – Effective publication: Fox et Ignisphaera aggregans Niederberger et al. 2006, 970VP al. (2002) Isoptericola dokdonensis J.H. Yoon et al. 2006r, 2896VP Helicobacter mastomyrinus Shen et al. 2006, 2025VP – Valid pub- Isoptericola halotolerans Y.Q. Zhang et al. 2005c, 1869VP lication: Validation List no. 111 – Effective publication: Z. Shen et al. (2005) Isoptericola hypogeus Groth et al. 2005, 1718VP Herbaspirillum chlorophenolicum Im et al. 2004a, 854VP Janibacter anophelis Kämpfer et al. 2006i, 391VP Herbaspirillum hiltneri Rothballer et al. 2006, 1347VP Janibacter corallicola Kageyama et al. 2007, 2449VP – Valid pub- lication: Validation List no. 118 – Effective publication: Herbaspirillum putei Ding and Yokota 2004, 2227VP A. Kageyama et al. (2007d) Herbaspirillum rhizosphaerae Jung et al. 2007d, 2287VP Janibacter melonis J.H. Yoon et al. 2004i, 1979VP Herminiimonas aquatilis Kämpfer et al. 2006, 1459VP – Valid Jannaschia cystaugens Adachi et al. 2004, 1691VP publication: Validation List no. 110 – Effective publication: VP Kämpfer et al. (2006b) Jannaschia donghaensis J.H. Yoon et al. 2007xx, 2134 VP Herminiimonas arsenicoxydans Muller et al. 2006, 1768VP Jannaschia rubra Macián et al. 2005b, 651 VP Herminiimonas fonticola Fernandes et al. 2005, 2236VP – Valid Jannaschia seosinensis Choi et al. 2006, 48 publication: Validation List no. 106 – Effective publication: Jeotgalicoccus pinnipedialis Hoyles et al. 2004, 747VP Fernandes et al. (2005) Jiangella gansuensis L. Song et al. 2005, 883VP VP Herminiimonas saxobsidens Lang et al. 2007b, 2621 Jonesia quinghaiensis Schumann et al. 2004, 2183VP VP Hespellia porcina Whitehead et al. 2004, 244 Jonquetella anthropi Jumas-Bilak et al. 2007a, 2747VP VP Hespellia stercorisuis Whitehead et al. 2004, 244 Kaistella koreensis M.K. Kim et al. 2004, 2323VP VP Hoeflea alexandrii Palacios et al. 2006, 1994 Kaistia adipata Im et al. 2005, 983VP – Valid publication: Valida- Hoeflea marina Peix et al. 2005, 1165VP tion List no. 103 – Effective publication: Im et al. (2004c) Hoeflea phototrophica Biebl et al. 2006, 825VP Kaistia granuli H.W. Lee et al. 2007, 2283VP Hongiella halophila Yi and Chun 2004a, 160VP Kangiella aquimarina J.H. Yoon et al. 2004j, 1833VP Hongiella mannitolivorans Yi and Chun 2004a, 160VP Kangiella koreensis J.H. Yoon et al. 2004j, 1833VP Hongiella marincola J.H. Yoon et al. 2004o, 1848VP Kineococcus marinus S.D. Lee 2006d, 1282VP Hongiella ornithinivorans Yi and Chun 2004a, 160VP Kingella potus Lawson et al. 2005, 1743VP – Valid publication: Howardella ureilytica Cook et al. 2007, 2943VP Validation List no. 105 – Effective publication: Lawson et al. (2005d) Humicoccus flavidus J.H. Yoon et al. 2007v, 59VP Kitasatospora arboriphila Groth et al. 2004, 2125VP Humihabitans oryzae A. Kageyama et al. 2007c, 2165VP Kitasatospora gansuensis Groth et al. 2004, 2127VP Hyalangium minutum Reichenbach 2007, 894VP – Valid publica- VP tion: Validation List no. 115 – Effective publication: Reichen- Kitasatospora nipponensis Groth et al. 2004, 2127 bach (2005e) Kitasatospora paranensis Groth et al. 2004, 2128VP Hydrocarboniphaga effusa Palleroni et al. 2004, 1207VP Kitasatospora sampliensis Mayilraj et al. 2006a, 521VP Hydrogenimonas thermophila Takai et al. 2004b, 31VP Kitasatospora terrestris Groth et al. 2004, 2128VP Hydrogenivirga caldilitoris S. Nakagawa et al. 2004a, 2083VP Kitasatospora viridis Z. Liu et al. 2005a, 709VP Hydrogenophaga atypica Kämpfer et al. 2005c, 343VP Klebsiella singaporensis X. Li et al. 2004, 2135VP Hydrogenophaga caeni Chung et al. 2007, 1129VP Klebsiella variicola Rosenblueth et al. 2004, 631VP – Valid publica- Hydrogenophaga defluvii Kämpfer et al. 2005c, 343VP tion: Validation List no. 97 – Effective publication: Rosenblu- eth et al. (2004) Hymenobacter chitinivorans Buczolits et al. 2006, 2077VP Knoellia aerolata Weon et al. 2007d, 2863VP Hymenobacter gelipurpurascens Buczolits et al. 2006, 2077VP Kocuria aegyptia W.J. Li et al. 2006c, 735VP Hymenobacter norwichensis Buczolits et al. 2006, 2077VP Kocuria carniphila Tvrzová et al. 2005a, 140VP Hymenobacter ocellatus Buczolits et al. 2006, 2076VP Kocuria himachalensis Mayilraj et al. 2006c, 1974VP Hymenobacter rigui Baik et al. 2006b, 2191VP Kocuria marina S.B. Kim et al. 2004a, 1619VP Hymenobacter xinjiangensis Q. Zhang et al. 2007, 1754VP Kordia algicida Sohn et al. 2004b, 678VP Idiomarina fontislapidosi Martínez-Cánovas et al. 2004b, 1795VP Kordiimonas gwangyangensis K.K. Kwon et al. 2005, 2036VP Idiomarina homiensis S.W. Kwon et al. 2006, 2232VP Krasilnikovia cinnamomea corrig. Ara and Kudo 2007, 2449VP – Valid VP Idiomarina ramblicola Martínez-Cánovas et al. 2004b, 1796 publication: Validation List no. 118 – Effective publication: Idiomarina salinarum J.H. Yoon et al. 2007i, 2504VP Ara and Kudo (2007a) APPENDIX 1 1339

Kribbella alba Li et al. 2006, 1459VP – Valid publication: Validation Lactobacillus parabrevis Vancanneyt et al. 2006a, 1556VP List no. 110 – Effective publication: W.J. Li et al. (2006b) Lactobacillus paracollinoides K. Suzuki et al. 2004, 116VP VP Kribbella aluminosa Carlsohn et al. 2007b, 1946 Lactobacillus parafarraginis Endo and Okada 2007b, 711VP VP Kribbella antibiotica Li et al. 2004, 1425 – Valid publication: Vali- Lactobacillus rennini Chenoll et al. 2006, 451VP dation List no. 99 – Effective publication: W.J. Li et al. (2004e) Lactobacillus rossiae corrig. Corsetti et al. 2005, 39VP Kribbella jejuensis J. Song et al. 2004, 1347VP Lactobacillus saerimneri Pedersen and Roos 2004, 1367VP Kribbella karoonensis Kirby et al. 2006, 1100VP Lactobacillus satsumensis Endo and Okada 2005, 85VP Kribbella lupini Trujillo et al. 2006a, 410VP Lactobacillus secaliphilus Ehrmann et al. 2007, 748VP Kribbella solani J. Song et al. 2004, 1347VP Lactobacillus siliginis Aslam et al. 2006, 2212VP Kribbella swartbergensis Kirby et al. 2006, 1100VP Lactobacillus sobrius Konstantinov et al. 2006, 31VP Kribbella yunnanensis Li et al. 2006, 1459VP – Valid publication: Vali- VP dation List no. 110 – Effective publication: W.J. Li et al. (2006b) Lactobacillus spicheri Meroth et al. 2004, 631 – Valid publica- VP tion: Validation List no. 97 – Effective publication: Meroth Kribbia dieselivorans Jung et al. 2006a, 2430 et al. (2004) Krokinobacter diaphorus Khan et al. 2006a, 327VP Lactobacillus suntoryeus Cachat and Priest 2005, 33VP Krokinobacter eikastus Khan et al. 2006a, 327VP Lactobacillus thailandensis Tanasupawat et al. 2007, 1371VP – Valid Krokinobacter genikus Khan et al. 2006a, 326VP publication: Validation List no. 116 – Effective publication: Ktedonobacter racemifer corrig. Cavaletti et al. 2007, 433VP – Valid Tanasupawat et al. (2007b) publication: Validation List no. 114 – Effective publication: Lactobacillus ultunensis Roos et al. 2005, 81VP Cavaletti et al. (2006b) Lactobacillus vini Rodas et al. 2006, 516VP Labedella gwakjiensis S.D. Lee 2007d, 2501VP Lactobacillus zymae Vancanneyt et al. 2005b, 619VP Labrenzia alexandrii Biebl et al. 2007, 1105VP Lactonifactor longoviformis Clavel et al. 2007, 894VP – Valid publi- VP Labrys methylaminiphilus Miller et al. 2005, 1252 cation: Validation List no. 115 – Effective publication: Clavel Labrys miyagiensis Islam et al. 2007, 556VP et al. (2007) Labrys neptuniae Y.J. Chou et al. 2007, 579VP Lactovum miscens Matthies et al. 2005, 547VP – Valid publication: Labrys okinawensis Islam et al. 2007, 556VP Validation List no. 102 – Effective publication: Matthies et al. (2004) Lacinutrix copepodicola Bowman and Nichols 2005, 1482VP Lapillicoccus jejuensis S.D. Lee and Lee 2007, 2797VP Lactobacillus acidifarinae Vancanneyt et al. 2005b, 619VP Larkinella insperata Vancanneyt et al. 2006b, 239VP Lactobacillus amylotrophicus Naser et al. 2006d, 2526VP Leadbetterella byssophila Weon et al. 2005, 2299VP Lactobacillus antri Roos et al. 2005, 80VP Lebetimonas acidiphila Takai et al. 2005, 188VP Lactobacillus apodemi Osawa et al. 2006, 1695VP Lechevalieria fradiae J. Zhang et al. 2007, 834VP Lactobacillus camelliae Tanasupawat et al. 2007, 1371VP – Valid VP publication: Validation List no. 116 – Effective publication: Lechevalieria xinjiangensis W. Wang et al. 2007, 2821 Tanasupawat et al. (2007b) Leeia oryzae J.M. Lim et al. 2007a, 1207VP Lactobacillus composti Endo and Okada 2007a, 872VP Leeuwenhoekiella aequorea Nedashkovskaya et al. 2005m, Lactobacillus concavus Tong and Dong 2005, 2201VP 1036VP Lactobacillus crustorum Scheirlinck et al. 2007b, 1466VP Leeuwenhoekiella blandensis Pinhassi et al. 2006, 1492VP Lactobacillus farraginis Endo and Okada 2007b, 711VP Legionella drancourtii La Scola et al. 2004, 703VP Lactobacillus gastricus Roos et al. 2005, 80VP Legionella impletisoli Kuroki et al. 2007, 1933VP – Valid publica- tion: Validation List no. 117 – Effective publication: Kuroki Lactobacillus ghanensis D.S. Nielsen et al. 2007, 1471VP et al. (2007) Lactobacillus hammesii Valcheva et al. 2005, 766VP Legionella yabuuchiae Kuroki et al. 2007, 1933VP – Valid publica- VP Lactobacillus harbinensis Miyamoto et al. 2006, 2 – Valid publi- tion: Validation List no. 117 – Effective publication: Kuroki et cation: Validation List no. 107 – Effective publication: Miya- al. (2007) moto et al. (2005) Leifsonia ginsengi F. Qiu et al. 2007, 407VP Lactobacillus hayakitensis Morita et al. 2007, 2838VP Lentibacillus halodurans Yuan et al. 2007, 487VP Lactobacillus kalixensis Roos et al. 2005, 81VP Lentibacillus halophilus Tanasupawat et al. 2006, 1862VP Lactobacillus namurensis Scheirlinck et al. 2007a, 226VP Lentibacillus juripiscarius Namwong et al. 2005, 319VP Lactobacillus nantensis Valcheva et al. 2006, 589VP Lentibacillus kapialis Pakdeeto et al. 2007, 367VP Lactobacillus oligofermentans Koort et al. 2005, 2236VP – Valid pub- VP lication: Validation List no. 106 – Effective publication: Koort Lentibacillus lacisalsi J.M. Lim et al. 2005c, 1807 et al. (2005) Lentibacillus salarius Jeon et al. 2005a, 1342VP 1340 APPENDIX 1

Lentisphaera araneosa Cho et al. 2004, 1005VP – Valid publica- Lutibacter litoralis Choi and Cho 2006, 775VP tion: Validation List no. 98 – Effective publication: J.C. Cho Lutimonas vermicola S.J. Yang et al. 2007, 1682VP et al. (2004) Lysinibacillus boronitolerans Ahmed et al. 2007d, 1121VP Lentzea kentuckyensis Labeda et al. 2007, 1782VP Lysobacter concretionis H.S. Bae et al. 2005, 1160VP Leptolinea tardivitalis Yamada et al. 2006, 1339VP Lysobacter daejeonensis Weon et al. 2006a, 950VP Leptospira broomii Levett et al. 2006, 673VP Lysobacter defluvii Yassin et al. 2007a, 1134VP Leptotrichia goodfellowii Eribe et al. 2004, 589VP Lysobacter koreensis J.W. Lee et al. 2006, 234VP Leptotrichia hofstadii Eribe et al. 2004, 589VP Lysobacter niabensis Weon et al. 2007c, 549VP Leptotrichia shahii Eribe et al. 2004, 589VP Lysobacter niastensis Weon et al. 2007c, 549VP Leptotrichia wadei Eribe et al. 2004, 591VP Lysobacter yangpyeongensis Weon et al. 2006a, 950VP Leucobacter albus Y.C. Lin et al. 2004, 1675VP Mahella australiensis Bonilla Salinas et al. 2004b, 2172VP Leucobacter alluvii Morais et al. 2006, 2507VP – Valid publica- VP tion: Validation List no. 112 – Effective publication: Morais Malikia granosa Spring et al. 2005b, 627 et al. (2006) Maribacter aquivivus Nedashkovskaya et al. 2004b, 1022VP Leucobacter aridicollis Morais et al. 2005, 547VP – Valid publica- Maribacter dokdonensis J.H. Yoon et al. 2005j, 2054VP tion: Validation List no. 102 – Effective publication: Morais Maribacter orientalis Nedashkovskaya et al. 2004b, 1022VP et al. (2004) Maribacter polysiphoniae Nedashkovskaya et al. 2007f, 2841VP Leucobacter chromiireducens Morais et al. 2005, 547VP – Valid publi- Maribacter sedimenticola Nedashkovskaya et al. 2004b, 1021VP cation: Validation List no. 102 – Effective publication: Morais VP et al. (2004) Maribacter ulvicola Nedashkovskaya et al. 2004b, 1022 VP Leucobacter iarius Somvanshi et al. 2007, 685VP Maribius pelagius Choi et al. 2007, 274 VP Leucobacter luti Morais et al. 2006, 2507VP – Valid publication: Vali- Maribius salinus Choi et al. 2007, 274 dation List no. 112 – Effective publication: Morais et al. (2006) Marichromatium bheemlicum Anil Kumar et al. 2007b, 1264VP Leuconostoc durionis Leisner et al. 2005, 1269VP Marichromatium indicum Arunasri et al. 2005, 678VP Leuconostoc holzapfelii De Bruyne et al. 2007, 2957VP Marinibacillus campisalis J.H. Yoon et al. 2004g, 1320VP Leuconostoc pseudoficulneum Chambel et al. 2006, 1379VP Marinibacillus campisalis J.H. Yoon et al. 2004g is illegitimate Levilinea saccharolytica Yamada et al. 2006, 1338VP because it is placed in an illegitimate genus. Lewinella agarilytica S.D. Lee 2007e, 2817VP Marinicola seohaensis J.H. Yoon et al. 2005c, 862VP Lewinella lutea Khan et al. 2007a, 2950VP Mariniflexile gromovii Nedashkovskaya et al. 2006a, 1636VP Lewinella marina Khan et al. 2007a, 2950VP Marinilactibacillus piezotolerans Toffin et al. 2005, 349VP Lishizhenia caseinilytica K.W. Lau et al. 2006b, 2321VP Marinimicrobium agarilyticum J.M. Lim et al. 2006c, 656VP Litoricola lipolytica H. Kim et al. 2007a, 1796VP Marinimicrobium koreense J.M. Lim et al. 2006c, 656VP Loktanella agnita Ivanova et al. 2005e, 2206VP Marinitoga hydrogenitolerans Postec et al. 2005, 1220VP Loktanella atrilutea Hosoya and Yokota 2007d, 1968VP Marinitoga okinawensis Nunoura et al. 2007a, 470VP Loktanella fryxellensis Van Trappen et al. 2004a, 1268VP Marinobacter algicola Green et al. 2006, 526VP Loktanella hongkongensis S.C. Lau et al. 2004, 2283VP Marinobacter bryozoorum Romanenko et al. 2005a, 145VP Loktanella koreensis Weon et al. 2006e, 2200VP Marinobacter daepoensis J.H. Yoon et al. 2004l, 1802VP Loktanella maricola J.H. Yoon et al. 2007xii, 1801VP Marinobacter flavimaris J.H. Yoon et al. 2004l, 1802VP Loktanella rosea Ivanova et al. 2005e, 2206VP Marinobacter gudaonensis J. Gu et al. 2007a, 253VP Loktanella salsilacus Van Trappen et al. 2004a, 1267VP Marinobacter koreensis B.Y. Kim et al. 2006f, 2654VP Loktanella vestfoldensis Van Trappen et al. 2004a, 1268VP Marinobacter maritimus Shivaji et al. 2005b, 1455VP Longilinea arvoryzae Yamada et al. 2007, 2304VP Marinobacter salicampi J.H. Yoon et al. 2007xxvii, 2104VP Luedemannella flava Ara and Kudo 2007, 1372VP – Valid publica- Marinobacter salsuginis Antunes et al. 2007, 1038VP tion: Validation List no. 116 – Effective publication: Ara and Marinobacter sediminum Romanenko et al. 2005a, 147VP Kudo (2007d) Marinobacter segnicrescens Guo et al. 2007, 1973VP Luedemannella helvata Ara and Kudo 2007, 1372VP – Valid pub- Marinobacter vinifirmus Liebgott et al. 2006, 2514VP lication: Validation List no. 116 – Effective publication: Ara and Kudo (2007d) Marinobacterium halophilum H.W. Chang et al. 2007, 79VP Luteibacter rhizovicinus Johansen et al. 2005, 2289VP Marinobacterium litorale H. Kim et al. 2007b, 1661VP Luteimonas composti C.C. Young et al. 2007c, 742VP Marinococcus halotolerans W.J. Li et al. 2005d, 1803VP APPENDIX 1 1341

Marinomonas aquimarina corrig. Macián et al. 2005, 983VP – Valid Methylibium fulvum M.H. Yoon et al. 2007c, 2065VP publication: Validation List no. 103 – Effective publication: Methylibium petroleiphilum Nakatsu et al. 2006, 988VP Macián et al. (2005c) Methylobacillus pratensis Doronina et al. 2004, 1455VP Marinomonas dokdonensis J.H. Yoon et al. 2005f, 2305VP Methylobacter tundripaludum Wartiainen et al. 2006a, 112VP Marinomonas ostreistagni K.W. Lau et al. 2006a, 2274VP Methylobacterium adhaesivum Gallego et al. 2006a, 340VP Marinomonas polaris Gupta et al. 2006, 363VP Methylobacterium aquaticum Gallego et al. 2005a, 285VP Marinomonas pontica Ivanova et al. 2005c, 278VP Methylobacterium hispanicum Gallego et al. 2005a, 284VP Marinomonas ushuaiensis Prabagaran et al. 2005, 311VP Methylobacterium isbiliense Gallego et al. 2005c, 2335VP Marinospirillum insulare Satomi et al. 2004, 166VP Methylobacterium jeotgali Aslam et al. 2007a, 568VP Maritimibacter alkaliphilus K. Lee et al. 2007, 1656VP Methylobacterium nodulans Jourand et al. 2004, 2271VP Marixanthomonas ophiurae Romanenko et al. 2007a, 459VP Methylobacterium oryzae Madhaiyan et al. 2007, 329VP Marmoricola aequoreus S.D. Lee 2007b, 1392VP Methylobacterium platani Y.S. Kang et al. 2007, 2852VP Martelella mediterranea Rivas et al. 2005d, 958VP Methylobacterium podarium Anesti et al. 2006, 2025VP – Valid VP Massilia albidiflava Y.Q. Zhang et al. 2006, 462 publication: Validation List no. 111 – Effective publication: Massilia aurea Gallego et al. 2006e, 2451VP Anesti et al. (2004) Massilia dura Y.Q. Zhang et al. 2006, 461VP Methylobacterium populi Van Aken et al. 2004, 1194VP Massilia lutea Y.Q. Zhang et al. 2006, 463VP Methylobacterium salsuginis X. Wang et al. 2007, 1701VP Massilia plicata Y.Q. Zhang et al. 2006, 462VP Methylobacterium variabile Gallego et al. 2005b, 1432VP Mechercharimyces asporophorigenens Matsuo et al. 2006, 2840VP Methylocella tundrae Dedysh et al. 2004, 155VP Mechercharimyces mesophilus Matsuo et al. 2006, 2840VP Methylocystis heyeri Dedysh et al. 2007, 478VP Meganema perideroedes Thomsen et al. 2006, 1867VP Methylocystis hirsuta Lindner et al. 2007, 1898VP Megasphaera paucivorans Juvonen and Suihko 2006, 700VP Methylocystis rosea Wartiainen et al. 2006b, 546VP Megasphaera sueciensis Juvonen and Suihko 2006, 700VP Methylohalobius crimeensis Heyer et al. 2005, 1824VP Meiothermus timidus Pires et al. 2005, 1396VP – Valid publication: Vali- Methylohalomonas lacus Sorokin et al. 2007d, 2767VP dation List no. 104 – Effective publication: Pires et al. (2005) Methylonatrum kenyense Sorokin et al. 2007d, 2768VP Mesonia mobilis Nedashkovskaya et al. 2006e, 2435VP Methylophaga aminisulfidivorans H.G. Kim et al. 2007, 2099VP Mesorhizobium albiziae F.Q. Wang et al. 2007, 1196VP Methylosarcina lacus Kalyuzhnaya et al. 2005, 2349VP Mesorhizobium septentrionale Gao et al. 2004, 2010VP Methylosoma difficile Rahalkar et al. 2007, 1079VP Mesorhizobium temperatum Gao et al. 2004, 2011VP Methylotenera mobilis Kalyuzhnaya et al. 2006a, 2822VP Mesorhizobium thiogangeticum Ghosh and Roy 2006, 95VP Methyloversatilis universalis Kalyuzhnaya et al. 2006b, 2521VP Metascardovia criceti Okamoto et al. 2007, 2449VP – Valid publica- Microbacterium aoyamense A. Kageyama et al. 2006b, 2115VP tion: Validation List no. 118 – Effective publication: Okamoto et al. (2007) Microbacterium deminutum A. Kageyama et al. 2006b, 2115VP Methanobacterium aarhusense Shlimon et al. 2004, 762VP Microbacterium halotolerans W.J. Li et al. 2005a, 69VP Methanobacterium beijingense K. Ma et al. 2005, 327VP Microbacterium hydrocarbonoxydans Schippers et al. 2005a, 657VP Methanobrevibacter millerae Rea et al. 2007, 454VP Microbacterium indicum Shivaji et al. 2007, 1821VP Methanobrevibacter olleyae Rea et al. 2007, 454VP Microbacterium koreense J.S. Lee et al. 2006a, 426VP Methanocalculus chunghsingensis M.C. Lai et al. 2004, 189VP Microbacterium marinilacus A. Kageyama et al. 2007a, 2358VP Methanococcoides alaskense Singh et al. 2005, 2537VP Microbacterium natoriense J. Liu et al. 2005, 664VP Methanococcus aeolicus Kendall et al. 2006, 1528VP Microbacterium oleivorans Schippers et al. 2005a, 657VP Methanofollis formosanus S.Y. Wu et al. 2005, 841VP Microbacterium paludicola H.Y. Park et al. 2006, 536VP Methanomethylovorans hollandica Lomans et al. 2004, 307VP – Microbacterium pumilum A. Kageyama et al. 2006b, 2115VP Valid publication: Validation List no. 96 – Effective publica- Microbacterium sediminicola A. Kageyama et al. 2007a, 2357VP tion: Lomans et al. (1999) Microbacterium terricola corrig. Kageyama et al. 2007, 1372VP – Methanomethylovorans thermophila Jiang et al. 2005, 2469VP Valid publication: Validation List no. 116 – Effective publica- Methanosaeta harundinacea K. Ma et al. 2006, 130VP tion: A. Kageyama et al. (2007b) Methanotorris formicicus Takai et al. 2004c, 1099VP Microbacterium ulmi Rivas et al. 2004d, 516VP Methermicoccus shengliensis Cheng et al. 2007, 2968VP Microbacterium xylanilyticum K.K. Kim et al. 2005c, 2077VP Methylibium aquaticum J. Song and Cho 2007, 2126VP Microbulbifer celer J.H. Yoon et al. 2007ii, 2366VP 1342 APPENDIX 1

Microbulbifer maritimus J.H. Yoon et al. 2004f, 1114VP Millisia brevis Soddell et al. 2006a, 742VP Microcella alkaliphila Tiago et al. 2006b, 2315VP Mitsuaria chitosanitabida Amakata et al. 2005, 1930VP Microcella putealis Tiago et al. 2005, 1743VP – Valid publica- Modestobacter versicolor Reddy et al. 2007, 2018VP tion: Validation List no. 105 – Effective publication: Tiago Modicisalibacter tunisiensis Ben Ali Gam et al. 2007, 2312VP et al. (2005b) Moorella mulderi Balk et al. 2005, 1VP – Valid publication: Valida- VP Micrococcus flavus X.Y. Liu et al. 2007, 67 tion List no. 101 – Effective publication: Balk et al. (2003) Microlunatus ginsengisoli Y.S. Cui et al. 2007b, 715VP Moraxella bovoculi Angelos et al. 2007, 793VP Micromonospora auratinigra corrig. Thawai et al. 2004, 1425VP – Moraxella oblonga Xie and Yokota 2005b, 332VP Valid publication: Validation List no. 99 – Effective publica- Morganella psychrotolerans Emborg et al. 2006, 2478VP tion: Thawai et al. (2004) Moryella indoligenes Carlier et al. 2007, 728VP Micromonospora chokoriensis Ara and Kudo 2007, 1372VP – Valid VP publication: Validation List no. 116 – Effective publication: Mucilaginibacter gracilis Pankratov et al. 2007, 2353 Ara and Kudo (2007c) Mucilaginibacter paludis Pankratov et al. 2007, 2352VP Micromonospora citrea Kroppenstedt et al. 2005, 1743VP – Valid Mucispirillum schaedleri Robertson et al. 2005, 1203VP publication: Validation List no. 105 – Effective publication: Muricauda aquimarina J.H. Yoon et al. 2005v, 1019VP Kroppenstedt et al. (2005) Muricauda flavescens J.H. Yoon et al. 2005v, 1018VP Micromonospora coriariae Trujillo et al. 2006b, 2384VP Myceligenerans crystallogenes Groth et al. 2006, 286VP Micromonospora coxensis Ara and Kudo 2007, 1372VP – Valid pub- Myceligenerans xiligouense Cui et al. 2004, 1292VP lication: Validation List no. 116 – Effective publication: Ara VP and Kudo (2007c) Mycobacterium arupense Cloud et al. 2006, 1417 VP Micromonospora eburnea Thawai et al. 2005b, 420VP Mycobacterium aubagnense Adékambi et al. 2006b, 140 VP Micromonospora echinaurantiaca Kroppenstedt et al. 2005, 1743VP Mycobacterium boenickei Schinsky et al. 2004, 1664 – Valid publication: Validation List no. 105 – Effective publi- Mycobacterium bolletii Adékambi et al. 2006b, 140VP cation: Kroppenstedt et al. (2005) Mycobacterium brisbanense Schinsky et al. 2004, 1665VP VP Micromonospora echinofusca Kroppenstedt et al. 2005, 1743 – Mycobacterium canariasense Jiménez et al. 2004, 1733VP Valid publication: Validation List no. 105 – Effective publica- Mycobacterium chimaera Tortoli et al. 2004, 1283VP tion: Kroppenstedt et al. (2005) Mycobacterium colombiense Murcia et al. 2006, 2053VP Micromonospora endolithica Hirsch et al. 2004, 631VP – Valid pub- VP lication: Validation List no. 97 – Effective publication: Hirsch Mycobacterium conceptionense Adékambi et al. 2006, 2025 – Valid et al. (2004b) publication: Validation List no. 111 – Effective publication: Adékambi et al. (2006a) Micromonospora fulviviridis Kroppenstedt et al. 2005, 1743VP – VP Valid publication: Validation List no. 105 – Effective publica- Mycobacterium cosmeticum Cooksey et al. 2004, 2390 tion: Kroppenstedt et al. (2005) Mycobacterium florentinum Tortoli et al. 2005, 1105VP Micromonospora inyonensis Kroppenstedt et al. 2005, 1743VP – Mycobacterium fluoranthenivorans Hormisch et al. 2006, 1459VP – Valid publication: Validation List no. 105 – Effective publica- Valid publication: Validation List no. 110 – Effective publica- tion: Kroppenstedt et al. (2005) tion: Hormisch et al. (2004) Micromonospora lupini Trujillo et al. 2007, 2803VP Mycobacterium houstonense Schinsky et al. 2004, 1664VP Micromonospora mirobrigensis Trujillo et al. 2005a, 879VP Mycobacterium kumamotonense Masaki et al. 2007, 433VP – Valid Micromonospora peucetia Kroppenstedt et al. 2005, 1743VP – Valid publication: Validation List no. 114 – Effective publication: publication: Validation List no. 105 – Effective publication: Masaki et al. (2006) Kroppenstedt et al. (2005) Mycobacterium massiliense Adékambi et al. 2006, 2025VP – Valid Micromonospora saelicesensis Trujillo et al. 2007, 2801VP publication: Validation List no. 111 – Effective publication: Adékambi et al. (2004) Micromonospora sagamiensis Kroppenstedt et al. 2005, 1743VP – VP Valid publication: Validation List no. 105 – Effective publica- Mycobacterium monacense Reischl et al. 2006, 2578 tion: Kroppenstedt et al. (2005) Mycobacterium nebraskense Mohamed et al. 2004, 2060VP Micromonospora siamensis Thawai et al. 2006, 2VP – Valid publica- Mycobacterium neworleansense Schinsky et al. 2004, 1665VP tion: Validation List no. 107 – Effective publication: Thawai Mycobacterium parascrofulaceum Turenne et al. 2004a, 1550VP et al. (2005a) Mycobacterium parmense Fanti et al. 2004, 1126VP Micromonospora viridifaciens Kroppenstedt et al. 2005, 1744VP – Mycobacterium phocaicum Adékambi et al. 2006b, 140VP Valid publication: Validation List no. 105 – Effective publica- VP tion: Kroppenstedt et al. (2005) Mycobacterium pseudoshottsii Rhodes et al. 2005, 1144 VP Microtetraspora malaysiensis Nakajima et al. 2004, 1VP – Valid pub- Mycobacterium psychrotolerans Trujillo et al. 2004, 1461 lication: Validation List no. 95 – Effective publication: Y. Naka- Mycobacterium pyrenivorans Derz et al. 2004, 2316VP jima et al. (2003) Mycobacterium saskatchewanense Turenne et al. 2004b, 665VP APPENDIX 1 1343

Mycobacterium seoulense Mun et al. 2007, 597VP Nitrincola lacisaponensis Dimitriu et al. 2005, 2277VP Mycoplasma amphoriforme Pitcher et al. 2005, 2592VP Nocardia acidivorans Kämpfer et al. 2007b, 1185VP Mycoplasma iguanae D.R. Brown et al. 2006, 763VP Nocardia alba Li et al. 2004, 1425VP – Valid publication: Valida- Mycoplasma testudineum D.R. Brown et al. 2004, 1529VP tion List no. 99 – Effective publication: W.J. Li et al. (2004c) VP Myroides pelagicus J. Yoon et al. 2006, 1919VP Nocardia amamiensis H. Yamamura et al. 2007, 1601 VP Nannocystis pusilla Reichenbach 2007, 894VP – Valid publication: Nocardia anemiae Kageyama et al. 2005, 1396 – Valid pub- Validation List no. 115 – Effective publication: Reichenbach lication: Validation List no. 104 – Effective publication: (2005k) A. Kageyama et al. (2005b) VP Natranaerobius thermophilus Mesbah et al. 2007, 2511VP Nocardia aobensis Kageyama et al. 2005, 547 – Valid pub- lication: Validation List no. 102 – Effective publication: Natrinema altunense X.W. Xu et al. 2005b, 1312VP A. Kageyama et al. (2004c) Natrinema ejinorense Castillo et al. 2006d, 2685VP Nocardia araoensis A. Kageyama et al. 2004h, 2027VP Natronocella acetinitrilica Sorokin et al. 2007, 1372VP – Valid Nocardia arthritidis Kageyama et al. 2005, 1VP – Valid publication: publication: Validation List no. 116 – Effective publication: Validation List no. 101 – Effective publication: A. Kageyama Sorokin et al. (2007e) et al. (2004d) Natronococcus jeotgali Roh et al. 2007a, 2130VP Nocardia asiatica A. Kageyama et al. 2004a, 127VP Natronolimnobius baerhuensis Itoh et al. 2005, 1744VP – Valid pub- Nocardia concava A. Kageyama et al. 2005c, 2082VP lication: Validation List no. 105 – Effective publication: Itoh VP et al. (2005) Nocardia coubleae Rodríguez-Nava et al. 2007, 1485 VP Natronolimnobius innermongolicus Itoh et al. 2005, 1744VP – Valid Nocardia elegans Yassin and Brenner 2005, 1508 publication: Validation List no. 105 – Effective publication: Nocardia exalbida S. Iida et al. 2006, 1195VP Itoh et al. (2005) Nocardia gamkensis le Roes and Meyers 2007, 1VP – Valid publica- Natronorubrum aibiense Cui et al. 2006a, 1517VP tion: Validation List no. 113 – Effective publication: le Roes Natronorubrum sulfidifaciens H.L. Cui et al. 2007a, 739VP and Meyers (2006) VP Naxibacter alkalitolerans P. Xu et al. 2005b, 1152VP Nocardia harenae J.P. Seo and Lee 2006, 2206 VP Neisseria animaloris Vandamme et al. 2006, 1803VP Nocardia higoensis A. Kageyama et al. 2004g, 1930 VP Neisseria bacilliformis Han et al. 2006, 1459VP – Valid publication: Nocardia inohanensis A. Kageyama et al. 2004f, 567 Validation List no. 110 – Effective publication: Han et al. Nocardia jejuensis S.D. Lee 2006b, 561VP (2006) Nocardia jiangxiensis Cui et al. 2005, 1923VP VP Neisseria zoodegmatis Vandamme et al. 2006, 1804 Nocardia kruczakiae Conville et al. 2005, 547VP – Valid publica- Neoasaia chiangmaiensis Yukphan et al. 2006, 499VP – Valid pub- tion: Validation List no. 102 – Effective publication: Conville lication: Validation List no. 108 – Effective publication: Yuk- et al. (2004) phan et al. (2005c) Nocardia lijiangensis Xu et al. 2006, 2026VP – Valid publication: Neptuniibacter caesariensis Arahal et al. 2007, 1004VP Validation List no. 111 – Effective publication: P. Xu et al. Nereida ignava Pujalte et al. 2005c, 635VP (2006) VP Nesiotobacter exalbescens Donachie et al. 2006, 566VP Nocardia mexicana Rodríguez-Nava et al. 2006, 925 – Valid publication: Validation List no. 109 – Effective publication: Nesterenkonia aethiopica Delgado et al. 2006, 1232VP Rodríguez-Nava et al. (2004) Nesterenkonia halotolerans W.J. Li et al. 2004b, 838VP Nocardia miyunensis Cui et al. 2005, 1924VP Nesterenkonia jeotgali J.H. Yoon et al. 2006l, 2591VP Nocardia neocaledoniensis Saintpierre-Bonaccio et al. 2004b, Nesterenkonia lutea W.J. Li et al. 2005b, 465VP 601VP Nesterenkonia sandarakina W.J. Li et al. 2005b, 464VP Nocardia niigatensis A. Kageyama et al. 2004f, 568VP Nesterenkonia xinjiangensis W.J. Li et al. 2004b, 840VP Nocardia ninae Laurent et al. 2007, 664VP Niabella aurantiaca B.Y. Kim et al. 2007, 540VP Nocardia pigrifrangens L. Wang et al. 2004, 1685VP Niastella koreensis Weon et al. 2006f, 1779VP Nocardia pneumoniae A. Kageyama et al. 2004h, 2028VP Niastella yeongjuensis Weon et al. 2006f, 1781VP Nocardia polyresistens P. Xu et al. 2005a, 1468VP Nicoletella semolina Kuhnert et al. 2005, 547VP – Valid publica- Nocardia shimofusensis A. Kageyama et al. 2004g, 1930VP tion: Validation List no. 102 – Effective publication: Kuhnert Nocardia sienata corrig. Kageyama et al. 2004, 1005VP – Valid et al. (2004) publication: Validation List no. 98 – Effective publication: Nitratifractor salsuginis S. Nakagawa et al. 2005c, 931VP A. Kageyama et al. (2004e) Nitratireductor aquibiodomus Labbé et al. 2004, 272VP Nocardia speluncae J.P. Seo et al. 2007, 2934VP Nitratiruptor tergarcus S. Nakagawa et al. 2005c, 931VP Nocardia takedensis H. Yamamura et al. 2005, 435VP 1344 APPENDIX 1

Nocardia tenerifensis Kämpfer et al. 2004a, 383VP Novosphingobium lentum Tiirola et al. 2005, 585VP Nocardia terpenica Hoshino et al. 2007, 1458VP Novosphingobium nitrogenifigens Addison et al. 2007, 2470VP Nocardia testacea corrig. Kageyama et al. 2004, 1005VP – Valid Novosphingobium pentaromativorans Sohn et al. 2004a, 1486VP publication: Validation List no. 98 – Effective publication: Novosphingobium taihuense Z.P. Liu et al. 2005a, 1231VP A. Kageyama et al. (2004e) Oceanibulbus indolifex Wagner-Döbler et al. 2004, 1183VP Nocardia thailandica Kageyama et al. 2005, 547VP – Valid pub- Oceanicola batsensis J.C. Cho and Giovannoni 2004b, 1133VP lication: Validation List no. 102 – Effective publication: A. Kageyama et al. (2004b) Oceanicola granulosus J.C. Cho and Giovannoni 2004b, 1133VP Nocardia vermiculata Kageyama et al. 2005, 547VP – Valid pub- Oceanicola marinus K.Y. Lin et al. 2007, 1627VP lication: Validation List no. 102 – Effective publication: Oceanicola nanhaiensis J. Gu et al. 2007b, 159VP A. Kageyama et al. (2004b) Oceanimonas smirnovii Ivanova et al. 2005, 984VP – Valid publica- Nocardia xishanensis J. Zhang et al. 2004, 2302VP tion: Validation List no. 103 – Effective publication: Ivanova Nocardia yamanashiensis A. Kageyama et al. 2004f, 568VP et al. (2005d) Nocardioides aestuarii Yi and Chun 2004c, 2152VP Oceanisphaera donghaensis S.J. Park et al. 2006, 897VP Nocardioides alkalitolerans J.H. Yoon et al. 2005l, 813VP Oceanithermus desulfurans Mori et al. 2004, 1564VP Nocardioides aquiterrae J.H. Yoon et al. 2004d, 74VP Oceanobacillus chironomi Raats and Halpern 2007, 258VP Nocardioides aromaticivorans Kubota et al. 2005, 984VP – Valid Oceanobacillus oncorhynchi Yumoto et al. 2005b, 1523VP publication: Validation List no. 103 – Effective publication: Oceanobacillus profundus Y.G. Kim et al. 2007a, 412VP Kubota et al. (2005) Ochrobactrum cytisi Zurdo-Piñeiro et al. 2007, 787VP VP Nocardioides dubius J.H. Yoon et al. 2005t, 2211 Ochrobactrum haematophilum Kämpfer et al. 2007e, 2517VP VP Nocardioides exalbidus Li et al. 2007, 2449 – Valid publication: Ochrobactrum lupini Trujillo et al. 2006, 1459VP – Valid publica- Validation List no. 118 – Effective publication: B. Li et al. tion: Validation List no. 110 – Effective publication: Trujillo (2007b) et al. (2005b) VP Nocardioides furvisabuli S.D. Lee 2007, 37 Ochrobactrum oryzae Tripathi et al. 2006, 1679VP VP Nocardioides ganghwensis Yi and Chun 2004b, 1298 Ochrobactrum pseudintermedium Teyssier et al. 2007, 1011VP VP Nocardioides insulae J.H. Yoon et al. 2007vii, 138 Ochrobactrum pseudogrignonense Kämpfer et al. 2007e, 2515VP VP Nocardioides kongjuensis J.H. Yoon et al. 2006n, 1786 Oenococcus kitaharae Endo and Okada 2006, 2347VP VP Nocardioides kribbensis J.H. Yoon et al. 2005m, 1614 Olivibacter sitiensis Ntougias et al. 2007a, 402VP VP Nocardioides lentus J.H. Yoon et al. 2006m, 274 Olleya marilimosa Mancuso Nichols et al. 2005, 1560VP VP Nocardioides marinisabuli D.W. Lee et al. 2007, 2961 Oribacterium sinus Carlier et al. 2004, 1614VP VP Nocardioides marinus Choi et al. 2007, 778 Ornithinibacillus bavariensis Mayr et al. 2006, 1387VP VP Nocardioides oleivorans Schippers et al. 2005b, 1502 Ornithinibacillus californiensis Mayr et al. 2006, 1388VP VP Nocardioides panacihumi D.S. An et al. 2007b, 2145 Ornithinimicrobium kibberense Mayilraj et al. 2006d, 1660VP VP Nocardioides terrigena J.H. Yoon et al. 2007xxiii, 2474 Oryzihumus leptocrescens A. Kageyama et al. 2005a, 2558VP VP Nocardiopsis aegyptia Sabry et al. 2004, 455 Oscillibacter valericigenes Iino et al. 2007, 1844VP VP Nocardiopsis alkaliphila Hozzein et al. 2004, 250 Ottowia thiooxydans Spring et al. 2004, 104VP VP Nocardiopsis baichengensis W.J. Li et al. 2006a, 1095 Owenweeksia hongkongensis K.W. Lau et al. 2005, 1055VP VP Nocardiopsis chromatogenes W.J. Li et al. 2006a, 1094 Paenibacillus alkaliterrae J.H. Yoon et al. 2005k, 2342VP VP Nocardiopsis gilva W.J. Li et al. 2006a, 1093 Paenibacillus anaericanus Horn et al. 2005, 1263VP VP Nocardiopsis rhodophaea W.J. Li et al. 2006a, 1094 Paenibacillus antarcticus Montes et al. 2004, 1523VP VP Nocardiopsis rosea W.J. Li et al. 2006a, 1094 Paenibacillus assamensis Saha et al. 2005b, 2579VP VP Nocardiopsis salina W.J. Li et al. 2004d, 1808 Paenibacillus barcinonensis Sánchez et al. 2005, 937VP VP Nonlabens tegetincola S.C. Lau et al. 2005c, 2281 Paenibacillus barengoltzii Osman et al. 2006, 1514VP VP Nonomuraea bangladeshensis Ara et al. 2007b, 1506 Paenibacillus cellulosilyticus Rivas et al. 2006b, 2779VP VP Nonomuraea coxensis Ara et al. 2007b, 1507 Paenibacillus cineris Logan et al. 2004a, 1075VP VP Nonomuraea kuesteri Kämpfer et al. 2005a, 848 Paenibacillus cookii Logan et al. 2004a, 1075VP VP Nonomuraea maheshkhaliensis Ara et al. 2007, 2449 – Valid pub- Paenibacillus elgii D.S. Kim et al. 2004, 2034VP lication: Validation List no. 118 – Effective publication: Ara VP et al. (2007a) Paenibacillus favisporus Velázquez et al. 2004, 61 APPENDIX 1 1345

Paenibacillus fonticola J.H. Chou et al. 2007b, 1348VP Pectinatus haikarae Juvonen and Suihko 2006, 701VP Paenibacillus gansuensis J.M. Lim et al. 2006d, 2133VP Pectinatus portalensis Gonzalez et al. 2005, 547VP – Valid publica- Paenibacillus ginsengarvi M.H. Yoon et al. 2007a, 1812VP tion: Validation List no. 102 – Effective publication: Gonzalez et al. (2004) Paenibacillus ginsengisoli Lee et al. 2007, 1372VP – Valid publica- VP tion: Validation List no. 116 – Effective publication: M. Lee Pediococcus cellicola B. Zhang et al. 2005, 2169 et al. (2007) Pediococcus ethanolidurans L. Liu et al. 2006, 2407VP Paenibacillus hodogayensis Takeda et al. 2005, 740VP Pediococcus siamensis Tanasupawat et al. 2007, 1372VP – Valid pub- Paenibacillus humicus Vaz-Moreira et al. 2007a, 2270VP lication: Validation List no. 116 – Effective publication: Tana- supawat et al. (2007b) Paenibacillus lactis Scheldeman et al. 2004a, 889VP Pediococcus stilesii Franz et al. 2006, 332VP Paenibacillus massiliensis Roux and Raoult 2004, 1051VP Pedobacter aquatilis Gallego et al. 2006c, 1854VP Paenibacillus mendelii Šmerda et al. 2005, 2353VP Pedobacter caeni Vanparys et al. 2005a, 1316VP Paenibacillus motobuensis K. Iida et al. 2005, 1814VP Pedobacter duraquae Muurholm et al. 2007, 2225VP Paenibacillus panacisoli Ten et al. 2006a, 2680VP Pedobacter ginsengisoli Ten et al. 2006e, 2568VP Paenibacillus pasadenensis Osman et al. 2006, 1512VP Pedobacter hartonius Muurholm et al. 2007, 2225VP Paenibacillus phyllosphaerae Rivas et al. 2005c, 745VP Pedobacter himalayensis Shivaji et al. 2005a, 1084VP Paenibacillus rhizosphaerae Rivas et al. 2005a, 1307VP Pedobacter insulae J.H. Yoon et al. 2007xviii, 2002VP Paenibacillus sabinae Y. Ma et al. 2007a, 9VP Pedobacter koreensis Baik et al. 2007b, 2081VP Paenibacillus sanguinis Roux and Raoult 2004, 1052VP Pedobacter lentus J.H. Yoon et al. 2007xix, 2093VP Paenibacillus sepulcri Šmerda et al. 2006, 2343VP Pedobacter metabolipauper Muurholm et al. 2007, 2226VP Paenibacillus soli M.J. Park et al. 2007, 149VP Pedobacter panaciterrae M.H. Yoon et al. 2007b, 385VP Paenibacillus taiwanensis F.L. Lee et al. 2007, 1353VP Pedobacter roseus Hwang et al. 2006, 1834VP Paenibacillus terrigena Xie and Yokota 2007, 71VP Pedobacter sandarakinus J.H. Yoon et al. 2006q, 1276VP Paenibacillus timonensis Roux and Raoult 2004, 1053VP Pedobacter steynii Muurholm et al. 2007, 2226VP Paenibacillus wynnii Rodríguez-Díaz et al. 2005, 2097VP Pedobacter suwonensis S.W. Kwon et al. 2007a, 481VP Paenibacillus xinjiangensis J.M. Lim et al. 2006f, 2581VP Pedobacter terrae J.H. Yoon et al. 2007xxii, 2465VP Paenibacillus xylanilyticus Rivas et al. 2005b, 406VP Pedobacter terricola J.H. Yoon et al. 2007xix, 2094VP Paenibacillus zanthoxyli Y. Ma et al. 2007b, 876VP Pedobacter westerhofensis Muurholm et al. 2007, 2226VP Palaeococcus helgesonii Amend et al. 2006, 3VP – Valid publica- VP tion: Validation List no. 107 – Effective publication: Amend Pelagibaca bermudensis J.C. Cho and Giovannoni 2006, 858 et al. (2003) Pelagibacillus goriensis Y.G. Kim et al. 2007b, 1559VP Palleronia marisminoris Martínez-Checa et al. 2005, 2528VP Pelagicoccus albus J. Yoon et al. 2007g, 1381VP Paludibacter propionicigenes Ueki et al. 2006a, 43VP Pelagicoccus croceus J. Yoon et al. 2007e, 2877VP Parabacteroides johnsonii Sakamoto et al. 2007a, 295VP Pelagicoccus litoralis J. Yoon et al. 2007g, 1383VP Paracoccus bengalensis Ghosh et al. 2006, 2507VP – Valid publica- Pelagicoccus mobilis J. Yoon et al. 2007g, 1381VP tion: Validation List no. 112 – Effective publication: Ghosh Pelobacter seleniigenes Narasingarao and Häggblom 2007, 1941VP et al. (2006) Pelomonas aquatica Gomila et al. 2007, 2634VP Paracoccus haeundaensis J.H. Lee et al. 2004, 1701VP Pelomonas puraquae Gomila et al. 2007, 2634VP Paracoccus homiensis B.Y. Kim et al. 2006e, 2389VP Pelosinus fermentans Shelobolina et al. 2007, 133VP Paracoccus koreensis La et al. 2005, 1659VP Pelotomaculum isophthalicicum corrig. Qiu et al. 2006, 2026VP – VP Paracoccus sulfuroxidans X.Y. Liu et al. 2006, 2695 Valid publication: Validation List no. 111 – Effective publica- Paraferrimonas sedimenticola Khan and Harayama 2007, 1497VP tion: Y.L. Qiu et al. (2006) Parapedobacter koreensis M.K. Kim et al. 2007b, 1339VP Pelotomaculum propionicicum Imachi et al. 2007, 1491VP Parasporobacterium paucivorans Lomans et al. 2004, 307VP – Valid Pelotomaculum schinkii de Bok et al. 2005, 1702VP publication: Validation List no. 96 – Effective publication: Pelotomaculum terephthalicicum corrig. Qiu et al. 2006, 2026VP – Lomans et al. (2001) Valid publication: Validation List no. 111 – Effective publica- Parvibaculum lavamentivorans Schleheck et al. 2004, 1496VP tion: Y.L. Qiu et al. (2006) Patulibacter minatonensis Y. Takahashi et al. 2006, 405VP Peptostreptococcus stomatis Downes and Wade 2006, 753VP Paucibacter toxinivorans Rapala et al. 2005, 1567VP Perexilibacter aurantiacus J. Yoon et al. 2007a, 966VP Paucisalibacillus globulus Nunes et al. 2006, 1842VP Persicitalea jodogahamensis J. Yoon et al. 2007b, 1016VP 1346 APPENDIX 1

Persicivirga xylanidelens O’Sullivan et al. 2006, 178VP Polaromonas aquatica Kämpfer et al. 2006c, 607VP Petrimonas sulfuriphila Grabowski et al. 2005, 1119VP Polaromonas hydrogenivorans Sizova and Panikov 2007, 619VP Petrobacter succinatimandens Bonilla Salinas et al. 2004a, 648VP Polaromonas naphthalenivorans Jeon et al. 2004, 96VP Petrotoga halophila Miranda-Tello et al. 2007, 43VP Polymorphospora rubra Tamura et al. 2006, 1963VP Petrotoga mexicana Miranda-Tello et al. 2004, 172VP Pontibacillus chungwhensis J.M. Lim et al. 2005b, 169VP Phaeobacter daeponensis J.H. Yoon et al. 2007xi, 860VP Pontibacillus marinus J.M. Lim et al. 2005a, 1030VP Phaeobacter inhibens Martens et al. 2006, 1301VP Pontibacter actiniarum Nedashkovskaya et al. 2005l, 2586VP Phenylobacterium falsum Tiago et al. 2005, 1744VP – Valid publica- Pontibacter akesuensis Zhou et al. 2007b, 324VP tion: Validation List no. 105 – Effective publication: Tiago et Porphyrobacter dokdonensis J.H. Yoon et al. 2006d, 1082VP al. (2005a) Porphyrobacter donghaensis J.H. Yoon et al. 2004h, 2234VP Phenylobacterium koreense Aslam et al. 2005b, 2004VP Porphyromonas somerae Summanen et al. 2006, 925VP – Valid pub- VP Phenylobacterium lituiforme Kanso and Patel 2004, 2144 lication: Validation List no. 109 – Effective publication: Sum- Photobacterium aplysiae H.J. Seo et al. 2005b, 2295VP manen et al. (2005) Photobacterium frigidiphilum H.J. Seo et al. 2005b, 1664VP Porphyromonas uenonis Finegold et al. 2005, 547VP – Valid publi- Photobacterium ganghwense Y.D. Park et al. 2006a, 747VP cation: Validation List no. 102 – Effective publication: Fine- gold et al. (2004b) Photobacterium halotolerans Rivas et al. 2006a, 1070VP Prevotella baroniae Downes et al. 2005, 1554VP Photobacterium kishitanii Ast et al. 2007, 2077VP Prevotella bergensis Downes et al. 2006, 611VP Photobacterium lipolyticum J.H. Yoon et al. 2005u, 338VP Prevotella copri Hayashi et al. 2007b, 943VP Photobacterium lutimaris Jung et al. 2007a, 335VP Prevotella maculosa Downes et al. 2007, 2938VP Photobacterium rosenbergii Thompson et al. 2005, 915VP Prevotella marshii Downes et al. 2005, 1554VP Phycicoccus jejuensis S.D. Lee 2006f, 2371VP Prevotella multiformis Sakamoto et al. 2005a, 818VP Phyllobacterium bourgognense Mantelin et al. 2006, 837VP Prevotella multisaccharivorax Sakamoto et al. 2005b, 1842VP Phyllobacterium brassicacearum Mantelin et al. 2006, 837VP Prevotella nanceiensis Alauzet et al. 2007, 2218VP Phyllobacterium catacumbae Jurado et al. 2005d, 1489VP Prevotella paludivivens Ueki et al. 2007, 1808VP Phyllobacterium ifriqiyense Mantelin et al. 2006, 837VP Prevotella pleuritidis Sakamoto et al. 2007c, 1726VP Phyllobacterium leguminum Mantelin et al. 2006, 837VP Prevotella salivae Sakamoto et al. 2004, 882VP Phyllobacterium trifolii Valverde et al. 2005, 1988VP Prevotella shahii Sakamoto et al. 2004, 881VP Pibocella ponti Nedashkovskaya et al. 2005b, 179VP Prevotella stercorea Hayashi et al. 2007b, 943VP Pigmentiphaga daeguensis J.H. Yoon et al. 2007iv, 1190VP Prevotella timonensis Glazunova et al. 2007, 885VP Pilibacter termitis Higashiguchi et al. 2006, 19VP Prolixibacter bellariivorans Holmes et al. 2007, 705VP Piscibacillus salipiscarius Tanasupawat et al. 2007b, 1416VP Promicromonospora pachnodae Cazemier et al. 2004, 1VP – Valid VP Planifilum fimeticola Hatayama et al. 2005b, 2104 publication: Validation List no. 95 – Effective publication: Planifilum fulgidum Hatayama et al. 2005b, 2104VP Cazemier et al. (2003) Planifilum yunnanense Y.X. Zhang et al. 2007, 1852VP Propionicicella superfundia H.S. Bae et al. 2006, 2026VP – Valid Planococcus columbae Suresh et al. 2007a, 1269VP publication: Validation List no. 111 – Effective publication: H.S. Bae et al. (2006b) Planococcus donghaensis Choi et al. 2007, 2648VP Propionispora hippei Abou-Zeid et al. 2004, 953VP Planococcus maitriensis Alam et al. 2004, 307VP – Valid publication: VP Validation List no. 96 – Effective publication: Alam et al. (2003) Proteiniphilum acetatigenes Chen and Dong 2005, 2261 VP Planococcus stackebrandtii Mayilraj et al. 2005, 93VP Providencia vermicola Somvanshi et al. 2006, 631 VP Planomicrobium chinense Dai et al. 2005, 701VP Pseudidiomarina sediminum Hu and Li 2007, 2576 VP Planotetraspora silvatica Tamura and Sakane 2004, 2055VP Pseudidiomarina taiwanensis Jean et al. 2006b, 904 VP Plantibacter auratus Y.C. Lin and Yokota 2006, 2338VP Pseudoalteromonas aliena Ivanova et al. 2004g, 1436 VP Pleomorphomonas koreensis Im et al. 2006b, 1665VP Pseudoalteromonas byunsanensis Y.D. Park et al. 2005a, 2521 VP Pleomorphomonas oryzae Xie and Yokota 2005d, 1236VP Pseudoalteromonas marina Y.D. Nam et al. 2007b, 16 VP Polaribacter butkevichii Nedashkovskaya et al. 2006, 1459VP – Valid Pseudoalteromonas spongiae S.C. Lau et al. 2005a, 1595 publication: Validation List no. 110 – Effective publication: Pseudochrobactrum asaccharolyticum Kämpfer et al. 2006h, Nedashkovskaya et al. (2005i) 1826VP Polaribacter dokdonensis J.H. Yoon et al. 2006j, 1252VP Pseudochrobactrum kiredjianiae Kämpfer et al. 2007f, 759VP APPENDIX 1 1347

Pseudochrobactrum saccharolyticum Kämpfer et al. 2006h, 1827VP Pseudoxanthomonas japonensis Thierry et al. 2004, 2254VP Pseudoclavibacter helvolus Manaia et al. 2004, 787VP Pseudoxanthomonas kalamensis Harada et al. 2006, 1105VP Pseudolabrys taiwanensis Kämpfer et al. 2006j, 2470VP Pseudoxanthomonas kaohsiungensis J.S. Chang et al. 2005, 984VP – Pseudomonas antarctica Reddy et al. 2004, 717VP Valid publication: Validation List no. 103 – Effective publica- tion: J.S. Chang et al. (2005) Pseudomonas argentinensis Peix et al. 2005, 1110VP Pseudoxanthomonas koreensis D.C. Yang et al. 2005, 791VP Pseudomonas azotifigens Hatayama et al. 2005a, 1542VP Pseudoxanthomonas mexicana Thierry et al. 2004, 2254VP Pseudomonas borbori Vanparys et al. 2006, 1880VP Pseudoxanthomonas spadix C.C. Young et al. 2007a, 1825VP Pseudomonas delhiensis Prakash et al. 2007, 529VP Pseudoxanthomonas suwonensis Weon et al. 2006b, 661VP Pseudomonas guineae Bozal et al. 2007, 2611VP Pseudoxanthomonas yeongjuensis Yoo et al. 2007c, 648VP Pseudomonas knackmussii Stolz et al. 2007, 575VP Psychrobacter adeliensis Shivaji et al. 2005, 547VP – Valid publica- VP Pseudomonas lurida Behrendt et al. 2007a, 983 tion: Validation List no. 102 – Effective publication: Shivaji Pseudomonas lutea Peix et al. 2004, 849VP et al. (2004) Pseudomonas meridiana Reddy et al. 2004, 717VP Psychrobacter alimentarius J.H. Yoon et al. 2005x, 175VP Pseudomonas mohnii Cámara et al. 2007, 930VP Psychrobacter aquaticus Shivaji et al. 2005c, 759VP Pseudomonas moorei Cámara et al. 2007, 929VP Psychrobacter aquimaris J.H. Yoon et al. 2005r, 1011VP Pseudomonas moraviensis Tvrzová et al. 2006, 2661VP Psychrobacter arcticus Bakermans et al. 2006, 1290VP Pseudomonas otitidis Clark et al. 2006, 713VP Psychrobacter arenosus Romanenko et al. 2004a, 1744VP Pseudomonas pachastrellae Romanenko et al. 2005b, 922VP Psychrobacter celer J.H. Yoon et al. 2005o, 1888VP Pseudomonas panacis Y.D. Park et al. 2005b, 1723VP Psychrobacter cibarius Jung et al. 2005b, 580VP Pseudomonas peli Vanparys et al. 2006, 1880VP Psychrobacter cryohalolentis Bakermans et al. 2006, 1289VP Pseudomonas pohangensis Weon et al. 2006d, 2155VP Psychrobacter maritimus Romanenko et al. 2004a, 1744VP Pseudomonas proteolytica Reddy et al. 2004, 718VP Psychrobacter namhaensis J.H. Yoon et al. 2005r, 1012VP Pseudomonas psychrotolerans Hauser et al. 2004, 1636VP Psychrobacter nivimaris Heuchert et al. 2004, 1909VP – Valid pub- Pseudomonas reinekei Cámara et al. 2007, 928VP lication: Validation List no. 100 – Effective publication: Heu- chert et al. (2004) Pseudomonas segetis Y.D. Park et al. 2006b, 2595VP Psychrobacter salsus Shivaji et al. 2005, 547VP – Valid publication: Pseudomonas simiae Vela et al. 2006, 2674VP Validation List no. 102 – Effective publication: Shivaji et al. Pseudomonas vranovensis Tvrzová et al. 2006, 2661VP (2004) Pseudomonas xanthomarina Romanenko et al. 2005, 2236VP – Psychrobacter vallis Shivaji et al. 2005c, 759VP Valid publication: Validation List no. 106 – Effective publica- Psychroflexus tropicus Donachie et al. 2004, 937VP tion: Romanenko et al. (2005c) Psychromonas hadalis Nogi et al. 2007, 1362VP Pseudonocardia ammonioxydans Z.P. Liu et al. 2006b, 556VP Psychromonas ingrahamii Auman et al. 2006, 1006VP Pseudonocardia antarctica Prabahar et al. 2004, 1005VP – Valid VP publication: Validation List no. 98 – Effective publication: Psychroserpens mesophilus K.K. Kwon et al. 2006b, 1057 Prabahar et al. (2004) Puniceicoccus vermicola Choo et al. 2007, 536VP Pseudonocardia benzenivorans Kämpfer and Kroppenstedt 2004, Pusillimonas noertemannii Stolz et al. 2005, 1080VP 751VP Pyxidicoccus fallax corrig Reichenbach 2007, 894VP – Valid Pseudonocardia chloroethenivorans S.B. Lee et al. 2004, 138VP publication: Validation List no. 115 – Effective publication: Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen Reichenbach (2005c) 2005, 597VP Quadrisphaera granulorum Maszenan et al. 2005b, 1774VP Pseudonocardia oroxyli Q. Gu et al. 2006, 2194VP Rapidithrix thailandica Srisukchayakul et al. 2007, 2277VP Pseudonocardia tetrahydrofuranoxydans Kämpfer et al. 2006e, 1536VP Reinekea blandensis Pinhassi et al. 2007, 2374VP Pseudoruegeria aquimaris J.H. Yoon et al. 2007xxviii, 546VP Reinekea marinisedimentorum Romanenko et al. 2004b, 672VP Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007c, Rheinheimera aquimaris J.H. Yoon et al. 2007xxix, 1389VP 1538VP Rheinheimera chironomi Halpern et al. 2007, 1875VP Pseudovibrio ascidiaceicola Fukunaga et al. 2006, 346VP Rheinheimera perlucida Brettar et al. 2006, 2182VP Pseudovibrio denitrificans Shieh et al. 2004, 2311VP Rheinheimera texasensis Merchant et al. 2007, 2379VP Pseudovibrio japonicus Hosoya and Yokota 2007c, 1953VP Rhizobium cellulosilyticum García-Fraile et al. 2007, 846VP Pseudoxanthomonas daejeonensis D.C. Yang et al. 2005, 791VP Rhizobium daejeonense Quan et al. 2005, 2547VP 1348 APPENDIX 1

Rhizobium lusitanum Valverde et al. 2006b, 2635VP Roseivirga echinicomitans Nedashkovskaya et al. 2005k, 1799VP Rhodanobacter fulvus Im et al. 2005, 547VP – Valid publication: Vali- Roseivirga ehrenbergii Nedashkovskaya et al. 2005c, 233VP dation List no. 102 – Effective publication: Im et al. (2004b) Roseivirga spongicola S.C. Lau et al. 2006b, 1063VP VP Rhodanobacter ginsengisoli Weon et al. 2007a, 2812 Roseomonas aquatica Gallego et al. 2006d, 2293VP VP Rhodanobacter spathiphylli De Clercq et al. 2006, 1758 Roseomonas lacus Jiang et al. 2006, 26VP VP Rhodanobacter terrae Weon et al. 2007a, 2812 Roseomonas terrae J.H. Yoon et al. 2007xxiv, 2486VP VP Rhodanobacter thiooxydans C.S. Lee et al. 2007, 1777 Roseospira goensis Kalyan Chakravarthy et al. 2007, 2456VP VP Rhodobacter changlensis Anil Kumar et al. 2007d, 2570 Roseospira visakhapatnamensis Kalyan Chakravarthy et al. 2007, Rhodobacter massiliensis Greub and Raoult 2006, 2026VP – Valid 2454VP publication: Validation List no. 111 – Effective publication: Roseovarius crassostreae Boettcher et al. 2005, 1535VP Greub and Raoult (2003) Roseovarius mucosus Biebl et al. 2005b, 2382VP Rhodobacter vinaykumarii Srinivas et al. 2007d, 1985VP Rothia aeria Y. Li et al. 2004b, 833VP Rhodobium gokarnense Srinivas et al. 2007b, 934VP Ruania albidiflava Q. Gu et al. 2007a, 812VP Rhodobium pfennigii Caumette et al. 2007, 1254VP Rubellimicrobium thermophilum Denner et al. 2006, 1360VP Rhodoblastus sphagnicola Kulichevskaya et al. 2006, 1401VP Rubritalea marina Scheuermayer et al. 2006, 2123VP Rhodococcus aetherivorans Goodfellow et al. 2004, 1005VP – Valid Rubritalea spongiae J. Yoon et al. 2007d, 2339VP publication: Validation List no. 98 – Effective publication: Goodfellow et al. (2004) Rubritalea squalenifaciens Kasai et al. 2007, 1633VP Rhodococcus baikonurensis Y. Li et al. 2004b, 833VP Rubritalea tangerina J. Yoon et al. 2007d, 2340VP Rhodococcus gordoniae A.L. Jones et al. 2004, 409VP Rubrivivax benzoatilyticus Ramana et al. 2006, 2162VP Rhodococcus imtechensis Ghosh et al. 2006, 1968VP Rubrobacter taiwanensis M.Y. Chen et al. 2004, 1853VP Rhodococcus kroppenstedtii Mayilraj et al. 2006b, 981VP Ruegeria mobilis Muramatsu et al. 2007, 1307VP Rhodococcus kyotonensis B. Li et al. 2007b, 1957VP Ruegeria pelagia K. Lee et al. 2007a, 1817VP Rhodococcus phenolicus Rehfuss and Urban 2006, 499VP – Valid Runella defluvii Lu et al. 2007b, 2602VP publication: Validation List no. 108 – Effective publication: Runella limosa Ryu et al. 2006, 2759VP Rehfuss and Urban (2005b) Saccharibacter floricola Jojima et al. 2004, 2267VP VP Rhodococcus qingshengii J.L. Xu et al. 2007, 2756 Saccharophagus degradans Ekborg et al. 2005, 1548VP VP Rhodococcus triatomae Yassin 2005, 1578 Saccharothrix algeriensis Zitouni et al. 2004, 1380VP VP Rhodococcus yunnanensis Y.Q. Zhang et al. 2005b, 1135 Saccharothrix xinjiangensis Hu et al. 2004, 2093VP VP Rhodonellum psychrophilum Schmidt et al. 2006, 2891 Salegentibacter agarivorans Nedashkovskaya et al. 2006c, 884VP VP Rhodopirellula baltica Schlesner et al. 2004, 1577 Salegentibacter catena Ying et al. 2007a, 221VP VP Rhodovarius lipocyclicus Kämpfer et al. 2004, 1909 – Valid publi- Salegentibacter flavus Ivanova et al. 2006a, 585VP cation: Validation List no. 100 – Effective publication: Kämp- VP fer et al. (2004b) Salegentibacter holothuriorum Nedashkovskaya et al. 2004g, 1109 VP Rhodovulum imhoffii Srinivas et al. 2007a, 231VP Salegentibacter mishustinae Nedashkovskaya et al. 2005j, 237 VP Rhodovulum marinum Srinivas et al. 2006, 1655VP Salegentibacter salarius J.H. Yoon et al. 2007iii, 2740 VP Rhodovulum visakhapatnamense Srinivas et al. 2007c, 1764VP Salicola marasensis Maturrano et al. 2006, 1690 VP Rickettsia asiatica Fujita et al. 2006, 2367VP Salicola salis Kharroub et al. 2006a, 2650 VP Rickettsia heilongjiangensis Fournier et al. 2006, 499VP – Valid Salimicrobium luteum J.H. Yoon et al. 2007xxi, 2409 publication: Validation List no. 108 – Effective publication: Salinibacillus aidingensis Ren and Zhou 2005, 952VP Fournier et al. (2003) Salinibacillus kushneri Ren and Zhou 2005, 952VP Rickettsia tamurae Fournier et al. 2006, 1674VP Salinicoccus jeotgali Aslam et al. 2007b, 637VP Robiginitalea biformata J.C. Cho and Giovannoni 2004a, 1105VP Salinicoccus kunmingensis Y.G. Chen et al. 2007, 2330VP Robiginitomaculum antarcticum K. Lee et al. 2007b, 2598VP Salinicoccus luteus Y.Q. Zhang et al. 2007c, 1903VP Roseburia faecis Duncan et al. 2006, 2440VP Salinicoccus salsiraiae França et al. 2007, 433VP – Valid publica- Roseburia hominis Duncan et al. 2006, 2440VP tion: Validation List no. 114 – Effective publication: França Roseburia inulinivorans Duncan et al. 2006, 2440VP et al. (2006a) VP Roseibacterium elongatum T. Suzuki et al. 2006, 420VP Salinicoccus siamensis Pakdeeto et al. 2007, 2006 VP Roseicyclus mahoneyensis Rathgeber et al. 2005, 1602VP Salinimonas chungwhensis Jeon et al. 2005c, 242 VP Roseisalinus antarcticus Labrenz et al. 2005, 46VP Salinispora arenicola Maldonado et al. 2005, 1764 APPENDIX 1 1349

Salinispora tropica Maldonado et al. 2005, 1764VP Shewanella psychrophila Xiao et al. 2007, 64VP Salipiger mucosus corrig. Martínez-Cánovas et al. 2004d, 1739VP Shewanella sediminis Zhao et al. 2005, 1517VP Salirhabdus euzebyi Albuquerque et al. 2007, 1569VP Shewanella spongiae S.H. Yang et al. 2006, 2881VP Salmonella subterranea Shelobolina et al. 2005, 547VP – Valid Shewanella surugensis Miyazaki et al. 2006, 1612VP publication: Validation List no. 102 – Effective publication: Shimazuella kribbensis D.J. Park et al. 2007, 2663VP Shelobolina et al. (2004) Shimia marina Choi and Cho 2006, 1872VP Salsuginibacillus kocurii Carrasco et al. 2007b, 2384VP Shinella granuli D.S.An et al. 2006a, 446VP Sandarakinorhabdus limnophila Gich and Overmann 2006, 853VP Shinella zoogloeoides D.S. An et al. 2006a, 447VP Sandarakinotalea sediminis Khan et al. 2006b, 962VP Silanimonas lenta E.M. Lee et al. 2005, 387VP Sanguibacter marinus Huang et al. 2005a, 1756VP Silvimonas terrae H.C. Yang et al. 2005, 2332VP Schlegelella aquatica Y.J. Chou et al. 2006, 2796VP Simplicispira limi Lu et al. 2007a, 33VP Schlesneria paludicola Kulichevskaya et al. 2007, 2686VP Sinococcus qinghaiensis W.J. Li et al. 2006d, 1191VP Sedimenticola selenatireducens Narasingarao and Häggblom 2006, The name Sinococcus qinghaiensis W.J. Li et al. 2006d is illegiti- 2507VP – Valid publication: Validation List no. 112 – Effective mate because it is placed in an illegitimate genus (see above publication: Narasingarao and Häggblom (2006) Sinococcus W.J. Li et al. 2006d, 1191VP) Sediminibacter furfurosus Khan et al. 2007b, 267VP Sinorhizobium americanum corrig. Toledo et al. 2004, 1909VP – VP Sediminicola luteus Khan et al. 2006c, 843 Valid publication: Validation List no. 100 – Effective publica- Sediminitomix flava Khan et al. 2007d, 1692VP tion: Toledo et al. (2003) Segetibacter koreensis D.S. An et al. 2007a, 1831VP Skermanella aerolata Weon et al. 2007b, 1541VP Segniliparus rotundus Butler et al. 2005, 1622VP Slackia faecicanis Lawson et al. 2005c, 1245VP Segniliparus rugosus Butler et al. 2005, 1622VP Smaragdicoccus niigatensis Adachi et al. 2007, 300VP Sejongia antarctica Yi et al. 2005b, 414VP Sneathiella chinensis Jordan et al. 2007, 119VP Sejongia jeonii Yi et al. 2005b, 414VP Solimonas soli M.K. Kim et al. 2007a, 2593VP Sejongia marina K. Lee et al. 2007c, 2919VP Solirubrobacter soli M.K. Kim et al. 2007c, 1454VP Serinicoccus marinus Yi et al. 2004c, 1587VP Sphaerisporangium cinnabarinum corrig. Ara and Kudo 2007, VP Serratia ureilytica Bhadra et al. 2005, 2157VP 2449 – Valid publication: Validation List no. 118 – Effective publication: Ara and Kudo (2007b) Shewanella abyssi Miyazaki et al. 2006, 1611VP Sphaerisporangium melleum corrig. Ara and Kudo 2007, 2449VP – Shewanella affinis Ivanova et al. 2004h, 1092VP Valid publication: Validation List no. 118 – Effective publica- Shewanella algidipiscicola Satomi et al. 2007, 351VP tion: Ara and Kudo (2007b) Shewanella aquimarina J.H. Yoon et al. 2004n, 2351VP Sphaerisporangium rubeum corrig. Ara and Kudo 2007, 2449VP – Shewanella atlantica Zhao et al. 2007, 2159VP Valid publication: Validation List no. 118 – Effective publica- Shewanella canadensis Zhao et al. 2007, 2159VP tion: Ara and Kudo (2007b) VP Shewanella decoloratinonis M. Xu et al. 2005, 366VP Sphingobacterium composti Ten et al. 2007, 1372 – Valid publi- cation: Validation List no. 116 – Effective publication: Ten VP Shewanella donghaensis S.H. Yang et al. 2007, 210 et al. (2006d) VP Shewanella gaetbuli J.H. Yoon et al. 2004c, 490 Sphingobacterium composti Yoo et al. 2007b, 1592VP VP Shewanella glacialipiscicola Satomi et al. 2007, 351 Sphingobacterium composti Yoo et al. 2007b is a later homonym of Shewanella hafniensis Satomi et al. 2006b, 247VP Sphingobacterium composti Ten et al. 2007 Shewanella halifaxensis Zhao et al. 2006, 209VP Sphingobacterium daejeonense K.H. Kim et al. 2006, 2035VP Shewanella haliotis D. Kim et al. 2007, 2928VP Sphingobium aromaticiconvertens Wittich et al. 2007b, 308VP Shewanella irciniae O.O. Lee et al. 2006b, 2873VP Sphingobium francense Pal et al. 2005, 1971VP Shewanella kaireitica Miyazaki et al. 2006, 1610VP Sphingobium fuliginis Prakash and Lal 2006, 2150VP Shewanella loihica Gao et al. 2006, 1914VP Sphingobium indicum Pal et al. 2005, 1970VP Shewanella marisflavi J.H. Yoon et al. 2004n, 2351VP Sphingobium japonicum Pal et al. 2005, 1971VP Shewanella morhuae Satomi et al. 2006b, 247VP Sphingobium olei C.C. Young et al. 2007b, 2615VP Shewanella pacifica Ivanova et al. 2004e, 1085VP Sphingomonas abaci Busse et al. 2005, 2568VP Shewanella piezotolerans Xiao et al. 2007, 64VP Sphingomonas azotifigens Xie and Yokota 2006b, 892VP Shewanella pneumatophori Hirota et al. 2005, 2358VP Sphingomonas desiccabilis Reddy and Garcia-Pichel 2007, 1032VP Shewanella profunda Toffin et al. 2004, 1947VP Sphingomonas dokdonensis J.H. Yoon et al. 2006p, 2167VP 1350 APPENDIX 1

Sphingomonas fennica Wittich et al. 2007a, 1744VP Stenotrophomonas koreensis H.C. Yang et al. 2006a, 83VP Sphingomonas haloaromaticamans Wittich et al. 2007a, 1744VP Stenotrophomonas terrae Heylen et al. 2007, 2059VP Sphingomonas jaspsi Asker et al. 2007b, 1440VP Stigmatella hybrida Reichenbach 2007, 894VP – Valid publication: Sphingomonas kaistensis M.K. Kim et al. 2007d, 1533VP Validation List no. 115 – Effective publication: Reichenbach (2005f) Sphingomonas molluscorum Romanenko et al. 2007b, 361VP Streptacidiphilus jiangxiensis Huang et al. 2005, 1744VP – Valid Sphingomonas mucosissima Reddy and Garcia-Pichel 2007, publication: Validation List no. 105 – Effective publication: 1031VP Huang et al. (2004a) Sphingomonas oligophenolica Ohta et al. 2004, 2188VP Streptacidiphilus oryzae L. Wang et al. 2006, 1260VP Sphingomonas panni Busse et al. 2005, 2568VP Streptococcus castoreus Lawson et al. 2005b, 845VP Sphingomonas phyllosphaerae Rivas et al. 2004a, 2148VP Streptococcus devriesei Collins et al. 2004, 631VP – Valid publica- VP Sphingomonas pseudosanguinis Kämpfer et al. 2007c, 1344 tion: Validation List no. 97 – Effective publication: Collins Sphingomonas soli D.C. Yang et al. 2006, 706VP et al. (2004c) Sphingomonas yabuuchiae Y. Li et al. 2004a, 824VP Streptococcus halichoeri Lawson et al. 2004a, 1756VP Sphingomonas yunnanensis Y.Q. Zhang et al. 2005a, 2363VP Streptococcus ictaluri Shewmaker et al. 2007, 1606VP Sphingopyxis baekryungensis J.H. Yoon et al. 2005s, 1226VP Streptococcus marimammalium Lawson et al. 2005a, 272VP Sphingopyxis flavimaris J.H. Yoon and Oh 2005a, 371VP Streptococcus massiliensis Glazunova et al. 2006a, 1130VP Sphingosinicella microcystinivorans Maruyama et al. 2006, 88VP Streptococcus minor Vancanneyt et al. 2004a, 451VP Sphingosinicella xenopeptidilytica Geueke et al. 2007, 111VP Streptococcus orisuis Takada and Hirasawa 2007, 1274VP Spirochaeta bajacaliforniensis Fracek and Stolz 2004, 631VP – Valid Streptococcus pseudopneumoniae Arbique et al. 2005, 1VP – Valid publication: Validation List no. 97 – Effective publication: publication: Validation List no. 101 – Effective publication: Fracek and Stolz (1985) Arbique et al. (2004) Spirochaeta coccoides Dröge et al. 2006, 1460VP – Valid publica- Streptococcus pseudoporcinus Bekal et al. 2007, 894VP – Valid publi- tion: Validation List no. 110 – Effective publication: Dröge cation: Validation List no. 115 – Effective publication: Bekal et al. (2006) et al. (2006) Spiroplasma atrichopogonis Koerber et al. 2005, 291VP Streptomyces africanus Meyers et al. 2004, 1534VP Spiroplasma leucomae Oduori et al. 2005, 2449VP Streptomyces bangladeshensis Al-Bari et al. 2005, 1976VP Spiroplasma penaei Nunan et al. 2005, 2320VP Streptomyces cheonanensis H.J. Kim et al. 2006, 474VP Spirosoma rigui Baik et al. 2007c, 2872VP Streptomyces drozdowiczii Semêdo et al. 2004, 1327VP Sporacetigenium mesophilum S. Chen et al. 2006, 724VP Streptomyces durmitorensis Savic et al. 2007, 2121VP Sporomusa rhizae Gößner et al. 2006, 1460VP – Valid publica- Streptomyces emeiensis Sun et al. 2007, 1637VP tion: Validation List no. 110 – Effective publication: Gößner Streptomyces ferralitis Saintpierre-Bonaccio et al. 2004a, 2063VP et al. (2006) Streptomyces glauciniger Huang et al. 2004c, 2087VP Sporosarcina koreensis S.W. Kwon et al. 2007b, 1697VP Streptomyces guanduensis C. Xu et al. 2006, 1113VP Sporosarcina saromensis S.Y. An et al. 2007c, 1870VP Streptomyces hainanensis Jiang et al. 2007, 2697VP Sporosarcina soli S.W. Kwon et al. 2007b, 1697VP Streptomyces hebeiensis P. Xu et al. 2004a, 729VP Sporotalea propionica Boga et al. 2007, 894VP – Valid publication: VP Validation List no. 115 – Effective publication: Boga et al. Streptomyces jietaisiensis He et al. 2005, 1941 (2007) Streptomyces koyangensis J.Y. Lee et al. 2005, 260VP Stackebrandtia nassauensis Labeda and Kroppenstedt 2005, Streptomyces paucisporeus C. Xu et al. 2006, 1113VP VP 1690 Streptomyces pharetrae le Roes and Meyers 2005, 2236VP – Valid Staphylococcus pettenkoferi Trülzsch et al. 2007, 1547VP publication: Validation List no. 106 – Effective publication: le Staphylococcus pseudintermedius Devriese et al. 2005, 1571VP Roes and Meyers (2005) VP Staphylococcus simiae Pantu˙ček et al. 2005, 1957VP Streptomyces radiopugnans Mao et al. 2007, 2581 VP Stappia alba Pujalte et al. 2006, 3VP – Valid publication: Validation Streptomyces rubidus C. Xu et al. 2006, 1113 List no. 107 – Effective publication: Pujalte et al. (2005a) Streptomyces scabrisporus P. Xu et al. 2004b, 580VP Stappia marina B.C. Kim et al. 2006, 78VP Streptomyces sodiiphilus W.J. Li et al. 2005f, 1332VP Starkeya koreensis Im et al. 2006a, 2412VP Streptomyces synnematoformans Hozzein and Goodfellow 2007, VP Stenothermobacter spongiae S.C. Lau et al. 2006a, 184VP 2012 VP Stenotrophomonas dokdonensis J.H. Yoon et al. 2006f, 1366VP Streptomyces vietnamensis Zhu et al. 2007, 1773 Stenotrophomonas humi Heylen et al. 2007, 2060VP Streptomyces yanglinensis C. Xu et al. 2006, 1114VP APPENDIX 1 1351

Streptomyces yanii Z. Liu et al. 2005b, 1608VP Tepidibacter formicigenes Urios et al. 2004a, 442VP Streptomyces yeochonensis S.B. Kim et al. 2004b, 213VP Tepidicella xavieri França et al. 2006b, 911VP Streptosporangium purpuratum L.P. Zhang et al. 2005, 723VP Tepidimicrobium ferriphilum Slobodkin et al. 2006b, 371VP Streptosporangium yunnanense L.P. Zhang et al. 2005, 723VP Tepidimonas taiwanensis T.L. Chen et al. 2006, 1460VP – Valid Subdoligranulum variabile Holmstrøm et al. 2004, 1909VP – Valid publication: Validation List no. 110 – Effective publication: publication: Validation List no. 100 – Effective publication: T.L. Chen et al. (2006) Holmstrøm et al. (2004) Tepidimonas thermarum Albuquerque et al. 2007, 1VP – Valid pub- Subsaxibacter broadyi Bowman and Nichols 2005, 1481VP lication: Validation List no. 113 – Effective publication: Albu- querque et al. (2006) Subsaximicrobium saxinquilinus Bowman and Nichols 2005, VP 1481VP Terrabacter aerolatus Weon et al. 2007i, 2108 VP Subsaximicrobium wynnwilliamsii Bowman and Nichols 2005, Terrabacter terrae Montero-Barrientos et al. 2005, 2493 1481VP Terribacillus halophilus S.Y. An et al. 2007a, 54VP Sulfitobacter delicatus Ivanova et al. 2004f, 478VP Terribacillus saccharophilus S.Y. An et al. 2007a, 54VP Sulfitobacter donghicola J.H. Yoon et al. 2007x, 1791VP Terriglobus roseus Eichorst et al. 2007, 1933VP – Valid publication: Sulfitobacter dubius Ivanova et al. 2004f, 479VP Validation List no. 117 – Effective publication: Eichorst et al. (2007) Sulfitobacter litoralis J.R. Park et al. 2007, 694VP Terrimonas lutea Xie and Yokota 2006c, 1120VP Sulfitobacter marinus J.H. Yoon et al. 2007xiv, 304VP Tetragenococcus koreensis M. Lee et al. 2005, 1412VP Sulfobacillus sibiricus Melamud et al. 2006, 499VP – Valid publica- VP tion: Validation List no. 108 – Effective publication: Melamud Tetrasphaera jenkinsii McKenzie et al. 2006, 2288 et al. (2003) Tetrasphaera remsis Osman et al. 2007, 2752VP Sulfobacillus thermotolerans Bogdanova et al. 2006, 1041VP Tetrasphaera vanveenii McKenzie et al. 2006, 2288VP Sulfuricurvum kujiense Kodama and Watanabe 2004, 2299VP Tetrasphaera veronensis McKenzie et al. 2006, 2288VP Sulfurihydrogenibium azorense Aguiar et al. 2004, 37VP Tetrathiobacter kashmirensis Ghosh et al. 2005, 1786VP Sulfurihydrogenibium yellowstonense S. Nakagawa et al. 2005b, Tetrathiobacter mimigardefordensis Wübbeler et al. 2006, 1308VP 2267VP Thalassobacillus devorans García et al. 2005, 1793VP Sulfurimonas paralvinellae Takai et al. 2006b, 1731VP Thalassobacter stenotrophicus Macián et al. 2005a, 109VP Sulfurivirga caldicuralii Takai et al. 2006a, 1927VP Thalassobius aestuarii Yi and Chun 2007, 894VP – Valid publica- Sulfurospirillum cavolei Kodama et al. 2007, 829VP tion: Validation List no. 115 – Effective publication: Yi and Chun (2006a) Sulfurovum lithotrophicum Inagaki et al. 2004, 1481VP Thalassobius mediterraneus Arahal et al. 2005, 2374VP Sutterella stercoricanis Greetham et al. 2004a, 1583VP Thalassococcus halodurans O.O. Lee et al. 2007, 1923VP Suttonella ornithocola Foster et al. 2005, 2271VP Thalassolituus oleivorans Yakimov et al. 2004, 146VP Swaminathania salitolerans Loganathan and Nair 2004, 1189VP Thalassomonas agarivorans Jean et al. 2006c, 1249VP Syntrophobacter sulfatireducens S. Chen et al. 2005, 1323VP Thalassomonas ganghwensis Yi et al. 2004a, 379VP Syntrophomonas cellicola C. Wu et al. 2006, 2334VP Thalassomonas loyana Thompson et al. 2006, 366VP Syntrophomonas curvata C. Zhang et al. 2004, 972VP Thalassospira profundimaris C. Liu et al. 2007, 318VP Syntrophomonas erecta C. Zhang et al. 2005, 802VP Thalassospira xiamenensis C. Liu et al. 2007, 318VP Syntrophomonas palmitatica Hatamoto et al. 2007, 2141VP Thermaerobacter litoralis Tanaka et al. 2006, 1533VP Syntrophomonas zehnderi Sousa et al. 2007, 613VP Thermincola carboxydiphila Sokolova et al. 2005, 2072VP Tamlana crocina S.D. Lee 2007, 767VP Thermincola ferriacetica Zavarzina et al. 2007, 894VP – Valid publi- Telmatospirillum siberiense Sizova et al. 2007, 1372VP – Valid publi- cation: Validation List no. 115 – Effective publication: Zavar- cation: Validation List no. 116 – Effective publication: Sizova zina et al. (2007) et al. (2007) Thermoanaerobacter pseudethanolicus Onyenwoke et al. 2007, 2192VP Tenacibaculum aestuarii Jung et al. 2006c, 1580VP Thermoanaerobacter sulfurigignens Y.J. Lee et al. 2007a, 1433VP Tenacibaculum litopenaei Sheu et al. 2007, 1150VP Thermoanaerobacterium aciditolerans Kublanov et al. 2007, 263VP Tenacibaculum litoreum Choi et al. 2006, 639VP Thermobacillus composti Watanabe et al. 2007, 1476VP Tenacibaculum lutimaris J.H. Yoon et al. 2005g, 797VP Thermococcus barossii Duffaud et al. 2005, 548VP – Valid publica- VP Tenacibaculum skagerrakense Frette et al. 2004, 523 tion: Validation List no. 102 – Effective publication: Duffaud Tenuibacillus multivorans Ren and Zhou 2005, 98VP et al. (1998) Tepidanaerobacter syntrophicus Sekiguchi et al. 2006, 1627VP Thermococcus celericrescens Kuwabara et al. 2007, 442VP 1352 APPENDIX 1

Thermococcus coalescens Kuwabara et al. 2005, 2512VP Thiorhodococcus kakinadensis Anil Kumar et al. 2007a, 2461VP Thermococcus kodakarensis corrig. Atomi et al. 2005, 984VP – Valid Thiorhodococcus mannitoliphagus Rabold et al. 2006, 1949VP publication: Validation List no. 103 – Effective publication: Thiovirga sulfuroxydans Ito et al. 2005, 1063VP Atomi et al. (2004) Thorsellia anophelis Kämpfer et al. 2006f, 337VP Thermococcus thioreducens Pikuta et al. 2007, 1617VP Trabulsiella odontotermitis J.H. Chou et al. 2007a, 699VP Thermodesulfatator indicus Moussard et al. 2004, 232VP Treponema azotonutricium Graber et al. 2004, 631VP – Valid publi- VP Thermodesulfobium narugense Mori et al. 2004, 1 – Valid pub- cation: Validation List no. 97 – Effective publication: Graber lication: Validation List no. 95 – Effective publication: Mori et al. (2004) et al. (2003) Treponema berlinense Nordhoff et al. 2005, 1678VP Thermogymnomonas acidicola Itoh et al. 2007, 2561VP Treponema porcinum Nordhoff et al. 2005, 1678VP Thermolithobacter carboxydivorans Sokolova et al. 2007, 1372VP – Treponema primitia Graber et al. 2004, 631VP – Valid publica- Valid publication: Validation List no. 116 – Effective publica- tion: Validation List no. 97 – Effective publication: Graber tion: Sokolova et al. (2007) et al. (2004) Thermolithobacter ferrireducens Sokolova et al. 2007, 1372VP – Valid Treponema putidum Wyss et al. 2004, 1121VP publication: Validation List no. 116 – Effective publication: Sokolova et al. (2007) Trichococcus patagoniensis Pikuta et al. 2006a, 2060VP Thermomonas koreensis M.K. Kim et al. 2006, 1618VP Truepera radiovictrix Albuquerque et al. 2005 (complete author- ship reads Albuquerque, da Costa and Rainey), 1744VP – Valid Thermosediminibacter litoriperuensis Lee et al. 2006, 925VP – Valid publication: Validation List no. 105 – Effective publication: publication: Validation List no. 109 – Effective publication: Albuquerque et al. (2005) Y.J. Lee et al. (2005) Tsukamurella pseudospumae S.W. Nam et al. 2004, 1211VP Thermosediminibacter oceani Lee et al. 2006, 925VP – Valid publica- tion: Validation List no. 109 – Effective publication: Y.J. Lee Tsukamurella spongiae Olson et al. 2007, 1480VP et al. (2005) Tuberibacillus calidus Hatayama et al. 2006, 2549VP Thermosinus carboxydivorans Sokolova et al. 2004, 2358VP Ulvibacter antarcticus Choi et al. 2007, 2923VP Thermosipho atlanticus Urios et al. 2004b, 1956VP Ulvibacter litoralis Nedashkovskaya et al. 2004c, 121VP Thermovibrio ammonificans Vetriani et al. 2004, 180VP Undibacterium pigrum Kämpfer et al. 2007d, 1514VP Thermovibrio guaymasensis L’Haridon et al. 2006, 2850VP Ureibacillus composti Weon et al. 2007h, 2910VP Thermovirga lienii Dahle and Birkeland 2006, 1544VP Ureibacillus suwonensis B.Y. Kim et al. 2006a, 665VP Thioalkalimicrobium microaerophilum Sorokin et al. 2007, 894VP – Ureibacillus thermophilus Weon et al. 2007h, 2911VP Valid publication: Validation List no. 115 – Effective publica- Uruburuella suis Vela et al. 2005, 646VP tion: Sorokin et al. (2007a) Vagococcus carniphilus Shewmaker et al. 2004, 1508VP Thioalkalivibrio halophilus corrig. Banciu et al. 2005, 548VP – Valid VP publication: Validation List no. 102 – Effective publication: Vagococcus elongatus Lawson et al. 2007, 753 Banciu et al. (2004) Variovorax dokdonensis J.H. Yoon et al. 2006h, 813VP Thioalkalivibrio thiocyanodenitrificans corrig. Sorokin et al. 2005, Variovorax soli B.Y. Kim et al. 2006g, 2901VP 1396VP – Valid publication: Validation List no. 104 – Effective Veillonella denticariosi Byun et al. 2007, 2847VP publication: Sorokin et al. (2004) Veillonella montpellierensis Jumas-Bilak et al. 2004, 1315VP Thiobacter subterraneus Hirayama et al. 2005, 471VP Vibrio comitans Sawabe et al. 2007, 920VP Thiocapsa marina Caumette et al. 2004, 1035VP Vibrio crassostreae Faury et al. 2004, 2139VP Thioclava pacifica Sorokin et al. 2005, 1074VP Vibrio ezurae Sawabe et al. 2005, 1VP – Valid publication: Validation Thiohalomonas denitrificans Sorokin et al. 2007c, 1587VP List no. 101 – Effective publication: Sawabe et al. (2004a) Thiohalomonas nitratireducens Sorokin et al. 2007c, 1588VP Vibrio gallicus Sawabe et al. 2004b, 845VP Thiohalophilus thiocyanatoxydans corrig. Sorokin et al. 2007, Vibrio gigantis Le Roux et al. 2005, 2254VP 1933VP – Valid publication: Validation List no. 117 – Effective Vibrio hispanicus Gomez-Gil et al. 2004, 263VP publication: Sorokin et al. (2007b) Vibrio inusitatus Sawabe et al. 2007, 921VP Thiomicrospira arctica Knittel et al. 2005, 784VP Vibrio litoralis Y.D. Nam et al. 2007a, 564VP Thiomicrospira halophila Sorokin et al. 2006b, 2379VP Vibrio neonatus Sawabe et al. 2005, 1VP – Valid publication: Valida- Thiomicrospira psychrophila Knittel et al. 2005, 785VP tion List no. 101 – Effective publication: Sawabe et al. (2004a) Thiomicrospira thermophila Takai et al. 2004a, 2331VP Vibrio ponticus Macián et al. 2005, 1VP – Valid publication: Valida- Thioreductor micantisoli S. Nakagawa et al. 2005a, 603VP tion List no. 101 – Effective publication: Macián et al. (2004) Thiorhodococcus bheemlicus Anil Kumar et al. 2007a, 2460VP Vibrio rarus Sawabe et al. 2007, 920VP APPENDIX 1 1353

Vibrio rhizosphaerae Ramesh Kumar and Nair 2007, 2245VP Xenorhabdus szentirmaii Lengyel et al. 2005, 1396VP – Valid Virgibacillus dokdonensis J.H. Yoon et al. 2005d, 1836VP publication: Validation List no. 104 – Effective publication: Lengyel et al. (2005) Virgibacillus halophilus S.Y. An et al. 2007b, 1609VP Xylanibacter oryzae Ueki et al. 2006b, 2220VP Virgibacillus koreensis J.S. Lee et al. 2006b, 254VP Xylanibacterium ulmi Rivas et al. 2004e, 560VP Virgibacillus olivae Quesada et al. 2007, 908VP Yangia pacifica Dai et al. 2006, 531VP Volucribacter amazonae Christensen et al. 2004, 817VP Yania flava W.J. Li et al. 2005e, 1937VP Volucribacter psittacicida Christensen et al. 2004, 817VP The name Yania flava W.J. Li et al. 2005e is illegitimate because Vulcanibacillus modesticaldus L’Haridon et al. 2006, 1050VP the genus name is illegitimate (see above Yania W.J. Li et al. Wautersia numazuensis corrig. Kageyama et al. 2005, 1396VP – 2004a, 529VP). Valid publication: Validation List no. 104 – Effective publica- Yania halotolerans W.J. Li et al. 2004a, 530VP tion: C. Kageyama et al. (2005) The name Yania halotolerans W.J. Li et al. 2004a is illegitimate Wautersiella falsenii Kämpfer et al. 2006a, 2328VP because the genus name is illegitimate (see above Yania W.J. Li Wenxinia marina Ying et al. 2007b, 1714VP et al. 2004a, 529VP). Williamsia deligens Yassin and Hupfer 2006, 196VP Yeosuana aromativorans K.K. Kwon et al. 2006a, 731VP Williamsia marianensis Pathom-aree et al. 2006a, 1125VP Yersinia aleksiciae Sprague and Neubauer 2005, 834VP Williamsia maris Stach et al. 2004, 193VP Yonghaparkia alkaliphila J.H. Yoon et al. 2006k, 2418VP Williamsia serinedens Yassin et al. 2007c, 560VP Zeaxanthinibacter enoshimensis Asker et al. 2007a, 841VP Winogradskyella epiphytica Nedashkovskaya et al. 2005a, 53VP Zhihengliuella halotolerans Y.Q. Zhang et al. 2007a, 1020VP Winogradskyella eximia Nedashkovskaya et al. 2005a, 54VP Zhouia amylolytica Z.P. Liu et al. 2006a, 2827VP Winogradskyella poriferorum S.C. Lau et al. 2005b, 1591VP Zimmermannella alba Y.C. Lin et al. 2004, 1675VP Winogradskyella thalassocola Nedashkovskaya et al. 2005a, 52VP According to Rule 37a(1), Zimmermannella alba Y.C. Lin et al. Woodsholea maritima Abraham et al. 2004, 1233VP 2004 cannot be maintained in the genus Zimmermannella. Xanthomonas euvesicatoria Jones et al. 2006, 926VP – Valid publica- Zimmermannella bifida Y.C. Lin et al. 2004, 1675VP tion: Validation List no. 109 – Effective publication: J.B. Jones According to Rule 37a (1), Zimmermannella bifida Y.C. Lin et al. (2004) et al. 2004 cannot be maintained in the genus Zimmermannella. Xanthomonas fuscans Schaad et al. 2007, 895VP – Valid publica- Zimmermannella faecalis Y.C. Lin et al. 2004, 1675VP tion: Validation List no. 115 – Effective publication: Schaad According to Rule 37a (1), Zimmermannella faecalis Y.C. Lin et al. (2006) et al. 2004 cannot be maintained in the genus Zimmermannella. Xanthomonas perforans Jones et al. 2006, 926VP – Valid publica- Zimmermannella helvola Lin et al. 2004, 1674VP tion: Validation List no. 109 – Effective publication: J.B. Jones et al. (2004) Strict application of the Rule 51b(1) indicates that the genus name Zimmermannella helvola Y.C. Lin et al. 2004 Xenorhabdus budapestensis Lengyel et al. 2005, 1396VP – Valid is illegitimate. publication: Validation List no. 104 – Effective publication: VP Lengyel et al. (2005) Zobellella denitrificans Y.T. Lin and Shieh 2006, 1214 VP Xenorhabdus cabanillasii Tailliez et al. 2006, 2815VP Zobellella taiwanensis Y.T. Lin and Shieh 2006, 1214 VP Xenorhabdus doucetiae Tailliez et al. 2006, 2815VP Zobellia amurskyensis Nedashkovskaya et al. 2004f, 1647 VP Xenorhabdus ehlersii Lengyel et al. 2005, 1396VP – Valid publica- Zobellia laminariae Nedashkovskaya et al. 2004f, 1647 tion: Validation List no. 104 – Effective publication: Lengyel Zobellia russellii Nedashkovskaya et al. 2004f, 1647VP et al. (2005) Zoogloea oryzae Xie and Yokota 2006a, 622VP VP Xenorhabdus griffiniae Tailliez et al. 2006, 2815 Zunongwangia profunda corrig. Qin et al. 2007, 1372VP – Valid Xenorhabdus hominickii Tailliez et al. 2006, 2816VP publication: Validation List no. 116 – Effective publication: Xenorhabdus innexi Lengyel et al. 2005, 1396VP – Valid publica- Qin et al. (2007) tion: Validation List no. 104 – Effective publication: Lengyel et al. (2005) New subspecies VP Xenorhabdus koppenhoeferi Tailliez et al. 2006, 2816VP Alcaligenes faecalis subsp. phenolicus Rehfuss and Urban 2006, 1 – Valid publication: Validation List no. 107 – Effective publi- Xenorhabdus kozodoii Tailliez et al. 2006, 2816VP cation: Rehfuss and Urban (2005a) Xenorhabdus mauleonii Tailliez et al. 2006, 2816VP Bifidobacterium animalis subsp. animalis (Mitsuoka 1969) Scardovi VP Xenorhabdus miraniensis Tailliez et al. 2006, 2816 and Trovatelli 1974, 1142VP – Reference: Masco et al. (2004) VP Xenorhabdus romanii Tailliez et al. 2006, 2816 Caldanaerobacter subterraneus subsp. pacificus Fardeau et al. 2004, Xenorhabdus stockiae Tailliez et al. 2006, 2817VP 472VP 1354 APPENDIX 1

Caldanaerobacter subterraneus subsp. subterraneus (Fardeau Xanthomonas alfalfae subsp. citrumelonis Schaad et al. 2007, 895VP et al. 2000) Fardeau et al. 2004, 471VP – Valid publication: Validation List no. 115 – Effective publi- Enterobacter cloacae subsp. cloacae (Jordan 1890) Hormaeche and cation: Schaad et al. (2006) Edwards 1960, 1395VP – Valid publication: Validation List no. Xanthomonas citri subsp. citri (ex Hasse 1915) Gabriel et al. 1989, 104 – Effective publication: Hoffmann et al. (2005a) 895VP – Valid publication: Validation List no. 115 – Effective Francisella philomiragia subsp. noatunensis Mikalsen et al. 2007, 1964VP publication: Schaad et al. (2006) VP Francisella philomiragia subsp. philomiragia (Jensen et al. 1969) Xanthomonas fuscans subsp. aurantifolii Schaad et al. 2007, 895 Hollis et al. 1990, 1964VP – Valid publication: Validation List no. 115 – Effective publi- cation: Schaad et al. (2006) Lactobacillus delbrueckii subsp. indicus Dellaglio et al. 2005b, VP 403VP Xanthomonas fuscans subsp. fuscans Schaad et al. 2007, 895 – Valid publication: Validation List no. 115 – Effective publica- Lactobacillus kefiranofaciens subsp. kefiranofaciens Fujisawa et al. tion: Schaad et al. (2006) 1988, 555VP – Reference: Vancanneyt et al. (2004b) Zymomonas mobilis subsp. francensis Coton et al. 2006, 125VP Lactobacillus plantarum subsp. argentoratensis Bringel et al. 2005, 1633VP New combinations Lactobacillus plantarum subsp. plantarum (Orla-Jensen 1919) Acholeplasma pleciae (Tully et al. 1994) Knight Jr. 2004, 1952VP – Bergey et al. 1923, 1633VP – Reference: Bringel et al. (2005) Basonym: Mesoplasma pleciae Tully et al. 1994 Leucobacter chromiireducens subsp. chromiireducens Morais et al. Actinotalea fermentans (Bagnara et al. 1985) Yi et al. 2007b, 155VP 2005, 2774VP – Basonym: Cellulomonas fermentans Bagnara et al. 1985 Leucobacter chromiireducens subsp. solipictus Muir and Tan 2007, Aerococcus urinaeequi (Garvie 1988) Felis et al. 2005, 1327VP – 2774VP Basonym: Pediococcus urinaeequi (ex Mees 1934) Garvie 1988 Oceanobacillus oncorhynchi subsp. incaldanensis Romano et al. Aggregatibacter actinomycetemcomitans (Klinger 1912) Nørskov- 2006b, 808VP Lauritsen and Kilian 2006, 2143VP – Basonym: Actinobacillus Oceanobacillus oncorhynchi subsp. oncorhynchi Yumoto et al. 2005, actinomycetemcomitans (Klinger 1912) Topley and Wilson 1929 809VP – Reference: Romano et al. (2006b) (Approved Lists 1980) Photorhabdus asymbiotica subsp. asymbiotica Fischer-Le Saux et al. Aggregatibacter aphrophilus (Khairat 1940) Nørskov-Lauritsen 1999, 1309VP – Reference: Akhurst et al. (2004) and Kilian 2006, 2143VP – Basonym: Hemophilus aphrophilus Photorhabdus asymbiotica subsp. australis Akhurst et al. 2004, Khairat 1940 (Approved Lists 1980) 1309VP Aggregatibacter segnis (Kilian 1977) Nørskov-Lauritsen and Kil- VP Photorhabdus luminescens subsp. kayaii Hazir et al. 2004, 1005VP ian 2006, 2144 – Basonym: Hemophilus segnis Kilian 1977 – Valid publication: Validation List no. 98 – Effective publica- (Approved Lists 1980) tion: Hazir et al. (2004) Agromyces hippuratus (Zgurskaya et al. 1992) Ortiz-Martinez VP Photorhabdus luminescens subsp. thracensis Hazir et al. 2004, et al. 2004, 1555 – Basonym: Agromyces fucosus subsp. hippu- 1005VP – Valid publication: Validation List no. 98 – Effective ratus Zgurskaya et al. 1992 publication: Hazir et al. (2004) Algicola bacteriolytica (Sawabe et al. 1998) Ivanova et al. 2004d, 1784VP Pseudomonas chlororaphis subsp. chlororaphis (Guignard and Sau- – Basonym: Pseudoalteromonas bacteriolytica Sawabe et al. 1998 vageau 1894) Bergey et al. 1930, 1289VP Algicola sagamiensis (Kobayashi et al. 2003) Y.D. Nam et al. 2007b, 17VP Salinivibrio costicola subsp. alcaliphilus Romano et al. 2005, 984VP – Basonym: Pseudoalteromonas sagamiensis Kobayashi et al. 2003 – Valid publication: Validation List no. 103 – Effective publi- Algoriphagus alkaliphilus (Tiago et al. 2006) Nedashkovskaya cation: Romano et al. (2005a) et al. 2007b, 1993VP – Basonym: Chimaereicella alkaliphila Tiago Salmonella enterica subsp. enterica (ex Kauffmann and Edwards et al. 2006a 1952) Le Minor and Popoff 1987, 519VP – Reference: Judicial Algoriphagus boritolerans (Ahmed et al. 2007c) Nedashkovskaya Commission of the International Committee on Systematics et al. 2007b, 1993VP – Basonym: Chimaereicella boritolerans of Prokaryotes 2005b (Opinion 80) Ahmed et al. 2007c Streptococcus equi subsp. ruminatorum Fernández et al. 2004, Algoriphagus halophilus (Yi and Chun 2004) Nedashkovskaya et 2295VP al. 2004h, 1763VP – Basonym: Hongiella halophila Yi and Chun Thermoanaerobacter mathranii subsp. alimentarius Carlier et al. 2004a 2007, 1VP – Valid publication: Validation List no. 113 – Effec- Algoriphagus mannitolivorans (Yi and Chun 2004) Nedashkovs- tive publication: Carlier et al. (2006) kaya et al. 2007b, 1993VP – Basonym: Hongiella mannitolivorans Thermoanaerobacter mathranii subsp. mathranii Larsen et al. 1998, Yi and Chun 2004a 1VP – Valid publication: Validation List no. 113 – Effective Algoriphagus marincola (Yoon et al. 2004) Nedashkovskaya et al. 2007b, publication: Carlier et al. (2006) 1993VP – Basonym: Hongiella marincola J.H. Yoon et al. 2004o Xanthomonas alfalfae subsp. alfalfae (ex Riker et al. 1935) Schaad Algoriphagus ornithinivorans (Yi and Chun 2004) Nedashkovs- et al. 2007, 895VP – Valid publication: Validation List no. 115 kaya et al. 2007b, 1993VP – Basonym: Hongiella ornithinivorans – Effective publication: Schaad et al. (2006) Yi and Chun 2004a APPENDIX 1 1355

Alicyclobacillus disulfidooxidans (Dufresne et al. 1996) Karavaiko Brachyspira intermedia (Stanton et al. 1997) Hampson and La et al. 2005, 946VP – Basonym: Sulfobacillus disulfidooxidans 2006, 1011VP – Basonym: Serpulina intermedia Stanton et al. Dufresne et al. 1996 1997 Aliivibrio fischeri (Beijerinck 1889) Urbanczyk et al. 2007, 2827VP Brachyspira murdochii (Stanton et al. 1997) Hampson and La 2006, – Basonym: Vibrio fischeri (Beijerinck 1889) Lehmann and 1011VP – Basonym: Serpulina murdochii Stanton et al. 1997 Neumann 1896 (Approved Lists 1980) Caldanaerobacter subterraneus (Fardeau et al. 2000) Fardeau et Aliivibrio logei (Harwood et al. 1980) Urbanczyk et al. 2007, al. 2004, 471VP – Basonym: Thermoanaerobacter subterraneus 2827VP – Basonym: Photobacterium logei (ex Bang et al. 1978) Fardeau et al. 2000 Harwood et al. 1980 Caldanaerobacter subterraneus subsp. tengcongensis (Xue et al. Aliivibrio salmonicida (Egidius et al. 1986) Urbanczyk et al. 2007, 2001) Fardeau et al. 2004, 472VP – Basonym: Thermoanaer- 2827VP – Basonym: Vibrio salmonicida Egidius et al. 1986 obacter tengcongensis Xue et al. 2001 Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, Caldanaerobacter subterraneus subsp. yonseiensis (Kim et al. 2001) 2828VP – Basonym: Vibrio wodanis Lunder et al. 2000 Fardeau et al. 2004, 472VP – Basonym: Thermoanaerobacter yon- Alkalibacillus haloalkaliphilus (Fritze 1996) Jeon et al. 2005b, seiensis Kim et al. 2001 1894VP – Basonym: Bacillus haloalkaliphilus Fritze 1996 Caldicellulosiruptor acetigenus (Nielsen et al. 1994) Onyenwoke VP Altererythrobacter luteolus (Yoon et al. 2005) K.K. Kwon et al. 2007, et al. 2006, 1394 – Basonym: Thermoanaerobium acetigenum 2210VP – Basonym: Erythrobacter luteolus J.H. Yoon et al. 2005a Nielsen et al. 1994 Alysiella crassa (Schmid 1922) Xie and Yokota 2005, 1395VP – Carboxydothermus ferrireducens (Slobodkin et al. 1997) Slobodkin VP Basonym: Simonsiella crassa Schmid 1922 (Approved Lists et al. 2006a, 2350 – Basonym: Thermoterrabacterium ferrire- 1980) – Valid publication: Validation List no. 104 – Effective ducens Slobodkin et al. 1997 publication: Xie and Yokota (2005a) Castellaniella defragrans (Foss et al. 1998) Kämpfer et al. 2006d, VP Amycolatopsis lurida (Lechevalier et al. 1986) Stackebrandt et al. 818 – Basonym: Alcaligenes defragrans Foss et al. 1998 2004a, 267VP – Basonym: Amycolatopsis orientalis subsp. lurida Catellatospora methionotrophica (Asano and Kawamoto 1988) Ara (ex Grundy et al. 1957) Lechevalier et al. 1986 and Kudo 2006, 399VP – Basonym: Catellatospora citrea subsp. Aquimarina brevivitae (Yoon et al. 2006) Nedashkovskaya et al. methionotrophica Asano and Kawamoto 1988 2006f, 2040VP – Basonym: Gaetbulimicrobium brevivitae J.H. Chitinophaga arvensicola (Oyaizu et al. 1983) Kämpfer et al. Yoon et al. 2006a 2006k, 2226VP – Basonym: Cytophaga arvensicola Oyaizu et al. Aquimarina latercula (Lewin 1969) Nedashkovskaya et al. 2006f, 1983 2040VP – Basonym: Cytophaga latercula Lewin 1969 (Approved Chitinophaga filiformis (Reichenbach 1989) Kämpfer et al. Lists 1980) 2006k, 2225VP – Basonym: Flexibacter filiformis (ex Solntseva Avibacterium avium (Hinz and Kunjara 1977) Blackall et al. 1940) Reichenbach 1989 2005, 360VP – Basonym: Hemophilus avium Hinz and Kunjara Chitinophaga japonensis (Fujita et al. 1997) Kämpfer et al. 2006k, 1977 (Approved Lists 1980) 2225VP – Basonym: Flexibacter japonensis Fujita et al. 1997 Avibacterium gallinarum (Hall et al. 1955) Blackall et al. 2005, Chitinophaga sancti (Lewin 1969) Kämpfer et al. 2006k, 2225VP – 359VP – Basonym: Pasteurella gallinarum Hall et al. 1955 Basonym: Flexibacter sancti Lewin 1969 (Approved Lists 1980) (Approved Lists 1980) Chromohalobacter beijerinckii (Hof 1935) Peçonek et al. 2006, Avibacterium paragallinarum (Biberstein and White 1969) Black- 1956VP – Basonym: Pseudomonas beijerinckii Hof 1935 all et al. 2005, 360VP – Basonym: Hemophilus paragallinarum (Approved Lists 1980) Biberstein and White 1969 (Approved Lists 1980) Conchiformibius steedae corrig. (Kuhn and Gregory 1979) Xie Avibacterium volantium (Mutters et al. 1985) Blackall et al. 2005, and Yokota 2005, 1395VP – Basonym: Simonsiella steedae Kuhn 360VP – Basonym: Pasteurella volantium Mutters et al. 1985 and Gregory 1979 (Approved Lists 1980) – Valid publica- Azohydromonas lata (Palleroni and Palleroni 1978) Xie and tion: Validation List no. 104 – Effective publication: Xie and Yokota 2005f, 2423VP – Basonym: Alcaligenes latus Palleroni Yokota (2005a) and Palleroni 1978 (Approved Lists 1980) Corallococcus coralloides (Thaxter 1892) Reichenbach 2007, 893VP Bergeriella denitrificans (Berger 1962) Xie and Yokota 2005, 1395VP – Basonym: Myxococcus coralloides Thaxter 1892 (Approved – Basonym: Neisseria denitrificans Berger 1962 (Approved Lists Lists 1980) – Valid publication: Validation List no. 115 – 1980) – Valid publication: Validation List no. 104 – Effective Effective publication: Reichenbach (2005b) publication: Xie and Yokota (2005a) Cupriavidus basilensis (Steinle et al. 1999) Vandamme and Coe- VP Bibersteinia trehalosi (Sneath and Stevens 1990) Blackall et al. 2007, nye 2004, 2287 – Basonym: Ralstonia basilensis Steinle et al. 673VP – Basonym: Pasteurella trehalosi Sneath and Stevens 1990 1999 Bifidobacterium animalis subsp. lactis (Meile et al. 1997) Masco Cupriavidus campinensis (Goris et al. 2001) Vandamme and Coe- VP et al. 2004, 1142VP – Basonym: Bifidobacterium lactis Meile et al. 1997 nye 2004, 2287 – Basonym: Ralstonia campinensis Goris et al. 2001 Blastopirellula marina (Schlesner 1987) Schlesner et al. 2004, 1578VP – Basonym: Pirellula marina (Schlesner 1987) Schle- Cupriavidus gilardii (Coenye et al. 1999) Vandamme and Coenye VP sner and Hirsch 1987 2004, 2287 – Basonym: Ralstonia gilardii Coenye et al. 1999 1356 APPENDIX 1

Cupriavidus metallidurans (Goris et al. 2001) Vandamme and Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, 465VP Coenye 2004, 2287VP – Basonym: Ralstonia metallidurans Goris – Basonym: Trichlorobacter thiogenes De Wever et al. 2001 et al. 2001 Giesbergeria anulus (Williams and Rittenberg 1957) Grabovich Cupriavidus oxalaticus (Sahin et al. 2000) Vandamme and Coe- et al. 2006, 575VP – Basonym: Aquaspirillum anulus (Williams and nye 2004, 2287VP – Basonym: Ralstonia oxalatica (ex Khambata Rittenberg 1957) Hylemon et al. 1973 (Approved Lists 1980) and Bhat 1953) Sahin et al. 2000 Giesbergeria giesbergeri (Williams and Rittenberg 1957) Grabovich Cupriavidus pauculus (Vandamme et al. 1999) Vandamme and et al. 2006, 575VP – Basonym: Aquaspirillum giesbergeri (Wil- Coenye 2004, 2288VP – Basonym: Ralstonia paucula Vandamme liams and Rittenberg 1957) Hylemon et al. 1973 (Approved et al. 1999 Lists 1980) Cupriavidus respiraculi (Coenye et al. 2003) Vandamme and Giesbergeria sinuosa (Williams and Rittenberg 1957) Grabovich Coenye 2004, 2288VP – Basonym: Ralstonia respiraculi Coenye et al. 2006, 575VP – Basonym: Aquaspirillum sinuosum (Williams and et al. 2003 Rittenberg 1957) Hylemon et al. 1973 (Approved Lists 1980) Cupriavidus taiwanensis (Chen et al. 2001) Vandamme and Goodfellowia coeruleoviolacea (Preobrazhenskaya and Sveshnikova Coenye 2004, 2288VP – Basonym: Ralstonia taiwanensis Chen 1974) Labeda and Kroppenstedt 2006, 1206VP – Basonym: Actino- et al. 2001 madura coeruleoviolacea Preobrazhenskaya and Terekhova 1987 Curvibacter delicatus (Leifson 1962) Ding and Yokota 2004, The name Goodfellowia coeruleoviolacea (Preobrazhenskaya 2229VP – Basonym: Aquaspirillum delicatum (Leifson 1962) and Sveshnikova 1974) Labeda and Kroppenstedt 2006 is ille- Hylemon et al. 1973 (Approved Lists 1980) gitimate because the genus name is illegitimate (see above VP Curvibacter lanceolatus (Leifson 1962) Ding and Yokota 2004, Goodfellowia Labeda and Kroppenstedt 2006, 1205 ). 2228VP – Basonym: Pseudomonas lanceolata Leifson 1962 Haematobacter massiliensis (Greub and Raoult 2006) Helsel (Approved Lists 1980) et al. 2007, 1371VP – Basonym: Rhodobacter massiliensis Greub Desulfarculus baarsii (Widdel 1981) Kuever et al. 2006, 2VP – and Raoult 2006 – Valid publication: Validation List no. 116 Basonym: Desulfovibrio baarsii Widdel 1981 – Valid publica- – Effective publication: Helsel et al. (2007) tion: Validation List no. 107 – Effective publication: Kuever Herbaspirillum autotrophicum (Aragno and Schlegel 1978) Ding et al. (2005q) and Yokota 2004, 2228VP – Basonym: Aquaspirillum autotrophi- Desulfofaba hansenii (Finster et al. 2001) Abildgaard et al. 2004, cum Aragno and Schlegel 1978 (Approved Lists 1980) 398VP – Basonym: Desulfomusa hansenii Finster et al. 2001 Herbaspirillum huttiense (Leifson 1962) Ding and Yokota 2004, VP Desulfosarcina cetonica corrig. (Galushko and Rozanova 1994) 2228 – Basonym: Pseudomonas huttiensis Leifson 1962 Kuever et al. 2006, 2VP – Basonym: Desulfobacterium cetonicum (Approved Lists 1980) Galushko and Rozanova 1994 – Valid publication: Validation Hylemonella gracilis (Canale-Parola et al. 1966) Spring et al. List no. 107 – Effective publication: Kuever et al. (2005m) 2004, 104VP – Basonym: Aquaspirillum gracile (Canale-Parola Desulfovibrio oxamicus (Postgate and Campbell 1966) López-Cor- et al. 1966) Hylemon et al. 1973 (Approved Lists 1980) tés et al. 2006a, 1498VP – Basonym: Desulfovibrio vulgaris subsp. Ignatzschineria larvae (Tóth et al. 2001) Tóth et al. 2007, 180VP – oxamicus Postgate and Campbell 1966 (Approved Lists 1980) Illegitimate basonym: Schineria larvae Tóth et al. 2001 Dickeya chrysanthemi (Burkholder et al. 1953) Samson et al. Insolitispirillum peregrinum (Pretorius 1963) J.H. Yoon et al. 2005, 1423VP – Basonym: Erwinia chrysanthemi Burkholder et 2007xxvi, 2834VP – Basonym: Aquaspirillum peregrinum (Preto- al. 1953 (Approved Lists 1980) rius 1963) Hylemon et al. 1973 (Approved Lists 1980) Dickeya paradisiaca (Fernandez-Borrero and Lopez-Duque Insolitispirillum peregrinum subsp. integrum (Terasaki 1973) J.H. Yoon 1970) Samson et al. 2005, 1425VP – Basonym: Erwinia paradi- et al. 2007xxvi, 2834VP – Basonym: Aquaspirillum peregrinum subsp. siaca Fernandez-Borrero and Lopez-Duque 1970 (Approved integrum (Terasaki 1973) Terasaki 1979 (Approved Lists 1980) Lists 1980) Insolitispirillum peregrinum subsp. peregrinum (Pretorius 1963) Elizabethkingia meningoseptica (King 1959) K.K. Kim et al. 2005b, J.H. Yoon et al. 2007xxvi, 2834VP – Basonym: Aquaspirillum 1291VP – Basonym: Flavobacterium meningosepticum King 1959 peregrinum subsp. peregrinum (Pretorius 1963) Hylemon et al. (Approved Lists 1980) 1973 (Approved Lists 1980) Elizabethkingia miricola (Li et al. 2004) K.K. Kim et al. 2005b, Isoptericola variabilis (Bakalidou et al. 2002) Stackebrandt et al. 1292VP – Basonym: Chryseobacterium miricola Y. Li et al. 2004 2004b, 687VP – Basonym: Cellulosimicrobium variabile Bakalidou Enterobacter cloacae subsp. dissolvens (Rosen 1922) Hoffmann et et al. 2002 al. 2005, 1396VP – Basonym: Erwinia dissolvens (Rosen 1922) Kluyvera intermedia (Izard et al. 1980) Pavan et al. 2005, 441VP – Burkholder 1948 (Approved Lists 1980) – Valid publication: Basonym: Enterobacter intermedius corrig. Izard et al. 1980 Validation List no. 104 – Effective publication: Hoffmann et Labrenzia aggregata (Uchino et al. 1999) Biebl et al. 2007, 1105VP – al. (2005a) Basonym: Stappia aggregata (ex Ahrens 1968) Uchino et al. 1999 VP Geobacillus pallidus (Scholz et al. 1988) Banat et al. 2004, 2200 Labrenzia alba (Pujalte et al. 2006) Biebl et al. 2007, 1105VP – – Basonym: Bacillus pallidus Scholz et al. 1988 Basonym: Stappia alba Pujalte et al. 2006 Geobacillus vulcani (Caccamo et al. 2000) Nazina et al. 2004, Labrenzia marina (Kim et al. 2006) Biebl et al. 2007, 1105VP – VP 2023 – Basonym: Bacillus vulcani Caccamo et al. 2000 Basonym: Stappia marina B.C. Kim et al. 2006 APPENDIX 1 1357

Laceyella putida (Lacey and Cross 1989) J.H. Yoon et al. 2005n, Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto 399VP – Basonym: Thermoactinomyces putidus Lacey and Cross and Benno 2006, 1602VP – Basonym: Bacteroides distasonis Egg- 1989 erth and Gagnon 1933 (Approved Lists 1980) Laceyella sacchari (Lacey 1971) J.H. Yoon et al. 2005n, 398VP – Parabacteroides goldsteinii (Song et al. 2006) Sakamoto and Basonym: Thermoactinomyces sacchari Lacey 1971 (Approved Benno 2006, 1602VP – Basonym: Bacteroides goldsteinii Song Lists 1980) et al. 2006 Lactobacillus kefiranofaciens subsp. kefirgranum (Takizawa et al. Parabacteroides merdae (Johnson et al. 1986) Sakamoto and 1994) Vancanneyt et al. 2004b, 555VP – Basonym: Lactobacillus Benno 2006, 1604VP – Basonym: Bacteroides merdae Johnson kefirgranum Takizawa et al. 1994 et al. 1986 Leeuwenhoekiella marinoflava (Reichenbach 1989) Nedashkovs- Parvimonas micra (Prévot 1933) Tindall and Euzéby 2006, 2712VP kaya et al. 2005m, 1035VP – Basonym: Cytophaga marinoflava – Basonym: Peptostreptococcus micros (Prévot 1933) Smith 1957 (ex Colwell et al. 1966) Reichenbach 1989 (Approved Lists 1980) Lysinibacillus fusiformis (Priest et al. 1989) Ahmed et al. 2007d, Pelomonas saccharophila (Doudoroff 1940) Xie and Yokota 2005f, 1122VP – Basonym: Bacillus fusiformis (ex Meyer and Gottheil 2424VP – Basonym: Pseudomonas saccharophila Doudoroff 1940 1901) Priest et al. 1989 (Approved Lists 1980) Lysinibacillus sphaericus (Meyer and Neide 1904) Ahmed et al. Peredibacter starrii (Seidler et al. 1972) Davidov and Jurkevitch 2007d, 1123VP – Basonym: Bacillus sphaericus Meyer and Neide 2004, 1451VP – Basonym: Bdellovibrio starrii Seidler et al. 1972 1904 (Approved Lists 1980) (Approved Lists 1980) Malikia spinosa (Leifson 1962) Spring et al. 2005b, 628VP – Phaeobacter gallaeciensis (Ruiz-Ponte et al. 1998) Martens Basonym: Pseudomonas spinosa Leifson 1962 (Approved et al. 2006, 1301VP – Basonym: Roseobacter gallaeciensis Ruiz-Ponte Lists 1980) et al. 1998 Marinovum algicola (Lafay et al. 1995) Martens et al. 2006, 1302VP Photobacterium indicum (Johnson and Weisrock 1969) Ivanova et – Basonym: Roseobacter algicola Lafay et al. 1995 al. 2004d, 1785VP – Basonym: Hyphomicrobium indicum John- Mycoplasma coccoides (Schilling 1928) Neimark et al. 2005, 1389VP son and Weisrock 1969 – Basonym: Eperythrozoon coccoides Schilling 1928 (Approved Photobacterium indicum (Johnson and Weisrock 1969) Xie and Lists 1980) Yokota 2004, 2115VP – Basonym: Hyphomicrobium indicum According to Rule 28b(2), the new combination Mycoplasma Johnson and Weisrock 1969 (Approved Lists 1980) coccoides (Schilling 1928) Neimark et al. 2005 is not validly According to Rule 24b(2), Photobacterium indicum (Johnson published (see the Request for an Opinion by Neimark et and Weisrock 1969) Ivanova et al. 2004d has priority. al., 2005). Planomicrobium alkanoclasticum (Engelhardt et al. 2001) Dai Mycoplasma ovis (Neitz et al. 1934) Neimark et al. 2004, 369VP – Baso- et al. 2005, 702VP – Basonym: Planococcus alkanoclasticus nym: Eperythrozoon ovis Neitz et al. 1934 (Approved Lists 1980) Engelhardt et al. 2001 Nakamurella multipartita (Yoshimi et al. 1996) Tao et al. 2004, Planomicrobium psychrophilum (Reddy et al. 2002) Dai et al. 999VP – Illegitimate basonym: Microsphaera multipartita Yoshimi 2005, 702VP – Basonym: Planococcus psychrophilus Reddy et et al. 1996 al. 2002 Novispirillum itersonii (Giesberger 1936) J.H. Yoon et al. 2007xxvi, Pseudomonas chlororaphis subsp. aurantiaca (Nakhimovskaya 2833VP – Basonym: Aquaspirillum itersonii (Giesberger 1936) 1948) Peix et al. 2007, 1289VP – Basonym: Pseudomonas auran- Hylemon et al. 1973 (Approved Lists 1980) tiaca Nakhimovskaya 1948 (Approved Lists 1980) Novispirillum itersonii subsp. itersonii (Giesberger 1936) J.H. Yoon Pseudomonas chlororaphis subsp. aureofaciens (Kluyver 1956) et al. 2007xxvi, 2833VP – Basonym: Aquaspirillum itersonii subsp. iter- Peix et al. 2007, 1289VP – Basonym: Pseudomonas aureofaciens sonii (Giesberger 1936) Hylemon et al. 1973 (Approved Lists 1980) Kluyver 1956 (Approved Lists 1980) Novispirillum itersonii subsp. nipponicum (Terasaki 1973) J.H. Pullulanibacillus naganoensis (Tomimura et al. 1990) Hatayama Yoon et al. 2007xxvi, 2834VP – Basonym: Aquaspirillum itersonii et al. 2006, 2550VP – Basonym: Bacillus naganoensis Tomimura subsp. nipponicum (Terasaki 1973) Terasaki 1979 (Approved et al. 1990 Lists 1980) Quatrionicoccus australiensis (Maszenan et al. 2002) Tindall and Novosphingobium resinovorum (Delaporte and Daste 1956) Y.W. Euzéby 2006, 2712VP – Illegitimate basonym: Quadricoccus aus- Lim et al. 2007, 1907VP – Basonym: Flavobacterium resinovorum traliensis Maszenan et al. 2002 Delaporte and Daste 1956 (Approved Lists 1980) Ralstonia syzygii (Roberts et al. 1990) Vaneechoutte et al. 2004, Oceanobacillus picturae (Heyrman et al. 2003) J.S. Lee et al. 2006b, 321VP – Basonym: Pseudomonas syzygii Roberts et al. 1990 VP 256 – Basonym: Virgibacillus picturae Heyrman et al. 2003 Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Paenibacillus chitinolyticus (Kuroshima et al. 1996) J.S. Lee Nedashkovskaya et al. 2005l, 2587VP – Illegitimate basonym: et al. 2004, 932VP – Basonym: Bacillus chitinolyticus Kuroshima Reichenbachia agariperforans Nedashkovskaya et al. 2003 et al. 1996 Rhizobium larrymoorei (Bouzar and Jones 2001) J.M. Young 2004, Paenibacillus ehimensis (Kuroshima et al. 1996) J.S. Lee et al. 2004, 149VP – Basonym: Agrobacterium larrymoorei Bouzar and Jones 931VP – Basonym: Bacillus ehimensis Kuroshima et al. 1996 2001 1358 APPENDIX 1

Rhodococcus corynebacterioides (Serrano et al. 1972) Yassin and seva 1936) Brockman 1989 – Valid publication: Validation Schaal 2005, 1347VP – Basonym: Nocardia corynebacterioides Ser- List no. 115 – Effective publication: Reichenbach (2005i) rano et al. 1972 (Approved Lists 1980) Sphaerisporangium viridialbum corrig. (Nonomura and Ohara 1960) Roseivirga seohaensis (Yoon et al. 2005) S.C. Lau et al. 2006b, Ara and Kudo 2007, 2449VP – Basonym: Streptosporangium viridial- 1064VP – Basonym: Marinicola seohaensis J.H. Yoon et al. 2005c bum Nonomura and Ohara 1960 – Valid publication: Validation Ruegeria lacuscaerulensis (Petursdottir and Kristjansson 1999) Yi List no. 118 – Effective publication: Ara and Kudo (2007b) et al. 2007, 818VP – Basonym: Silicibacter lacuscaerulensis Peturs- Sphingobium chungbukense (Kim et al. 2000) Pal et al. 2005, 1971VP dottir and Kristjansson 1999 – Basonym: Sphingomonas chungbukensis Kim et al. 2000 Ruegeria pomeroyi (González et al. 2003) Yi et al. 2007, 818VP – Sphingobium cloacae (Fujii et al. 2001) Prakash and Lal 2006, Basonym: Silicibacter pomeroyi González et al. 2003 2151VP – Basonym: Sphingomonas cloacae Fujii et al. 2001 Salimicrobium album (Hao et al. 1985) J.H. Yoon et al. 2007xxi, Sphingobium xenophagum (Stolz et al. 2000) Pal et al. 2006, 669VP 2409VP – Basonym: Marinococcus albus Hao et al. 1985 – Basonym: Sphingomonas xenophaga Stolz et al. 2000 Salimicrobium halophilum (Ventosa et al. 1990) J.H. Yoon et al. 2007xxi, Sphingopyxis taejonensis (Lee et al. 2001) Pal et al. 2006, 670VP – 2409VP – Basonym: Bacillus halophilus Ventosa et al. 1990 Basonym: Sphingomonas taejonensis Lee et al. 2001 Salmonella enterica subsp. arizonae (Borman 1957) Le Minor and Sporolactobacillus laevolacticus (Andersch et al. 1994) Hatayama et Popoff 1987, 519VP – Basonym: Salmonella arizonae (Borman al. 2006, 2550VP – Basonym: Bacillus laevolacticus (ex Nakayama 1957) Kauffmann 1964 (Approved Lists 1980) – Reference: and Yanoshi 1967) Andersch et al. 1994 Judicial Commission of the International Committee on Sys- Stanierella latercula (Lewin 1969) Nedashkovskaya et al. 2005h, tematics of Prokaryotes 2005b (Opinion 80) 228VP – Basonym: Cytophaga latercula Lewin 1969 (Approved Lists Salmonella enterica subsp. bongori (Le Minor et al. 1985) Le 1980) VP Minor and Popoff 1987, 519 – Basonym: Salmonella choler- Sulfitobacter guttiformis (Labrenz et al. 2000) J.H. Yoon et al. 2007x, aesuis subsp. bongori corrig. Le Minor et al. 1985 – Reference: 1791VP – Basonym: Staleya guttiformis Labrenz et al. 2000 Judicial Commission of the International Committee on Sys- tematics of Prokaryotes 2005b (Opinion 80) Sulfurimonas denitrificans (Timmer-ten Hoor 1975) Takai et al. 2006b, 1732VP – Basonym: Thiomicrospira denitrificans Timmer- Salmonella enterica subsp. diarizonae (Le Minor et al. 1985) Le ten Hoor 1975 (Approved Lists 1980) Minor and Popoff 1987, 519VP – Basonym: Salmonella cholerae- suis subsp. diarizonae corrig. Le Minor et al. 1985 – Reference: Syntrophomonas bryantii (Stieb and Schink 1985) C. Wu et al. Judicial Commission of the International Committee on Sys- 2006, 2335 – Basonym: Clostridium bryantii Stieb and Schink tematics of Prokaryotes 2005b (Opinion 80) 1985 Salmonella enterica subsp. houtenae (Le Minor et al. 1985) Le According to Rule 27(3), Syntrophomonas bryantii (Stieb Minor and Popoff 1987, 519VP – Basonym: Salmonella cholerae- and Schink 1985) C. Wu et al. 2006 is not validly published suis subsp. houtenae corrig. Le Minor et al. 1985 – Reference: because the type strain is not deposited in two different col- Judicial Commission of the International Committee on Sys- lections in two different countries. tematics of Prokaryotes 2005b (Opinion 80) Terrimonas ferruginea (Sickles and Shaw 1934) Xie and Yokota VP Salmonella enterica subsp. indica (Le Minor et al. 1987) Le Minor 2006c, 1120 – Basonym: Flavobacterium ferrugineum Sickles and Popoff 1987, 519VP – Basonym: Salmonella choleraesuis and Shaw 1934 (Approved Lists 1980) subsp. indica Le Minor et al. 1987 – Reference: Judicial Com- Tetragenococcus solitarius (Collins et al. 1989) Ennahar and Cai 2005, mission of the International Committee on Systematics of 592VP – Basonym: Enterococcus solitarius Collins et al. 1989 Prokaryotes 2005b (Opinion 80) Tetrasphaera duodecadis (Lochhead 1958) Ishikawa and Yokota Salmonella enterica subsp. salamae (Le Minor et al. 1985) Le 2006, 1371VP – Basonym: Arthrobacter duodecadis Lochhead Minor and Popoff 1987, 519VP – Basonym: Salmonella cholerae- 1958 (Approved Lists 1980) suis subsp. salamae corrig. Le Minor et al. 1985 – Reference: Thalassobius gelatinovorus (Rüger and Höfle 1992) Arahal et al. Judicial Commission of the International Committee on Sys- 2006, 3VP – Basonym: Agrobacterium gelatinovorum (ex Ahrens tematics of Prokaryotes 2005b (Opinion 80) 1968) Rüger and Höfle 1992 – Valid publication: Validation Seinonella peptonophila (Nonomura and Ohara 1971) J.H. Yoon List no. 107 – Effective publication: Arahal et al. (2006) VP et al. 2005n, 400 – Basonym: Thermoactinomyces peptonophilus Thermoflavimicrobium dichotomicum (Krasil’nikov and Agre 1964) Nonomura and Ohara 1971 (Approved Lists 1980) J.H. Yoon et al. 2005n, 399VP – Basonym: Thermoactinomyces Simplicispira metamorpha (Terasaki 1961) Grabovich et al. 2006, dichotomicus corrig. (Krasil’nikov and Agre 1964) Cross and 575VP – Basonym: Aquaspirillum metamorphum (Terasaki 1961) Goodfellow 1973 (Approved Lists 1980) Hylemon et al. 1973 (Approved Lists 1980) Thermopolyspora flexuosa (Meyer 1989) Goodfellow et al. 2005, Simplicispira psychrophila (Terasaki 1973) Grabovich et al. 2006, 1982VP – Basonym: Actinomadura flexuosa (ex Krasil’nikov and 575VP – Basonym: Aquaspirillum psychrophilum (Terasaki 1973) Agre 1964) Meyer 1989 Terasaki 1979 (Approved Lists 1980) Thiomonas delicata (Katayama-Fujimura et al. 1984) Kelly and Sorangium cellulosum (Brockman 1989) Reichenbach 2007, 894VP Wood 2006, 926VP – Basonym: Thiobacillus delicatus (ex Mizoguchi – Basonym: Polyangium cellulosum (ex Imshenetski and Solnt- et al. 1976) Katayama-Fujimura et al. 1984 – Valid publication: Val- APPENDIX 1 1359

idation List no. 109 – Effective publication: Kelly and Wood Flammeovirga arenaria (ex Lewin 1969) M. Takahashi et al. 2006, (2005b) 2099VP, nom. rev., comb. nov. – Synonym: “Microscilla arenaria” Turneriella parva (Hovind-Hougen et al. 1982) Levett et al. 2005, Lewin 1969 1499VP – Basonym: Leptospira parva Hovind-Hougen et al. 1982 Gluconobacter albidus (ex Kondo and Ameyama 1958) Yukphan VP Umezawaea tangerina (Kinoshita et al. 2000) Labeda and Krop- et al. 2005, 983 , nom. rev., comb. nov. – Synonym: “Acetobacter penstedt 2007, 2761VP – Basonym: Saccharothrix tangerinus albidus” Kondo and Ameyama 1958 – Valid publication: Valida- Kinoshita et al. 2000 tion List no. 103 – Effective publication: Yukphan et al. (2004b) VP Virgibacillus halodenitrificans (Denariaz et al. 1989) J.H. Yoon Jahnella thaxteri corrig. (ex Jahn 1924) Reichenbach 2007, 894 , et al. 2004k, 2166VP – Basonym: Bacillus halodenitrificans Den- nom. rev., comb. nov. – Synonym: “Archangium thaxteri” Jahn ariaz et al. 1989 1924 – Valid publication: Validation List no. 115 – Effective publication: Reichenbach (2005h) Viridibacillus arenosi (Heyrman et al. 2005) Albert et al. 2007, VP 2735VP – Basonym: Bacillus arenosi Heyrman et al. 2005b Kofleria flava (ex Kofler 1913) Reichenbach 2007, 894 , nom. rev., comb. nov. – Synonyms: “Polyangium flavum” Kofler Viridibacillus arvi (Heyrman et al. 2005) Albert et al. 2007, 1913, “Archangium flavum” (Kofler 1913) Jahn 1924 – Valid 2735VP – Basonym: Bacillus arvi Heyrman et al. 2005b publication: Validation List no. 115 – Effective publication: Viridibacillus neidei (Nakamura et al. 2002) Albert et al. 2007, Reichenbach (2005m) 2735VP – Basonym: Bacillus neidei Nakamura et al. 2002 Mycobacterium salmoniphilum (ex Ross 1960) Whipps et al. 2007, Wautersia basilensis (Steinle et al. 1999) Vaneechoutte et al. 2004, 2529VP, sp. nov., nom. rev. – Synonym: “Mycobacterium salmo- 323VP – Basonym: Ralstonia basilensis Steinle et al. 1999 niphilum” Ross 1960 Wautersia campinensis (Goris et al. 2001) Vaneechoutte et al. 2004, Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor 323VP – Basonym: Ralstonia campinensis Goris et al. 2001 and Popoff 1987, 519VP, sp. nov., nom. rev. – Synonym: “Sal- Wautersia eutropha (Davis 1969) Vaneechoutte et al. 2004, 323VP – monella enterica” Kauffmann and Edwards 1952 – Reference: Basonym: Alcaligenes eutrophus Davis 1969 (Approved Lists 1980) Judicial Commission of the International Committee on Sys- Wautersia gilardii (Coenye et al. 1999) Vaneechoutte et al. 2004, tematics of Prokaryotes 2005b (Opinion 80) 324VP – Basonym: Ralstonia gilardii Coenye et al. 1999 Sorangium (ex Jahn 1924) Reichenbach 2007, 894VP, gen. nov., Wautersia metallidurans (Goris et al. 2001) Vaneechoutte et al. nom. rev.- Synonym: “Sorangium” Jahn 1924 – Valid publica- 2004, 324VP – Basonym: Ralstonia metallidurans Goris et al. 2001 tion: Validation List no. 115 – Effective publication: Reichen- bach (2005i) Wautersia oxalatica (Sahin et al. 2000) Vaneechoutte et al. 2004, 324VP – Basonym: Ralstonia oxalatica (ex Khambata and Bhat Thermopolyspora (ex Krasil’nikov and Agre 1964) Goodfellow VP 1953) Sahin et al. 2000 et al. 2005, 1980 , gen. nov., nom. rev. – Synonym: “Ther- mopolyspora” Krassilnikov and Agre 1964 Wautersia paucula (Vandamme et al. 1999) Vaneechoutte et al. 2004, 325VP – Basonym: Ralstonia paucula Vandamme Xanthomonas alfalfae (ex Riker et al. 1935) Schaad et al. 2007, VP et al. 1999 894 , sp. nov., nom. rev. – Synonym: “Xanthomonas alfalfae” (ex Riker et al. 1935) Dowson 1943 – Valid publication: Wautersia respiraculi (Coenye et al. 2003) Vaneechoutte et al. 2004, Validation List no. 115 – Effective publication: Schaad et VP 325 – Basonym: Ralstonia respiraculi Coenye et al. 2003 al. (2006) Wautersia taiwanensis (Chen et al. 2001) Vaneechoutte et al. Xanthomonas citri subsp. malvacearum (ex Smith 1901) Schaad et VP 2004, 325 – Basonym: Ralstonia taiwanensis Chen et al. 2001 al. 2007, 895VP, subsp. nov., nom. rev. – Synonym: “Xanthomo- Xylanimicrobium pachnodae (Cazemier et al. 2004) Stackebrandt nas malvacearum” (Smith 1901) Dowson 1939 – Valid publica- and Schumann 2004, 1385VP – Basonym: Promicromonospora tion: Validation List no. 115 – Effective publication: Schaad pachnodae Cazemier et al. 2004 et al. (2006) Revived names Xanthomonas gardneri (ex Sutic 1957) Jones et al. 2006, 926VP, nom. rev., comb. nov. – Synonym: “Pseudomonas gardneri” Sutic VP Byssovorax cruenta (ex Thaxter 1897) Reichenbach 2006, 2363 , 1957 – Valid publication: Validation List no. 109 – Effective sp. nov., nom. rev. – Synonym: “Myxococcus cruentus” Thaxter publication: J.B. Jones et al. (2004) 1897 Corallococcus exiguus (ex Kofler 1913) Reichenbach 2007, 893VP, Conserved specific epithet nom. rev., comb. nov. – Synonym: “Myxococcus exiguus” Kofler enterica in Salmonella enterica (ex Kauffmann and Edwards 1952) 1913 – Valid publication: Validation List no. 115 – Effective Le Minor and Popoff 1987 – Reference: Judicial Commission publication: Reichenbach (2005b) of the International Committee on Systematics of Prokary- Cystobacter violaceus (ex Kühlwein and Gallwitz 1958) Reichen- otes 2005b (Opinion 80) VP bach 2007, 894 , nom. rev., comb. nov. – Synonyms: “Poly- Rejected names angium violaceum” Kühlwein and Gallwitz 1958, “Archangium violaceum” Kühlwein and reichenbach 1964 – Valid publi- Pelczaria Poston 1994 – Reference: Judicial Commission of cation: Validation List no. 115 – Effective publication: the International Committee on Systematics of Prokaryotes Reichenbach (2005d) 2005a (Opinion 78) 1360 APPENDIX 1

Pelczaria aurantia Poston 1994 – Reference: Judicial Commission Bacillus coagulans Hammer 1915 (Approved Lists 1980) emend. of the International Committee on Systematics of Prokary- De Clerck et al. 2004a – Publication in the IJSEM: List of otes 2005a (Opinion 78) Changes in Taxonomic Opinion no. 1 Emendations Bacillus mojavensis Roberts et al. 1994 emend. L.T. Wang et al. 2007 Acidaminococcus Rogosa 1969 emend. Jumas-Bilak et al. 2007b Bacillus simplex (ex Meyer and Gottheil 1901) Priest et al. 1989 Acidianus Segerer et al. 1986 emend. Plumb et al. 2007 emend. Heyrman et al. 2005a Acidomonas methanolica (Uhlig et al. 1986) Urakami et al. 1989 Bifidobacterium animalis (Mitsuoka 1969) Scardovi and Trovatelli emend. Yamashita et al. 2004 1974 emend. Masco et al. 2004 Acidomonas Urakami et al. 1989 emend. Yamashita et al. 2004 Blastococcus aggregatus Ahrens and Moll 1970 (Approved Lists Actinobacillus capsulatus Arseculeratne 1962 (Approved Lists 1980) emend. Urzì et al. 2004 1980) emend. Kuhnert et al. 2007 Blastococcus Ahrens and Moll 1970 (Approved Lists 1980) Actinobacillus rossii Sneath and Stevens 1990 emend. Christensen emend. S.D. Lee 2006g et al. 2005 Blastococcus Ahrens and Moll 1970 (Approved Lists 1980) Aeromicrobium Miller et al. 1991 emend. J.H. Yoon et al. 2005q emend. Urzì et al. 2004 Agromyces fucosus Zgurskaya et al. 1992 emend. Ortiz-Martinez Burkholderia pyrrocinia (Imanaka et al. 1965) Vandamme et al. et al. 2004 1997 emend. Storms et al. 2004 – Publication in the IJSEM: Alcaligenes faecalis Castellani and Chalmers 1919 (Approved List of Changes in Taxonomic Opinion no. 1 Lists 1980) emend. Rehfuss and Urban 2005a – Publication Caldicellulosiruptor Rainey et al. 1995 emend. Onyenwoke in the IJSEM: List of Changes in Taxonomic Opinion no. 3 et al. 2006 Algibacter Nedashkovskaya et al. 2004d emend. Nedashkovskaya Carboxydothermus Svetlichny et al. 1991 emend. Slobodkin et al. 2007e et al. 2006a Algoriphagus Bowman et al. 2003 emend. Nedashkovskaya Cardiobacterium valvarum Han et al. 2004 emend. Han and et al. 2004h Falsen 2005 – Publication in the IJSEM: List of Changes in Algoriphagus Bowman et al. 2003 emend. Nedashkovskaya Taxonomic Opinion no. 3 et al. 2007b Cellulosimicrobium Schumann et al. 2001 emend. J.M. Brown Alicyclobacillus acidocaldarius (Darland and Brock 1971) Wisotz- et al. 2006 key et al. 1992 emend. Goto et al. 2006 – Publication in the Cellulosimicrobium Schumann et al. 2001 emend. J.H. Yoon IJSEM: List of Changes in Taxonomic Opinion no. 5 et al. 2007xxv Alicyclobacillus Wisotzkey et al. 1992 emend. Karavaiko et al. Chitinimonas S.C. Chang et al. 2004 emend. B.Y. Kim et al. 2006d 2005 Chitinophaga arvensicola (Oyaizu et al. 1983) Kämpfer et al. Alteromonadaceae Ivanova and Mikhailov 2001 emend. Ivanova 2006k emend. Pankratov et al. 2006 et al. 2004d Chitinophaga Sangkhobol and Skerman 1981 emend. Kämpfer Alteromonas Baumann et al. 1972 (Approved Lists 1980) emend. et al. 2006k Van Trappen et al. 2004b Chloroflexi Garrity and Holt 2001 emend. Hugenholtz and Stack- Alteromonas macleodii Baumann et al. 1972 (Approved Lists 1980) ebrandt 2004 (category not covered by the Rules) emend. Yi et al. 2004 Clostridium bifermentans (Weinberg and Séguin 1918) Bergey et Amphibacillus Niimura et al. 1990 emend. S.Y. An et al. 2007e al. 1923 (Approved Lists 1980) emend. Chamkha et al. 2001 – Anaerolinea Sekiguchi et al. 2003 emend. Yamada et al. 2006 Publication in the IJSEM: List of Changes in Taxonomic Opin- ion no. 1 Aquificales Reysenbach 2002 emend. L’Haridon et al. 2006 Clostridium sardiniense Prévot 1938 (Approved Lists 1980) Aquimarina Nedashkovskaya et al. 2005h emend. Nedashkovs- emend. X. Wang et al. 2005 kaya et al. 2006f Corynebacterium aurimucosum Yassin et al. 2002 emend. Danesh- Arcanobacterium Collins et al. 1983 emend. Lehnen et al. 2006 var et al. 2004 – Publication in the IJSEM: List of Changes in Arenibacter Ivanova et al. 2001 emend. Nedashkovskaya et al. 2006g Taxonomic Opinion no. 1 Arenibacter latericius Ivanova et al. 2001 emend. Nedashkovskaya Cupriavidus Makkar and Casida 1987 emend. Vandamme and et al. 2006g Coenye 2004 Arthrobacter cumminsii Funke et al. 1997 emend. Funke et al. Cyclobacterium Raj and Maloy 1990 emend. Ying et al. 2006 1998 – Publication in the IJSEM: List of Changes in Taxo- Desulfatibacillum Cravo-Laureau et al. 2004a emend. Cravo-Lau- nomic Opinion no. 1 reau et al. 2004b Aureispira Hosoya et al. 2006 emend. Hosoya et al. 2007 Desulfitobacterium hafniense Christiansen and Ahring 1996 Azospira Reinhold-Hurek and Hurek 2000 emend. H.S. Bae emend. Niggemyer et al. 2001 – Publication in the IJSEM: et al. 2007 List of Changes in Taxonomic Opinion no. 2 APPENDIX 1 1361

Desulfofaba Knoblauch et al. 1999 emend. Abildgaard et al. Halomonadaceae Franzmann et al. 1989 emend. Ntougias 2004 et al. 2007b Desulfurobacterium L’Haridon et al. 1998 emend. L’Haridon Halovibrio Fendrich 1989 emend. Sorokin et al. 2006a et al. 2006 Hongiella Yi and Chun 2004 emend. Nedashkovskaya et al. Desulfurobacterium L’Haridon et al. 1998 emend. Alain et al. 2004h 2003 – Publication in the IJSEM: List of Changes in Taxo- Hymenobacter Hirsch et al. 1999 emend. Buczolits et al. 2006 nomic Opinion no. 2 Idiomarinaceae Ivanova et al. 2004d emend. Jean et al. 2006b Desulfurococcus Zillig and Stetter 1983 emend. Perevalova Labrys monachus corrig. Vasilyeva and Semenov 1985 emend. et al. 2005 Islam et al. 2007 Devosia Nakagawa et al. 1996 emend. Yoo et al. 2006 Labrys Vasilyeva and Semenov 1985 emend. Islam et al. 2007 Devosia Nakagawa et al. 1996 emend. J.H. Yoon et al. 2007xvii Lactobacillus fermentum Beijerinck 1901 (Approved Lists 1980) Dialister (ex Bergey et al. 1923) Moore and Moore 1994 emend. emend. Dellaglio et al. 2004 Jumas-Bilak et al. 2005 Lactobacillus kefiranofaciens Fujisawa et al. 1988 emend. Vancan- Dialister pneumosintes (Olitsky and Gates 1921) Moore and neyt et al. 2004b Moore 1994 emend. Jumas-Bilak et al. 2005 Lactobacillus salivarius Rogosa et al. 1953 (Approved Lists 1980) Dyadobacter Chelius and Triplett 2000 emend. Reddy and Garcia- emend. Y. Li et al. 2006 Pichel 2005 Y. Li et al. 2006 propose that the infraspecific division of Lactobacil- Enterobacter asburiae Brenner et al. 1988 emend. Hoffmann lus salivarius Rogosa et al. 1953 (Approved Lists 1980) into the sub- et al. 2005a – Publication in the IJSEM: List of Changes in species Lactobacillus salivarius subsp. salicinius Rogosa et al. 1953 Taxonomic Opinion no. 2 (Approved Lists 1980) and Lactobacillus salivarius subsp. salivarius Enterobacter kobei Kosako et al. 1997 emend. Hoffmann et al. Rogosa et al. 1953 (Approved Lists 1980) be discontinued. 2005a – Publication in the IJSEM: List of Changes in Taxo- Lactobacillus vaccinostercus Kozaki and Okada 1983 emend. Del- nomic Opinion no. 2 laglio et al. 2006 Flammeovirga aprica (Reichenbach 1989) Nakagawa et al. 1997 Lampropedia hyalina (Ehrenberg 1832) Schroeter 1886 emend. M. Takahashi et al. 2006 (Approved Lists 1980) emend. N. Lee et al. 2004 Flammeovirga Nakagawa et al. 1997 emend. M. Takahashi Lampropedia hyalina (Ehrenberg 1832) Schroeter 1886 (Approved et al. 2006 Lists 1980) emend. Xie and Yokota 2003 – Publication in the Flexithrix dorotheae Lewin 1970 (Approved Lists 1980) emend. IJSEM: List of Changes in Taxonomic Opinion no. 2 Hosoya and Yokota 2007a Lampropedia Schroeter 1886 (Approved Lists 1980) emend. N. Flexithrix Lewin 1970 (Approved Lists 1980) emend. Hosoya Lee et al. 2004 and Yokota 2007a Leisingera Schaefer et al. 2002 emend. Martens et al. 2006 Formosa algae Ivanova et al. 2004a emend. Nedashkovskaya Lentibacillus Yoon et al. 2002 emend. Jeon et al. 2005a et al. 2006d Leptospiraceae Hovind-Hougen 1979 (Approved Lists 1980) Formosa Ivanova et al. 2004a emend. Nedashkovskaya et al. emend. Levett et al. 2005 2006d Leucobacter chromiireducens Morais et al. 2005 emend. Muir and Georgenia Altenburger et al. 2002 emend. W.J. Li et al. 2007 Tan 2007 Glaciecola Bowman et al. 1998 emend. Van Trappen et al. 2004c Lewinella cohaerens (Lewin 1970) Sly et al. 1998 emend. Khan Gluconacetobacter hansenii corrig. (Gosselé et al. 1983) Yamada et al. 2007a et al. 1998 Lewinella nigricans (Lewin 1970) Sly et al. 1998 emend. Khan Glycomyces Labeda et al. 1985 emend. Labeda and Kroppenstedt et al. 2007a 2004 Lewinella persica (Lewin 1970) Sly et al. 1998 emend. Khan Glycomycetaceae Rainey et al. 1997 (complete authorship reads et al. 2007a Rainey, Ward-Rainey and Stackebrandt) emend. Labeda and Lewinella Sly et al. 1998 emend. Khan et al. 2007a Kroppenstedt 2005 Marinibacillus Yoon et al. 2001 emend. J.H. Yoon et al. 2004g Hahella Lee et al. 2001 emend. Baik et al. 2005 Massilia timonae La Scola et al. 2000 emend. Lindquist et al. Halobacillus Spring et al. 1996 emend. J.H. Yoon et al. 2007vi 2003 – Publication in the IJSEM: List of Changes in Taxo- Halobacterium salinarum corrig. (Harrison and Kennedy 1922) nomic Opinion no. 1 Elazari-Volcani 1957 (Approved Lists 1980) emend. Gruber Mesonia Nedashkovskaya et al. 2003 emend. Nedashkovskaya et al. 2004 – Publication in the IJSEM: List of Changes in et al. 2006e Taxonomic Opinion no. 2 Methanoculleus thermophilus corrig. (Rivard and Smith 1982) Halochromatium Imhoff et al. 1998 emend. Anil Kumar et al. 2007c Maestrojuán et al. 1990 emend. Spring et al. 2005a Halomonadaceae Franzmann et al. 1989 emend. Ben Ali Gam Methanogenium Romesser et al. 1981 emend. Spring et al. et al. 2007 2005a 1362 APPENDIX 1

Methanogenium thermophilicum Rivard and Smith 1982 emend. Pasteurella mairii corrig. Sneath and Stevens 1990 emend. Chris- Zabel et al. 1985 – Publication in the IJSEM: List of Changes tensen et al. 2005 in Taxonomic Opinion no. 1 Pasteuria nishizawae Sayre et al. 1992 emend. Noel et al. 2005 Methanosarcina baltica von Klein et al. 2002 emend. Singh Pectinatus Lee et al. 1978 (Approved Lists 1980) emend. Juvonen et al. 2005 and Suihko 2006 Methylibium Nakatsu et al. 2006 emend. M.H. Yoon et al. 2007c Pedobacter Steyn et al. 1998 emend. Gallego et al. 2006c Methylocella Dedysh et al. 2000 emend. Dedysh et al. 2004 Pedobacter Steyn et al. 1998 emend. Hwang et al. 2006 Methylocystis (ex Whittenbury et al. 1970) Bowman et al. 1993 Pedobacter Steyn et al. 1998 emend. Vanparys et al. 2005a emend. Dedysh et al. 2007 Pelotomaculum Imachi et al. 2002 emend. de Bok et al. 2005 Methylosarcina Wise et al. 2001 emend. Kalyuzhnaya et al. 2005 Pelotomaculum Imachi et al. 2002 emend. Y.L. Qiu et al. 2006 – Publi- Methylovorus glucosotrophus Govorukhina and Trotsenko 1991 cation in the IJSEM: List of Changes in Taxonomic Opinion no. 5 emend. Doronina et al. 2005 Phaeobacter Martens et al. 2006 emend. J.H. Yoon et al. 2007xi Methylovorus Govorukhina and Trotsenko 1991 emend. Doron- Phenylobacterium Lingens et al. 1985 emend. Kanso and Patel ina et al. 2005 2004 Methylovorus mays Doronina et al. 2001 emend. Doronina Phenylobacterium Lingens et al. 1985 emend. Tiago et al. 2005a et al. 2005 – Publication in the IJSEM: List of Changes in Taxonomic Microcella Tiago et al. 2005b emend. Tiago et al. 2006b Opinion no. 3 Mobiluncus curtisii Spiegel and Roberts 1984 emend. Hoyles Photorhabdus asymbiotica Fischer-Le Saux et al. 1999 emend. et al. 2004 – Publication in the IJSEM: List of Changes in Akhurst et al. 2004 Taxonomic Opinion no. 1 Phyllobacterium (ex Knösel 1962) Knösel 1984 emend. Jurado Mobiluncus mulieris Spiegel and Roberts 1984 emend. Hoyles et al. 2005d et al. 2004 – Publication in the IJSEM: List of Changes in Phyllobacterium (ex Knösel 1962) Knösel 1984 emend. Mantelin Taxonomic Opinion no. 1 et al. 2006 Mobiluncus Spiegel and Roberts 1984 emend. Hoyles et al. 2004 Pigmentiphaga Blümel et al. 2001 emend. J.H. Yoon et al. 2007iv – Publication in the IJSEM: List of Changes in Taxonomic Opinion no. 1 Pirellula Schlesner and Hirsch 1987 emend. Schlesner et al. 2004 Modestobacter Mevs et al. 2000 emend. Reddy et al. 2007 Planococcus maritimus Yoon et al. 2003 emend. Ivanova et al. Modestobacter multiseptatus Mevs et al. 2000 emend. Reddy 2006b – Publication in the IJSEM: List of Changes in Taxo- et al. 2007 nomic Opinion no. 6 Muricauda Bruns et al. 2001 emend. J.H. Yoon et al. 2005v Planotetraspora Runmao et al. 1993 emend. Tamura and Sakane Natronorubrum Xu et al. 1999 emend. Cui et al. 2006a 2004 Nesterenkonia Stackebrandt et al. 1995 emend. W.J. Li et al. Pontibacillus J.M. Lim et al. 2005b emend. J.M. Lim et al. 2005a 2005b Pseudomonas asplenii (Ark and Tompkins 1946) Savulescu 1947 Nocardiopsis salina W.J. Li et al. 2004d emend. W.J. Li et al. (Approved Lists 1980) emend. Tvrzová et al. 2006 2006a Pseudomonas chlororaphis (Guignard and Sauvageau 1894) Bergey Nonlabens tegetincola S.C. Lau et al. 2005c emend. S.C. Lau et al. 1930 (Approved Lists 1980) emend. Peix et al. 2007 et al. 2006b Pseudomonas citronellolis Seubert 1960 (Approved Lists 1980) Oceanimonas corrig. Brown et al. 2001 emend. Ivanova et al. emend. Lang et al. 2007a 2005d – Publication in the IJSEM: List of Changes in Taxo- Pseudomonas nitroreducens Iizuka and Komagata 1964 (Approved nomic Opinion no. 2 Lists 1980) emend. Lang et al. 2007a Oceanithermus Miroshnichenko et al. 2003 emend. Mori et al. Pseudoxanthomonas broegbernensis Finkmann et al. 2000 emend. 2004 Thierry et al. 2004 Oceanobacillus Lu et al. 2002 emend. J.S. Lee et al. 2006b Pseudoxanthomonas Finkmann et al. 2000 emend. Thierry Oceanobacillus Lu et al. 2002 emend. Yumoto et al. 2005b et al. 2004 Oceanobacillus oncorhynchi Yumoto et al. 2005b emend. Romano Ralstonia insidiosa Coenye et al. 2003 emend. Vaneechoutte et al. 2006b et al. 2004 Oenococcus Dicks et al. 1995 emend. Endo and Okada 2006 Rheinheimera Brettar et al. 2002 emend. Merchant et al. 2007 Paenibacillus larvae (White 1906) Ash et al. 1994 emend. Gen- Rhodobacter Imhoff et al. 1984 emend. Srinivas et al. 2007d ersch et al. 2006 Roseburia intestinalis Duncan et al. 2002 emend. Duncan Pannonibacter Borsodi et al. 2003 emend. Biebl et al. 2007 et al. 2006 Pasteurella aerogenes McAllister and Carter 1974 (Approved Lists Roseibium denhamense Suzuki et al. 2000 emend. Biebl et al. 1980) emend. Christensen et al. 2005 2007 APPENDIX 1 1363

Roseibium hamelinense Suzuki et al. 2000 emend. Biebl et al. Streptomyces flavovirens (Waksman 1923) Waksman and Henrici 2007 1948 (Approved Lists 1980) emend. Lanoot et al. 2005 Roseibium Suzuki et al. 2000 emend. Biebl et al. 2007 Streptomyces fradiae (Waksman and Curtis 1916) Waksman and Roseivirga Nedashkovskaya et al. 2005c emend. Nedashkovskaya Henrici 1948 (Approved Lists 1980) emend. Lanoot et al. et al. 2005k 2004 – Publication in the IJSEM: List of Changes in Taxo- nomic Opinion no. 1 Roseobacter Shiba 1991 emend. Martens et al. 2006 Streptomyces griseus (Krainsky 1914) Waksman and Henrici 1948 Rothia dentocariosa (Onishi 1949) Georg and Brown 1967 (Approved (Approved Lists 1980) emend. Z. Liu et al. 2005b Lists 1980) emend. Daneshvar et al. 2004 – Publication in the IJSEM: List of Changes in Taxonomic Opinion no. 1 Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980) emend. Lanoot et al. 2005 Rubrobacteraceae Rainey et al. 1997 (complete authorship reads Rainey, Ward-Rainey and Stackebrandt) emend. Stacke- Streptomyces minutiscleroticus (Thirumalachar 1965) Pridham brandt 2004 – Publication in the IJSEM: List of Changes in 1970 (Approved Lists 1980) emend. Lanoot et al. 2005 Taxonomic Opinion no. 2 Streptomyces phaeopurpureus Shinobu 1957 (Approved Lists 1980) Rubrobacteridae Rainey et al. 1997 (complete authorship reads emend. Lanoot et al. 2004 – Publication in the IJSEM: List of Rainey, Ward-Rainey and Stackebrandt) emend. Stacke- Changes in Taxonomic Opinion no. 1 brandt 2004 – Publication in the IJSEM: List of Changes in Streptomyces tricolor (Wollenweber 1920) Waksman 1961 (Approved Taxonomic Opinion no. 2 Lists 1980) emend. Lanoot et al. 2004 – Publication in the Ruegeria atlantica (Rüger and Höfle 1992) Uchino et al. 1999 IJSEM: List of Changes in Taxonomic Opinion no. 1 emend. Yi et al. 2007 Streptomyces vinaceus Jones 1952 (Approved Lists 1980) emend. Ruegeria atlantica (Rüger and Höfle 1992) Uchino et al. 1999 Lanoot et al. 2004 – Publication in the IJSEM: List of Changes emend. Muramatsu et al. 2007 in Taxonomic Opinion no. 1 Ruegeria Uchino et al. 1999 emend. Martens et al. 2006 Sulfitobacter Sorokin 1996 emend. J.H. Yoon et al. 2007x Ruegeria Uchino et al. 1999 emend. Yi et al. 2007 Sulfurihydrogenibium azorense Aguiar et al. 2004 emend. S. Naka- gawa et al. 2005b Salegentibacter McCammon and Bowman 2000 emend. Ying et al. 2007a Sulfurihydrogenibium subterraneum Takai et al. 2003 emend. S. Nakagawa et al. 2005b Schlegelella thermodepolymerans Elbanna et al. 2003 emend. Lütke- Eversloh et al. 2004 Sulfurihydrogenibium Takai et al. 2003 emend. S. Nakagawa et al. 2005b Skermanella Sly and Stackebrandt 1999 emend. Weon et al. 2007b Sulfurimonas Inagaki et al. 2003 emend. Takai et al. 2006b Sphingosinicella Maruyama et al. 2006 emend. Geueke et al. Suttonella Dewhirst et al. 1990 emend. Foster et al. 2005 2007 Syntrophobacter Boone and Bryant 1984 emend. S. Chen et al. 2005 Sphingosinicella microcystinivorans Maruyama et al. 2006 emend. Syntrophomonas McInerney et al. 1982 emend. C. Wu et al. 2006 Geueke et al. 2007 Tepidimonas Moreira et al. 2000 emend. Albuquerque et al. 2006 Staphylococcus caprae Devriese et al. 1983 emend. Kawamura et – Publication in the IJSEM: List of Changes in Taxonomic al. 1998 – Publication in the IJSEM: List of Changes in Taxo- Opinion no. 5 nomic Opinion no. 1 Tetrasphaera Maszenan et al. 2000 emend. Ishikawa and Yokota 2006 Staphylococcus vitulinus corrig. Webster et al. 1994 emend. Švec Thalassobacter Macián et al. 2005a emend. Pujalte et al. 2005b et al. 2004 Thalassomonas Macián et al. 2001 emend. Jean et al. 2006c Stappia stellulata (Rüger and Höfle 1992) Uchino et al. 1999 emend. Biebl et al. 2007 Thalassospira López-López et al. 2002 emend. C. Liu et al. 2007 Stappia Uchino et al. 1999 emend. Biebl et al. 2007 Thermoactinomyces Tsilinsky 1899 (Approved Lists 1980) emend. J.H. Yoon et al. 2005n Streptomyces cinereorectus Terekhova and Preobrazhenskaya 1986 emend. Lanoot et al. 2004 – Publication in the IJSEM: List of Thermoanaerobacter mathranii Larsen et al. 1998 emend. Carlier Changes in Taxonomic Opinion no. 1 et al. 2006 – Publication in the IJSEM: List of Changes in Taxonomic Opinion no. 5 Streptomyces colombiensis Pridham et al. 1958 (Approved Lists 1980) emend. Lanoot et al. 2004 – Publication in the IJSEM: Thermoanaerobacter Wiegel and Ljungdahl 1982 emend. Y.J. Lee List of Changes in Taxonomic Opinion no. 1 et al. 2007a Streptomyces corchorusii Ahmad and Bhuiyan 1958 (Approved Thermomicrobia Garrity and Holt 2002 emend. Hugenholtz and Lists 1980) emend. Lanoot et al. 2005 Stackebrandt 2004 Streptomyces filamentosus Okami and Umezawa 1953 (Approved Thioalkalivibrio Sorokin et al. 2001 emend. Banciu et al. 2004 – Lists 1980) emend. Lanoot et al. 2004 – Publication in the Publication in the IJSEM: List of Changes in Taxonomic Opin- IJSEM: List of Changes in Taxonomic Opinion no. 1 ion no. 2 1364 APPENDIX 1

Thiomonas cuprina Moreira and Amils 1997 emend. Kelly Publication in the IJSEM: List of Changes in Taxonomic Opin- et al. 2007 ion no. 2 – Original publication: Niggemyer et al. (2001) Thiomonas delicata (Katayama-Fujimura et al. 1984) Kelly and Desulfomusa Finster et al. 2001 pro synon. Desulfofaba Knob- Wood 2006 emend. Katayama et al. 2006 lauch et al. 1999 – Publication in the IJSEM: Abildgaard et al. Thiomonas Moreira and Amils 1997 emend. Kelly et al. 2007 (2004) [Rule 37a(1)] Tissierella Collins and Shah 1986 emend. J.W. Bae et al. 2004 Enterococcus flavescens Pompei et al. 1992 pro synon. Enterococcus casseliflavus (ex Vaughan et al. 1979) Collins et al. 1984 – Pub- Trichococcus collinsii Liu et al. 2002 emend. Pikuta et al. 2006a lication in the IJSEM: Naser et al. (2006c) Xanthomonas citri (ex Hasse 1915) Gabriel et al. 1989 emend. Enterococcus saccharominimus Vancanneyt et al. 2004c pro synon. Schaad et al. 2006 – Publication in the IJSEM: List of Changes Enterococcus italicus Fortina et al. 2004 – Publication in the in Taxonomic Opinion no. 6 IJSEM: Naser et al. (2006c) Yania W.J. Li et al. 2004a emend. W.J. Li et al. 2005e Falcivibrio grandis Hammann et al. 1984 pro synon. Mobiluncus Zymomonas mobilis subsp. mobilis (Lindner 1928) De Ley and mulieris Spiegel and Roberts 1984 – Publication in the IJSEM: Swings 1976 emend. Coton et al. 2006 List of Changes in Taxonomic Opinion no. 1 – Original pub- Zymomonas mobilis subsp. pomaceae (Millis 1956) De Ley and lication: Hoyles et al. (2004) Swings 1976 emend. Coton et al. 2006 Falcivibrio vaginalis Hammann et al. 1984 pro synon. Mobiluncus curtisii Spiegel and Roberts 1984 – Publication in the IJSEM: Synonyms List of Changes in Taxonomic Opinion no. 1 – Original pub- Aeromonas culicicola Pidiyar et al. 2002 pro synon. Aeromonas lication: Hoyles et al. (2004) veronii Hickman-Brenner et al. 1988 – Publication in the Flexibacter aggregans (Lewin 1969) Leadbetter 1974 (Approved Lists IJSEM: List of Changes in Taxonomic Opinion no. 3 – Origi- 1980) pro synon. Flexithrix dorotheae Lewin 1970 (Approved Lists nal publication: Huys et al. (2005) 1980) – Publication in the IJSEM: Hosoya and Yokota (2007a) Bacillus axarquiensis Ruiz-García et al. 2005 pro synon. Bacillus Gaetbulimicrobium J.H. Yoon et al. 2006a pro synon. Aquimarina mojavensis Roberts et al. 1994 – Publication in the IJSEM: Nedashkovskaya et al. 2005h – Publication in the IJSEM: Wang et al. (2007) Nedashkovskaya et al. (2006f) [Rule 37a(1)] Bacillus malacitensis Ruiz-García et al. 2005 pro synon. Bacillus Gordonia nitida Yoon et al. 2000 pro synon. Gordonia alkanivorans mojavensis Roberts et al. 1994 – Publication in the IJSEM: L.T. Kummer et al. 1999 – Publication in the IJSEM: Arenskötter Wang et al. (2007) et al. (2005) Brevibacterium liquefaciens Okabayashi and Masuo 1960 Hemophilus paraphrophilus Zinnemann et al. 1968 pro synon. Hemo- (Approved Lists 1980) pro synon. Arthrobacter nicotianae Gio- philus aphrophilus Khairat 1940 (Approved Lists 1980) – Publi- vannozzi-Sermanni 1959 (Approved List 1980) – Publication cation in the IJSEM: Nørskov-Lauritsen and Kilian (2006) in the IJSEM: Gelsomino et al. (2004) Hongiella Yi and Chun 2004 pro synon. Algoriphagus Bowman Caenibacterium Manaia et al. 2003 pro synon. Schlegelella Elbanna et al. 2003 – Publication in the IJSEM: Nedashkovskaya et al. et al. 2003 – Publication in the IJSEM: Lütke-Eversloh et al. (2007b) [Rule 37a(1)] (2004) [Rule 37a(1)] Jannaschia cystaugens Adachi et al. 2004 synon. Thalassobacter Caenibacterium thermophilum Manaia et al. 2003 pro synon. stenotrophicus Macián et al. 2005a – Publication in the IJSEM: Schlegelella thermodepolymerans Elbanna et al. 2003 – Publica- Pujalte et al. (2005b) [Rules 15 and 17] tion in the IJSEM: Lütke-Eversloh et al. (2004) Kluyvera cochleae Müller et al. 1996 pro synon. Kluyvera interme- Chimaereicella Tiago et al. 2006a pro synon. Algoriphagus Bow- dia (Izard et al. 1980) Pavan et al. 2005 – Publication in the man et al. 2003 – Publication in the IJSEM: Nedashkovskaya IJSEM: Pavan et al. (2005) et al. (2007b) [Rule 37a(1)] Lactobacillus arizonensis Swezey et al. 2000 pro synon. Lactobacil- Clostridium absonum Nakamura et al. 1973 (Approved Lists 1980) lus plantarum (Orla-Jensen 1919) Bergey et al. 1923 (Approved pro synon. Clostridium sardiniense Prévot 1938 (Approved Lists Lists 1980) – Publication in the IJSEM: Kostinek et al. (2005) 1980) – Publication in the IJSEM: X. Wang et al. (2005) Lactobacillus cellobiosus Rogosa et al. 1953 (Approved Lists Clostridium hastiforme MacLennan 1939 (Approved Lists 1980) 1980) pro synon. Lactobacillus fermentum Beijerinck 1901 pro synon. Tissierella praeacuta (Tissier 1908) Collins and (Approved Lists 1980) – Publication in the IJSEM: Della- Shah 1986 – Publication in the IJSEM: J.W. Bae et al. (2004) glio et al. (2004) Corynebacterium mooreparkense Brennan et al. 2001 pro synon. Lactobacillus curvatus subsp. melibiosus Torriani et al. 1996 pro Corynebacterium variabile corrig. (Müller 1961) Collins 1987 – synon. Lactobacillus sakei subsp. carnosus corrig. Torriani et al. Publication in the IJSEM: Gelsomino et al. (2005) 1996 – Publication in the IJSEM: Koort et al. (2004) Corynebacterium nigricans Shukla et al. 2004 pro synon. Coryne- Lactobacillus cypricasei Lawson et al. 2001 pro synon. Lactobacillus bacterium aurimucosum Yassin et al. 2002 – Publication in the acidipiscis Tanasupawat et al. 2000 – Publication in the IJSEM: IJSEM: List of Changes in Taxonomic Opinion no. 1 – Origi- Naser et al. (2006b) nal publication: Daneshvar et al. (2004) Lactobacillus durianis Leisner et al. 2002 pro synon. Lactobacil- Desulfitobacterium frappieri Bouchard et al. 1996 pro synon. lus vaccinostercus Kozaki and Okada 1983 – Publication in the Desulfitobacterium hafniense Christiansen and Ahring 1996 – IJSEM: Dellaglio et al. (2006) APPENDIX 1 1365

Lactobacillus ferintoshensis Simpson et al. 2002 pro synon. Lacto- Salmonella choleraesuis subsp. choleraesuis corrig. (Smith 1894) bacillus parabuchneri Farrow et al. 1989 – Publication in the Weldin 1927 synon. Salmonella enterica subsp. enterica (ex IJSEM: Vancanneyt et al. (2005a) Kauffmann and Edwards 1952) Le Minor and Popoff 1987 – Lactobacillus suntoryeus Cachat and Priest 2005 pro synon. Lactoba- Publication in the IJSEM: Tindall et al. (2005) cillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Salmonella enteritidis (Gaertner 1888) Castellani and Chalmers Lists 1980) – Publication in the IJSEM: Naser et al. (2006a) 1919 (Approved Lists 1980) synon. Salmonella enterica subsp. Lactobacillus thermotolerans Niamsup et al. 2003 pro synon. Lacto- enterica (ex Kauffmann and Edwards 1952) Le Minor and bacillus ingluviei Baele et al. 2003 – Publication in the IJSEM: Popoff 1987 – Publication in the IJSEM: Tindall et al. (2005) Felis et al. (2006) Salmonella paratyphi (ex Kayser 1902) Ezaki et al. 2000. synon. Leuconostoc argentinum Dicks et al. 1993 pro synon. Leuconostoc Salmonella enterica subsp. enterica (ex Kauffmann and Edwards lactis Garvie 1960 (Approved Lists 1980) – Publication in the 1952) Le Minor and Popoff 1987 – Publication in the IJSEM: IJSEM: Vancanneyt et al. (2006c) Tindall et al. (2005) Marinicola J.H. Yoon et al. 2005c pro synon. Roseivirga Nedashk- Salmonella typhi (Schroeter 1886) Warren and Scott 1930 ovskaya et al. 2005c – Publication in the IJSEM: Nedashkovs- (Approved Lists 1980) synon. Salmonella enterica subsp. enter- kaya et al. (2005c) and S.C. Lau et al. (2006b) [Rule 37a(1)] ica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987 – Publication in the IJSEM: Tindall et al. (2005) Marinobacter aquaeolei Nguyen et al. 1999 pro synon. Marinobacter hydrocarbonoclasticus Gauthier et al. 1992 – Publication in the Salmonella typhimurium (Loeffler 1892) Castellani and Chalmers IJSEM: Márquez and Ventosa (2005) 1919 (Approved Lists 1980) synon. Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Methanogenium frittonii Harris et al. 1996 pro synon. Metha- Popoff 1987 – Publication in the IJSEM: Tindall et al. (2005) noculleus thermophilus corrig. (Rivard and Smith 1982) Mae- strojuán et al. 1990 – Publication in the IJSEM: Spring et Shewanella affinis pro synon. Shewanella colwelliana (Weiner et al. al. (2005a) 1988) Coyne et al. 1990 – Publication in the IJSEM: Satomi et al. (2007) Methylobacterium chloromethanicum McDonald et al. 2001 pro synon. Methylobacterium extorquens (Urakami and Komagata Silicibacter Petursdottir and Kristjansson 1999 pro synon. Rue- 1984) Bousfield and Green 1985 – Publication in the IJSEM: geria Uchino et al. 1999 – Publication in the IJSEM: Yi et al. List of Changes in Taxonomic Opinion no. 4 – Original pub- (2007) [Rule 37a(1)] lication: Y. Kato et al. (2005) Sphingomonas subarctica pro synon. Novosphingobium resinovorum Methylobacterium dichloromethanicum Doronina et al. 2000 pro (Delaporte and Daste 1956) Lim et al. 2007 – Publication in synon. Methylobacterium extorquens (Urakami and Komagata the IJSEM: Y.W. Lim et al. (2007) 1984) Bousfield and Green 1985 – Publication in the IJSEM: Staleya Labrenz et al. 2000 pro synon. Sulfitobacter Sorokin 1996 List of Changes in Taxonomic Opinion no. 4 – Original pub- – Publication in the IJSEM: J.H. Yoon et al. (2007x) [Rule lication: Y. Kato et al. (2005) 37a(1)] Methylobacterium lusitanum Doronina et al. 2002 pro synon. Meth- Stanierella Nedashkovskaya et al. 2005h pro synon. Aquimarina ylobacterium rhodesianum Green et al. 1988 – Publication in the Nedashkovskaya et al. 2005h – Publication in the IJSEM: IJSEM: List of Changes in Taxonomic Opinion no. 4 – Origi- Nedashkovskaya et al. (2006f) [Rule 37a(1)] nal publication: Y. Kato et al. (2005) Staphylococcus pulvereri Zakrzewska-Czerwiñska et al. 1995 pro Novosphingobium subarcticum (Nohynek et al. 1996) pro synon. synon. Staphylococcus vitulinus corrig. Webster et al. 1994 – Novosphingobium resinovorum (Delaporte and Daste 1956) Lim Publication in the IJSEM: Švec et al. (2004) et al. 2007 – Publication in the IJSEM: Y.M. Lim et al. Stenotrophomonas africana Drancourt et al. 1997 pro synon. (2007) Stenotrophomonas maltophilia (Hugh 1981) Palleroni and Brad- Pseudomonas chloritidismutans Wolterink et al. 2002 pro synon. bury 1993 – Publication in the IJSEM: Coenye et al. (2004b) Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius Streptococcus difficilis corrig. Eldar et al. 1995 pro synon. Streptococ- 1946 (Approved Lists 1980) – Publication in the IJSEM: List cus agalactiae Lehmann and Neumann 1896 (Approved Lists of Changes in Taxonomic Opinion no. 4 – Original publica- 1980) – Publication in the IJSEM: Kawamura et al. (2005) tion: Cladera et al. (2006) Streptomyces arabicus Shibata et al. 1957 (Approved Lists 1980) Pseudomonas multiresinivorans Mohn et al. 1999 pro synon. pro synon. Streptomyces vinaceus Jones 1952 (Approved Lists Pseudomonas nitroreducens Iizuka and Komagata 1964 1980) – Publication in the IJSEM: List of Changes in Taxo- (Approved Lists 1980) emend. Lang et al. 2007a – Publica- nomic Opinion no. 1 – Original publication: Lanoot et al. tion in the IJSEM: Lang et al. (2007a) (2004) Roseomonas fauriae Rihs et al. 1998 pro synon. Azospirillum brasi- Streptomyces argenteolus Tresner et al. 1961 (Approved Lists 1980) lense corrig. Tarrand et al. 1979 (Approved Lists 1980) – Pub- pro synon. Streptomyces griseus (Krainsky 1914) Waksman and lication in the IJSEM: Helsel et al. (2006) Henrici 1948 (Approved Lists 1980) – Publication in the Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 IJSEM: Z. Liu et al. (2005b) (Approved Lists 1980) synon. Salmonella enterica (ex Kauff- Streptomyces caviscabies Goyer et al. 1996 pro synon. Streptomyces gri- mann and Edwards 1952) Le Minor and Popoff 1987 – Publi- seus (Krainsky 1914) Waksman and Henrici 1948 (Approved cation in the IJSEM: Tindall et al. (2005) Lists 1980) – Publication in the IJSEM: Z. Liu et al. (2005b) 1366 APPENDIX 1

Streptomyces chibaensis Suzuki et al. 1958 (Approved Lists 1980) Taxonomic Opinion no. 1 – Original publication: Lanoot et pro synon. Streptomyces corchorusii Ahmad and Bhuiyan 1958 al. (2004) (Approved Lists 1980) – Publication in the IJSEM: Lanoot Streptomyces roseodiastaticus (Duché 1934) Waksman 1953 et al. (2005) (Approved Lists 1980) pro synon. Streptomyces tricolor (Wollen- Streptomyces chrysomallus Lindenbein 1952 (Approved Lists 1980) weber 1920) Waksman 1961 (Approved Lists 1980) – Publica- pro synon. Streptomyces anulatus (Beijerinck 1912) Waksman tion in the IJSEM: List of Changes in Taxonomic Opinion no. 1953 (Approved Lists 1980) – Publication in the IJSEM: 1 – Original publication: Lanoot et al. (2004) Lanoot et al. (2005) [Rule 37a(1)] Streptomyces roseoflavus Arai 1951 (Approved Lists 1980) pro Streptomyces chrysomallus subsp. chrysomallus Lindenbein 1952 synon. Streptomyces fradiae (Waksman and Curtis 1916) Waks- (Approved Lists 1980) pro synon. Streptomyces anulatus (Bei- man and Henrici 1948 (Approved Lists 1980) – Publication jerinck 1912) Waksman 1953 (Approved Lists 1980) – Publi- in the IJSEM: List of Changes in Taxonomic Opinion no. 1 cation in the IJSEM: Lanoot et al. (2005) – Original publication: Lanoot et al. (2004) Streptomyces citreofluorescens (Korenyako et al. 1960) Pridham Streptomyces roseosporus Falcão de Morais and Dália Maia 1961 1970 (Approved Lists 1980) pro synon. Streptomyces anulatus (Approved Lists 1980) pro synon. Streptomyces filamentosus (Beijerinck 1912) Waksman 1953 (Approved Lists 1980) – Okami and Umezawa 1953 (Approved Lists 1980) – Publica- Publication in the IJSEM: Lanoot et al. (2005) tion in the IJSEM: List of Changes in Taxonomic Opinion no. Streptomyces cochleatus Nakagaito et al. 1993 pro synon. Streptomy- 1 – Original publication: Lanoot et al. (2004) ces cinereorectus Terekhova and Preobrazhenskaya 1986 – Pub- Streptomyces setonii (Millard and Burr 1926) Waksman 1953 lication in the IJSEM: List of Changes in Taxonomic Opinion (Approved Lists 1980) pro synon. Streptomyces griseus (Krain- no. 1 – Original publication: Lanoot et al. (2004) sky 1914) Waksman and Henrici 1948 (Approved Lists 1980) Streptomyces distallicus (Locci et al. 1969) Witt and Stackebrandt – Publication in the IJSEM: Z. Liu et al. (2005b) 1991 pro synon. Streptomyces colombiensis Pridham et al. 1958 Streptomyces willmorei (Erikson 1935) Waksman and Henrici 1948 (Approved Lists 1980) – Publication in the IJSEM: List of (Approved Lists 1980) pro synon. Streptomyces microflavus Changes in Taxonomic Opinion no. 1 – Original publication: (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists Lanoot et al. (2004) 1980) – Publication in the IJSEM: Lanoot et al. (2005) Streptomyces flaviscleroticus (ex Pridham 1970) Goodfellow et al. Syntrophospora Zhao et al. 1990 pro synon. Syntrophomonas McIn- 1986 pro synon. Streptomyces minutiscleroticus (Thirumalachar erney et al. 1982 – Publication in the IJSEM: C. Wu et al. 1965) Pridham 1970 (Approved Lists 1980) – Publication in (2006) [Rule 37a(1)] the IJSEM: Lanoot et al. (2005) C. Wu et al. 2006 propose to transfer Syntrophospora bryantii Streptomyces fluorescens (Krasil’nikov 1958) Pridham 1970 (Stieb and Schink 1985) Zhao et al. 1990 (the type species (Approved Lists 1980) pro synon. Streptomyces anulatus (Bei- of the genus Syntrophospora Zhao et al. 1990) to the genus jerinck 1912) Waksman 1953 (Approved Lists 1980) – Publi- Syntrophomonas McInerney et al. 1982 as Syntrophomonas bry- cation in the IJSEM: Lanoot et al. (2005) antii (Stieb and Schink 1985) C. Wu et al. 2006, comb. nov. Streptomyces griseus subsp. alpha (Ciferri 1927) Pridham 1970 According to Rule 37a(1), bacteriologists adhering to this (Approved Lists 1980) pro synon. Streptomyces microflavus proposal should change the name Syntrophospora Zhao et (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists al. 1990 to Syntrophomonas McInerney et al. 1982. However, 1980) – Publication in the IJSEM: Lanoot et al. (2005) Syntrophomonas bryantii (Stieb and Schink 1985) C. Wu et al. 2006 is not validly published [see above Syntrophomonas bryan- Streptomyces griseus subsp. cretosus Pridham 1970 (Approved Lists tii (Stieb and Schink 1985) C. Wu et al. 2006, 2335] 1980) pro synon. Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980) – Publica- Thermoterrabacterium Slobodkin et al. 1997 pro synon. Carboxy- tion in the IJSEM: Lanoot et al. (2005) dothermus Svetlichny et al. 1991 – Publication in the IJSEM: Slobodkin et al. (2006a) [Rule 37a(1)] Streptomyces lipmanii (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980) pro synon. Streptomy- Trichlorobacter De Wever et al. 2001 pro synon. Geobacter Lovley et al. ces microflavus (Krainsky 1914) Waksman and Henrici 1948 1995 – Publication in the IJSEM: Nevin et al. (2007) [Rule 37a(1)] (Approved Lists 1980) – Publication in the IJSEM: Lanoot et Wautersia eutropha (Davis 1969) Vaneechoutte et al. 2004 pro al. (2005) synon. Cupriavidus necator Makkar and Casida 1987 – Publica- Streptomyces nigrifaciens Waksman 1961 (Approved Lists 1980) tion in the IJSEM: Vandamme and Coenye (2004) pro synon. Streptomyces flavovirens (Waksman 1923) Waksman Wautersia Vaneechoutte et al. 2004 pro synon. Cupriavidus Mak- and Henrici 1948 (Approved Lists 1980) – Publication in the kar and Casida 1987 – Publication in the IJSEM: Vandamme IJSEM: Lanoot et al. (2005) and Coenye 2004 [Rule 37a(1)] Streptomyces phaeoviridis Shinobu 1957 (Approved Lists 1980) pro Weissella kimchii Choi et al. 2002 pro synon. Weissella cibaria Björk- synon. Streptomyces phaeopurpureus Shinobu 1957 (Approved roth et al. 2002 – Publication in the IJSEM: Ennahar and Cai Lists 1980) – Publication in the IJSEM: List of Changes in (2004) APPENDIX 1 1367

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Adachi, M., T. Kanno, R. Okamoto, A. Shinozaki, K. Fujikawa-Adachi bic, proteolytic, psychrophilic bacterium isolated from lake sediment and T. Nishijima. 2004. Jannaschia cystaugens sp. nov., an Alexandrium of Schirmacher Oasis, Antarctica. Int. J. Syst. Evol. Microbiol. 56: (Dinophyceae) cyst formation-promoting bacterium from Hiroshima 715–720. Bay, Japan. Int. J. Syst. Evol. Microbiol. 54: 1687–1692. Alauzet, C., F. Mory, J.P. Carlier, H. Marchandin, E. Jumas-Bilak and A. Addison, S.L., S.M. Foote, N.M. Reid and G. Lloyd-Jones. 2007. Lozniewski. 2007. Prevotella nanceiensis sp. nov., isolated from human Novosphingobium nitrogenifigens sp. nov., a polyhydroxyalkanoate-accu- clinical samples. Int. J. Syst. Evol. Microbiol. 57: 2216–2220. mulating diazotroph isolated from a New Zealand pulp and paper Al-Bari, M.A., M.S. Bhuiyan, M.E. Flores, P. Petrosyan, M. García-Varela wastewater. Int. J. Syst. Evol. Microbiol. 57: 2467–2471. and M.A. Islam. 2005. Streptomyces bangladeshensis sp. nov., isolated Adékambi, T., M. Reynaud-Gaubert, G. Greub, M.J. Gevaudan, B. La from soil, which produces bis-(2-ethylhexyl)phthalate. Int. J. Syst. Scola, D. Raoult and M. Drancourt. 2004. Amoebal coculture of Evol. Microbiol. 55: 1973–1977. “Mycobacterium massiliense” sp. nov. from the sputum of a patient with Albert, R.A., J. Archambault, R. Rosselló-Mora, B.J. Tindall and M. hemoptoic pneumonia. J. Clin. Microbiol. 42: 5493–5501. Matheny. 2005. Bacillus acidicola sp. nov., a novel mesophilic, acido- Adékambi, T., A. Stein, J. Carvajal, D. Raoult and M. Drancourt. 2006a. philic species isolated from acidic Sphagnum peat bogs in Wisconsin. Description of Mycobacterium conceptionense sp. nov., a Mycobacterium Int. J. Syst. Evol. Microbiol. 55: 2125–2130. fortuitum group organism isolated from a posttraumatic osteitis Albert, R.A., J. Archambault, M. Lempa, B. Hurst, C. Richardson, S. inflammation. J. Clin. Microbiol. 44: 1268–1273. Gruenloh, M. 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Truepera radiovictrix gen. phile from terrestrial hot springs in the Azores. Int. J. Syst. Evol. nov., sp. nov., a new radiation resistant species and the proposal of Microbiol. 54: 33–39. Trueperaceae fam. nov. FEMS Microbiol Lett. 247: 161–169. Aguilera, M., A. Cabrera, C. Incerti, S. Fuentes, N.J. Russell, A. Ramos- Albuquerque, L., I. Tiago, A. Veríssimo and M.S. da Costa. 2006. Tepidi- Cormenzana and M. Monteoliva-Sánchez. 2007. Chromohalobacter sal- monas thermarum sp. nov., a new slightly thermophilic betaproteobac- arius sp. nov., a moderately halophilic bacterium isolated from a solar terium isolated from the Elisenquelle in Aachen and emended saltern in Cabo de Gata, Almeria, southern Spain. Int. J. Syst. Evol. description of the genus Tepidimonas. Syst. Appl. Microbiol. 29: 450– Microbiol. 57: 1238–1242. 456. Ahmed, I., A. Yokota and T. Fujiwara. 2007a. A novel highly boron toler- Albuquerque, L., I. Tiago, F.A. Rainey, M. Taborda, M.F. Nobre, A. ant bacterium, Bacillus boroniphilus sp. nov., isolated from soil, that Veríssimo and M.S. da Costa. 2007. Salirhabdus euzebyi gen. nov., sp. requires boron for its growth. Extremophiles. 11: 217–224. nov., a Gram-positive, halotolerant bacterium isolated from a sea salt Ahmed, I., A. Yokota and T. Fujiwara. 2007b. Gracilibacillus boraciitolerans evaporation pond. Int. J. Syst. Evol. Microbiol. 57: 1566–1571. sp. nov., a highly boron-tolerant and moderately halotolerant bacte- Allan, R.N., L. Lebbe, J. Heyrman, P. De Vos, C.J. Buchanan and N.A. rium isolated from soil. Int. J. Syst. Evol. Microbiol. 57: 796–802. Logan. 2005. Brevibacillus levickii sp. nov. and Aneurinibacillus terra- Ahmed, I., A. Yokota and T. Fujiwara. 2007c. Chimaereicella boritolerans novensis sp. nov., two novel thermoacidophiles isolated from geo- sp. nov., a boron-tolerant and alkaliphilic bacterium of the family thermal soils of northern Victoria Land, Antarctica. Int. J. Syst. Evol. Flavobacteriaceae isolated from soil. Int. J. Syst. Evol. Microbiol. 57: Microbiol. 55: 1039–1050. 986–992. Allen, T.D., P.A. Lawson, M.D. Collins, E. Falsen and R.S. Tanner. 2006. Ahmed, I., A. Yokota, A. Yamazoe and T. Fujiwara. 2007d. Proposal of Lysini- Cloacibacterium normanense gen. nov., sp. nov., a novel bacterium in bacillus boronitolerans gen. nov. sp. nov. and transfer of Bacillus fusiformis the family Flavobacteriaceae isolated from municipal wastewater. Int. J. to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacil- Syst. Evol. Microbiol. 56: 1311–1316. lus sphaericus comb. nov. Int. J. Syst. Evol. Microbiol. 57: 1117–1125. Amakata, D., Y. Matsuo, K. Shimono, J.K. Park, C.S. Yun, H. Matsuda, A. Aizawa, T., N.B. Ve, K. Kimoto, N. Iwabuchi, H. Sumida, I. Hasegawa, S. Yokota and M. Kawamukai. 2005. Mitsuaria chitosanitabida gen. nov., Sasaki, T. Tamura, T. Kudo, K. Suzuki, M. Nakajima and M. 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Evol. Micro- Alam, S.I., L. Singh, S. Dube, G.S.N. Reddy and S. Shivaji. 2003. Psy- biol. 56: 443–448. chrophilic Planococcus maitriensis sp. nov. from Antarctica. Syst. Appl. An, D., S. Cai and X. Dong. 2006b. Actinomyces ruminicola sp. nov., iso- Microbiol. 26: 505–510. lated from cattle rumen. Int. J. Syst. Evol. Microbiol. 56: 2043–2048. Alam, S.I., A. Dixit, G.S. Reddy, S. Dube, M. Palit, S. Shivaji and L. An, D.S., H.G. Lee, W.T. Im, Q.M. Liu and S.T. Lee. 2007a. Segetibacter Singh. 2006. Clostridium schirmacherense sp. nov., an obligately anaero- koreensis gen. nov., sp. nov., a novel member of the phylum Bacteroi- APPENDIX 1 1369

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Microbiol. 55: 673–679. Halochromatium roseum sp. nov., a non-motile phototrophic gam- Asker, D., T. Beppu and K. Ueda. 2007a. Zeaxanthinibacter enoshimensis maproteobacterium with gas vesicles, and emended description of gen. nov., sp. nov., a novel zeaxanthin-producing marine bacterium the genus Halochromatium. Int. J. Syst. Evol. Microbiol. 57, 2110– of the family Flavobacteriaceae, isolated from seawater off Enoshima 2113. Island, Japan. Int. J. Syst. Evol. Microbiol. 57: 837–843. Anil Kumar, P., T.N. Srinivas, C. Sasikala and V. Ramana Ch. 2007d. Asker, D., T. Beppu and K. Ueda. 2007b. Sphingomonas jaspsi sp. nov., a Rhodobacter changlensis sp. nov., a psychrotolerant, phototrophic alp- novel carotenoid-producing bacterium isolated from Misasa, Tottori, haproteobacterium from the Himalayas of India. Int. J. Syst. Evol. Japan. Int. J. Syst. Evol. Microbiol. 57: 1435–1441. Microbiol. 57: 2568–2571. Aslam, Z., W.T. Im, M.K. Kim and S.T. Lee. 2005a. Flavobacterium granuli Antunes, A., L. Franca, F.A. Rainey, R. Huber, M.F. Nobre, K.J. Edwards sp. nov., isolated from granules used in a wastewater treatment plant. and M.S. da Costa. 2007. Marinobacter salsuginis sp. nov., isolated from Int. J. Syst. Evol. Microbiol. 55: 747–751. the brine-seawater interface of the Shaban Deep, Red Sea. Int. J. Syst. Aslam, Z., W.T. Im, L.N. Ten and S.T. Lee. 2005b. Phenylobacterium kore- Evol. Microbiol. 57: 1035–1040. ense sp. nov., isolated from South Korea. Int. J. Syst. Evol. Microbiol. Ara, I. and T. Kudo. 2006. Three novel species of the genus Catella- 55: 2001–2005. tospora, Catellatospora chokoriensis sp. nov., Catellatospora coxensis sp. Aslam, Z., W.T. Im, L.N. Ten, M.J. Lee, K.H. Kim and S.T. Lee. 2006. nov. and Catellatospora bangladeshensis sp. nov., and transfer of Catel- Lactobacillus siliginis sp. nov., isolated from wheat sourdough in South latospora citrea subsp. methionotrophica Asano and Kawamoto 1988 to Korea. Int. J. Syst. 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Microbiol. 57: 633–638. cies as Sphaerosporangium melleum sp. nov., Sphaerosporangium rubeum Ast, J.C., I. Cleenwerck, K. Engelbeen, H. Urbanczyk, F.L. Thompson, sp. nov. and Sphaerosporangium cinnabarinum sp. nov., and transfer of P. De Vos and P.V. Dunlap. 2007. Photobacterium kishitanii sp. nov., a 1370 APPENDIX 1

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Microbiol. varius crassostreae sp. nov., a member of the Roseobacter clade and the 56: 2177–2183. apparent cause of juvenile oyster disease (JOD) in cultured Eastern Brettar, I., R. Christen, J. Bötel, H. Lünsdorf and M.G. Höfle. 2007. oysters. Int. J. Syst. Evol. Microbiol. 55: 1531–1537. Anderseniella baltica gen. nov., sp. nov., a novel marine bacterium of Boga, H.I., R. Ji, W. Ludwig and A. Brune. 2007. Sporotalea propionica the Alphaproteobacteria isolated from sediment in the central Baltic gen. nov. sp. nov., a hydrogen-oxidizing, oxygen-reducing, propioni- Sea. Int. J. Syst. Evol. Microbiol. 57: 2399–2405. genic firmicute from the intestinal tract of a soil-feeding termite. Bringel, F., A. Castioni, D.K. Olukoya, G.E. Felis, S. Torriani and F. Del- Arch. Microbiol. 187: 15–27. laglio. 2005. Lactobacillus plantarum subsp. argentoratensis subsp. nov., Bogdanova, T.I., I.A. Tsaplina, T.F. Kondrat’eva, V.I. Duda, N.E. Suzina, isolated from vegetable matrices. Int. J. Syst. Evol. Microbiol. 55: V.S. Melamud, T.P. Tourova and G.I. Karavaiko. 2006. Sulfobacillus 1629–1634. thermotolerans sp. nov., a thermotolerant, chemolithotrophic bacte- Brown, D.R., J.L. Merritt, E.R. Jacobson, P.A. Klein, J.G. Tully and M.B. rium. Int. J. Syst. Evol. Microbiol. 56: 1039–1042. Brown. 2004. Mycoplasma testudineum sp. nov., from a desert tortoise Bonilla Salinas, M., M.L. Fardeau, J.L. Cayol, L. Casalot, B.K. Patel, P. (Gopherus agassizii) with upper respiratory tract disease. Int. J. Syst. Thomas, J.L. García and B. Ollivier. 2004a. Petrobacter succinatiman- Evol. Microbiol. 54: 1527–1529. dens gen. nov., sp. nov., a moderately thermophilic, nitrate-reducing Brown, D.R., D.L. Demcovitz, D.R. Plourde, S.M. Potter, M.E. Hunt, bacterium isolated from an Australian oil well. Int. J. Syst. Evol. R.D. Jones and D.S. Rotstein. 2006. Mycoplasma iguanae sp. nov., from Microbiol. 54: 645–649. a green iguana (Iguana iguana) with vertebral disease. Int. J. Syst. Bonilla Salinas, M., M.L. Fardeau, P. Thomas, J.L. Cayol, B.K. Patel and Evol. Microbiol. 56: 761–764. B. Ollivier. 2004b. Mahella australiensis gen. nov., sp. nov., a moder- Brown, J.M., R.P. Frazier, R.E. Morey, A.G. Steigerwalt, G.J. Pellegrini, ately thermophilic anaerobic bacterium isolated from an Australian M.I. Daneshvar, D.G. Hollis and M.M. McNeil. 2005. Phenotypic oil well. Int. J. Syst. Evol. Microbiol. 54: 2169–2173. and genetic characterization of clinical isolates of CDC coryneform Bora, N., M. Vancanneyt, R. Gelsomino, J. Swings, N. Brennan, T.M. group A-3: proposal of a new species of Cellulomonas, Cellulomonas Cogan, S. Larpin, N. Desmasures, F.E. Lechner, R.M. Kroppenstedt, denverensis sp. nov. J. Clin. Microbiol. 43: 1732–1737. A.C. Ward and M. Goodfellow. 2007. Agrococcus casei sp. nov., isolated Brown, J.M., A.G. Steigerwalt, R.E. Morey, M.I. Daneshvar, L.J. Romero from the surfaces of smear-ripened cheeses. Int. J. Syst. Evol. Micro- and M.M. McNeil. 2006. Characterization of clinical isolates previ- biol. 57: 92–97. ously identified as Oerskovia turbata: proposal of Cellulosimicrobium Borchert, M.S., P. Nielsen, I. Graeber, I. Kaesler, U. Szewzyk, T. Pape, funkei sp. nov. and emended description of the genus Cellulosimicro- G. Antranikian and T. Schäfer. 2007. Bacillus plakortidis sp. nov. and bium. Int. J. Syst. Evol. Microbiol. 56: 801–804. Bacillus murimartini sp. nov., novel alkalitolerant members of rRNA Buczolits, S., E.B. Denner, P. Kämpfer and H.J. Busse. 2006. Proposal group 6. Int. J. Syst. Evol. Microbiol. 57: 2888–2893. of Hymenobacter norwichensis sp. nov., classification of ‘Taxeobacter ocel- Bouchek-Mechiche, K., L. Gardan, D. Andrivon and P. Normand. 2006. latus’, ‘Taxeobacter gelupurpurascens’ and ‘Taxeobacter chitinovorans’ as Streptomyces turgidiscabies and Streptomyces reticuliscabiei: one genomic spe- Hymenobacter ocellatus sp. nov., Hymenobacter gelipurpurascens sp. nov. cies, two pathogenic groups. Int. J. Syst. Evol. Microbiol. 56: 2771–2776. and Hymenobacter chitinivorans sp. nov., respectively, and emended Bowman, J.P. 2005a. Family V. Methylocystaceae fam. nov. In Brenner, description of the genus Hymenobacter Hirsch et al. 1999. Int. J. Syst. Krieg, Staley and Garrity (Editors), Bergey’s Manual of Systematic Evol. Microbiol. 56: 2071–2078. Bacteriology, 2nd Edition, Volume 2 (The Proteobacteria), Part C (The Burns, D.G., P.H. Janssen, T. Itoh, M. Kamekura, Z. Li, G. Jensen, F. Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York, pp. Rodríguez-Valera, H. Bolhuis and M.L. Dyall-Smith. 2007. Halo- 411–413. quadratum walsbyi gen. nov., sp. nov., the square haloarchaeon of Bowman, J.P. 2005b. Order VII. Methylococcales ord. nov. In Brenner, Walsby, isolated from saltern crystallizers in Australia and Spain. Int. Krieg, Staley and Garrity (Editors), Bergey’s Manual of Systematic J. Syst. Evol. Microbiol. 57: 387–392. 1372 APPENDIX 1

Busse, H.J., E. Hauser and P. Kämpfer. 2005. Description of two novel Carrasco, I.J., M.C. Márquez, Y. Xue, Y. Ma, D.A. Cowan, B.E. Jones, species, Sphingomonas abaci sp. nov. and Sphingomonas panni sp. nov. W.D. Grant and A. Ventosa. 2007b. Salsuginibacillus kocurii gen. nov., Int. J. Syst. Evol. Microbiol. 55: 2565–2569. sp. nov., a moderately halophilic bacterium from soda-lake sediment. Busti, E., L. Cavaletti, P. Monciardini, P. Schumann, M. Rohde, M. Sosio Int. J. Syst. Evol. Microbiol. 57: 2381–2386. and S. Donadio. 2006. Catenulispora acidiphila gen. nov., sp. nov., a Carvalho M. da G.S, G., P.L. Shewmaker, A.G. Steigerwalt, R.E. Morey, novel, mycelium-forming actinomycete, and proposal of Catenulispo- A.J. Sampson, K. Joyce, T.J. Barrett, L.M. Teixeira and R.R. Facklam. raceae fam. nov. Int. J. Syst. Evol. Microbiol. 56: 1741–1746. 2006. Enterococcus caccae sp. nov., isolated from human stools. Int. J. Butler, W.R., M.M. Floyd, J.M. Brown, S.R. Toney, M.I. Daneshvar, Syst. Evol. Microbiol. 56: 1505–1508. R.C. Cooksey, J. Carr, A.G. Steigerwalt and N. Charles. 2005. Novel Castillo, A.M., M.C. Gutiérrez, M. Kamekura, Y. Ma, D.A. Cowan, B.E. mycolic acid-containing bacteria in the family Segniliparaceae fam. Jones, W.D. Grant and A. Ventosa. 2006a. Halovivax asiaticus gen. nov., including the genus Segniliparus gen. nov., with descriptions of nov., sp. nov., a novel extremely halophilic archaeon isolated from Segniliparus rotundus sp. nov. and Segniliparus rugosus sp. nov. Int. J. Inner Mongolia, China. Int. J. Syst. Evol. Microbiol. 56: 765–770. Syst. Evol. Microbiol. 55: 1615–1624. Castillo, A.M., M.C. Gutiérrez, M. Kamekura, Y. Xue, Y. Ma, D.A. Cowan, Byun, R., J.P. Carlier, N.A. Jacques, H. Marchandin and N. Hunter. 2007. B.E. Jones, W.D. Grant and A. Ventosa. 2006b. Halostagnicola larsenii Veillonella denticariosi sp. nov., isolated from human carious dentine. gen. nov., sp. nov., an extremely halophilic archaeon from a saline lake Int. J. Syst. Evol. Microbiol. 57: 2844–2848. in Inner Mongolia, China. Int. J. Syst. Evol. Microbiol. 56: 1519–1524. Caballero-Mellado, J., L. Martínez-Aguilar, G. Paredes-Valdez and P.E. Castillo, A.M., M.C. Gutiérrez, M. Kamekura, Y. Xue, Y. Ma, D.A. Cowan, Santos. 2004. Burkholderia unamae sp. nov., an N2-fixing rhizospheric B.E. Jones, W.D. Grant and A. Ventosa. 2006c. Halorubrum orientale sp. and endophytic species. Int. J. Syst. Evol. Microbiol. 54: 1165–1172. nov., a halophilic archaeon isolated from Lake Ejinor, Inner Mongolia, Cabrera, A., M. Aguilera, S. Fuentes, C. Incerti, N.J. Russell, A. Ramos- China. Int. J. Syst. Evol. Microbiol. 56: 2559–2563. Cormenzana and M. Monteoliva-Sánchez. 2007. Halomonas ind- Castillo, A.M., M.C. Gutiérrez, M. Kamekura, Y. Xue, Y. Ma, D.A. Cowan, alinina sp. nov., a moderately halophilic bacterium isolated from a B.E. Jones, W.D. Grant and A. Ventosa. 2006d. Natrinema ejinorense sp. solar saltern in Cabo de Gata, Almeria, southern Spain. Int. J. Syst. nov., isolated from a saline lake in Inner Mongolia, China. Int. J. Syst. Evol. Microbiol. 57: 376–380. Evol. Microbiol. 56: 2683–2687. Cachat, E. and F.G. Priest. 2005. Lactobacillus suntoryeus sp. nov., isolated Castillo, A.M., M.C. Gutiérrez, M. Kamekura, Y. Xue, Y. Ma, D.A. Cowan, from malt whisky distilleries. Int. J. Syst. Evol. Microbiol. 55: 31–34. B.E. Jones, W.D. Grant and A. Ventosa. 2007a. Halovivax ruber sp. Cai, J., Y. Wang, D. Liu, Y. Zeng, Y. Xue, Y. Ma and Y. Feng. 2007. Fer- nov., an extremely halophilic archaeon isolated from Lake Xilinhot, vidobacterium changbaicum sp. nov., a novel thermophilic anaerobic Inner Mongolia, China. Int. J. Syst. Evol. Microbiol. 57: 1024–1027. bacterium isolated from a hot spring of the Changbai Mountains, Castillo, A.M., M.C. Gutiérrez, M. Kamekura, Y. Xue, Y. Ma, D.A. Cowan, China. Int. J. Syst. Evol. Microbiol. 57: 2333–2336. B.E. Jones, W.D. Grant and A. Ventosa. 2007b. Halorubrum ejinorense Cámara, B., C. Strömpl, S. Verbarg, C. Spröer, D.H. Pieper and B.J. Tin- sp. nov., isolated from Lake Ejinor, Inner Mongolia, China. Int. J. dall. 2007. Pseudomonas reinekei sp. nov., Pseudomonas moorei sp. nov. Syst. Evol. Microbiol. 57: 2538–2542. and Pseudomonas mohnii sp. nov., novel species capable of degrading Caumette, P., R. Guyoneaud, J.F. Imhoff, J. Süling and V. Gorlenko. chlorosalicylates or isopimaric acid. Int. J. Syst. Evol. Microbiol. 57: 2004. Thiocapsa marina sp. nov., a novel, okenone-containing, purple 923–931. sulfur bacterium isolated from brackish coastal and marine environ- Campbell, S., R.M. Harada and Q.X. Li. 2007. Ferrimonas senticii sp. nov., ments. Int. J. Syst. Evol. Microbiol. 54: 1031–1036. a novel gammaproteobacterium isolated from the mucus of a puffer Caumette, P., R. Guyoneaud, R. Duran, C. Cravo-Laureau and fish caught in Kaneohe Bay, Hawai’i. Int. J. Syst. Evol. Microbiol. 57: R. Matheron. 2007. Rhodobium pfennigii sp. nov., a phototrophic 2670–2673. purple non-sulfur bacterium with unusual bacteriochlorophyll a Carlier, J.P., G. K’Ouas, I. Bonne, A. Lozniewski and F. Mory. 2004. Orib- antennae, isolated from a brackish microbial mat on Rangiroa atoll, acterium sinus gen. nov., sp. nov., within the family ‘Lachnospiraceae’ French Polynesia. Int. J. Syst. Evol. Microbiol. 57: 1250–1255. (phylum Firmicutes). Int. J. Syst. Evol. Microbiol. 54: 1611–1615. Cavaletti, L., P. Monciardini, P. Schumann, M. Rohde, R. Bamonte, E. Carlier, J.-P., I. Bonne and M. Bedora-Faure. 2006. Isolation from Busti, M. Sosio and S. Donadio. 2006a. Actinospica robiniae gen. nov., canned foods of a novel Thermoanaerobacter species phylogenetically sp. nov. and Actinospica acidiphila sp. nov.: proposal for Actinospicaceae related to Thermoanaerobacter mathranii (Larsen 1997): emendation of fam. nov. and Catenulisporineae subord. nov. in the order Actinomyc- the species description and proposal of Thermoanaerobacter mathranii etales. Int. J. Syst. Evol. Microbiol. 56: 1747–1753. subsp. Alimentarius subsp. nov. Anaerobe 12: 153–159. Cavaletti, L., P. Monciardini, R. Bamonte, P. Schumann, M. Rohde, M. Carlier, J.P., G. K’Ouas and X.Y. Han. 2007. Moryella indoligenes gen. Sosio and S. Donadio. 2006b. New lineage of filamentous, spore- nov., sp. nov., an anaerobic bacterium isolated from clinical speci- forming, gram-positive bacteria from soil. Appl. Environ. Microbiol. mens. Int. J. Syst. Evol. Microbiol. 57: 725–729. 72: 4360–4369. Carlsohn, M.R., I. Groth, G.Y. Tan, B. Schütze, H.P. Saluz, T. Munder, J. Cazemier, A.E., J.C. Verdoes., F.A.G. Reubsaet, J.H.P. Hackstein, C. van Yang, J. Wink and M. Goodfellow. 2007a. Amycolatopsis saalfeldensis sp. der Drift and H.J.M. Op den Camp. 2003. Promicromonospora pach- nov., a novel actinomycete isolated from a medieval alum slate mine. nodae sp. nov., a member of the (hemi)cellulolytic hindgut flora of Int. J. Syst. Evol. Microbiol. 57: 1640–1646. larvae of the scarab beetle Pachnoda marginata. Antonie van Leeu- Carlsohn, M.R., I. Groth, C. Spröer, B. Schütze, H.P. Saluz, T. Munder wenhoek. 83: 135–148. and E. Stackebrandt. 2007b. Kribbella aluminosa sp. nov., isolated from a Chambel, L., I.M. Chelo, L. Zé-Zé, L.G. Pedro, M.A. Santos and R. Ten- medieval alum slate mine. Int. J. Syst. Evol. Microbiol. 57: 1943–1947. reiro. 2006. Leuconostoc pseudoficulneum sp. nov., isolated from a ripe Carrasco, I.J., M.C. Márquez, X. Yanfen, Y. Ma, D.A. Cowan, B.E. Jones, fig. Int. J. Syst. Evol. Microbiol. 56: 1375–1381. W.D. Grant and A. Ventosa. 2006. Gracilibacillus orientalis sp. nov., a Chamkha, M., B.K.C. Bharat, J.L. Garcia and M. Labat. 2001. Isolation novel moderately halophilic bacterium isolated from a salt lake in of Clostridium bifermentans from oil mill wastewaters converting cin- Inner Mongolia, China. Int. J. Syst. Evol. Microbiol. 56: 599–604. namic acid to 3-phenylpropionic acid and emendation of the species. Carrasco, I.J., M.C. Márquez, Y. Xue, Y. Ma, D.A. Cowan, B.E. Jones, Anaerobe. 7: 189–197. W.D. Grant and A. Ventosa. 2007a. Bacillus chagannorensis sp. nov., a Chang, H.W., Y.D. Nam, H.Y. Kwon, J.R. Park, J.S. Lee, J.H. Yoon, K.G. An moderate halophile from a soda lake in Inner Mongolia, China. Int. and J.W. Bae. 2007. Marinobacterium halophilum sp. nov., a marine bacte- J. Syst. Evol. Microbiol. 57: 2084–2088. rium isolated from the Yellow Sea. Int. J. Syst. Evol. Microbiol. 57: 77–80. APPENDIX 1 1373

Chang, J.S., C.L. Chou, G.H. Lin, S.Y. Sheu and W.M. Chen. 2005. Pseu- Chenoll, E., M.C. Macián and R. Aznar. 2006. Lactobacillus rennini sp. doxanthomonas kaohsiungensis, sp. nov., a novel bacterium isolated nov., isolated from rennin and associated with cheese spoilage. Int. J. from oil-polluted site produces extracellular surface activity. Syst. Syst. Evol. Microbiol. 56: 449–452. Appl. Microbiol. 28: 137–144. Chern, L.L., E. Stackebrandt, S.F. Lee, F.L. Lee, J.K. Chen and H.M. Fu. Chang, S.C., J.T. Wang, P. Vandamme, J.H. Hwang, P.S. Chang andW.M. 2004. Chitinibacter tainanensis gen. nov., sp. nov., a chitin-degrading aer- Chen. 2004. Chitinimonas taiwanensis gen. nov., sp. nov., a novel chi- obe from soil in Taiwan. Int. J. Syst. Evol. Microbiol. 54: 1387–1391. tinolytic bacterium isolated from a freshwater pond for shrimp cul- Chiu, H.H., W.Y. Shieh, S.Y. Lin, C.M. Tseng, P.W. Chiang and I. Wag- ture. Syst. Appl. Microbiol. 27: 43–49. ner-Döbler. 2007. Alteromonas tagae sp. nov. and Alteromonas simiduii Chang, S.C., W.M. Chen, J.T. Wang and M.C. Wu. 2007. Chitinilyticum sp. nov., mercury-resistant bacteria isolated from a Taiwanese estuary. aquatile gen. nov., sp. nov., a chitinolytic bacterium isolated from a Int. J. Syst. Evol. Microbiol. 57: 1209–1216. freshwater pond used for Pacific white shrimp culture. Int. J. Syst. Cho, E.A., J.S. Lee, K.C. Lee, H.C. Jung, J.G. Pan and Y.R. Pyun. 2007. Evol. Microbiol. 57: 2854–2860. Cohnella laeviribosi sp. nov., isolated from a volcanic pond. Int. J. Syst. Chaturvedi, P., G.S. Reddy and S. Shivaji. 2005. Dyadobacter hamtensis sp. Evol. Microbiol. 57: 2902–2907. nov., from Hamta glacier, located in the Himalayas, India. Int. J. Syst. Cho, J.C. and S.J. Giovannoni. 2004a. Robiginitalea biformata gen. nov., Evol. Microbiol. 55: 2113–2117. sp. nov., a novel marine bacterium in the family Flavobacteriaceae with Chaturvedi, P. and S. Shivaji. 2006. Exiguobacterium indicum sp. nov., a psy- a higher G+C content. Int. J. Syst. Evol. Microbiol. 54: 1101–1106. chrophilic bacterium from the Hamta glacier of the Himalayan moun- Cho, J.C. and S.J. Giovannoni. 2004b. Oceanicola granulosus gen. nov., tain ranges of India. Int. J. Syst. Evol. Microbiol. 56: 2765–2770. sp. nov. and Oceanicola batsensis sp. nov., poly-beta-hydroxybutyrate- Chen, H.H., W.J. Li, S.K. Tang, R.M. Kroppenstedt, E. Stackebrandt, producing marine bacteria in the order ‘Rhodobacterales’. Int. J. Syst. L.H. Xu and C.L. Jiang. 2004. Corynebacterium halotolerans sp. nov., Evol. Microbiol. 54: 1129–1136. isolated from saline soil in the west of China. Int. J. Syst. Evol. Micro- Cho, J.C. and S.J. Giovannoni. 2006. Pelagibaca bermudensis gen. nov., biol. 54: 779–782. sp. nov., a novel marine bacterium within the Roseobacter clade in the Chen, M., X. Xiao, P. Wang, X. Zeng and F. Wang. 2005. Arthrobacter order Rhodobacterales. Int. J. Syst. Evol. Microbiol. 56: 855–859. ardleyensis sp. nov., isolated from Antarctic lake sediment and deep- Cho, J.C., K.L. Vergin, R.M. Morris and S.J. Giovannoni. 2004. Lentispha- sea sediment. Arch. Microbiol. 183: 301–305. era araneosa gen. nov., sp. nov., a transparent exopolymer producing Chen, M.Y., S.H. Wu, G.H. Lin, C.P. Lu, Y.T. Lin, W.C. Chang and S.S. marine bacterium, and the description of a novel bacterial phylum, Tsay. 2004. Rubrobacter taiwanensis sp. nov., a novel thermophilic, Lentisphaerae. Environ. Microbiol. 6: 611–621. radiation-resistant species isolated from hot springs. Int. J. Syst. Evol. Choi, D.H. and B.C. Cho. 2005. Idiomarina seosinensis sp. nov., isolated Microbiol. 54: 1849–1855. from hypersaline water of a solar saltern in Korea. Int. J. Syst. Evol. Chen, S. and X. Dong. 2004. Acetanaerobacterium elongatum gen. nov., Microbiol. 55: 379–383. sp. nov., from paper mill waste water. Int. J. Syst. Evol. Microbiol. 54: Choi, D.H. and B.C. Cho. 2006a. Lutibacter litoralis gen. nov., sp. nov., a 2257–2262. marine bacterium of the family Flavobacteriaceae isolated from tidal Chen, S. and X. Dong. 2005. Proteiniphilum acetatigenes gen. nov., sp. flat sediment. Int. J. Syst. Evol. Microbiol. 56: 771–776. nov., from a UASB reactor treating brewery wastewater. Int. J. Syst. Choi, D.H. and B.C. Cho. 2006b. Shimia marina gen. nov., sp. nov., a Evol. Microbiol. 55: 2257–2261. novel bacterium of the Roseobacter clade isolated from biofilm in a Chen, S., X. Liu and X. Dong. 2005. Syntrophobacter sulfatireducens sp. coastal fish farm. Int. J. Syst. Evol. Microbiol. 56: 1869–1873. nov., a novel syntrophic, propionate-oxidizing bacterium isolated Choi, D.H. and B.C. Cho. 2006c. Citreimonas salinaria gen. nov., sp. nov., from UASB reactors. Int. J. Syst. Evol. Microbiol. 55: 1319–1324. a member of the Roseobacter clade isolated from a solar saltern. Int. J. Chen, S., L. Song and X. Dong. 2006. Sporacetigenium mesophilum gen. Syst. Evol. Microbiol. 56: 2799–2803. nov., sp. nov., isolated from an anaerobic digester treating municipal Choi, D.H., Y.G. Kim, C.Y. Hwang, H. Yi, J. Chun and B.C. Cho. 2006a. solid waste and sewage. Int. J. Syst. Evol. Microbiol. 56: 721–725. Tenacibaculum litoreum sp. nov., isolated from tidal flat sediment. Int. Chen, T.L., Y.J. Chou, W.M. Chen, B. Arun and C.C. Young. 2006. Tepidi- J. Syst. Evol. Microbiol. 56: 635–640. monas taiwanensis sp. nov., a novel alkaline-protease-producing bacte- Choi, D.H., H. Yi, J. Chun and B.C. Cho. 2006b. Jannaschia seosinensis sp. rium isolated from a hot spring. Extremophiles. 10: 35–40. nov., isolated from hypersaline water of a solar saltern in Korea. Int. Chen, W.M., J.S. Chang, C.H. Chiu, S.C. Chang, W.C. Chen and C.M. J. Syst. Evol. Microbiol. 56: 45–49. Jiang. 2005. Caldimonas taiwanensis sp. nov., a amylase producing bac- Choi, D.H., J.C. Cho, B.D. Lanoil, S.J. Giovannoni and B.C. Cho. 2007. terium isolated from a hot spring. Syst. Appl. Microbiol. 28: 415–420. Maribius salinus gen. nov., sp. nov., isolated from a solar saltern and Chen, W.M., E.K. James, T. Coenye, J.H. Chou, E. Barrios, S.M. de Faria, Maribius pelagius sp. nov., cultured from the Sargasso Sea, belonging G.N. Elliott, S.Y. Sheu, J.I. Sprent and P. Vandamme. 2006. Burkholderia to the Roseobacter clade. Int. J. Syst. Evol. Microbiol. 57: 270–275. mimosarum sp. nov., isolated from root nodules of Mimosa spp. from Tai- Choi, J.H., W.T. Im, Q.M. Liu, J.S. Yoo, J.H. Shin, S.K. Rhee and D.H. wan and South America. Int. J. Syst. Evol. Microbiol. 56: 1847–1851. Roh. 2007. Planococcus donghaensis sp. nov., a starch-degrading bacte- Chen, W.M., S.M. de Faria, E.K. James, G.N. Elliott, K.Y. Lin, J.H. Chou, rium isolated from the East Sea, South Korea. Int. J. Syst. Evol. Micro- S.Y. Sheu, M. Cnockaert, J.I. Sprent and P. Vandamme. 2007. Burk- biol. 57: 2645–2650. holderia nodosa sp. nov., isolated from root nodules of the woody Bra- Choi, D.H., H.M. Kim, J.H. Noh and B.C. Cho. 2007. Nocardioides mari- zilian legumes Mimosa bimucronata and Mimosa scabrella. Int. J. Syst. nus sp. nov. Int. J. Syst. Evol. Microbiol. 57: 775–779. Evol. Microbiol. 57: 1055–1059. Choi, T.H., H.K. Lee, K. Lee and J.C. Cho. 2007. Ulvibacter antarcticus Chen, Y.G., X.L. Cui, R. Pukall, H.M. Li, Y.L. Yang, L.H. Xu, M.L. sp. nov., isolated from Antarctic coastal seawater. Int. J. Syst. Evol. Wen, Q. Peng and C.L. Jiang. 2007. Salinicoccus kunmingensis sp. Microbiol. 57: 2922–2925. nov., a moderately halophilic bacterium isolated from a salt mine Chou, J.H., W.M. Chen, A.B. Arun and C.C. Young. 2007a. Trabulsiella in Yunnan, south-west China. Int. J. Syst. Evol. Microbiol. 57: 2327– odontotermitis sp. nov., isolated from the gut of the termite Odontot- 2332. ermes formosanus Shiraki. Int. J. Syst. Evol. Microbiol. 57: 696–700. Cheng, L., T.L. Qiu, X.B. Yin, X.L. Wu, G.Q. Hu, Y. Deng and H. Zhang. Chou, J.H., Y.J. Chou, K.Y. Lin, S.Y. Sheu, D.S. Sheu, A.B. Arun, C.C. 2007. Methermicoccus shengliensis gen. nov., sp. nov., a thermophilic, Young and W.M. Chen. 2007b. Paenibacillus fonticola sp. nov., isolated methylotrophic methanogen isolated from oil-production water, and from a warm spring. Int. J. Syst. Evol. Microbiol. 57: 1346–1350. proposal of Methermicoccaceae fam. nov. Int. J. Syst. Evol. Microbiol. Chou, J.H., K.Y. Lin, M.C. Lin, S.Y. Sheu, Y.H. Wei, A.B. Arun, C.C. 57: 2964–2969. Young and W.M. Chen. 2007c. Brachybacterium phenoliresistens sp. nov., 1374 APPENDIX 1

isolated from oil-contaminated coastal sand. Int. J. Syst. Evol. Micro- Collins, M.D., E. Falsen, K. Brownlee and P.A. Lawson. 2004a. Helcococ- biol. 57: 2674–2679. cus sueciensis sp. nov., isolated from a human wound. Int. J. Syst. Evol. Chou, J.H., S.Y. Sheu, K.Y. Lin, W.M. Chen, A.B. Arun and C.C. Young. Microbiol. 54: 1557–1560. 2007d. Comamonas odontotermitis sp. nov., isolated from the gut of Collins, M.D., L. Hoyles, G. Foster and E. Falsen. 2004b. Corynebacterium the termite Odontotermes formosanus. Int. J. Syst. Evol. Microbiol. 57: caspium sp. nov., from a Caspian seal (Phoca caspica). Int. J. Syst. Evol. 887–891. Microbiol. 54: 925–928. Chou, Y.J., S.Y. Sheu, D.S. Sheu, J.T. Wang and W.M. Chen. 2006. Collins, M.D., T. Lundström, C. Welinder-Olsson, I. Hansson, O. Wattle, Schlegelella aquatica sp. nov., a novel thermophilic bacterium isolated R.A. Hutson and E. Falsen. 2004c. Streptococcus devriesei sp. nov., from from a hot spring. Int. J. Syst. Evol. Microbiol. 56: 2793–2797. equine teeth. Syst. Appl. Microbiol. 27: 146–150. Chou, Y.J., G.N. Elliott, E.K. James, K.Y. Lin, J.H. Chou, S.Y. Sheu, D.S. Collins, M.D., J. Routh, A. Saraswathy, P.A. Lawson, P. Schumann, C. Sheu, J.I. Sprent and W.M. Chen. 2007. Labrys neptuniae sp. nov., iso- Welinder-Olsson and E. Falsen. 2004d. Arsenicicoccus bolidensis gen. lated from root nodules of the aquatic legume Neptunia oleracea. Int. nov., sp. nov., a novel actinomycete isolated from contaminated lake J. Syst. Evol. Microbiol. 57: 577–581. sediment. Int. J. Syst. Evol. Microbiol. 54: 605–608. Choo, Y.J., K. Lee, J. Song and J.C. Cho. 2007. Puniceicoccus vermicola Collins, M.D., A. Wiernik, E. Falsen and P.A. Lawson. 2005. Atopococ- gen. nov., sp. nov., a novel marine bacterium, and description of cus tabaci gen. nov., sp. nov., a novel Gram-positive, catalase-negative, Puniceicoccaceae fam. nov., Puniceicoccales ord. nov., Opitutaceae fam. coccus-shaped bacterium isolated from tobacco. Int. J. Syst. Evol. nov., Opitutales ord. nov. and Opitutae classis nov. in the phylum ‘Ver- Microbiol. 55: 1693–1696. rucomicrobia’. Int. J. Syst. Evol. Microbiol. 57: 532–537. Conrads, G., D.M. Citron, R. Mutters, S. Jang and E.J.C. Goldstein. Christensen, H., M. Bisgaard, B. Aalbaek and J.E. Olsen. 2004. Reclassi- 2004. Fusobacterium canifelinum sp. nov., from the oral cavity of cats fication of Bisgaard taxon 33, with proposal of Volucribacter psittacicida and dogs. Syst. Appl. Microbiol. 27: 407–413. gen. nov., sp. nov. and Volucribacter amazonae sp. nov. as new members Conville, P.S., J.M. Brown, A.G. Steigerwalt, J.W. Lee, V.L. Anderson, J.T. of the Pasteurellaceae. Int. J. Syst. Evol. Microbiol. 54: 813–818. Fishbain, S.M. Holland and F.G. Witebsky. 2004. Nocardia kruczakiae Christensen, H., P. Kuhnert, M. Bisgaard, R. Mutters, F. Dziva and J.E. sp. nov., a pathogen in immunocompromised patients and a member Olsen. 2005. Emended description of porcine [Pasteurella] aerogenes, of the “N. nova complex”. J. Clin. Microbiol. 42: 5139–5145. [Pasteurella] mairii and [Actinobacillus] rossii. Int. J. Syst. Evol. Micro- Cook, A.E., M. Roes and P.R. Meyers. 2005. Actinomadura napierensis sp. biol. 55: 209–223. nov., isolated from soil in South Africa. Int. J. Syst. Evol. Microbiol. Chung, B.S., S.H. Ryu, M. Park, Y. Jeon, Y.R. Chung and C.O. Jeon. 55: 703–706. 2007. Hydrogenophaga caeni sp. nov., isolated from activated sludge. Cook, A.R., P.W. Riley, H. Murdoch, P.N. Evans and I.R. McDonald. Int. J. Syst. Evol. Microbiol. 57: 1126–1130. 2007. Howardella ureilytica gen. nov., sp. nov., a Gram-positive, coc- Cirne, D.G., O.D. Delgado, S. Marichamy and B. Mattiasson. 2006. coid-shaped bacterium from a sheep rumen. Int. J. Syst. Evol. Micro- Clostridium lundense sp. nov., a novel anaerobic lipolytic bacterium biol. 57: 2940–2945. isolated from bovine rumen. Int. J. Syst. Evol. Microbiol. 56: 625– Cooksey, R.C., J.H. de Waard, M.A. Yakrus, I. Rivera, M. Chopite, S.R. 628. Toney, G.P. Morlock and W.R. Butler. 2004. Mycobacterium cosmeticum Cladera, A.M., E. García-Valdés and J. Lalucat. 2006. Genotype versus sp. nov., a novel rapidly growing species isolated from a cosmetic infec- phenotype in the circumscription of bacterial species: the case of tion and from a nail salon. Int. J. Syst. Evol. Microbiol. 54: 2385–2391. Pseudomonas stutzeri and Pseudomonas chloritidismutans. Arch. Micro- Corsetti, A., L. Settanni, D. van Sinderen, G.E. Felis, F. Dellaglio and biol. 184: 353–361. M. Gobbetti. 2005. Lactobacillus rossii sp. nov., isolated from wheat Clark, L.L., J.J. Dajcs, C.H. McLean, J.G. Bartell and D.W. Stroman. sourdough. Int. J. Syst. Evol. Microbiol. 55: 35–40. 2006. Pseudomonas otitidis sp. nov., isolated from patients with otic Coton, M., J.M. Laplace, Y. Auffray and E. Coton. 2006. Polyphasic study infections. Int. J. Syst. Evol. Microbiol. 56: 709–714. of Zymomonas mobilis strains revealing the existence of a novel subspe- Clavel, T., R. Lippman, F. Gavini, J. Doré and M. Blaut. 2007. Clostrid- cies Z. mobilis subsp. francensis subsp. nov., isolated from French cider. ium saccharogumia sp. nov. and Lactonifactor longoviformis gen. nov., Int. J. Syst. Evol. Microbiol. 56: 121–125. sp. nov., two novel human faecal bacteria involved in the conversion Cotta, M.A., T.R. Whitehead, M.D. Collins and P.A. Lawson. 2004. Ato- of the dietary phytoestrogen secoisolariciresinol diglucoside. Syst. postipes suicloacale gen. nov., sp. nov., isolated from an underground Appl. Microbiol. 30: 16–26. swine manure storage pit. Anaerobe. 10: 191–195. Cleenwerck, I., N. Camu, K. Engelbeen, T. De Winter, K. Vandemeule- Cousin, S., O. Päuker and E. Stackebrandt. 2007. Flavobacterium aquidu- broecke, P. De Vos and L. De Vuyst. 2007. Acetobacter ghanensis sp. rense sp. nov. and Flavobacterium hercynium sp. nov., from a hard-water nov., a novel acetic acid bacterium isolated from traditional heap creek. Int. J. Syst. Evol. Microbiol. 57: 243–249. fermentations of Ghanaian cocoa beans. Int. J. Syst. Evol. Microbiol. Crapart, S., M.L. Fardeau, J.L. Cayol, P. Thomas, C. Sery, B. Ollivier 57: 1647–1652. and Y. Combet-Blanc. 2007. Exiguobacterium profundum sp. nov., a Cloud, J.L., J.J. Meyer, J.I. Pounder, K.C. Jost, Jr., A. Sweeney, K.C. Car- moderately thermophilic, lactic acid-producing bacterium isolated roll and G.L. Woods. 2006. Mycobacterium arupense sp. nov., a non- from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 57: chromogenic bacterium isolated from clinical specimens. Int. J. Syst. 287–292. Evol. Microbiol. 56: 1413–1418. Cravo-Laureau, C., R. Matheron, J.L. Cayol, C. Joulian and A. Hirschler- Coenye, T., D. Henry, D.P. Speert and P. Vandamme. 2004a. Burkhold- Réa. 2004a. Desulfatibacillum aliphaticivorans gen. nov., sp. nov., an eria phenoliruptrix sp. nov., to accommodate the 2,4,5-trichlorophe- n-alkane- and n-alkene-degrading, sulfate-reducing bacterium. Int. J. noxyacetic acid and halophenol-degrading strain AC1100. Syst. Appl. Syst. Evol. Microbiol. 54: 77–83. Microbiol. 27: 623–627. Cravo-Laureau, C., R. Matheron, C. Joulian, J.L. Cayol and A. Hirschler- Coenye, T., E. Vanlaere, E. Falsen and P. Vandamme. 2004b. Stenotroph- Réa. 2004b. Desulfatibacillum alkenivorans sp. nov., a novel n-alkene- omonas africana Drancourt et al. 1997 is a later synonym of Stenotroph- degrading, sulfate-reducing bacterium, and emended description omonas maltophilia (Hugh 1981) Palleroni and Bradbury 1993. Int. J. of the genus Desulfatibacillum. Int. J. Syst. Evol. Microbiol. 54: 1639– Syst. Evol. Microbiol. 54: 1235–1237. 1642. Coenye, T., E. Vanlaere, E. Samyn, E. Falsen, P. Larsson and P. Van- Cravo-Laureau, C., C. Labat, C. Joulian, R. Matheron and A. Hirschler- damme. 2005. Advenella incenata gen. nov., sp. nov., a novel member Réa. 2007. Desulfatiferula olefinivorans gen. nov., sp. nov., a long-chain of the Alcaligenaceae, isolated from various clinical samples. Int. J. n-alkene-degrading, sulfate-reducing bacterium. Int. J. Syst. Evol. Syst. Evol. Microbiol. 55: 251–256. Microbiol. 57: 2699–2702. APPENDIX 1 1375

Cui, H.L., D. Tohty, J. Feng, P.J. Zhou and S.J. Liu. 2006a. Natronorubrum isolated from raw chicken in a chicken-processing plant. Int. J. Syst. aibiense sp. nov., an extremely halophilic archaeon isolated from Aibi Evol. Microbiol. 55: 2149–2153. salt lake in Xin-Jiang, China, and emended description of the genus de Beer, H., C.J. Hugo, P.J. Jooste, M. Vancanneyt, T. Coenye and P. Natronorubrum. Int. J. Syst. Evol. Microbiol. 56: 1515–1517. Vandamme. 2006. Chryseobacterium piscium sp. nov., isolated from fish Cui, H.L., D. Tohty, P.J. Zhou and S.J. Liu. 2006b. Halorubrum lipolyticum of the South Atlantic Ocean off South Africa. Int. J. Syst. Evol. Micro- sp. nov. and Halorubrum aidingense sp. nov., isolated from two salt lakes biol. 56: 1317–1322. in Xin-Jiang, China. Int. J. Syst. Evol. Microbiol. 56: 1631–1634. de Boer, W., J.H. Leveau, G.A. Kowalchuk, P.J. Klein Gunnewiek, E.C. Cui, H.L., D. Tohty, P.J. Zhou and S.J. Liu. 2006c. Haloterrigena longa sp. Abeln, M.J. Figge, K. Sjollema, J.D. Janse and J.A. van Veen. 2004. nov. and Haloterrigena limicola sp. nov., extremely halophilic archaea Collimonas fungivorans gen. nov., sp. nov., a chitinolytic soil bacterium isolated from a salt lake. Int. J. Syst. Evol. Microbiol. 56: 1837–1840. with the ability to grow on living fungal hyphae. Int. J. Syst. Evol. Cui, H.L., D. Tohty, H.C. Liu, S.J. Liu, A. Oren and P.J. Zhou. 2007a. Microbiol. 54: 857–864. Natronorubrum sulfidifaciens sp. nov., an extremely haloalkaliphilic de Bok, F.A., H.J. Harmsen, C.M. Plugge, M.C. de Vries, A.D. Akker- archaeon isolated from Aiding salt lake in Xin-Jiang, China. Int. J. mans, W.M. de Vos and A.J. Stams. 2005. The first true obligately Syst. Evol. Microbiol. 57: 738–740. syntrophic propionate-oxidizing bacterium, Pelotomaculum schinkii Cui, H.L., Z.Y. Lin, Y. Dong, P.J. Zhou and S.J. Liu. 2007b. Halorubrum sp. nov., co-cultured with Methanospirillum hungatei, and emended litoreum sp. nov., an extremely halophilic archaeon from a solar salt- description of the genus Pelotomaculum. Int. J. Syst. Evol. Microbiol. ern. Int. J. Syst. Evol. Microbiol. 57: 2204–2206. 55: 1697–1703. Cui, Q., L. Wang, Y. Huang, Z. Liu and M. Goodfellow. 2005. Nocardia De Bruyne, K., U. Schillinger, L. Caroline, B. Boehringer, I. Cleen- jiangxiensis sp. nov. and Nocardia miyunensis sp. nov., isolated from werck, M. Vancanneyt, L. De Vuyst, C.M. Franz and P. Vandamme. acidic soils. Int. J. Syst. Evol. Microbiol. 55: 1921–1925. 2007. Leuconostoc holzapfelii sp. nov., isolated from Ethiopian coffee Cui, X., P. Schumann, E. Stackebrandt, R.M. Kroppenstedt, R. Pukall, fermentation and assessment of sequence analysis of housekeeping L. Xu, M. Rohde and C. Jiang. 2004. Myceligenerans xiligouense gen. genes for delineation of Leuconostoc species. Int. J. Syst. Evol. Micro- nov., sp. nov., a novel hyphae-forming member of the family Promi- biol. 57: 2952–2959. cromonosporaceae. Int. J. Syst. Evol. Microbiol. 54: 1287–1293. De Clerck, E., M. Rodriguez-Diaz, G. Forsyth, L. Lebbe, N.A. Logan and Cui, Y.S., W.T. Im, C.R. Yin, J.S. Lee, K.C. Lee and S.T. Lee. 2007a. Aero- P. De Vos. 2004a. Polyphasic characterization of Bacillus coagulans microbium panaciterrae sp. nov., isolated from soil of a ginseng field in strains, illustrating heterogeneity within this species, and emended South Korea. Int. J. Syst. Evol. Microbiol. 57: 687–691. description of the species. Syst. Appl. Microbiol. 27: 50–60. Cui, Y.S., W.T. Im, C.R. Yin, D.C. Yang and S.T. Lee. 2007b. Microlunatus De Clerck, E., M. Rodríguez-Díaz, T. Vanhoutte, J. Heyrman, N.A. ginsengisoli sp. nov., isolated from soil of a ginseng field. Int. J. Syst. Logan and P. De Vos. 2004b. Anoxybacillus contaminans sp. nov. and Evol. Microbiol. 57: 713–716. Bacillus gelatini sp. nov., isolated from contaminated gelatin batches. Cunha, S., I. Tiago, A.L. Pires, M.S. da Costa and A. Veríssimo. 2006. Int. J. Syst. Evol. Microbiol. 54: 941–946. Dokdonella fugitiva sp. nov., a Gammaproteobacterium isolated from pot- De Clercq, D., S. Van Trappen, I. Cleenwerck, A. Ceustermans, J. Swings, ting soil. Syst. Appl. Microbiol. 29: 191–196. J. Coosemans and J. Ryckeboer. 2006. Rhodanobacter spathiphylli sp. Dahle, H. and N.K. Birkeland. 2006. Thermovirga lienii gen. nov., sp. nov., nov., a gammaproteobacterium isolated from the roots of Spathip- a novel moderately thermophilic, anaerobic, amino-acid-degrading hyllum plants grown in a compost-amended potting mix. Int. J. Syst. bacterium isolated from a North Sea oil well. Int. J. Syst. Evol. Micro- Evol. Microbiol. 56: 1755–1759. biol. 56: 1539–1545. de Groot, A., V. Chapon, P. Servant, R. Christen, M.F. Saux, S. Sommer Dai, X., Y.N. Wang, B.J. Wang, S.J. Liu and Y.G. Zhou. 2005. Planomicro- and T. Heulin. 2005. Deinococcus deserti sp. nov., a gamma-radiation- bium chinense sp. nov., isolated from coastal sediment, and transfer of tolerant bacterium isolated from the Sahara Desert. Int. J. Syst. Evol. Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicro- Microbiol. 55: 2441–2446. bium as Planomicrobium psychrophilum comb. nov. and Planomicrobium Dedysh, S.N., Y.Y. Berestovskaya, L.V. Vasylieva, S.E. Belova, V.N. Khmele- alkanoclasticum comb. nov. Int. J. Syst. Evol. Microbiol. 55: 699–702. nina, N.E. Suzina, Y.A. Trotsenko, W. Liesack and G.A. Zavarzin. 2004. Dai, X., B.J. Wang, Q.X. Yang, N.Z. Jiao and S.J. Liu. 2006. Yangia paci- Methylocella tundrae sp. nov., a novel methanotrophic bacterium from fica gen. nov., sp. nov., a novel member of the Roseobacter clade from acidic tundra peatlands. Int. J. Syst. Evol. Microbiol. 54: 151–156. coastal sediment of the East China Sea. Int. J. Syst. Evol. Microbiol. Dedysh, S.N., S.E. Belova, P.L. Bodelier, K.V. Smirnova, V.N. Khmele- 56: 529–533. nina, A. Chidthaisong, Y.A. Trotsenko, W. Liesack and P.F. Dunfield. Daneshvar, M.I., D.G. Hollis, R.S. Weyant, J.G. Jordan, J.P. Macgregor, 2007. Methylocystis heyeri sp. nov., a novel type II methanotrophic bac- R.E. Morey, A.M. Whitney, D.J. Brenner, A.G. Steigerwalt, L.O. terium possessing ‘signature’ fatty acids of type I methanotrophs. Int. Helsel, P.M. Raney, J.B. Patel J.B., P.N. Levett and J.M. Brown. J. Syst. Evol. Microbiol. 57: 472–479. 2004. Identification of some charcoal-black-pigmented CDC fer- Delgado, O., J. Quillaguamán, S. Bakhtiar, B. Mattiasson, A. Gessesse mentative coryneform group 4 isolates as Rothia dentocariosa and and R. Hatti-Kaul. 2006. Nesterenkonia aethiopica sp. nov., an alka- some as Corynebacterium aurimucosum: proposal of Rothia dentocar- liphilic, moderate halophile isolated from an Ethiopian soda lake. iosa emend. Georg and Brown 1967, Corynebacterium aurimucosum Int. J. Syst. Evol. Microbiol. 56: 1229–1232. emend. Yassin et al. 2002, and Corynebacterium nigricans Shukla Dellaglio, F., S. Torriani and G.E. Felis. 2004. Reclassification of Lacto- et al. 2003 pro synon. Corynebacterium aurimucosum. J. Clin. Micro- bacillus cellobiosus Rogosa et al. 1953 as a later synonym of Lactobacillus biol. 42: 4189–4198. fermentum Beijerinck 1901. Int. J. Syst. Evol. Microbiol. 54: 809–812. Davidov, Y. and E. Jurkevitch. 2004. Diversity and evolution of Bdell- Dellaglio, F., I. Cleenwerck, G.E. Felis, K. Engelbeen, D. Janssens and ovibrio-and-like organisms (BALOs), reclassification of Bacteriovorax M. Marzotto. 2005a. Description of Gluconacetobacter swingsii sp. nov. starrii as Peredibacter starrii gen. nov., comb. nov., and description of and Gluconacetobacter rhaeticus sp. nov., isolated from Italian apple the Bacteriovorax–Peredibacter clade as Bacteriovoracaceae fam. nov. Int. fruit. Int. J. Syst. Evol. Microbiol. 55: 2365–2370. J. Syst. Evol. Microbiol. 54: 1439–1452. 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Pseudovibrio ascidiaceicola sp. nov., isolated from (The Proteobacteria), Part B (The Gammaproteobacteria), Springer, New ascidians (sea squirts). Int. J. Syst. Evol. Microbiol. 56: 343–347. York, p. 1. Funke, G., M. Pagano-Niederer, B. Sjöden and E. Falsen. 1998. Charac- Garrity, G.M., J.A. Bell and T. Lilburn. 2005iii. Order II. Acidithiobacillales teristics of Arthrobacter cumminsii, the most frequently encountered ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Man- Arthrobacter species in human clinical specimens. J. Clin. Microbiol. ual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacte- 36: 1539–1543. ria), Part B (The Gammaproteobacteria), Springer, New York, p. 60 Gallego, V., M.T. García and A. Ventosa. 2005a. Methylobacterium hispani- Garrity, G.M., J.A. Bell and T. Lilburn. 2005iv. Family I. Acidithiobacillaceae cum sp. nov. and Methylobacterium aquaticum sp. nov., isolated from fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Man- drinking water. Int. J. Syst. Evol. Microbiol. 55: 281–287. ual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacte- Gallego, V., M.T. García and A. Ventosa. 2005b. Methylobacterium varia- ria), Part B (The Gammaproteobacteria), Springer, New York, p. 60. bile sp. nov., a methylotrophic bacterium isolated from an aquatic Garrity, G.M., J.A. Bell and T. Lilburn. 2005v.: Family II. Thermithiobacillaceae environment. Int. J. Syst. Evol. Microbiol. 55: 1429–1433. fam. nov. In Brenner, Krieg, Staley and Garrity eds, Bergey’s Manual Gallego, V., M.T. García and A. Ventosa. 2005c. Methylobacterium isbiliense of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacteria), sp. nov., isolated from the drinking water system of Sevilla, Spain. Int. Part B (The Gammaproteobacteria), Springer, New York, p. 62. J. Syst. Evol. Microbiol. 55: 2333–2337. Garrity, G.M., J.A. Bell and T. Lilburn. 2005vi. Order IV. Cardiobacteriales Gallego, V., M.T. García and A. Ventosa. 2006a. Methylobacterium adhae- ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Man- sivum sp. nov., a methylotrophic bacterium isolated from drinking ual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacte- water. Int. J. Syst. Evol. Microbiol. 56: 339–342. ria), Part B (The Gammaproteobacteria), Springer, New York, p. 123. Gallego, V., M.T. García and A. Ventosa. 2006b. Chryseobacterium hispani- Garrity, G.M., J.A. Bell and T. Lilburn. 2005vii. Order V. Thiotrichales ord. cum sp. nov., isolated from the drinking water distribution system of nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Manual Sevilla, Spain. Int. J. Syst. Evol. Microbiol. 56: 1589–1592. of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacte- Gallego, V., M.T. García and A. Ventosa. 2006c. Pedobacter aquatilis sp. ria), Part B (The Gammaproteobacteria), Springer, New York, p. 131. nov., isolated from drinking water, and emended description of the Garrity, G.M., J.A. Bell and T. Lilburn. 2005viii. Family I. Thiotrichaceae fam. genus Pedobacter. Int. J. Syst. Evol. Microbiol. 56: 1853–1858. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Manual Gallego, V., C. Sánchez-Porro, M.T. García and A. Ventosa. 2006d. of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacteria), Roseomonas aquatica sp. nov., isolated from drinking water. Int. J. Syst. Part B (The Gammaproteobacteria), Springer, New York, p. 131. Evol. Microbiol. 56: 2291–2295. Garrity, G.M., J.A. Bell and T. Lilburn. 2005ix. Order VI. Legionellales ord. Gallego, V., C. Sánchez-Porro, M.T. García and A. Ventosa. 2006e. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Manual Massilia aurea sp. nov., isolated from drinking water. Int. J. Syst. Evol. of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacte- Microbiol. 56: 2449–2453. ria), Part B (The Gammaproteobacteria), Springer, New York, p. 210. Gao, H., A. Obraztova, N. Stewart, R. Popa, J.K. Fredrickson, J.M. Tiedje, Garrity, G.M., J.A. Bell and T. Lilburn. 2005x. Family II. Coxiellaceae fam. K.H. Nealson and J. Zhou. 2006. Shewanella loihica sp. nov., isolated nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Manual from iron-rich microbial mats in the Pacific Ocean. Int. J. Syst. Evol. of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacte- Microbiol. 56: 1911–1916. ria), Part B (The Gammaproteobacteria), Springer, New York, p. 237. Gao, J.L., S.L. Turner, F.L. Kan, E.T. Wang, Z.Y. Tan, Y.H. Qiu, J. Gu, Z. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xi. Order VIII. Oceanospirillales Terefework, J.P. Young, K. Lindström and W.X. Chen. 2004. Mesorhizo- ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Man- bium septentrionale sp. nov. and Mesorhizobium temperatum sp. nov., iso- ual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacte- lated from Astragalus adsurgens growing in the northern regions of ria), Part B (The Gammaproteobacteria), Springer, New York, p. 270. China. Int. J. Syst. Evol. Microbiol. 54: 2003–2012. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xii. Family I. Oceanospirillaceae García, M.T., E. Mellado, J.C. Ostos and A. Ventosa. 2004. Halomonas fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Man- organivorans sp. nov., a moderate halophile able to degrade aromatic ual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacte- compounds. Int. J. Syst. Evol. Microbiol. 54: 1723–1728. ria), Part B (The Gammaproteobacteria), Springer, New York, p. 271. García, M.T., V. Gallego, A. Ventosa and E. Mellado. 2005. Thalassoba- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xiii. Family III. Hahellaceae fam. cillus devorans gen. nov., sp. nov., a moderately halophilic, phenol- nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Manual degrading, Gram-positive bacterium. Int. J. Syst. Evol. Microbiol. 55: of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacteria), 1789–1795. Part B (The Gammaproteobacteria), Springer, New York, p. 299. García-Fraile, P., R. Rivas, A. Willems, A. Peix, M. Martens, E. Martínez- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xiv. Order XIV. Pasteurellales Molina, P.F. Mateos and E. Velázquez. 2007. Rhizobium cellulosilyticum ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Man- sp. nov., isolated from sawdust of Populus alba. Int. J. Syst. Evol. Micro- ual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacte- biol. 57: 844–848. ria), Part B (The Gammaproteobacteria), Springer, New York, p. 850. APPENDIX 1 1379

Garrity, G.M., J.A. Bell and T. Lilburn. 2005xv. Class I. Alphaproteobacteria Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxviii. Order III. Methy- class. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s lophilales ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Pro- Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 teobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- Springer, New York, p. 1. teobacteria), Springer, New York, p. 770. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xvi. Order III. Rhodobacter- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxix. Family I. Methylo- ales ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s philaceae fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Pro- Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 teobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- Springer, New York, p. 161. teobacteria), Springer, New York, p. 770. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xvii. Family I. Rhodobacte- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxx. Order V. Nitrosomonadales raceae fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Pro- (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- teobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), teobacteria), Springer, New York, p. 161. Springer, New York, p. 863. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xviii. Family VI. Beijer- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxxi. Family I. inckiaceae fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), Nitrosomonadaceae fam. nov. In Brenner, Krieg, Staley and Garrity Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (Editors), Bergey’s Manual of Systematic Bacteriology, 2nd Edition, (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- Volume 2 (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and teobacteria), Springer, New York, p. 422. Epsilonproteobacteria), Springer, New York, p. 864. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xix. Family VII. Bradyrhizo- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxxii. Order VI. Rhodocyclales biaceae fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Pro- (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- teobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), teobacteria), Springer, New York, p. 438. Springer, New York, p. 887. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xx. Family IX. Methylobac- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxxiii. Family I. Rhodocycla- teriaceae fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), ceae fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Pro- (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- teobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), teobacteria), Springer, New York, p. 567. Springer, New York, p. 887. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxi. Family X. Rhodobiaceae Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxxiv. Family III. Nitro- fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s spinaceae fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Pro- Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 teobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- Springer, New York, p. 571. teobacteria), Springer, New York, p. 999. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxii. Class II. Betaproteobacte- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxxv. Family II. Geobacteraceae ria class. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Pro- Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Pro- teobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), teobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York, p. 575. Springer, New York, p. 1017. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxiii. Order I. Burkholderiales Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxxvi. Order VII. Bdellovi- ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s brionales ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Pro- Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 teobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- Springer, New York, p. 575. teobacteria), Springer, New York, p. 1040. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxiv. Family I. Burkhold- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxxvii. Family I. Bdellovi- eriaceae fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), brionaceae fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- teobacteria), Springer, New York, p. 575. teobacteria), Springer, New York, pp. 1040–1041. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxv. Family II. Oxalobacte- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxxviii. Class V. Epsilonpro- raceae fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), teobacteria class. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- teobacteria), Springer, New York, p. 623. teobacteria), Springer, New York, p. 1145. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxvi. Order II. Hydrogeno- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxxix. Order I. Campy- philales ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), lobacterales ord. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- teobacteria), Springer, New York, p. 763. teobacteria), Springer, New York, p. 1145. Garrity, G.M., J.A. Bell and T. Lilburn. 2005xxvii. Family I. Hydrogeno- Garrity, G.M., J.A. Bell and T. Lilburn. 2005xl. Family II. Helicobacteraceae philaceae fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), fam. nov. In Brenner, Krieg, Staley and Garrity (Editors), Bergey’s Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 Manual of Systematic Bacteriology, 2nd Edition, Volume 2 (The Pro- (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonpro- teobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), teobacteria), Springer, New York, p. 763. Springer, New York, p. 1168. 1380 APPENDIX 1

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In Brenner, Krieg, Staley and Gar- Three new species of brevibacteria, Brevibacterium antiquum sp. nov., rity (Editors), Bergey’s Manual of Systematic Bacteriology, 2nd Edi- Brevibacterium aurantiacum sp. nov., and Brevibacterium permense sp. tion, Volume 2 (The Proteobacteria), Part B (The Gammaproteobacteria), nov. Mikrobiologiia 73: 218–225 (in Russian); English translation: Springer, New York, p. 295. Microbiology. 73: 176–183. Gomez-Gil, B., F.L. Thompson, C.C. Thompson, A. García-Gasca, A. Geider, K., G. Auling, Z. Du, V. Jakovljevic, S. Jock and B. Völksch. 2006. Roque and J. Swings. 2004. Vibrio hispanicus sp. nov., isolated from Erwinia tasmaniensis sp. nov., a non-phytopathogenic bacterium from Artemia sp. and sea water in Spain. Int. J. Syst. Evol. Microbiol. 54: apple and pear trees. Int. J. Syst. Evol. Microbiol. 56: 2937–2943. 261–265. Gelsomino, R., M. Vancanneyt and J. Swings. 2004. Reclassification of Gomila, M., B. Bowien, E. Falsen, E.R. Moore and J. Lalucat. 2007. 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Microbiol. 57: 1086– in the phylum Chloroflexi (emended description). Int. J. Syst. Evol. 1088. Microbiol. 54: 2049–2051. Hosoya, S. and A. Yokota. 2007b. Flammeovirga kamogawensis sp. nov., Huys, G., M. Cnockaert and J. Swings. 2005. Aeromonas culicicola Pidiyar isolated from coastal seawater in Japan. Int. J. Syst. Evol. Microbiol. et al. 2002 is a later subjective synonym of Aeromonas veronii Hickman- 57: 1327–1330. Brenner et al. 1987. Syst. Appl. Microbiol. 28: 604–609. Hosoya, S. and A. Yokota. 2007c. Pseudovibrio japonicus sp. nov., isolated Huys, G., M. Vancanneyt, K. D’Haene, E. Falsen, G. Wauters and P. from coastal seawater in Japan. Int. J. Syst. Evol. Microbiol. 57: 1952– Vandamme. 2007. Alloscardovia omnicolens gen. nov., sp. nov., from 1955. human clinical samples. Int. J. Syst. Evol. Microbiol. 57: 1442–1446. Hosoya, S. and A. Yokota. 2007d. Loktanella atrilutea sp. nov., isolated Hwang, C.Y. and B.C. Cho. 2006. Flectobacillus lacus sp. nov., isolated from seawater in Japan. Int. J. Syst. Evol. Microbiol. 57: 1966–1969. from a highly eutrophic pond in Korea. Int. J. Syst. Evol. Microbiol. Hosoya, S., V. Arunpairojana, C. Suwannachart, A. Kanjana-Opas and A. 56: 1197–1201. Yokota. 2006. Aureispira marina gen. nov., sp. nov., a gliding, arachi- Hwang, C.Y., D.H. Choi and B.C. Cho. 2006. Pedobacter roseus sp. nov., donic acid-containing bacterium isolated from the southern coast- isolated from a hypertrophic pond, and emended description of the line of Thailand. Int. J. Syst. Evol. Microbiol. 56: 2931–2935. genus Pedobacter. Int. J. Syst. Evol. Microbiol. 56: 1831–1836. Hosoya, S., V. Arunpairojana, C. Suwannachart, A. Kanjana-Opas and Iida, K., Y. Ueda, Y. Kawamura, T. Ezaki, A. Takade, S. Yoshida and K. A. Yokota. 2007. Aureispira maritima sp. nov., isolated from marine Amako. 2005. Paenibacillus motobuensis sp. nov., isolated from a com- barnacle debris. Int. J. Syst. Evol. 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Im, W.T., H.S. Bae, A. Yokota and S.T. Lee. 2004a. Herbaspirillum chlo- sp. nov., a novel filamentous organism isolated from brown alga Fucus rophenolicum sp. nov., a 4-chlorophenol-degrading bacterium. Int. J. evanescens. Syst. Appl. Microbiol. 27: 301–307. Syst. Evol. Microbiol. 54: 851–855. Ivanova, E.P., R. Christen, Y.V. Alexeeva, N.V. Zhukova, N.M. Gorsh- Im, W.T., S.T. Lee and A. Yokota. 2004b. Rhodanobacter fulvus sp. nov., kova, A.M. Lysenko, V.V. Mikhailov and D.V. Nicolau. 2004c. Brevibac- a α-galactosidase-producing gammaproteobacterium. J. Gen. Appl. terium celere sp. nov., isolated from degraded thallus of a brown alga. Microbiol. 50: 143–147. Int. J. Syst. Evol. Microbiol. 54: 2107–2111. Im, W.T., A. Yokota, M.K. Kim and S.T. Lee. 2004c. Kaistia adipata gen. Ivanova, E.P., S. Flavier and R. Christen. 2004d. Phylogenetic rela- nov., sp. nov., a novel α-proteobacterium. J. Gen. Appl. 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Kamagata and pacifica sp. nov., a polyunsaturated fatty acid-producing bacterium Y. Sekiguchi. 2007. Pelotomaculum propionicicum sp. nov., an anaerobic, isolated from sea water. Int. J. Syst. Evol. Microbiol. 54: 1083–1087. mesophilic, obligately syntrophic, propionate-oxidizing bacterium. Ivanova, E.P., N.M. Gorshkova, T. Sawabe, N.V. Zhukova, K. Hayashi, Int. J. Syst. Evol. Microbiol. 57: 1487–1492. V.V. Kurilenko, Y. Alexeeva, V. Buljan, D.V. Nicolau, V.V. Mikhailov Imhoff, J.F. 2005. Order I. Chromatiales ord. nov. In Brenner, Krieg, and R. Christen. 2004f. Sulfitobacter delicatus sp. nov. and Sulfitobacter Staley and Garrity (Editors), Bergey’s Manual of Systematic Bacteri- dubius sp. nov., respectively from a starfish (Stellaster equestris) and sea ology, 2nd Edition, Volume 2 (The Proteobacteria), Part B (The Gam- grass (Zostera marina). Int. J. Syst. Evol. Microbiol. 54: 475–480. maproteobacteria), Springer, New York, pp. 1–3. Ivanova, E.P., N.M. Gorshkova, N.V. Zhukova, A.M. Lysenko, E.A. Inagaki, F., K. Takai, K.H. Nealson and K. Horikoshi. 2004. Sulfurovum Zelepuga, N.G. Prokof’eva, V.V. Mikhailov, D.V. Nicolau and R. lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoau- Christen. 2004g. Characterization of Pseudoalteromonas distincta-like totroph within the ε-Proteobacteria isolated from Okinawa Trough sea-water isolates and description of Pseudoalteromonas aliena sp. nov. hydrothermal sediments. Int. J. Syst. Evol. Microbiol. 54: 1477–1482. Int. J. Syst. Evol. Microbiol. 54: 1431–1437. Inglis, G.D., B.M. Hoar, D.P. Whiteside and D.W. Morck. 2007. Campy- Ivanova, E.P., O.I. Nedashkovskaya, T. Sawabe, N.V. Zhukova, G.M. Frol- lobacter canadensis sp. nov., from captive whooping cranes in Canada. ova, D.V. Nicolau, V.V. Mikhailov and J.P. Bowman. 2004h. Shewanella Int. J. Syst. Evol. Microbiol. 57: 2636–2644. affinis sp. nov., isolated from marine invertebrates. Int. J. Syst. Evol. Irlinger, F., F. Bimet, J. Delettre, M. Lefèvre and P.A. Grimont. 2005. Microbiol. 54: 1089–1093. Arthrobacter bergerei sp. nov. and Arthrobacter arilaitensis sp. nov., novel Ivanova, E.P., J.P. Bowman, A.M. Lysenko, N.V. Zhukova, N.M. Gorsh- coryneform species isolated from the surfaces of cheeses. Int. J. Syst. kova, T.A. Kuznetsova, N.I. Kalinovskaya, L.S. Shevchenko and V.V. Evol. Microbiol. 55: 457–462. Mikhailov. 2005a. Erythrobacter vulgaris sp. nov., a novel organism Ishikawa, M., K. Nakajima, Y. Itamiya, S. Furukawa, Y. Yamamoto and isolated from the marine invertebrates. Syst. Appl. Microbiol. 28: K. Yamasato. 2005. Halolactibacillus halophilus gen. nov., sp. nov. and 123–130. Halolactibacillus miurensis sp. nov., halophilic and alkaliphilic marine Ivanova, E.P., J.P. Bowman, A.M. Lysenko, N.V. Zhukova, N.M. Gorsh- lactic acid bacteria constituting a phylogenetic lineage in Bacillus kova, A.F. Sergeev and V.V. Mikhailov. 2005b. Alteromonas addita sp. rRNA group 1. Int. J. Syst. Evol. Microbiol. 55: 2427–2439. nov. Int. J. Syst. Evol. Microbiol. 55: 1065–1068. Ishikawa, T. and A. Yokota. 2006. Reclassification of Arthrobacter duo- Ivanova, E.P., O.M. Onyshchenko, R. Christen, A.M. Lysenko, N.V. Zhu- decadis Lochhead 1958 as Tetrasphaera duodecadis comb. nov. and kova, L.S. Shevchenko and E.A. Kiprianova. 2005c. Marinomonas pon- emended description of the genus Tetrasphaera. Int. J. Syst. Evol. tica sp. nov., isolated from the Black Sea. Int. J. Syst. Evol. Microbiol. Microbiol. 56: 1369–1373. 55: 275–279. Islam, M.S., H. Kawasaki, Y. Nakagawa, T. Hattori and T. Seki. 2007. Ivanova, E.P., O.M. Onyshchenko, R. Christen, N.V. Zhukova, A.M. Labrys okinawensis sp. nov. and Labrys miyagiensis sp. nov., budding Lysenko, L.S. Shevchenko, V. Buljan, B. Hambly and E.A. Kiprianova. bacteria isolated from rhizosphere habitats in Japan, and emended 2005d. Oceanimonas smirnovii sp. nov., a novel organism isolated from descriptions of the genus Labrys and Labrys monachus. Int. J. Syst. the Black Sea. Syst. Appl. Microbiol. 28: 131–136. Evol. Microbiol. 57: 552–557. Ivanova, E.P., N.V. Zhukova, A.M. Lysenko, N.M. Gorshkova, A.F. Ser- Ito, T., K. Sugita, I. Yumoto, Y. Nodasaka and S. Okabe. 2005. Thiovirga geev, V.V. Mikhailov and J.P. Bowman. 2005e. Loktanella agnita sp. sulfuroxydans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxi- nov. and Loktanella rosea sp. nov., from the north-west Pacific Ocean. dizing bacterium isolated from a microaerobic waste-water biofilm. Int. J. Syst. Evol. Microbiol. 55: 2203–2207. Int. J. Syst. Evol. Microbiol. 55: 1059–1064. Ivanova, E.P., J.P. Bowman, R. Christen, N.V. Zhukova, A.M. Lysenko, Itoh, T., T. Yamaguchi, P. Zhou and T. Takashina. 2005. Natronolimnobius N.M. Gorshkova, N. Mitik-Dineva, A.F. Sergeev and V.V. Mikhailov. baerhuensis gen. nov., sp. nov. and Natronolimnobius innermongolicus sp. 2006a. Salegentibacter flavus sp. nov. Int. J. Syst. Evol. Microbiol. 56: nov., novel haloalkaliphilic archaea isolated from soda lakes in Inner 583–586. Mongolia, China. Extremophiles. 9: 111–116. Ivanova, E.P., J.P. Wright, A.M. Lysenko, N.V. Zhukova, Y.V. Alexeeva, Itoh, T., N. Yoshikawa and T. Takashina. 2007. Thermogymnomonas V. Buljan, N.I. Kalinovskaya, D.V. Nicolau, R. Christen and V.V. acidicola gen. nov., sp. nov., a novel thermoacidophilic, cell wall-less Mikhailov. 2006b. Characterization of unusual alkaliphilic Gram- archaeon in the order Thermoplasmatales, isolated from a solfataric positive bacteria isolated from degraded brown alga thalluses. Mik- soil in Hakone, Japan. Int. J. Syst. Evol. Microbiol. 57: 2557–2561. robiol. Z. 68: 10–20. Ivanova, E.P., Y.V. Alexeeva, S. Flavier, J.P. Wright, N.V. Zhukova, N.M. Jakobsen, T.F., K.U. Kjeldsen and K. Ingvorsen. 2006. Desulfohalobium Gorshkova, V.V. Mikhailov, D.V. Nicolau and R. Christen. 2004a. For- utahense sp. nov., a moderately halophilic, sulfate-reducing bacte- mosa algae gen. nov., sp. nov., a novel member of the family Flavobac- rium isolated from Great Salt Lake. Int. J. Syst. Evol. Microbiol. 56: teriaceae. Int. J. Syst. Evol. Microbiol. 54: 705–711. 2063–2069. Ivanova, E.P., Y.A. Alexeeva, N.V. Zhukova, N.M. Gorshkova, V. Buljan, Jean, W.D., J.S. Chen, Y.T. Lin and W.Y. Shieh. 2006a. Bowmanella deni- D.V. Nicolau, V.V. Mikhailov and R. Christen. 2004b. Bacillus algicola trificans gen. nov., sp. nov., a denitrifying bacterium isolated from APPENDIX 1 1385

seawater from An-Ping Harbour, Taiwan. Int. J. Syst. Evol. Microbiol. isolated from clinical material and phenol-contaminated soil. Int. J. 56: 2463–2467. Syst. Evol. Microbiol. 54: 407–411. Jean, W.D., W.Y. Shieh and H.H. Chiu. 2006b. Pseudidiomarina taiwan- Jones, B.E., W.D. Grant, A.W. Duckworth, P. Schumann, N. Weiss and ensis gen. nov., sp. nov., a marine bacterium isolated from shallow E. Stackebrandt. 2005. Cellulomonas bogoriensis sp. nov., an alkaliphilic coastal water of An-Ping Harbour, Taiwan, and emended description cellulomonad. Int. J. Syst. Evol. Microbiol. 55: 1711–1714. of the family Idiomarinaceae. Int. J. Syst. Evol. Microbiol. 56: 899–905. Jones, J.B., G.H. Lacy, H. Bouzar, R.E. Stall and N.W. Schaad. 2004. Jean, W.D., W.Y. Shieh and T.Y. Liu. 2006c. Thalassomonas agarivorans Reclassification of the xanthomonads associated with bacterial spot sp. nov., a marine agarolytic bacterium isolated from shallow coastal disease of tomato and pepper. Syst. Appl. Microbiol. 27: 755–762. water of An-Ping Harbour, Taiwan, and emended description of the Jordan, E.M., F.L. Thompson, X.H. Zhang, Y. Li, M. Vancanneyt, R.M. Krop- genus Thalassomonas. Int. J. Syst. Evol. Microbiol. 56: 1245–1250. penstedt, F.G. Priest and B. Austin. 2007. Sneathiella chinensis gen. nov., Jeon, C.O., W. Park, W.C. Ghiorse and E.L. Madsen. 2004. Polaromonas sp. nov., a novel marine alphaproteobacterium isolated from coastal naphthalenivorans sp. nov., a naphthalene-degrading bacterium from sediment in Qingdao, China. Int. J. Syst. Evol. Microbiol. 57: 114–121. naphthalene-contaminated sediment. Int. J. Syst. Evol. Microbiol. 54: Jourand, P., E. Giraud, G. Bena, A. Sy, A. Willems, M. Gillis, B. Dreyfus and 93–97. P. de Lajudie. 2004. Methylobacterium nodulans sp. nov., for a group of Jeon, C.O., J.M. Lim, J.C. Lee, G.S. Lee, J.M. Lee, L.H. Xu, C.L. Jiang aerobic, facultatively methylotrophic, legume root-nodule-forming and and C.J. Kim. 2005a. Lentibacillus salarius sp. nov., isolated from saline nitrogen-fixing bacteria. Int. J. Syst. Evol. Microbiol. 54: 2269–2273. sediment in China, and emended description of the genus Lentibacil- Judicial Commission of the International Committee on Systematics of lus. Int. J. Syst. Evol. Microbiol. 55: 1339–1343. Prokaryotes. 2005a. Rejection of the genus name Pelczaria with the Jeon, C.O., J.M. Lim, J.M. Lee, L.H. Xu, C.L. Jiang and C.J. Kim. 2005b. species Pelczaria aurantia Poston 1994. Opinion 78. Int. J. Syst. Evol. Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus Microbiol. 55: 515. haloalkaliphilus gen. nov., comb. nov. and the description of Alkaliba- Judicial Commission of the International Committee on Systemat- cillus salilacus sp. nov., a novel halophilic bacterium isolated from a ics of Prokaryotes. 2005b. The type species of the genus Salmonella salt lake in China. Int. J. Syst. Evol. Microbiol. 55: 1891–1896. Lignieres 1900 is Salmonella enterica (ex Kauffmann and Edwards Jeon, C.O., J.M. Lim, D.J. Park and C.J. Kim. 2005c. Salinimonas chun- 1952) Le Minor and Popoff 1987, with the type strain LT2T, and con- gwhensis gen. nov., sp. nov., a moderately halophilic bacterium from a servation of the epithet enterica in Salmonella enterica over all earlier solar saltern in Korea. Int. J. Syst. Evol. Microbiol. 55: 239–243. epithets that may be applied to this species. Opinion 80. Int. J. Syst. Jeon, C.O., J.M. Lim, J.R. Lee, G.S. Lee, D.J. Park, J.C. Lee, H.W. Oh Evol. Microbiol. 55: 519–520. and C.J. Kim. 2007. Halomonas kribbensis sp. nov., a novel moderately Jumas-Bilak, E., J.P. Carlier, H. Jean-Pierre, C. Teyssier, B. Gay, J. Cam- halophilic bacterium isolated from a solar saltern in Korea. Int. J. pos and H. Marchandin. 2004. Veillonella montpellierensis sp. nov., a Syst. Evol. Microbiol. 57: 2194–2198. novel, anaerobic, Gram-negative coccus isolated from human clinical Jeong, H., H. Yi, Y. Sekiguchi, M. Muramatsu, Y. Kamagata and J. Chun. samples. Int. J. Syst. Evol. Microbiol. 54: 1311–1316. 2004. Clostridium jejuense sp. nov., isolated from soil. Int. J. Syst. Evol. Jumas-Bilak, E., H. Jean-Pierre, J.P. Carlier, C. Teyssier, K. Bernard, B. Microbiol. 54: 1465–1468. Gay, J. Campos, F. Morio and H. Marchandin. 2005. Dialister micraero- Jeong, H., Y.W. Lim, H. Yi, Y. Sekiguchi, Y. Kamagata and J. Chun. 2007. philus sp. nov. and Dialister propionicifaciens sp. nov., isolated from Anaerosporobacter mobilis gen. nov., sp. nov., isolated from forest soil. human clinical samples. Int. J. Syst. Evol. Microbiol. 55: 2471–2478. Int. J. Syst. Evol. Microbiol. 57: 1784–1787. Jumas-Bilak, E., J.P. Carlier, H. Jean-Pierre, D. Citron, K. Bernard, A. Damay, Jiang, B., S.N. Parshina, W. van Doesburg, B.P. Lomans and A.J. Stams. B. Gay, C. Teyssier, J. Campos and H. Marchandin. 2007a. Jonquetella 2005. Methanomethylovorans thermophila sp. nov., a thermophilic, anthropi gen. nov., sp. nov., the first member of the candidate phylum ‘Syn- methylotrophic methanogen from an anaerobic reactor fed with ergistetes’ isolated from man. Int. J. Syst. Evol. Microbiol. 57: 2743–2748. methanol. Int. J. Syst. Evol. Microbiol. 55: 2465–2470. Jumas-Bilak, E., J.P. Carlier, H. Jean-Pierre, F. Mory, C. Teyssier, B. Gay, Jiang, C.Y., X. Dai, B.J. Wang, Y.G. Zhou and S.J. Liu. 2006. Roseomo- J. Campos and H. Marchandin. 2007b. Acidaminococcus intestini sp. nas lacus sp. nov., isolated from freshwater lake sediment. Int. J. Syst. nov., isolated from human clinical samples. Int. J. Syst. Evol. Micro- Evol. Microbiol. 56: 25–28. biol. 57: 2314–2319. Jiang, Y., S.K. Tang, J. Wiese, L.H. Xu, J.F. Imhoff and C.L. Jiang. 2007. Jung, S.Y., S.J. Kang, M.H. Lee, S.Y. Lee, T.K. Oh and J.H. Yoon. 2005a. Streptomyces hainanensis sp. nov., a novel member of the genus Strepto- Gaetbulibacter saemankumensis gen. nov., sp. nov., a novel member myces. Int. J. Syst. Evol. Microbiol. 57: 2694–2698. of the family Flavobacteriaceae isolated from a tidal flat sediment in Jimenez, M.S., M.I. Campos-Herrero, D. García, M. Luquin, L. Herrera Korea. Int. J. Syst. Evol. Microbiol. 55: 1845–1849. and M.J. García. 2004. Mycobacterium canariasense sp. nov. Int. J. Syst. Jung, S.Y., M.H. Lee, T.K. Oh, Y.H. Park and J.H. Yoon. 2005b. Psy- Evol. Microbiol. 54: 1729–1734. chrobacter cibarius sp. nov., isolated from jeotgal, a traditional Korean Jin, L., K.K. Kim, W.T. Im, H.C. Yang and S.T. Lee. 2007. Aspromo- fermented seafood. Int. J. Syst. Evol. Microbiol. 55: 577–582. nas composti gen. nov., sp. nov., a novel member of the family Xan- Jung, S.Y., H.S. Kim, J.J. Song, S.G. Lee, T.K. Oh and J.H. Yoon. 2006a. thomonadaceae. Int. J. Syst. Evol. Microbiol. 57: 1876–1880. Kribbia dieselivorans gen. nov., sp. nov., a novel member of the family Johansen, J.E., S.J. Binnerup, N. Kroer and L. Mølbak. 2005. Luteibacter Intrasporangiaceae. Int. J. Syst. Evol. Microbiol. 56: 2427–2432. rhizovicinus gen. nov., sp. nov., a yellow-pigmented gammaproteobac- Jung, S.Y., T.K. Oh and J.H. Yoon. 2006b. Colwellia aestuarii sp. nov., iso- terium isolated from the rhizosphere of barley (Hordeum vulgare L.). lated from a tidal flat sediment in Korea. Int. J. Syst. Evol. Microbiol. Int. J. Syst. Evol. Microbiol. 55: 2285–2291. 56: 33–37. Johnson, D.B., B. Stallwood, S. Kimura and K.B. Hallberg. 2006. Iso- Jung, S.Y., T.K. Oh and J.H. Yoon. 2006c. Tenacibaculum aestuarii sp. nov., lation and characterization of Acidicaldus organivorus, gen. nov., sp. isolated from a tidal flat sediment in Korea. Int. J. Syst. Evol. Micro- nov.: a novel sulfur-oxidizing, ferric iron-reducing thermo-acido- biol. 56: 1577–1581. philic heterotrophic Proteobacterium. Arch. 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Jung, S.Y., S.Y. Lee, T.K. Oh and J.H. Yoon. 2007c. Agromyces allii sp. nov., and the first isolation report of Nocardia vinacea from humans. Jpn. J. isolated from the rhizosphere of Allium victorialis var. platyphyllum. Med. Mycol. 46: 21–26. Int. J. Syst. Evol. Microbiol. 57: 588–593. Kageyama, A., K. Yazawa, H. Taniguchi, H. Chibana, K. Nishimura, R.M. Jung, S.Y., M.H. Lee, T.K. Oh and J.H. Yoon. 2007d. Herbaspirillum Kroppenstedt and Y. Mikami. 2005c. Nocardia concava sp. nov., isolated rhizosphaerae sp. nov., isolated from rhizosphere soil of Allium victoria- from Japanese patients. Int. J. Syst. Evol. Microbiol. 55: 2081–2083. lis var. platyphyllum. Int. J. Syst. Evol. Microbiol. 57: 2284–2288. Kageyama, A., S. Iida, K. Yazawa, T. Kudo, S. Suzuki, T. Koga, H. Saito, Jurado, V., I. Groth, J.M. González, L. Laiz and C. Saiz-Jimenez. 2005a. H. Inagawa, A. Wada, R.M. Kroppenstedt and Y. Mikami. 2006a. Gor- Agromyces salentinus sp. nov. and Agromyces neolithicus sp. nov. Int. 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Microbiol. 54: Oryzihumus leptocrescens gen. nov., sp. nov. Int. J. Syst. Evol. Microbiol. 381–383. 55: 2555–2559. Kämpfer, P., H.J. Busse, R. Rosselló-Mora, E. Kjellin and E. Falsen. Kageyama, A., K. Yazawa, K. Nishimura and Y. Mikami. 2005b. Nocar- 2004b. Rhodovarius lipocyclicus gen. nov. sp. nov., a new genus of the dia anaemiae sp. nov. isolated from an immunocompromised patient α-1 subclass of the Proteobacteria. Syst. Appl. Microbiol. 27: 511–516. APPENDIX 1 1387

Kämpfer, P., R.M. Kroppenstedt and I. Grün-Wollny. 2005a. Nonomuraea Kämpfer, P., H.C. Scholz, B. Huber, E. Falsen and H.J. Busse. 2007e. kuesteri sp. nov. Int. J. Syst. Evol. Microbiol. 55: 847–851. Ochrobactrum haematophilum sp. nov. and Ochrobactrum pseudogrignon- Kämpfer, P., S. Ruppel and R. Remus. 2005b. Enterobacter radicincitans ense sp. nov., isolated from human clinical specimens. Int. J. Syst. sp. nov., a plant growth promoting species of the family Enterobacteri- Evol. Microbiol. 57: 2513–2518. aceae. Syst. Appl. Microbiol. 28: 213–221. Kämpfer, P., H. Scholz, B. Huber, K. Thummes, H.J. Busse, E.W. Maas Kämpfer, P., R. Schulze, U. Jäckel, K.A. Malik, R. Amann and S. Spring. and E. Falsen. 2007f. Description of Pseudochrobactrum kiredjianiae sp. 2005c. Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov. Int. J. Syst. Evol. Microbiol. 57: 755–760. nov., isolated from activated sludge. Int. J. Syst. Evol. Microbiol. 55: Kang, M.S., W.T. Im, H.M. Jung, M.K. Kim, M. Goodfellow, K.K. Kim, 341–344. H.C. Yang, D.S. An and S.T. Lee. 2007. Cellulomonas composti sp. nov., Kämpfer, P., V. Avesani, M. Janssens, J. Charlier, T. De Baere and M. a cellulolytic bacterium isolated from cattle farm compost. Int. J. Syst. Vaneechoutte. 2006a. Description of Wautersiella falsenii gen. nov., Evol. Microbiol. 57: 1256–1260. sp. nov., to accommodate clinical isolates phenotypically resembling Kang, Y.S., J. Kim, H.D. Shin, Y.D. Nam, J.W. Bae, C.O. Jeon and W. Park. members of the genera Chryseobacterium and Empedobacter. Int. J. Syst. 2007. Methylobacterium platani sp. nov., isolated from a leaf of the tree Evol. Microbiol. 56: 2323–2329. Platanus orientalis. Int. J. Syst. Evol. Microbiol. 57: 2849–2853. Kämpfer, P., H.J. Busse and E. Falsen. 2006b. Herminiimonas aquatilis Kanso, S. and B.K. Patel. 2004. Phenylobacterium lituiforme sp. nov., a sp. nov., a new species from drinking water. Syst. Appl. Microbiol. moderately thermophilic bacterium from a subsurface aquifer, and 29: 287–291. emended description of the genus Phenylobacterium. Int. J. Syst. Evol. Kämpfer, P., H.J. Busse and E. Falsen. 2006c. Polaromonas aquatica sp. Microbiol. 54: 2141–2146. nov., isolated from tap water. Int. J. Syst. Evol. Microbiol. 56: 605– Karavaiko, G.I., T.I. Bogdanova, T.P. Tourova, T.F. Kondrat’eva, I.A. 608. Tsaplina, M.A. Egorova, E.N. Krasil’nikova and L.M. Zakharchuk. Kämpfer, P., K. Denger, A.M. Cook, S.T. Lee, U. Jäckel, E.B. Denner and 2005. Reclassification of ‘Sulfobacillus thermosulfidooxidans subsp. ther- H.J. Busse. 2006d. Castellaniella gen. nov., to accommodate the phylo- motolerans’ strain K1 as Alicyclobacillus tolerans sp. nov. and Sulfobacillus genetic lineage of Alcaligenes defragrans, and proposal of Castellaniella disulfidooxidans Dufresne et al. 1996 as Alicyclobacillus disulfidooxidans defragrans gen. nov., comb. nov. and Castellaniella denitrificans sp. nov. comb. nov., and emended description of the genus Alicyclobacillus. Int. J. Syst. Evol. Microbiol. 56: 815–819. Int. J. Syst. Evol. Microbiol. 55: 941–947. Kämpfer, P., U. Kohlweyer, B. Thiemer and J.R. Andreesen. 2006e. Kasai, H., A. Katsuta, H. Sekiguchi, S. Matsuda, K. Adachi, K. Shindo, Pseudonocardia tetrahydrofuranoxydans sp. nov. Int. J. Syst. Evol. Micro- J. Yoon, A. Yokota and Y. Shizuri. 2007. Rubritalea squalenifaciens sp. biol. 56: 1535–1538. nov., a squalene-producing marine bacterium belonging to subdivi- Kämpfer, P., J.M. Lindh, O. Terenius, S. Haghdoost, E. Falsen, H.J. sion 1 of the phylum ‘Verrucomicrobia’. Int. J. Syst. 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Rosselló- tion of Methylobacterium chloromethanicum and Methylobacterium dichlo- Mora, W.A. Lai and P.D. Rekha. 2006j. Pseudolabrys taiwanensis gen. romethanicum as later subjective synonyms of Methylobacterium extorquens nov., sp. nov., an alphaproteobacterium isolated from soil. Int. J. Syst. and of Methylobacterium lusitanum as a later subjective synonym of Evol. Microbiol. 56: 2469–2472. Methylobacterium rhodesianum. J. Gen. Appl. Microbiol. 51: 287–299. Kämpfer, P., C.C. Young, K.R. Sridhar, A.B. Arun, W.A. Lai, F.T. Shen Katsuta, A., K. Adachi, S. Matsuda, Y. Shizuri and H. Kasai. 2005. Ferrimo- and P.D. Rekha. 2006k. Transfer of [Flexibacter] sancti, [Flexibacter] fili- nas marina sp. nov. Int. J. Syst. Evol. Microbiol. 55: 1851–1855. formis, [Flexibacter] japonensis and [Cytophaga] arvensicola to the genus Kawamura, Y., X.G. Hou, F. Sultana, K. Hirose, M. Miyake, S.E. Shu and Chitinophaga and description of Chitinophaga skermanii sp. nov. Int. J. T. Ezaki. 1998. 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Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2 Kim, B.Y., H.Y. Weon, K.H. Lee, S.J. Seok, S.W. Kwon, S.J. Go and (The Proteobacteria), Part B (The Gammaproteobacteria), Springer, E. Stackebrandt. 2006c. Dyella yeojuensis sp. nov., isolated from green- New York, p. 58. house soil in Korea. Int. J. Syst. Evol. Microbiol. 56: 2079–2082. Kelly, D.P. and A.P. Wood. 2005b. Genus Incertae Sedis XVIII. Thiomonas Kim, B.Y., H.Y. Weon, S.H. Yoo, W.M. Chen, S.W. Kwon, S.J. Go and Moreira and Amils 1997, 527VP. In Brenner, Krieg, Staley and Garrity E. Stackebrandt. 2006d. Chitinimonas koreensis sp. nov., isolated from (Editors), Bergey’s Manual of Systematic Bacteriology, 2nd Edition, greenhouse soil in Korea. Int. J. Syst. Evol. Microbiol. 56: 1761–1764. Volume 2 (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Kim, B.Y., H.Y. Weon, S.H. Yoo, S.W. Kwon, Y.H. Cho, E. Stackebrandt Epsilonproteobacteria), Springer, New York, pp. 757–759. and S.J. Go. 2006e. Paracoccus homiensis sp. nov., isolated from a sea- Kelly, D.P., Y. Uchino, H. Huber, R. Amils and A.P. Wood. 2007. Reas- sand sample. Int. J. Syst. Evol. Microbiol. 56: 2387–2390. sessment of the phylogenetic relationships of Thiomonas cuprina. Int. Kim, B.Y., H.Y. Weon, S.H. Yoo, J.S. Kim, S.W. Kwon, E. Stackebrandt J. Syst. Evol. Microbiol. 57: 2720–2724. and S.J. Go. 2006f. Marinobacter koreensis sp. nov., isolated from sea Kendall, M.M., Y. Liu, M. Sieprawska-Lupa, K.O. Stetter, W.B. Whitman sand in Korea. Int. J. Syst. Evol. Microbiol. 56: 2653–2656. and D.R. Boone. 2006. Methanococcus aeolicus sp. nov., a mesophilic, Kim, B.Y., H.Y. Weon, S.H. Yoo, S.Y. Lee, S.W. Kwon, S.J. Go and E. methanogenic archaeon from shallow and deep marine sediments. Stackebrandt. 2006g. Variovorax soli sp. nov., isolated from green- Int. J. Syst. Evol. Microbiol. 56: 1525–1529. house soil. Int. J. Syst. Evol. Microbiol. 56: 2899–2901. Kevbrin, V.V., K. Zengler, A.M. Lysenko and J. Wiegel. 2005. Anoxyba- Kim, B.Y., H.Y. Weon, S.H. Yoo, S.B. Hong, S.W. Kwon, E. Stackebrandt cillus kamchatkensis sp. nov., a novel thermophilic facultative aerobic and S.J. Go. 2007. Niabella aurantiaca gen. nov., sp. nov., isolated bacterium with a broad pH optimum from the Geyser valley, Kam- from a greenhouse soil in Korea. Int. J. Syst. Evol. Microbiol. 57: chatka. Extremophiles. 9: 391–398. 538–541. Khan, S.T. and S. Harayama. 2007. Paraferrimonas sedimenticola gen. nov., Kim, D., K.S. Baik, M.S. Kim, B.M. Jung, T.S. Shin, G.H. Chung, M.S. sp. nov., a marine bacterium of the family Ferrimonadaceae. Int. J. Syst. Rhee and C.N. Seong. 2007. Shewanella haliotis sp. nov., isolated from Evol. Microbiol. 57: 1493–1498. the gut microflora of abalone, Haliotis discus hannai. Int. J. Syst. Evol. Khan, S.T., Y. Nakagawa and S. Harayama. 2006a. Krokinobacter gen. Microbiol. 57: 2926–2931. nov., with three novel species, in the family Flavobacteriaceae. Int. J. Kim, D.S., C.Y. Bae, J.J. Jeon, S.J. Chun, H.W. Oh, S.G. Hong, K.S. Baek, Syst. Evol. Microbiol. 56: 323–328. E.Y. Moon and K.S. Bae. 2004. Paenibacillus elgii sp. nov., with broad Khan, S.T., Y. Nakagawa and S. Harayama. 2006b. Sandarakinotalea sedi- antimicrobial activity. Int. J. Syst. Evol. Microbiol. 54: 2031–2035. minis gen. nov., sp. nov., a novel member of the family Flavobacteri- Kim, H., Y.J. Choo and J.C. Cho. 2007a. Litoricolaceae fam. nov., to aceae. Int. J. Syst. Evol. Microbiol. 56: 959–963. include Litoricola lipolytica gen. nov., sp. nov., a marine bacterium Khan, S.T., Y. Nakagawa and S. Harayama. 2006c. Sediminicola luteus gen. belonging to the order Oceanospirillales. Int. J. Syst. Evol. Microbiol. nov., sp. nov., a novel member of the family Flavobacteriaceae. Int. J. 57: 1793–1798. Syst. Evol. Microbiol. 56: 841–845. Kim, H., Y.J. Choo, J. Song, J.S. Lee, K.C. Lee and J.C. Cho. 2007b. Khan, S.T., Y. Fukunaga, Y. Nakagawa and S. Harayama. 2007a. Emended Marinobacterium litorale sp. nov. in the order Oceanospirillales. Int. J. descriptions of the genus Lewinella and of Lewinella cohaerens, Lewi- Syst. Evol. Microbiol. 57: 1659–1662. nella nigricans and Lewinella persica, and description of Lewinella lutea Kim, H.B., M.J. Park, H.C. Yang, D.S. An, H.Z. Jin and D.C. Yang. 2006. sp. nov. and Lewinella marina sp. nov. Int. J. Syst. Evol. Microbiol. 57: Burkholderia ginsengisoli sp. nov., a beta-glucosidase-producing bacte- 2946–2951. rium isolated from soil of a ginseng field. Int. J. Syst. Evol. Microbiol. Khan, S.T., Y. Nakagawa and S. Harayama. 2007b. Sediminibacter furfuro- 56: 2529–2533. sus gen. nov., sp. nov. and Gilvibacter sediminis gen. nov., sp. nov., novel Kim, H.G., N.V. Doronina, Y.A. Trotsenko and S.W. Kim. 2007. members of the family Flavobacteriaceae. Int. J. Syst. Evol. Microbiol. Methylophaga aminisulfidivorans sp. nov., a restricted facultatively 57: 265–269. methylotrophic marine bacterium. Int. J. Syst. Evol. Microbiol. 57: Khan, S.T., Y. Nakagawa and S. Harayama. 2007c. Galbibacter mesophilus 2096–2101. gen. nov., sp. nov., a novel member of the family Flavobacteriaceae. Int. Kim, H.J., S.C. Lee and B.K. Hwang. 2006. Streptomyces cheonanensis sp. J. Syst. Evol. Microbiol. 57: 969–973. nov., a novel streptomycete with antifungal activity. Int. J. Syst. Evol. Khan, S.T., Y. Nakagawa and S. Harayama. 2007d. Sediminitomix flava Microbiol. 56: 471–475. gen. nov., sp. nov., of the phylum Bacteroidetes, isolated from marine Kim, I.G., M.H. Lee, S.Y. Jung, J.J. Song, T.K. Oh and J.H. Yoon. 2005. sediment. Int. J. Syst. Evol. Microbiol. 57: 1689–1693. Exiguobacterium aestuarii sp. nov. and Exiguobacterium marinum sp. Kharroub, K., M. Aguilera, T. Quesada, J.A. Morillo, A. Ramos-Cormen- nov., isolated from a tidal flat of the Yellow Sea in Korea. Int. J. Syst. zana, A. Boulharouf and M. Monteoliva-Sánchez. 2006a. Salicola salis Evol. Microbiol. 55: 885–889. sp. nov., an extremely halophilic bacterium isolated from Ezzemoul Kim, K.H., L.N. Ten, Q.M. Liu, W.T. Im and S.T. Lee. 2006. Sphingobacte- sabkha in Algeria. Int. J. Syst. Evol. Microbiol. 56: 2647–2652. rium daejeonense sp. nov., isolated from a compost sample. Int. J. Syst. Kharroub, K., T. Quesada, R. Ferrer, S. Fuentes, M. Aguilera, A. Bou- Evol. Microbiol. 56: 2031–2036. lahrouf, A. Ramos-Cormenzana and M. Monteoliva-Sánchez. 2006b. Kim, K.K., H.S. Bae, P. Schumann and S.T. Lee. 2005a. Chryseobacterium Halorubrum ezzemoulense sp. nov., a halophilic archaeon isolated daecheongense sp. nov., isolated from freshwater lake sediment. Int. J. from Ezzemoul sabkha, Algeria. Int. J. Syst. Evol. Microbiol. 56: Syst. Evol. Microbiol. 55: 133–138. 1583–1588. Kim, K.K., M.K. Kim, J.H. Lim, H.Y. Park and S.T. Lee. 2005b. Transfer Kim, B.C., J.R. Park, J.W. Bae, S.K. Rhee, K.H. Kim, J.W. Oh and Y.H. of Chryseobacterium meningosepticum and Chryseobacterium miricola to Park. 2006. Stappia marina sp. nov., a marine bacterium isolated from Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. the Yellow Sea. Int. J. Syst. Evol. Microbiol. 56: 75–79. and Elizabethkingia miricola comb. nov. Int. J. Syst. Evol. Microbiol. Kim, B.Y., S.Y. Lee, H.Y. Weon, S.W. Kwon, S.J. Go, Y.K. Park, P. Schu- 55: 1287–1293. mann and D. Fritze. 2006a. Ureibacillus suwonensis sp. nov., isolated Kim, K.K., H.Y. Park, W. Park, I.S. Kim and S.T. Lee. 2005c. Microbacte- from cotton waste composts. Int. J. Syst. Evol. Microbiol. 56: 663– rium xylanilyticum sp. nov., a xylan-degrading bacterium isolated from 666. a biofilm. Int. J. Syst. Evol. Microbiol. 55: 2075–2079. Kim, B.Y., H.Y. Weon, S. Cousin, S.H. Yoo, S.W. Kwon, S.J. Go and Kim, K.K., L. Jin, H.C. Yang and S.T. Lee. 2007. Halomonas gomseomensis E. Stackebrandt. 2006b. Flavobacterium daejeonense sp. nov. and sp. nov., Halomonas janggokensis sp. nov., Halomonas salaria sp. nov. Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in and Halomonas denitrificans sp. nov., moderately halophilic bacteria Korea. Int. J. Syst. Evol. Microbiol. 56: 1645–1649. isolated from saline water. Int. J. Syst. Evol. Microbiol. 57: 675–681. APPENDIX 1 1389

Kim, M.K. and H.Y. Jung. 2007. Chitinophaga terrae sp. nov., isolated from bacterium isolated from an underground crude-oil storage cavity. soil. Int. J. Syst. Evol. Microbiol. 57: 1721–1724. Int. J. Syst. Evol. Microbiol. 54: 2297–2300. Kim, M.K., W.T. Im, Y.K. Shin, J.H. Lim, S.H. Kim, B.C. Lee, M.Y. Park, Kodama, Y., T. Ha le and K. Watanabe. 2007. Sulfurospirillum cavolei sp. K.Y. Lee and S.T. Lee. 2004. Kaistella koreensis gen. nov., sp. nov., a nov., a facultatively anaerobic sulfur-reducing bacterium isolated novel member of the Chryseobacterium–Bergeyella–Riemerella branch. from an underground crude oil storage cavity. Int. J. Syst. Evol. Int. J. Syst. Evol. Microbiol. 54: 2319–2324. Microbiol. 57: 827–831. Kim, M.K., W.T. Im, J.G. In, S.H. Kim and D.C. Yang. 2006. Thermomo- Koerber, R.T., G.E. Gasparich, M.F. Frana and W.L. 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hyperthermophilic archaeon from Suiyo Seamount. Int. J. Syst. Evol. Labeda, D.P. and R.M. Kroppenstedt. 2004. Emended description of Microbiol. 55: 2507–2514. the genus Glycomyces and description of Glycomyces algeriensis sp. nov., Kuwabara, T., M. Minaba, N. Ogi and M. Kamekura. 2007. Thermococcus Glycomyces arizonensis sp. nov. and Glycomyces lechevalierae sp. nov. Int. J. celericrescens sp. nov., a fast-growing and cell-fusing hyperthermophilic Syst. Evol. Microbiol. 54: 2343–2346. archaeon from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Micro- Labeda, D.P. and R.M. Kroppenstedt. 2005. Stackebrandtia nassauensis biol. 57: 437–443. gen. nov., sp. nov. and emended description of the family Glycomyc- Kuykendall, L.D. 2005. Order VI. Rhizobiales ord. nov. In Brenner, Krieg, etaceae. Int. J. Syst. Evol. Microbiol. 55: 1687–1691. Staley and Garrity (Editors), Bergey’s Manual of Systematic Bacteriol- Labeda, D.P. and R.M. Kroppenstedt. 2006. Goodfellowia gen. nov., a new ogy, 2nd Edition, Volume 2 (The Proteobacteria), Part C (The Alpha-, genus of the Pseudonocardineae related to Actinoalloteichus, containing Beta-, Delta-, and Epsilonproteobacteria), Springer, New York, p. 324. Goodfellowia coeruleoviolacea gen. nov., comb. nov. Int. J. Syst. Evol. Kwon, K.K., H.S. Lee, S.H. Yang and S.J. Kim. 2005. Kordiimonas gwang- Microbiol. 56: 1203–1207. yangensis gen. nov., sp. nov., a marine bacterium isolated from marine Labeda, D.P. and R.M. Kroppenstedt. 2007. Proposal of Umezawaea sediments that forms a distinct phyletic lineage (Kordiimonadales gen. nov., a new genus of the Actinosynnemataceae related to Saccha- ord. nov.) in the ‘Alphaproteobacteria’. Int. J. Syst. Evol. Microbiol. 55: rothrix, and transfer of Saccharothrix tangerinus Kinoshita et al. 2000 as 2033–2037. Umezawaea tangerina gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. Kwon, K.K., H.S. Lee, H.B. Jung, J.H. Kang and S.J. Kim. 2006a. Yeo- 57: 2758–2761. suana aromativorans gen. nov., sp. nov., a mesophilic marine bacte- Labeda, D.P., J.M. Donahue, S.F. Sells and R.M. Kroppenstedt. 2007. rium belonging to the family Flavobacteriaceae, isolated from estuarine Lentzea kentuckyensis sp. nov., of equine origin. Int. J. Syst. Evol. Micro- sediment of the South Sea, Korea. Int. J. Syst. Evol. Microbiol. 56: biol. 57: 1780–1783. 727–732. Labrenz, M., P.A. Lawson, B.J. Tindall, M.D. Collins and P. Hirsch. 2005. Kwon, K.K., S.J. Lee, J.H. Park, T.Y. Ahn and H.K. Lee. 2006b. Psychroser- Roseisalinus antarcticus gen. nov., sp. nov., a novel aerobic bacteri- pens mesophilus sp. nov., a mesophilic marine bacterium belonging to ochlorophyll a-producing α-proteobacterium isolated from hypersa- the family Flavobacteriaceae isolated from a young biofilm. Int. J. Syst. line Ekho Lake, Antarctica. Int. J. Syst. Evol. Microbiol. 55: 41–47. Evol. Microbiol. 56: 1055–1058. Lai, M.C., C.C. Lin, P.H. Yu, Y.F. Huang and S.C. Chen. 2004. Methanocal- Kwon, K.K., Y.K. Lee and H.K. Lee. 2006c. Costertonia aggregata gen. culus chunghsingensis sp. nov., isolated from an estuary and a marine nov., sp. nov., a mesophilic marine bacterium of the family Flavobac- fishpond in Taiwan. Int. J. Syst. Evol. Microbiol. 54: 183–189. teriaceae, isolated from a mature biofilm. Int. J. Syst. Evol. Microbiol. Lai, W.A., P. Kämpfer, A.B. Arun, F.T. Shen, B. Huber, P.D. Rekha and 56: 1349–1353. C.C. Young. 2006. Deinococcus ficus sp. nov., isolated from the rhizo- Kwon, K.K., J.H. Woo, S.H. Yang, J.H. Kang, S.G. Kang, S.J. Kim, T. Sato sphere of Ficus religiosa L. Int. J. Syst. Evol. Microbiol. 56: 787–791. and C. Kato. 2007. Altererythrobacter epoxidivorans gen. nov., sp. nov., Lan, P.T., M. Sakamoto, S. Sakata and Y. Benno. 2006. Bacteroides barne- an epoxide hydrolase-active, mesophilic marine bacterium isolated siae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum from cold-seep sediment, and reclassification of Erythrobacter luteolus sp. nov., isolated from chicken caecum. Int. J. Syst. Evol. Microbiol. Yoon et al. 2005 as Altererythrobacter luteolus comb. nov. Int. J. Syst. Evol. 56: 2853–2859. Microbiol. 57: 2207–2211. Lang, E., B. Griese, C. Spröer, P. Schumann, M. Steffen and S. Ver- Kwon, S.W., B.Y. Kim, H.Y. Weon, Y.K. Baek, B.S. Koo and S.J. Go. 2006. barg. 2007a. Characterization of ‘Pseudomonas azelaica’ DSM 9128, Idiomarina homiensis sp. nov., isolated from seashore sand in Korea. leading to emended descriptions of Pseudomonas citronellolis Seubert Int. J. Syst. Evol. Microbiol. 56: 2229–2233. 1960 (Approved Lists 1980) and Pseudomonas nitroreducens Iizuka and Kwon, S.W., B.Y. Kim, K.H. Lee, K.Y. Jang, S.J. Seok, J.S. Kwon, W.G. Kim Komagata 1964 (Approved Lists 1980), including Pseudomonas multi- and H.Y. Weon. 2007a. Pedobacter suwonensis sp. nov., isolated from resinivorans as its later heterotypic synonym. Int. J. Syst. Evol. Micro- the rhizosphere of Chinese cabbage (Brassica campestris). Int. J. Syst. biol. 57: 878–882. Evol. Microbiol. 57: 480–484. Lang, E., J. Swiderski, E. Stackebrandt, P. Schumann, C. Spröer and Kwon, S.W., B.Y. Kim, J. Song, H.Y. Weon, P. Schumann, B.J. Tindall, E. N. Sahin. 2007b. Herminiimonas saxobsidens sp. nov., isolated from a Stackebrandt and D. Fritze. 2007b. Sporosarcina koreensis sp. nov. and lichen-colonized rock. Int. J. Syst. Evol. Microbiol. 57: 2618–2622. Sporosarcina soli sp. nov., isolated from soil in Korea. Int. J. Syst. Evol. Lanoot, B., M. Vancanneyt, P. Dawyndt, M. Cnockaert, J. Zhang, Y. Microbiol. 57: 1694–1698. Huang, Z. Liu and J. Swings. 2004. BOX-PCR fingerprinting as a Kwon, S.W., B.Y. Kim, H.Y. Weon, Y.K. Baek and S.J. Go. 2007c. Arenimo- powerful tool to reveal synonymous names in the genus Streptomyces. nas donghaensis gen. nov., sp. nov., isolated from seashore sand. Int. J. Emended descriptions are proposed for the species Streptomyces cinere- Syst. Evol. Microbiol. 57: 954–958. orectus, S. fradiae, S. tricolor, S. colombiensis, S. filamentosus, S. vinaceus Kwon, S.W., S.Y. Lee, B.Y. Kim, H.Y. Weon, J.B. Kim, S.J. Go and G.B. and S. phaeopurpureus. Syst. Appl. Microbiol. 27: 84–92. Lee. 2007d. Bacillus niabensis sp. nov., isolated from cotton-waste Lanoot, B., M. Vancanneyt, A. Van Schoor, Z. Liu and J. Swings. 2005. composts for mushroom cultivation. Int. J. Syst. Evol. Microbiol. 57: Reclassification of Streptomyces nigrifaciens as a later synonym of Strep- 1909–1913. tomyces flavovirens; Streptomyces citreofluorescens, Streptomyces chrysomal- La Duc, M.T., M. Satomi and K. Venkateswaran. 2004. Bacillus odysseyi lus subsp. chrysomallus and Streptomyces fluorescens as later synonyms sp. nov., a round-spore-forming bacillus isolated from the Mars Odys- of Streptomyces anulatus; Streptomyces chibaensis as a later synonym of sey spacecraft. Int. J. Syst. Evol. Microbiol. 54: 195–201. Streptomyces corchorusii; Streptomyces flaviscleroticus as a later synonym La Scola, B., R.J. Birtles, G. Greub, T.J. Harrison, R.M. Ratcliff and D. of Streptomyces minutiscleroticus; and Streptomyces lipmanii, Streptomyces Raoult. 2004. Legionella drancourtii sp. nov., a strictly intracellular griseus subsp. alpha, Streptomyces griseus subsp. cretosus and Streptomyces amoebal pathogen. Int. J. Syst. Evol. Microbiol. 54: 699–703. willmorei as later synonyms of Streptomyces microflavus. Int. J. Syst. Evol. La, H.J., W.T. Im, L.N. Ten, M.S. Kang, D.Y. Shin and S.T. Lee. 2005. Microbiol. 55: 729–731. Paracoccus koreensis sp. nov., isolated from anaerobic granules in an Lau, H.T., J. Faryna and E.W. Triplett. 2006. Aquitalea magnusonii gen. upflow anaerobic sludge blanket (UASB) reactor. Int. J. Syst. Evol. nov., sp. nov., a novel Gram-negative bacterium isolated from a humic Microbiol. 55: 1657–1660. lake. Int. J. Syst. Evol. Microbiol. 56: 867–871. Labbe, N., S. Parent and R. Villemur. 2004. Nitratireductor aquibiodomus Lau, K.W., C.Y. Ng, J. Ren, S.C. Lau, P.Y. Qian, P.K. Wong, T.C. Lau and gen. nov., sp. nov., a novel α-proteobacterium from the marine deni- M. Wu. 2005. Owenweeksia hongkongensis gen. nov., sp. nov., a novel trification system of the Montreal Biodome (Canada). Int. J. Syst. marine bacterium of the phylum ‘Bacteroidetes’. Int. J. Syst. Evol. Evol. Microbiol. 54: 269–273. Microbiol. 55: 1051–1057. 1392 APPENDIX 1

Lau, K.W., J. Ren, N.L. Wai, S.C. Lau, P.Y. Qian, P.K. Wong and M. Wu. Lawson, P.A., H. Malnick, M.D. Collins, J.J. Shah, M.A. Chattaway, R. 2006a. Marinomonas ostreistagni sp. nov., isolated from a pearl-oyster Bendall and J.W. Hartley. 2005d. Description of Kingella potus sp. culture pond in Sanya, Hainan Province, China. Int. J. Syst. Evol. nov., an organism isolated from a wound caused by an animal bite. J. Microbiol. 56: 2271–2275. Clin. Microbiol. 43: 3526–3529. Lau, K.W., J. Ren, N.L. Wai, P.Y. Qian, P.K. Wong and M. Wu. 2006b. Lawson, P.A., M.D. Collins, E. Falsen and G. Foster. 2006. Catellicoccus Lishizhenia caseinilytica gen. nov., sp. nov., a marine bacterium of the marimammalium gen. nov., sp. nov., a novel Gram-positive, catalase- phylum Bacteroidetes. Int. J. Syst. Evol. Microbiol. 56: 2317–2322. negative, coccus-shaped bacterium from porpoise and grey seal. Int. Lau, K.W., J. Ren, M.C. Fung, P.C. Woo, K.Y. Yuen, K.K. Chan, P.Y. Qian, P.K. J. Syst. Evol. Microbiol. 56: 429–432. Wong and M. Wu. 2007. Fangia hongkongensis gen. nov., sp. nov., a novel Lawson, P.A., E. Falsen, M.A. Cotta and T.R. Whitehead. 2007. Vagococ- gammaproteobacterium of the order Thiotrichales isolated from coastal cus elongatus sp. nov., isolated from a swine-manure storage pit. Int. J. seawater of Hong Kong. Int. J. Syst. Evol. Microbiol. 57: 2665–2669. Syst. Evol. Microbiol. 57: 751–754. Lau, S.C., M.M. Tsoi, X. Li, I. Plakhotnikova, M. Wu, P.K. Wong and P.Y. le Roes, M. and P.R. Meyers. 2005. Streptomyces pharetrae sp. nov., isolated Qian. 2004. Loktanella hongkongensis sp. nov., a novel member of the from soil from the semi-arid Karoo region. Syst. Appl. Microbiol. 28: α-Proteobacteria originating from marine biofilms in Hong Kong 488–493. waters. Int. J. Syst. Evol. Microbiol. 54: 2281–2284. le Roes, M. and P.R. Meyers. 2006. Nocardia gamkensis sp. nov. Antonie Lau, S.C., M.M. Tsoi, X. Li, S. Dobretsov, Y. Plakhotnikova, P.K. Wong Van Leeuwenhoek. 90: 291–298. and P.Y. Qian. 2005a. Pseudoalteromonas spongiae sp. nov., a novel mem- le Roes, M. and P.R. Meyers. 2007. Actinomadura rudentiformis sp. nov., ber of the γ-Proteobacteria isolated from the sponge Mycale adhaerens isolated from soil. Int. J. Syst. Evol. Microbiol. 57: 45–50. in Hong Kong waters. Int. J. Syst. Evol. Microbiol. 55: 1593–1596. Le Roux, F., A. Goubet, F.L. Thompson, N. Faury, M. Gay, J. Swings and Lau, S.C., M.M. Tsoi, X. Li, I. Plakhotnikova, S. Dobretsov, K.W. Lau, D. Saulnier. 2005. Vibrio gigantis sp. nov., isolated from the haemo- M. Wu, P.K. Wong, J.R. Pawlik and P.Y. Qian. 2005b. Winogradskyella lymph of cultured oysters (Crassostrea gigas). Int. J. Syst. Evol. Micro- poriferorum sp. nov., a novel member of the family Flavobacteriaceae biol. 55: 2251–2255. isolated from a sponge in the Bahamas. Int. J. Syst. Evol. Microbiol. Lechner, U., D. Brodkorb, R. Geyer, G. Hause, C. Härtig, G. Auling, F. 55: 1589–1592. Fayolle-Guichard, P. Piveteau, R.H. Müller and T. Rohwerder. 2007. Lau, S.C., M.M. Tsoi, X. Li, I. Plakhotnikova, S. Dobretsov, P.K. Wong, Aquincola tertiaricarbonis gen. nov., sp. nov., a tertiary butyl moiety- J.R. Pawlik and P.Y. Qian. 2005c. Nonlabens tegetincola gen. nov., sp. degrading bacterium. Int. J. Syst. Evol. Microbiol. 57: 1295–1303. nov., a novel member of the family Flavobacteriaceae isolated from a Lee, C.S., K.K. Kim, Z. Aslam and S.T. Lee. 2007. Rhodanobacter thiooxydans microbial mat in a subtropical estuary. Int. J. Syst. Evol. Microbiol. sp. nov., isolated from a biofilm on sulfur particles used in an autotrophic 55: 2279–2283. denitrification process. Int. J. Syst. Evol. Microbiol. 57: 1775–1779. Lau, S.C., M.M. Tsoi, X. Li, I. Plakhotnikova, S. Dobretsov, P.K. Wong Lee, D.W., C.G. Hyun and S.D. Lee. 2007. Nocardioides marinisabuli sp. and P.Y. Qian. 2005d. Gramella portivictoriae sp. nov., a novel member nov., a novel actinobacterium isolated from beach sand. Int. J. 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Pawlik and P.Y. Qian. 2006b. Description of Fabibacter halo- Lee, H.G., D.S. An, W.T. Im, Q.M. Liu, J.R. Na, D.H. Cho, C.W. Jin, S.T. tolerans gen. nov., sp. nov. and Roseivirga spongicola sp. nov., and reclas- Lee and D.C. Yang. 2007. Chitinophaga ginsengisegetis sp. nov. and Chi- sification of [Marinicola] seohaensis as Roseivirga seohaensis comb. nov. tinophaga ginsengisoli sp. nov., isolated from soil of a ginseng field in Int. J. Syst. Evol. Microbiol. 56: 1059–1065. South Korea. Int. J. Syst. Evol. Microbiol. 57: 1396–1401. Lau, S.K.P., P.C.Y. Woo, G.K.S. Woo, A.M.Y. Fung, M.K.M. Wong, K. Lee, H.W., H.S. Yu, Q.M. Liu, H.M. Jung, D.S. An, W.T. Im, F.X. Jin and Chan, D.M.W. Tam and K. Yuen. 2004. Eggerthella hongkongensis sp. S.T. Lee. 2007. Kaistia granuli sp. nov., isolated from anaerobic gran- nov. and Eggerthella sinensis sp. nov., two novel Eggerthella species, ules in an upflow anaerobic sludge blanket reactor. Int. J. Syst. Evol. account for half of the cases of Eggerthella bacteremia. Diagn. Micro- Microbiol. 57: 2280–2283. biol. Infect. Dis. 49: 255–263. Lee, J.C., C.O. Jeon, J.M. Lim, S.M. Lee, J.M. Lee, S.M. Song, D.J. Park, Laurent, F., V. Rodríguez-Nava, L. Noussair, A. Couble, M.H. Nicolas- W.J. Li and C.J. Kim. 2005. Halomonas taeanensis sp. nov., a novel mod- Chanoine and P. Boiron. 2007. Nocardia ninae sp. nov., isolated from erately halophilic bacterium isolated from a solar saltern in Korea. a bronchial aspirate. Int. J. Syst. Evol. Microbiol. 57: 661–665. Int. J. Syst. Evol. Microbiol. 55: 2027–2032. Lawson, P.A., G. Foster, E. Falsen, N. Davison and M.D. Collins. 2004a. Lee, J.C., J.M. Lim, D.J. Park, C.O. Jeon, W.J. Li and C.J. Kim. 2006. Streptococcus halichoeri sp. nov., isolated from grey seals (Halichoerus Bacillus seohaeanensis sp. nov., a halotolerant bacterium that contains grypus). Int. J. Syst. Evol. Microbiol. 54: 1753–1756. L-lysine in its cell wall. Int. J. Syst. Evol. Microbiol. 56: 1893–1898. Lawson, P.A., Y. Song, C. Liu, D.R. Molitoris, M.L. Väisänen, M.D. Col- Lee, J.H., Y.S. Kim, T.J. Choi, W.J. Lee and Y.T. Kim. 2004. Paracoccus lins and S.M. Finegold. 2004b. Anaerotruncus colihominis gen. nov., sp. haeundaensis sp. nov., a Gram-negative, halophilic, astaxanthin-pro- nov., from human faeces. Int. J. Syst. Evol. Microbiol. 54: 413–417. ducing bacterium. Int. J. Syst. Evol. Microbiol. 54: 1699–1702. Lawson, P.A., G. Foster, E. Falsen and M.D. Collins. 2005a. Streptococcus Lee, J.S., Y.R. Pyun and K.S. Bae. 2004. Transfer of Bacillus ehimensis and marimammalium sp. nov., isolated from seals. Int. J. Syst. Evol. Micro- Bacillus chitinolyticus to the genus Paenibacillus with emended descrip- biol. 55: 271–274. tions of Paenibacillus ehimensis comb. nov. and Paenibacillus chitinolyti- Lawson, P.A., G. Foster, E. Falsen, S.J. Markopoulos and M.D. Collins. cus comb. nov. Int. J. Syst. Evol. Microbiol. 54: 929–933. 2005b. Streptococcus castoreus sp. nov., isolated from a beaver (Castor Lee, J.S., K.C. Lee and Y.H. Park. 2006a. Microbacterium koreense sp. nov., fiber). Int. J. Syst. Evol. Microbiol. 55: 843–846. from sea water in the South Sea of Korea. Int. J. Syst. Evol. Microbiol. Lawson, P.A., H.L. Greetham, G.R. Gibson, C. Giffard, E. Falsen and 56: 423–427. M.D. Collins. 2005c. Slackia faecicanis sp. nov., isolated from canine Lee, J.S., J.M. Lim, K.C. Lee, J.C. Lee, Y.H. Park and C.J. Kim. 2006b. faeces. Int. J. Syst. Evol. Microbiol. 55: 1243–1246. Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and APPENDIX 1 1393

transfer of Virgibacillus picturae to the genus Oceanobacillus as Ocean- Lee, S.D. 2006e. Brevibacterium samyangense sp. nov., an actinomycete obacillus picturae comb. nov. with emended descriptions. Int. J. Syst. isolated from a beach sediment. Int. J. Syst. Evol. Microbiol. 56: Evol. Microbiol. 56: 251–257. 1889–1892. Lee, J.W., W.T. Im, M.K. Kim and D.C. Yang. 2006. Lysobacter koreensis Lee, S.D. 2006f. Phycicoccus jejuensis gen. nov., sp. nov., an actinomycete sp. nov., isolated from a ginseng field. Int. J. Syst. Evol. Microbiol. isolated from seaweed. Int. J. Syst. Evol. Microbiol. 56: 2369–2373. 56: 231–235. Lee, S.D. 2006g. Blastococcus jejuensis sp. nov., an actinomycete from Lee, J.Y., J.Y. Lee, H.W. Jung and B.K. Hwang. 2005. Streptomyces koyangen- beach sediment, and emended description of the genus Blastococcus sis sp. nov., a novel actinomycete that produces 4-phenyl-3-butenoic Ahrens and Moll 1970. Int. J. Syst. Evol. Microbiol. 56: 2391–2396. acid. Int. J. Syst. Evol. Microbiol. 55: 257–262. Lee, S.D. 2007a. Tamlana crocina gen. nov., sp. nov., a marine bacterium Lee, K., Y.J. Choo, S.J. Giovannoni and J.C. Cho. 2007. Maritimibacter of the family Flavobacteriaceae, isolated from beach sediment in Korea. alkaliphilus gen. nov., sp. nov., a genome-sequenced marine bacte- Int. J. Syst. Evol. Microbiol. 57: 764–769. rium of the Roseobacter clade in the order Rhodobacterales. Int. J. Syst. Lee, S.D. 2007b. Marmoricola aequoreus sp. nov., a novel actinobacte- Evol. Microbiol. 57: 1653–1658. rium isolated from marine sediment. Int. J. Syst. Evol. Microbiol. 57: Lee, K., Y.J. Choo, S.J. Giovannoni and J.C. Cho. 2007a. Ruegeria pelagia 1391–1395. sp. nov., isolated from the Sargasso Sea, Atlantic Ocean. Int. J. Syst. Lee, S.D. 2007c. Devosia subaequoris sp. nov., isolated from beach sedi- Evol. Microbiol. 57: 1815–1818. ment. Int. J. Syst. Evol. Microbiol. 57: 2212–2215. Lee, K., H.K. Lee, T.H. Choi and J.C. Cho. 2007b. Robiginitomaculum ant- Lee, S.D. 2007d. Labedella gwakjiensis gen. nov., sp. nov., a novel actino- arcticum gen. nov., sp. nov., a member of the family Hyphomonadaceae, mycete of the family Microbacteriaceae. Int. J. Syst. Evol. Microbiol. 57: from Antarctic seawater. Int. J. Syst. Evol. Microbiol. 57: 2595–2599. 2498–2502. Lee, K., H.K. Lee, T.H. Choi and J.C. Cho. 2007c. Sejongia marina sp. Lee, S.D. 2007e. Lewinella agarilytica sp. nov., a novel marine bacterium nov., isolated from Antarctic seawater. Int. J. Syst. Evol. Microbiol. of the phylum Bacteroidetes, isolated from beach sediment. Int. J. Syst. 57: 2917–2921. Evol. Microbiol. 57: 2814–2818. Lee, K.B., C.T. Liu, Y. Anzai, H. Kim, T. Aono and H. Oyaizu. 2005. The Lee, S.D. 2007f. Nocardioides furvisabuli sp. nov., isolated from black hierarchical system of the ‘Alphaproteobacteria’: description of Hyph- sand. Int. J. Syst. Evol. Microbiol. 57: 35–39. omonadaceae fam. nov., Xanthobacteraceae fam. nov. and Erythrobacter- Lee, S.D. and H.S. Jeong. 2006. Actinomadura hallensis sp. nov., a novel aceae fam. nov. Int. J. Syst. Evol. Microbiol. 55: 1907–1919. actinomycete isolated from Mt. Halla in Korea. Int. J. Syst. Evol. Lee, M., M.K. Kim, M. Vancanneyt, J. Swings, S.H. Kim, M.S. Kang and Microbiol. 56: 259–264. S.T. Lee. 2005. Tetragenococcus koreensis sp. nov., a novel rhamnolipid- Lee, S.D. and S.J. Kim. 2007. Aeromicrobium tamlense sp. nov., isolated producing bacterium. Int. J. Syst. Evol. Microbiol. 55: 1409–1413. from dried seaweed. Int. J. Syst. Evol. Microbiol. 57: 337–341. Lee, M., L.N. Ten, S.-H. Baek, W.-T. Im, Z. Aslam and S.-T. Lee. 2007. Lee, S.D. and D.W. Lee. 2007. Lapillicoccus jejuensis gen. nov., sp. nov., a Paenibacillus ginsengisoli sp. nov., a novel bacterium isolated from soil novel actinobacterium of the family Intrasporangiaceae, isolated from of a ginseng field in Pocheon province, South Korea. Antonie van stone. Int. J. Syst. Evol. Microbiol. 57: 2794–2798. Leeuwenhoek. 91: 127–135. Lee, S.D., L.L. Kinkel and D.A. Samac. 2006. Amycolatopsis minnesotensis Lee, N., C.M. Cellamare, C. Bastianutti, R. Rosselló-Mora, P. Kämpfer, sp. nov., isolated from a prairie soil. Int. J. Syst. Evol. Microbiol. 56: W. Ludwig, K.H. Schleifer and L. Stante. 2004. Emended description 265–269. of the species Lampropedia hyalina. Int. J. Syst. Evol. Microbiol. 54: Lee, Y.J., I.D. Wagner, M.E. Brice, V.V. Kevbrin, G.L. Mills, C.S. 1709–1715. Romanek and J. Wiegel. 2005. Thermosediminibacter oceani gen. nov., Lee, O.O., S.C. Lau, M.M. Tsoi, X. Li, I. Plakhotnikova, S. Dobretsov, sp. nov. and Thermosediminibacter litoriperuensis sp. nov., new anaerobic M.C. Wu, P.K. Wong and P.Y. Qian. 2006a. Gillisia myxillae sp. nov., thermophilic bacteria isolated from Peru Margin. Extremophiles 9: a novel member of the family Flavobacteriaceae, isolated from the 375–383. marine sponge Myxilla incrustans. Int. J. Syst. Evol. Microbiol. 56: Lee, Y.J., C.S. Romanek, G.L. Mills, R.C. Davis, W.B. Whitman and J. 1795–1799. Wiegel. 2006. Gracilibacter thermotolerans gen. nov., sp. nov., an anaero- Lee, O.O., S.C. Lau, M.M. Tsoi, X. Li, I. Plakhotnikova, S. Dobretsov, bic, thermotolerant bacterium from a constructed wetland receiving M.C. Wu, P.K. Wong, M. Weinbauer and P.Y. Qian. 2006b. Shewanella acid sulfate water. Int. J. Syst. Evol. Microbiol. 56: 2089–2093. irciniae sp. nov., a novel member of the family Shewanellaceae, isolated Lee, Y.J., M. Dashti, A. Prange, F.A. Rainey, M. Rohde, W.B. Whitman from the marine sponge Ircinia dendroides in the Bay of Villefranche, and J. Wiegel. 2007a. Thermoanaerobacter sulfurigignens sp. nov., an Mediterranean Sea. Int. J. Syst. Evol. Microbiol. 56: 2871–2877. anaerobic thermophilic bacterium that reduces 1 M thiosulfate to Lee, O.O., M.M. Tsoi, X. Li, P.K. Wong and P.Y. Qian. 2007. Thalasso- elemental sulfur and tolerates 90 mM sulfite. Int. J. Syst. Evol. Micro- coccus halodurans gen. nov., sp. nov., a novel halotolerant member biol. 57: 1429–1434. of the Roseobacter clade isolated from the marine sponge Halichon- Lee, Y.J., C.S. Romanek and J. Wiegel. 2007b. Clostridium aciditolerans sp. dria panicea at Friday Harbor, USA. Int. J. Syst. Evol. Microbiol. 57: nov., an acid-tolerant spore-forming anaerobic bacterium from con- 1919–1924. structed wetland sediment. Int. J. Syst. Evol. Microbiol. 57: 311–315. Lee, S.B., S.E. Strand, H.D. Stensel and R.P. Herwig. 2004. Pseudono- Lehnen, A., H.J. Busse, K. Frolich, M. Krasinska, P. Kämpfer and S. cardia chloroethenivorans sp. nov., a chloroethene-degrading actinomy- Speck. 2006. Arcanobacterium bialowiezense sp. nov. and Arcanobacte- cete. Int. J. Syst. Evol. Microbiol. 54: 131–139. rium bonasi sp. nov., isolated from the prepuce of European bison Lee, S.D. 2006a. Amycolatopsis jejuensis sp. nov. and Amycolatopsis halotol- bulls (Bison bonasus) suffering from balanoposthitis, and emended erans sp. nov., novel actinomycetes isolated from a natural cave. Int. J. description of the genus Arcanobacterium Collins et al. 1983. Int. J. Syst. Evol. Microbiol. 56: 549–553. Syst. Evol. Microbiol. 56: 861–866. Lee, S.D. 2006b. Nocardia jejuensis sp. nov., a novel actinomycete isolated Leisner, J.J., M. Vancanneyt, R. Van der Meulen, K. Lefebvre, K. Engel- from a natural cave on Jeju Island, Republic of Korea. Int. J. Syst. been, B. Hoste, B.G. Laursen, L. Bay, G. Rusul, L. De Vuyst and J. Evol. Microbiol. 56: 559–562. Swings. 2005. Leuconostoc durionis sp. nov., a heterofermenter with no Lee, S.D. 2006c. Actinocorallia cavernae sp. nov., isolated from a natural detectable gas production from glucose. Int. J. Syst. Evol. Microbiol. cave in Jeju, Korea. Int. J. Syst. Evol. Microbiol. 56: 1085–1088. 55: 1267–1270. Lee, S.D. 2006d. Kineococcus marinus sp. nov., isolated from marine Lengyel, K., E. Lang, A. Fodor, E. Szállás, P. Schumann and E. Stack- sediment of the coast of Jeju, Korea. Int. J. Syst. Evol. Microbiol. 56: ebrandt. 2005. Description of four novel species of Xenorhabdus, family 1279–1283. Enterobacteriaceae: Xenorhabdus budapestensis sp. nov., Xenorhabdus 1394 APPENDIX 1

ehlersii sp. nov., Xenorhabdus innexi sp. nov., and Xenorhabdus szentir- Yania flava sp. nov. and emended description of the genus Yania. Int. maii sp. nov. Syst. Appl. Microbiol. 28: 115–122. J. Syst. Evol. Microbiol. 55: 1933–1938. Levett, P.N., R.E. Morey, R. Galloway, A.G. Steigerwalt and W.A. Ellis. Li, W.J., Y.G. Zhang, Y.Q. Zhang, S.K. Tang, P. Xu, L.H. Xu and C.L. 2005. Reclassification of Leptospira parva Hovind-Hougen et al. 1982 Jiang. 2005f. Streptomyces sodiiphilus sp. nov., a novel alkaliphilic actin- as Turneriella parva gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. omycete. Int. J. Syst. Evol. Microbiol. 55: 1329–1333. 55: 1497–1499. Li, W.J., R.M. Kroppenstedt, D. Wang, S.K. Tang, J.C. Lee, D.J. Park, C.J. Levett, P.N., R.E. Morey, R.L. Galloway and A.G. Steigerwalt. 2006. Lep- Kim, L.H. Xu and C.L. Jiang. 2006a. Five novel species of the genus tospira broomii sp. nov., isolated from humans with leptospirosis. Int. J. Nocardiopsis isolated from hypersaline soils and emended description Syst. Evol. Microbiol. 56: 671–673. of Nocardiopsis salina Li et al. 2004. Int. J. Syst. Evol. Microbiol. 56: L’Haridon, S., M.L. Miroshnichenko, N.A. Kostrikina, B.J. Tindall, S. 1089–1096. Spring, P. Schumann, E. Stackebrandt, E.A. Bonch-Osmolovskaya Li, W.J., D. Wang, Y.Q. Zhang, L.H. Xu and C.L. Jiang. 2006b. Kribbella and C. Jeanthon. 2006. Vulcanibacillus modesticaldus gen. nov., sp. yunnanensis sp. nov., Kribbella alba sp. nov., two novel species of genus nov., a strictly anaerobic, nitrate-reducing bacterium from deep-sea Kribbella isolated from soils in Yunnan, China. Syst. Appl. Microbiol. hydrothermal vents. Int. J. Syst. Evol. Microbiol. 56: 1047–1053. 29: 29–35. L’Haridon, S., A.L. Reysenbach, B.J. Tindall, P. Schönheit, A. Banta, Li, W.J., Y.Q. Zhang, P. Schumann, H.H. Chen, W.N. Hozzein, X.P. Tian, U. Johnsen, P. Schumann, A. Gambacorta, E. Stackebrandt and C. L.H. Xu and C.L. Jiang. 2006c. Kocuria aegyptia sp. nov., a novel acti- Jeanthon. 2006. Desulfurobacterium atlanticum sp. nov., Desulfurobacte- nobacterium isolated from a saline, alkaline desert soil in Egypt. Int. rium pacificum sp. nov. and Thermovibrio guaymasensis sp. nov., three J. Syst. Evol. Microbiol. 56: 733–737. thermophilic members of the Desulfurobacteriaceae fam. nov., a deep Li, W.J., Y.Q. Zhang, P. Schumann, X.P. Tian, Y.Q. Zhang, L.H. Xu and branching lineage within the Bacteria. Int. J. Syst. Evol. Microbiol. 56: C.L. Jiang. 2006d. Sinococcus qinghaiensis gen. nov., sp. nov., a novel 2843–2852. member of the order Bacillales from a saline soil in China. Int. J. Syst. Li, B., K. Furihata, L.X. Ding and A. Yokota. 2007a. Rhodococcus kyotonen- Evol. Microbiol. 56: 1189–1192. sis sp. nov., a novel actinomycete isolated from soil. Int. J. Syst. Evol. Li, W.J., P. Xu, P. Schumann, Y.Q. Zhang, R. Pukall, L.H. Xu, E. Stack- Microbiol. 57: 1956–1959. ebrandt and C.L. Jiang. 2007. Georgenia ruanii sp. nov., a novel Li, B., C.H. Xie and A. Yokota. 2007b. Nocardioides exalbidus sp. nov., a actinobacterium isolated from forest soil in Yunnan (China), and novel actinomycete isolated from lichen in Izu-Oshima Island, Japan. emended description of the genus Georgenia. Int. J. Syst. Evol. Micro- Actinomycetologica 21: 22–26. biol. 57: 1424–1428. Li, W.J., H.H. Chen, P. Xu, Y.Q. Zhang, P. Schumann, S.K. Tang, L.H. Li, X., D. Zhang, F. Chen, J. Ma, Y. Dong and L. Zhang. 2004. Klebsiella Xu and C.L. Jiang. 2004a. Yania halotolerans gen. nov., sp. nov., a novel singaporensis sp. nov., a novel isomaltulose-producing bacterium. Int. member of the suborder Micrococcineae from saline soil in China. Int. J. Syst. Evol. Microbiol. 54: 2131–2136. J. Syst. Evol. Microbiol. 54: 525–531. Li, Y., Y. Kawamura, N. Fujiwara, T. Naka, H. Liu, X. Huang, K. Kobayashi Li, W.J., H.H. Chen, Y.Q. Zhang, P. Schumann, E. Stackebrandt, L.H. and T. Ezaki. 2003. Chryseobacterium miricola sp. nov., a novel species Xu and C.L. Jiang. 2004b. Nesterenkonia halotolerans sp. nov. and Nest- isolated from condensation water of space station Mir. Syst. Appl. erenkonia xinjiangensis sp. nov., actinobacteria from saline soils in the Microbiol. 26: 523–528. west of China. Int. J. Syst. Evol. Microbiol. 54: 837–841. Li, Y., Y. Kawamura, N. Fujiwara, T. Naka, H. Liu, X. Huang, K. Kobayashi Li, W.J., Y. Jiang, R.M. Kroppenstedt, L.H. Xu and C.L. Jiang. 2004c. and T. Ezaki. 2004a. Sphingomonas yabuuchiae sp. nov. and Brevundimo- Nocardia alba sp.nov., a novel actinomycete strain isolated from soil in nas nasdae sp. nov., isolated from the Russian space laboratory Mir. China. Syst. Appl. Microbiol. 27: 308–312. Int. J. Syst. Evol. Microbiol. 54: 819–825. Li, W.J., D.J. Park, S.K. Tang, D. Wang, J.C. Lee, L.H. Xu, C.J. Kim and Li, Y., Y. Kawamura, N. Fujiwara, T. Naka, H. Liu, X. Huang, C.L. Jiang. 2004d. Nocardiopsis salina sp. nov., a novel halophilic actin- K. Kobayashi and T. Ezaki. 2004b. Rothia aeria sp. nov., Rhodococcus omycete isolated from saline soil in China. Int. J. Syst. Evol. Micro- baikonurensis sp. nov. and Arthrobacter russicus sp. nov., isolated from biol. 54: 1805–1809. air in the Russian space laboratory Mir. Int. J. Syst. Evol. Microbiol. Li, W.J., D. Wang, Y.Q. Zhang, P. Schumann, E. Stackebrandt, L.H. Xu 54: 827–835. and C.L. Jiang. 2004e. Kribbella antibiotica sp. nov., a novel nocardio- Li, Y., E. Raftis, C. Canchaya, G.F. Fitzgerald, D. van Sinderen and P.W. form actinomycete strain isolated from soil in Yunnan, China. Syst. O’Toole. 2006. Polyphasic analysis indicates that Lactobacillus salivarius Appl. Microbiol. 27: 160–165. subsp. salivarius and Lactobacillus salivarius subsp. salicinius do not merit Li, W.J., Y.Q. Zhang, D.J. Park, C.T. Li, L.H. Xu, C.J. Kim and C.L. Jiang. separate subspecies status. Int. J. Syst. Evol. Microbiol. 56: 2397–2403. 2004f. Duganella violaceinigra sp. nov., a novel mesophilic bacterium Liebgott, P.P., L. Casalot, S. Paillard, J. Lorquin and M. Labat. 2006. isolated from forest soil. Int. J. Syst. Evol. Microbiol. 54: 1811–1814. Marinobacter vinifirmus sp. nov., a moderately halophilic bacterium Li, W.J., H.H. Chen, C.J. Kim, D.J. Park, S.K. Tang, J.C. Lee, L.H. Xu and isolated from a wine-barrel-decalcification wastewater. Int. J. Syst. C.L. Jiang. 2005a. Microbacterium halotolerans sp. nov., isolated from a Evol. Microbiol. 56: 2511–2516. saline soil in the west of China. Int. J. Syst. Evol. Microbiol. 55: 67–70. Lim, J.M., J.H. Yoon, J.C. Lee, C.O. Jeon, D.J. Park, C. Sung and C.J. Li, W.J., H.H. Chen, C.J. Kim, Y.Q. Zhang, D.J. Park, J.C. Lee, L.H. Xu Kim. 2004. Halomonas koreensis sp. nov., a novel moderately halophilic and C.L. Jiang. 2005b. Nesterenkonia sandarakina sp. nov. and Nesteren- bacterium isolated from a solar saltern in Korea. Int. J. Syst. Evol. konia lutea sp. nov., novel actinobacteria, and emended description of Microbiol. 54: 2037–2042. the genus Nesterenkonia. Int. J. Syst. Evol. Microbiol. 55: 463–466. Lim, J.M., C.O. Jeon, D.J. Park, H.R. Kim, B.J. Yoon and C.J. Kim. 2005a. Li, W.J., H.H. Chen, Y.Q. Zhang, C.J. Kim, D.J. Park, J.C. Lee, L.H. Xu Pontibacillus marinus sp. nov., a moderately halophilic bacterium from and C.L. Jiang. 2005c. Citricoccus alkalitolerans sp. nov., a novel acti- a solar saltern, and emended description of the genus Pontibacillus. nobacterium isolated from a desert soil in Egypt. Int. J. Syst. Evol. Int. J. Syst. Evol. Microbiol. 55: 1027–1031. Microbiol. 55: 87–90. Lim, J.M., C.O. Jeon, S.M. Song and C.J. Kim. 2005b. Pontibacillus chungwhen- Li, W.J., P. Schumann, Y.Q. Zhang, G.Z. Chen, X.P. Tian, L.H. Xu, E. sis gen. nov., sp. nov., a moderately halophilic Gram-positive bacterium Stackebrandt and C.L. Jiang. 2005d. Marinococcus halotolerans sp. nov., from a solar saltern in Korea. Int. 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Lim, J.M., C.O. Jeon and C.J. Kim. 2006a. Bacillus taeanensis sp. nov., Liu, C., Y. Wu, L. Li, Y. Ma and Z. Shao. 2007. Thalassospira xiamenen- a halophilic Gram-positive bacterium from a solar saltern in Korea. sis sp. nov. and Thalassospira profundimaris sp. nov. Int. J. Syst. Evol. Int. J. Syst. Evol. Microbiol. 56: 2903–2908. Microbiol. 57: 316–320. Lim, J.M., C.O. Jeon, J.C. Lee, Y.J. Ju, D.J. Park and C.J. Kim. 2006b. Liu, J., T. Nakayama, H. Hemmi, Y. Asano, N. Tsuruoka, K. Shimomura, Bacillus koreensis sp. nov., a spore-forming bacterium, isolated from M. Nishijima and T. Nishino. 2005. Microbacterium natoriense sp. nov., the rhizosphere of willow roots in Korea. Int. J. Syst. Evol. Microbiol. a novel d-aminoacylase-producing bacterium isolated from soil in 56: 59–63. Natori, Japan. Int. J. Syst. Evol. Microbiol. 55: 661–665. Lim, J.M., C.O. Jeon, J.C. Lee, S.M. Song, K.Y. Kim and C.J. Kim. 2006c. Liu, L., B. Zhang, H. Tong and X. Dong. 2006. 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Vancan- Vaughan et al. 1979) Collins et al. 1984 and Enterococcus saccharomini- neyt, J. Swings, K.O. Kim, A.M. Lysenko, M. Rohde, G.M. Frolova, mus Vancanneyt et al. 2004 as a later synonym of Enterococcus italicus V.V. Mikhailov and K.S. Bae. 2005a. Winogradskyella thalassocola gen. Fortina et al. 2004. Int. J. Syst. Evol. Microbiol. 56: 413–416. nov., sp. nov., Winogradskyella epiphytica sp. nov. and Winogradskyella Naser, S.M., M. Vancanneyt, C. Snauwaert, G. Vrancken, B. Hoste, L. De eximia sp. nov., marine bacteria of the family Flavobacteriaceae. Int. J. Vuyst and J. Swings. 2006d. Reclassification of Lactobacillus amylophi- Syst. Evol. Microbiol. 55: 49–55. 1400 APPENDIX 1

Nedashkovskaya, O.I., S.B. Kim, K.H. Lee, K.S. Bae, G.M. Frolova, V.V. Nedashkovskaya, O.I., S.B. Kim, M. Vancanneyt, D.S. Shin, A.M. Lysenko, Mikhailov and I.S. Kim. 2005b. Pibocella ponti gen. nov., sp. nov., a novel L.S. Shevchenko, V.B. Krasokhin, V.V. Mikhailov, J. Swings and K.S. marine bacterium of the family Flavobacteriaceae isolated from the green Bae. 2006c. Salegentibacter agarivorans sp. nov., a novel marine bacte- alga Acrosiphonia sonderi. Int. J. Syst. Evol. Microbiol. 55: 177–181. rium of the family Flavobacteriaceae isolated from the sponge Artemi- Nedashkovskaya, O.I., S.B. Kim, D.H. Lee, A.M. Lysenko, L.S. sina sp. Int. J. Syst. Evol. Microbiol. 56: 883–887. Shevchenko, G.M. Frolova, V.V. Mikhailov, K.H. Lee and K.S. Bae. Nedashkovskaya, O.I., S.B. Kim, M. Vancanneyt, C. Snauwaert, A.M. 2005c. Roseivirga ehrenbergii gen. nov., sp. nov., a novel marine bacte- Lysenko, M. Rohde, G.M. Frolova, N.V. Zhukova, V.V. Mikhailov, K.S. rium of the phylum ‘Bacteroidetes’, isolated from the green alga Ulva Bae, H.W. Oh and J. Swings. 2006d. Formosa agariphila sp. nov., a bud- fenestrata. Int. J. Syst. Evol. Microbiol. 55: 231–234. ding bacterium of the family Flavobacteriaceae isolated from marine Nedashkovskaya, O.I., S.B. Kim, K.H. Lee, V.V. Mikhailov and K.S. Bae. environments, and emended description of the genus Formosa. Int. J. 2005d. Gillisia mitskevichiae sp. nov., a novel bacterium of the family Syst. Evol. Microbiol. 56: 161–167. Flavobacteriaceae, isolated from sea water. Int. J. Syst. Evol. Microbiol. Nedashkovskaya, O.I., S.B. Kim, N.V. Zhukova, J. Kwak, V.V. Mikhailov 55: 321–323. and K.S. Bae. 2006e. Mesonia mobilis sp. nov., isolated from seawa- Nedashkovskaya, O.I., S.B. Kim, M.S. Lee, M.S. Park, K.H. Lee, A.M. ter, and emended description of the genus Mesonia. Int. J. Syst. Evol. Lysenko, H.W. Oh, V.V. Mikhailov and K.S. Bae. 2005e. Cyclobacte- Microbiol. 56: 2433–2436. rium amurskyense sp. nov., a novel marine bacterium isolated from sea Nedashkovskaya, O.I., M. Vancanneyt, L. Christiaens, N.I. Kalinovskaya, water. Int. J. Syst. Evol. Microbiol. 55: 2391–2394. V.V. Mikhailov and J. Swings. 2006f. Aquimarina intermedia sp. nov., Nedashkovskaya, O.I., S.B. Kim, A.M. Lysenko, G.M. Frolova, V.V. reclassification of Stanierella latercula (Lewin 1969) as Aquimarina Mikhailov, K.S. Bae, D.H. Lee and I.S. Kim. 2005f. Gramella echini- latercula comb. nov. and Gaetbulimicrobium brevivitae Yoon et al. 2006 cola gen. nov., sp. nov., a novel halophilic bacterium of the family as Aquimarina brevivitae comb. nov. and emended description of the Flavobacteriaceae isolated from the sea urchin Strongylocentrotus interme- genus Aquimarina. Int. J. Syst. Evol. Microbiol. 56: 2037–2041. dius. Int. J. Syst. Evol. Microbiol. 55: 391–394. Nedashkovskaya, O.I., M. Vancanneyt, I. Cleenwerck, C. Snauwaert, S.B. Nedashkovskaya, O.I., S.B. Kim, A.M. Lysenko, G.M. Frolova, V.V. Kim, A.M. Lysenko, L.S. Shevchenko, K.H. Lee, M.S. Park, G.M. Frol- Mikhailov and K.S. Bae. 2005g. Bizionia paragorgiae gen. nov., sp. nov., ova, V.V. Mikhailov, K.S. Bae and J. Swings. 2006g. Arenibacter pallad- a novel member of the family Flavobacteriaceae isolated from the soft ensis sp. nov., a novel marine bacterium isolated from the green alga coral Paragorgia arborea. Int. J. Syst. Evol. Microbiol. 55: 375–378. Ulva fenestrata, and emended description of the genus Arenibacter. Int. Nedashkovskaya, O.I., S.B. Kim, A.M. Lysenko, G.M. Frolova, V.V. J. Syst. Evol. Microbiol. 56: 155–160. Mikhailov, K.H. Lee and K.S. Bae. 2005h. Description of Aquima- Nedashkovskaya, O.I., S.B. Kim, B. Hoste, D.S. Shin, I.A. Beleneva, rina muelleri gen. nov., sp. nov., and proposal of the reclassification M. Vancanneyt and V.V. Mikhailov. 2007a. Echinicola vietnamensis sp. of [Cytophaga] latercula Lewin 1969 as Stanierella latercula gen. nov., nov., a member of the phylum Bacteroidetes isolated from seawater. comb. nov. Int. J. Syst. Evol. Microbiol. 55: 225–229. Int. J. Syst. Evol. Microbiol. 57: 761–763. Nedashkovskaya, O.I., S.B. Kim., A.M. Lysenko, N.I. Kalinovskaya, V.V. Nedashkovskaya, O.I., S.B. Kim, K.K. Kwon, D.S. Shin, X. Luo, S.J. Mikhailov, I.S. Kim and K.S. Bae. 2005i. Polaribacter butkevichii sp. nov., Kim and V.V. Mikhailov. 2007b. Proposal of Algoriphagus vanfongensis a novel marine mesophilic bacterium of the family Flavobacteriaceae. sp. nov., transfer of members of the genera Hongiella Yi and Chun Curr. Microbiol. 51: 408–412. 2004 emend. Nedashkovskaya et al. 2004 and Chimaereicella Tiago et Nedashkovskaya, O.I., S.B. Kim, A.M. Lysenko, V.V. Mikhailov, K.S. Bae al. 2006 to the genus Algoriphagus, and emended description of the and I.S. Kim. 2005j. Salegentibacter mishustinae sp. nov., isolated from genus Algoriphagus Bowman et al. 2003 emend. Nedashkovskaya et al. the sea urchin Strongylocentrotus intermedius. Int. J. Syst. Evol. Micro- 2004. Int. J. Syst. Evol. Microbiol. 57: 1988–1994. biol. 55: 235–238. Nedashkovskaya, O.I., S.B. Kim, A.M. Lysenko, K.H. Lee, K.S. Bae and Nedashkovskaya, O.I., S.B. Kim, A.M. Lysenko, M.S. Park, V.V. Mikhailov, V.V. Mikhailov. 2007c. Arenibacter echinorum sp. nov., isolated from the K.S. Bae and H.Y. Park. 2005k. Roseivirga echinicomitans sp. nov., a sea urchin Strongylocentrotus intermedius. Int. J. Syst. Evol. Microbiol. novel marine bacterium isolated from the sea urchin Strongylocentro- 57: 2655–2659. tus intermedius, and emended description of the genus Roseivirga. Int. Nedashkovskaya, O.I., S.B. Kim, D.S. Shin, I.A. Beleneva and V.V. J. Syst. Evol. Microbiol. 55: 1797–1800. Mikhailov. 2007d. Fulvivirga kasyanovii gen. nov., sp. nov., a novel Nedashkovskaya, O.I., S.B. Kim, M. Suzuki, L.S. Shevchenko, M.S. Lee, member of the phylum Bacteroidetes isolated from seawater in a mus- K.H. Lee, M.S. Park, G.M. Frolova, H.W. Oh, K.S. Bae, H.Y. Park and sel farm. Int. J. Syst. Evol. Microbiol. 57: 1046–1049. V.V. Mikhailov. 2005l. Pontibacter actiniarum gen. nov., sp. nov., a novel Nedashkovskaya, O.I., M. Vancanneyt, S.B. Kim, B. Hoste and K.S. Bae. member of the phylum ‘Bacteroidetes’, and proposal of Reichenbachiella 2007e. Algibacter mikhailovii sp. nov., a novel marine bacterium of gen. nov. as a replacement for the illegitimate prokaryotic generic the family Flavobacteriaceae, and emended description of the genus name Reichenbachia Nedashkovskaya et al. 2003. Int. J. Syst. Evol. Algibacter. Int. J. Syst. Evol. Microbiol. 57: 2147–2150. Microbiol. 55: 2583–2588. Nedashkovskaya, O.I., M. Vancanneyt, P. De Vos, S.B. Kim, M.S. Lee and Nedashkovskaya, O.I., M. Vancanneyt, P. Dawyndt, K. Engelbeen, V.V. Mikhailov. 2007f. Maribacter polysiphoniae sp. nov., isolated from a K. Vandemeulebroecke, I. Cleenwerck, B. Hoste, J. Mergaert, T.L. red alga. Int. J. Syst. Evol. Microbiol. 57: 2840–2843. Tan, G.M. Frolova, V.V. Mikhailov and J. Swings. 2005m. Reclassifica- Neimark, H., B. Hoff and M. Ganter. 2004. Mycoplasma ovis comb. nov. tion of [Cytophaga] marinoflava Reichenbach 1989 as Leeuwenhoekiella (formerly Eperythrozoon ovis), an epierythrocytic agent of haemo- marinoflava gen. nov., comb. nov. and description of Leeuwenhoekiella lytic anaemia in sheep and goats. Int. J. Syst. Evol. Microbiol. 54: aequorea sp. nov. Int. J. Syst. Evol. Microbiol. 55: 1033–1038. 365–371. Nedashkovskaya, O.I., S.B. Kim, J. Kwak, V.V. Mikhailov and K.S. Bae. Neimark, H., W. Peters, B.L. Robinson and L.B. Stewart. 2005. Phylo- 2006a. Mariniflexile gromovii gen. nov., sp. nov., a gliding bacterium genetic analysis and description of Eperythrozoon coccoides, proposal isolated from the sea urchin Strongylocentrotus intermedius. Int. J. Syst. to transfer to the genus Mycoplasma as Mycoplasma coccoides comb. Evol. Microbiol. 56: 1635–1638. nov. and Request for an Opinion. Int. J. Syst. Evol. Microbiol. 55: Nedashkovskaya, O.I., S.B. Kim, M. Vancanneyt, A.M. Lysenko, D.S. 1385–1391. Shin, M.S. Park, K.H. Lee, W.J. Jung, N.I. Kalinovskaya, V.V. Mikhailov, Nevin, K.P., D.E. Holmes, T.L. Woodard, E.S. Hinlein, D.W. Ostendorf K.S. Bae and J. Swings. 2006b. Echinicola pacifica gen. nov., sp. nov., and D.R. Lovley. 2005. Geobacter bemidjiensis sp. nov. and Geobacter psy- a novel flexibacterium isolated from the sea urchin Strongylocentrotus chrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates. Int. intermedius. Int. J. Syst. Evol. Microbiol. 56: 953–958. J. Syst. Evol. Microbiol. 55: 1667–1674. APPENDIX 1 1401

Nevin, K.P., D.E. Holmes, T.L. Woodard, S.F. Covalla and D.R. Lovley. Ntougias, S., C. Fasseas and G.I. Zervakis. 2007a. Olivibacter sitiensis gen. 2007. Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes nov., sp. nov., isolated from alkaline olive-oil mill wastes in the region comb. nov. Int. J. Syst. Evol. Microbiol. 57: 463–466. of Sitia, Crete. Int. J. Syst. Evol. Microbiol. 57: 398–404. Nichols, C.M., J.P. Bowman and J. Guezennec. 2005. Olleya marilimosa Ntougias, S., G.I. Zervakis and C. Fasseas. 2007b. Halotalea alkalilenta gen. nov., sp. nov., an exopolysaccharide-producing marine bacte- gen. nov., sp. nov., a novel osmotolerant and alkalitolerant bacterium rium from the family Flavobacteriaceae, isolated from the Southern from alkaline olive mill wastes, and emended description of the fam- Ocean. Int. J. Syst. Evol. Microbiol. 55: 1557–1561. ily Halomonadaceae Franzmann et al. 1989, emend. Dobson and Fran- Niederberger, T.D., D.K. Götz, I.R. McDonald, R.S. Ronimus and H.W. zmann 1996. Int. J. Syst. Evol. Microbiol. 57: 1975–1983. Morgan. 2006. Ignisphaera aggregans gen. nov., sp. nov., a novel hyper- Nunan, L.M., D.V. Lightner, M.A. Oduori and G.E. Gasparich. 2005. thermophilic crenarchaeote isolated from hot springs in Rotorua and Spiroplasma penaei sp. nov., associated with mortalities in Penaeus Tokaanu, New Zealand. Int. J. Syst. Evol. Microbiol. 56: 965–971. vannamei, Pacific white shrimp. Int. J. Syst. Evol. Microbiol. 55: Nielsen, D.S., U. Schillinger, C.M. Franz, J. Bresciani, W. Amoa-Awua, 2317–2322. W.H. Holzapfel and M. Jakobsen. 2007. Lactobacillus ghanensis sp. Nunes, I., I. Tiago, A.L. Pires, M.S. da Costa and A. Veríssimo. 2006. nov., a motile lactic acid bacterium isolated from Ghanaian cocoa Paucisalibacillus globulus gen. nov., sp. nov., a Gram-positive bac- fermentations. Int. J. Syst. Evol. Microbiol. 57: 1468–1472. terium isolated from potting soil. Int. J. Syst. Evol. Microbiol. 56: Nielsen, M.B., K.U. Kjeldsen and K. Ingvorsen. 2006. Desulfitibacter 1841–1845. alkalitolerans gen. nov., sp. nov., an anaerobic, alkalitolerant, sulfite- Nunoura, T., H. Oida, M. Miyazaki, Y. Suzuki, K. Takai and K. Horiko- reducing bacterium isolated from a district heating plant. Int. J. Syst. shi. 2007a. Marinitoga okinawensis sp. nov., a novel thermophilic and Evol. Microbiol. 56: 2831–2836. anaerobic heterotroph isolated from a deep-sea hydrothermal field, Niggemyer, A., S. Spring, E. Stackebrandt and R.F. Rosenzweig. 2001. Southern Okinawa Trough. Int. J. Syst. Evol. Microbiol. 57: 467–471. Isolation and characterization of a novel AsV-reducing bacterium: Nunoura, T., H. Oida, M. Miyazaki, Y. Suzuki, K. Takai and K. Horiko- implications for arsenic mobilization and the genus Desulfitobacte- shi. 2007b. Desulfothermus okinawensis sp. nov., a thermophilic and rium. Appl. Environ. Microbiol. 67: 5568–5580. heterotrophic sulfate-reducing bacterium isolated from a deep-sea Nikitin, D.I., C. Strömpl, M.S. Oranskaya and W.R. Abraham. 2004. Phy- hydrothermal field. Int. J. Syst. Evol. Microbiol. 57: 2360–2364. logeny of the ring-forming bacterium Arcicella aquatica gen. nov., sp. Oduori, M.A., J.J. Lipa and G.E. Gasparich. 2005. Spiroplasma leucomae nov. (ex Nikitin et al. 1994), from a freshwater neuston biofilm. Int. J. sp. nov., isolated in Poland from white satin moth (Leucoma salicis L.) Syst. Evol. Microbiol. 54: 681–684. larvae. Int. J. Syst. Evol. Microbiol. 55: 2447–2450. Noel, G.R., N. Atibalentja and L.L. Domier. 2005. Emended description Ohta, H., R. Hattori, Y. Ushiba, H. Mitsui, M. Ito, H. Watanabe, A. of Pasteuria nishizawae. Int. J. Syst. Evol. Microbiol. 55: 1681–1685. Tonosaki and T. Hattori. 2004. Sphingomonas oligophenolica sp. nov., Nogi, Y., S. Hosoya, C. Kato and K. Horikoshi. 2004. 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Wieler. Onyenwoke, R.U., Y.J. Lee, S. Dabrowski, B.K. Ahring and J. Wiegel. 2005. Treponema berlinense sp. nov. and Treponema porcinum sp. nov., 2006. Reclassification of Thermoanaerobium acetigenum as Caldicellulo- novel spirochaetes isolated from porcine faeces. Int. J. Syst. Evol. siruptor acetigenus comb. nov. and emendation of the genus descrip- Microbiol. 55: 1675–1680. tion. Int. J. Syst. Evol. Microbiol. 56: 1391–1395. Normand, P. 2006. Geodermatophilaceae fam. nov., a formal description. Onyenwoke, R.U., V.V. Kevbrin, A.M. Lysenko and J. Wiegel. 2007. Ther- Int. J. Syst. Evol. Microbiol. 56: 2277–2278. moanaerobacter pseudethanolicus sp. nov., a thermophilic heterotrophic Nørskov-Lauritsen, N., B. Bruun and M. Kilian. 2005. Multilocus anaerobe from Yellowstone National Park. Int. J. Syst. Evol. Micro- sequence phylogenetic study of the genus Haemophilus with descrip- biol. 57: 2191–2193. tion of Haemophilus pittmaniae sp. nov. Int. J. Syst. Evol. Microbiol. 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Osman, S., M. Satomi and K. Venkateswaran. 2006. Paenibacillus Nowlan, B., M.S. Dodia, S.P. Singh and B.K. Patel. 2006. Bacillus okhensis pasadenensis sp. nov. and Paenibacillus barengoltzii sp. nov., isolated sp. nov., a halotolerant and alkalitolerant bacterium from an Indian from a spacecraft assembly facility. Int. J. Syst. Evol. Microbiol. 56: saltpan. Int. J. Syst. Evol. Microbiol. 56: 1073–1077. 1509–1514. 1402 APPENDIX 1

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Microbiol. 57: 146–150. coryneform bacterium isolated from human infections. J. Clin. Park, M.S., S.R. Jung, K.H. Lee, M.S. Lee, J.O. Do, S.B. Kim and K.S. Microbiol. 43: 3713–3717. Bae. 2006. Chryseobacterium soldanellicola sp. nov. and Chryseobacterium Pakdeeto, A., S. Tanasupawat, C. Thawai, S. Moonmangmee, T. Kudo taeanense sp. nov., isolated from roots of sand-dune plants. Int. J. Syst. and T. Itoh. 2007. Lentibacillus kapialis sp. nov., from fermented Evol. Microbiol. 56: 433–438. shrimp paste in Thailand. Int. J. Syst. Evol. Microbiol. 57: 364–369. Park, S.J., C.H. Kang, Y.D. Nam, J.W. Bae, Y.H. Park, Z.X. Quan, D.S. Pakdeeto, A., S. Tanasupawat, C. Thawai, S. Moonmangmee, T. Kudo Moon, H.J. Kim, D.H. Roh and S.K. Rhee. 2006. Oceanisphaera dong- and T. Itoh. 2007. Salinicoccus siamensis sp. nov., isolated from fer- haensis sp. nov., a halophilic bacterium from the East Sea, Korea. Int. mented shrimp paste in Thailand. Int. J. Syst. Evol. Microbiol. 57: J. Syst. Evol. 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Chun. 2006a. comb. nov. Int. J. Syst. Evol. Microbiol. 55: 1965–1972. Photobacterium ganghwense sp. nov., a halophilic bacterium isolated Pal, R., V.K. Bhasin and R. Lal. 2006. Proposal to reclassify [Sphingomo- from sea water. Int. J. Syst. Evol. Microbiol. 56: 745–749. nas] xenophaga Stolz et al. 2000 and [Sphingomonas] taejonensis Lee et al. Park, Y.D., H. Yi, K.S. Baik, C.N. Seong, K.S. Bae, E.Y. Moon and J. Chun. 2001 as Sphingobium xenophagum comb. nov. and Sphingopyxis taejonensis 2006b. Pseudomonas segetis sp. nov., isolated from soil. Int. J. Syst. Evol. comb. nov., respectively. Int. J. Syst. Evol. Microbiol. 56: 667–670. Microbiol. 56: 2593–2595. Palacios, L., D.R. Arahal, B. Reguera and I. Marín. 2006. Hoeflea alexan- Parshina, S.N., J. Sipma, Y. Nakashimada, A.M. Henstra, H. Smidt, A.M. drii sp. nov., isolated from the toxic dinoflagellate Alexandrium minu- Lysenko, P.N. Lens, G. Lettinga and A.J. Stams. 2005. Desulfotomaculum tum AL1V. Int. J. Syst. Evol. Microbiol. 56: 1991–1995. carboxydivorans sp. nov., a novel sulfate-reducing bacterium capable of Palleroni, N.J., A.M. Port, H.K. Chang and G.J. Zylstra. 2004. Hydrocarbon- growth at 100% CO. Int. J. Syst. Evol. Microbiol. 55: 2159–2165. iphaga effusa gen. nov., sp. nov., a novel member of the γ-Proteobacteria Partida-Martinez, L.P., I. Groth, I. Schmitt, W. Richter, M. Roth and C. active in alkane and aromatic hydrocarbon degradation. Int. J. Syst. Hertweck. 2007. Burkholderia rhizoxinica sp. nov. and Burkholderia endo- Evol. Microbiol. 54: 1203–1207. fungorum sp. nov., bacterial endosymbionts of the plant-pathogenic Pankratov, T.A., I.S. Kulichevskaya, W. Liesack and S.N. Dedysh. 2006. Iso- fungus Rhizopus microsporus. Int. J. Syst. Evol. Microbiol. 57: 2583– lation of aerobic, gliding, xylanolytic and laminarinolytic bacteria from 2590. acidic Sphagnum peatlands and emended description of Chitinophaga Pathom-aree, W., Y. Nogi, I.C. Sutcliffe, A.C. Ward, K. Horikoshi, A.T. arvensicola Kämpfer et al. 2006. Int. J. Syst. Evol. Microbiol. 56: 2761–2764. Bull and M. Goodfellow. 2006a. Williamsia marianensis sp. nov., a Pankratov, T.A., B.J. Tindall, W. Liesack and S.N. Dedysh. 2007. Muci- novel actinomycete isolated from the Mariana Trench. Int. J. Syst. laginibacter paludis gen. nov., sp. nov. and Mucilaginibacter gracilis sp. Evol. Microbiol. 56: 1123–1126. nov., pectin-, xylan- and laminarin-degrading members of the family Pathom-aree, W., Y. Nogi, I.C. Sutcliffe, A.C. Ward, K. Horikoshi, A.T. Sphingobacteriaceae from acidic Sphagnum peat bog. Int. J. Syst. Evol. Bull and M. Goodfellow. 2006b. Dermacoccus abyssi sp. nov., a piezo- Microbiol. 57: 2349–2354. tolerant actinomycete isolated from the Mariana Trench. Int. J. Syst. Pantůcek, R., I. Sedláček, P. Petráš, D. Koukalová, P. Švec, V. Štĕtina, M. Evol. Microbiol. 56: 1233–1237. Vancanneyt, L. Chrastinová, J. Vokurková, V. Růžičková, J. Doškař, Pathom-aree, W., Y. Nogi, A.C. Ward, K. Horikoshi, A.T. Bull and M. J. Swings and V. Hájek. 2005. Staphylococcus simiae sp. nov., isolated Goodfellow. 2006c. Dermacoccus barathri sp. nov. and Dermacoccus pro- from South American squirrel monkeys. Int. J. Syst. Evol. Microbiol. fundi sp. nov., novel actinomycetes isolated from deep-sea mud of the 55: 1953–1958. Mariana Trench. Int. J. Syst. Evol. Microbiol. 56: 2303–2307. Paper, W., U. Jahn, M.J. Hohn, M. Kronner, D.J. Näther, T. Burghardt, Pavan, M.E., R.J. Franco, J.M. Rodríguez, P. Gadaleta, S.L. Abbott, J.M. R. Rachel, K.O. Stetter and H. Huber. 2007. Ignicoccus hospitalis sp. Janda and J. Zorzópulos. 2005. Phylogenetic relationships of the nov., the host of ‘Nanoarchaeum equitans’. Int. J. Syst. Evol. Microbiol. genus Kluyvera: transfer of Enterobacter intermedius Izard et al. 1980 to 57: 803–808. the genus Kluyvera as Kluyvera intermedia comb. nov. and reclassifica- Park, D.J., S.G. Dastager, J.C. Lee, S.H. Yeo, J.H. Yoon and C.J. Kim. tion of Kluyvera cochleae as a later synonym of K. intermedia. Int. J. Syst. 2007. Shimazuella kribbensis gen. nov., sp. nov., a mesophilic represen- Evol. Microbiol. 55: 437–442. tative of the family Thermoactinomycetaceae. Int. J. Syst. Evol. Microbiol. Peak, K.K., K.E. Duncan, W. Veguilla, V.A. Luna, D.S. King, L. Heller, L. 57: 2660–2664. Heberlein-Larson, F. Reeves, A.C. Cannons, P. Amuso and J. Cattani. APPENDIX 1 1403

2007. Bacillus acidiceler sp. nov., isolated from a forensic specimen, Pinhassi, J., J.P. Bowman, O.I. Nedashkovskaya, I. Lekunberri, L. Gomez- containing Bacillus anthracis pX02 genes. Int. J. Syst. Evol. Microbiol. Consarnau and C. Pedrós-Alió. 2006. Leeuwenhoekiella blandensis sp. 57: 2031–2036. nov., a genome-sequenced marine member of the family Flavobacteri- Peçonek, J., C. Gruber, V. Gallego, A. Ventosa, H.J. Busse, P. Kämpfer, aceae. Int. J. Syst. Evol. Microbiol. 56: 1489–1493. C. Radax and H. Stan-Lotter. 2006. Reclassification of Pseudomonas Pinhassi, J., M.J. Pujalte, M.C. Macián, I. Lekunberri, J.M. González, beijerinckii Hof 1935 as Chromohalobacter beijerinckii comb. nov., and C. Pedrós-Alió and D.R. Arahal. 2007. Reinekea blandensis sp. nov., emended description of the species. Int. J. Syst. Evol. Microbiol. 56: a marine, genome-sequenced gammaproteobacterium. Int. J. Syst. 1953–1957. Evol. Microbiol. 57: 2370–2375. Pedersen, C. and S. Roos. 2004. Lactobacillus saerimneri sp. nov., isolated Pires, A.L., L. Albuquerque, I. Tiago, M.F. Nobre, N. Empadinhas, from pig faeces. Int. J. Syst. Evol. Microbiol. 54: 1365–1368. A. Veríssimo and M.S. da Costa. 2005. Meiothermus timidus sp. nov., Peix, A., R. Rivas, I. Santa-Regina, P.F. Mateos, E. Martínez-Molina, C. a new slightly thermophilic yellow-pigmented species. FEMS Micro- Rodríguez-Barrueco and E. Velázquez. 2004. Pseudomonas lutea sp. biol. Lett. 245: 39–45. nov., a novel phosphate-solubilizing bacterium isolated from the Pitcher, D.G., D. Windsor, H. Windsor, J.M. Bradbury, C. Yavari, J.S. rhizosphere of grasses. Int. J. Syst. Evol. Microbiol. 54: 847–850. Jensen, C. Ling and D. Webster. 2005. Mycoplasma amphoriforme sp. Peix, A., O. Berge, R. Rivas, A. Abril and E. Velázquez. 2005. Pseudomo- nov., isolated from a patient with chronic bronchopneumonia. Int. J. nas argentinensis sp. nov., a novel yellow pigment-producing bacterial Syst. Evol. Microbiol. 55: 2589–2594. species, isolated from rhizospheric soil in Cordoba, Argentina. Int. J. Plumb, J.J., C.M. Haddad, J.A. Gibson and P.D. Franzmann. 2007. Syst. Evol. Microbiol. 55: 1107–1112. Acidianus sulfidivorans sp. nov., an extremely acidophilic, thermo- Peix, A., R. Rivas, M.E. Trujillo, M. Vancanneyt, E. Velázquez and A. philic archaeon isolated from a solfatara on Lihir Island, Papua New Willems. 2005. Reclassification of Agrobacterium ferrugineum LMG 128 Guinea, and emendation of the genus description. Int. J. Syst. Evol. as Hoeflea marina gen. nov., sp. nov. Int. J. Syst. Evol. Microbiol. 55: Microbiol. 57: 1418–1423. 1163–1166. Poli, A., E. Esposito, L. Lama, P. Orlando, G. Nicolaus, F. De Appolo- Peix, A., A. Valverde, R. Rivas, J.M. Igual, M.H. Ramírez-Bahena, P.F. nia, A. Gambacorta and B. Nicolaus. 2006. Anoxybacillus amylolyticus Mateos, I. Santa-Regina, C. Rodríguez-Barrueco, E. Martínez-Molina sp. nov., a thermophilic amylase producing bacterium isolated from and E. Velázquez. 2007. Reclassification of Pseudomonas aurantiaca Mount Rittmann (Antarctica). Syst. Appl. Microbiol. 29: 300–307. as a synonym of Pseudomonas chlororaphis and proposal of three sub- Postec, A., C. Le Breton, M.L. Fardeau, F. Lesongeur, P. Pignet, J. Quer- species, P. chlororaphis subsp. chlororaphis subsp. nov., P. chlororaphis ellou, B. Ollivier and A. Godfroy. 2005. Marinitoga hydrogenitolerans subsp. aureofaciens subsp. nov., comb. nov. and P. chlororaphis subsp. sp. nov., a novel member of the order Thermotogales isolated from a aurantiaca subsp. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 57: black smoker chimney on the Mid-Atlantic Ridge. Int. J. Syst. Evol. 1286–1290. Microbiol. 55: 1217–1221. Peng, G., H. Wang, G. Zhang, W. Hou, Y. Liu, E.T. Wang and Z. Tan. Prabagaran, S.R., K. Suresh, R. Manorama, D. Delille and S. Shivaji. 2006. Azospirillum melinis sp. nov., a group of diazotrophs isolated from 2005. Marinomonas ushuaiensis sp. nov., isolated from coastal sea tropical molasses grass. Int. J. Syst. Evol. Microbiol. 56: 1263–1271. water in Ushuaia, Argentina, sub-Antarctica. Int. J. Syst. Evol. Micro- Perevalova, A.A., V.A. Svetlichny, I.V. Kublanov, N.A. Chernyh, N.A. biol. 55: 309–313. Kostrikina, T.P. Tourova, B.B. Kuznetsov and E.A. Bonch-Osmolovs- Prabahar, V., S. Dube, G.S.N. Reddy and S. Shivaji. 2004. Pseudonocardia kaya. 2005. Desulfurococcus fermentans sp. nov., a novel hyperther- antarctica sp. nov. an Actinomycetes from McMurdo Dry Valleys, Antarc- mophilic archaeon from a Kamchatka hot spring, and emended tica. Syst. Appl. Microbiol. 27: 66–71. description of the genus Desulfurococcus. Int. J. Syst. Evol. Microbiol. Prado, B., C. Lizama, M. Aguilera, A. Ramos-Cormenzana, S. Fuentes, V. 55: 995–999. Campos and M. Monteoliva-Sánchez. 2006. Chromohalobacter nigrande- Pérez-Ibarra, B.M., M.E. Flores and M. García-Varela. 2007. Isolation sensis sp. nov., a moderately halophilic, Gram-negative bacterium iso- and characterization of Bacillus thioparus sp. nov., chemolithoauto- lated from Lake Tebenquiche on the Atacama Saltern, Chile. Int. J. trophic, thiosulfate-oxidizing bacterium. FEMS Microbiol. Lett. 271: Syst. Evol. Microbiol. 56: 647–651. 289–296. Prakash, O. and R. Lal. 2006. Description of Sphingobium fuliginis sp. Perin, L., L. Martínez-Aguilar, G. Paredes-Valdez, J.I. Baldani, P. Estra- nov., a phenanthrene-degrading bacterium from a fly ash dumping da-de Los Santos, V.M. Reis and J. Caballero-Mellado. 2006. Burkhold- site, and reclassification of Sphingomonas cloacae as Sphingobium cloacae eria silvatlantica sp. nov., a diazotrophic bacterium associated with comb. nov. Int. J. Syst. Evol. Microbiol. 56: 2147–2152. sugar cane and maize. Int. J. Syst. Evol. Microbiol. 56: 1931–1937. Prakash, O., K. Kumari and R. Lal. 2007. Pseudomonas delhiensis sp. nov., Pikuta, E.V., D. Marsic, A. Bej, J. Tang, P. Krader and R.B. Hoover. 2005. from a fly ash dumping site of a thermal power plant. Int. J. Syst. Evol. Carnobacterium pleistocenium sp. nov., a novel psychrotolerant, faculta- Microbiol. 57: 527–531. tive anaerobe isolated from permafrost of the Fox Tunnel in Alaska. Pujalte, M.J., M.C. Macián, D.R. Arahal and E. Garay. 2005a. Stappia alba Int. J. Syst. Evol. Microbiol. 55: 473–478. sp. nov., isolated from Mediterranean oysters. Syst. Appl. Microbiol. Pikuta, E.V., R.B. Hoover, A.K. Bej, D. Marsic, W.B. Whitman, P.E. 28: 672–678. Krader and J. Tang. 2006a. Trichococcus patagoniensis sp. nov., a facul- Pujalte, M.J., M.C. Macián, D.R. Arahal and E. Garay. 2005b. Thalasso- tative anaerobe that grows at -5°C, isolated from penguin guano in bacter stenotrophicus Macián et al. 2005 is a later synonym of Jannaschia Chilean Patagonia. Int. J. Syst. Evol. Microbiol. 56: 2055–2062. cystaugens Adachi et al. 2004, with emended description of the genus Pikuta, E.V., T. Itoh, P. Krader, J. Tang, W.B. Whitman and R.B. Hoover. Thalassobacter. Int. J. Syst. Evol. Microbiol. 55: 1959–1963. 2006b. Anaerovirgula multivorans gen. nov., sp. nov., a novel spore- Pujalte, M.J., M.C. Macián, D.R. Arahal, W. Ludwig, K.H. Schleifer forming, alkaliphilic anaerobe isolated from Owens Lake, California, and E. Garay. 2005c. Nereida ignava gen. nov., sp. nov., a novel USA. Int. J. Syst. Evol. Microbiol. 56: 2623–2629. aerobic marine α-proteobacterium that is closely related to uncul- Pikuta, E.V., D. Marsic, T. Itoh, A.K. Bej, J. Tang, W.B. Whitman, J.D. tured Prionitis (alga) gall symbionts. Int. J. Syst. Evol. Microbiol. Ng, O.K. Garriott and R.B. Hoover. 2007. Thermococcus thioreducens sp. 55: 631–636. nov., a novel hyperthermophilic, obligately sulfur-reducing archaeon Pukall, R., P. Schumann, C. Schütte, R. Gols and M. Dicke. 2006. Acari- from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 57: comes phytoseiuli gen. nov., sp. nov., isolated from the predatory mite 1612–1618. Phytoseiulus persimilis. Int. J. Syst. Evol. Microbiol. 56: 465–469. Ping, X., Y. Takahashi, A. Seino, Y. Iwai and S. Ōmura. 2004. Streptomyces Qin, Q.-L., D.-L. Zhao, J. Wang, X.-L. Chen, H.-Y. Dang, T.-G. Li, Y.-Z. scabrisporus sp. nov. Int. J. Syst. Evol. Microbiol. 54: 577–581. Zhang and P.-J. Gao. 2007. Wangia profunda gen. nov., sp. nov., a novel 1404 APPENDIX 1

marine bacterium of the family Flavobacteriaceae isolated from south- a bacterium that degrades cyclic cyanobacterial hepatotoxins micro- ern Okinawa Trough deep-sea sediment. FEMS Microbiol. Lett. 271: cystins and nodularin. Int. J. Syst. Evol. Microbiol. 55: 1563–1568. 53–58. Rathgeber, C., N. Yurkova, E. Stackebrandt, P. Schumann, J.T. Beatty Qiu, F., Y. Huang, L. Sun, X. Zhang, Z. Liu and W. Song. 2007. Leifsonia and V. Yurkov. 2005. Roseicyclus mahoneyensis gen. nov., sp. nov., an ginsengi sp. nov., isolated from ginseng root. Int. J. Syst. Evol. Micro- aerobic phototrophic bacterium isolated from a meromictic lake. biol. 57: 405–408. Int. J. Syst. Evol. Microbiol. 55: 1597–1603. Qiu, Y.L., Y. Sekiguchi, S. Hanada, H. Imachi, I.C. Tseng, S.S. Cheng, A. Rea, S., J.P. Bowman, S. Popovski, C. Pimm and A.D. Wright. 2007. Meth- Ohashi, H. Harada and Y. Kamagata. 2006. Pelotomaculum terephthali- anobrevibacter millerae sp. nov. and Methanobrevibacter olleyae sp. nov., cum sp. nov. and Pelotomaculum isophthalicum sp. nov.: two anaerobic methanogens from the ovine and bovine rumen that can utilize for- bacteria that degrade phthalate isomers in syntrophic association with mate for growth. Int. J. Syst. Evol. Microbiol. 57: 450–456. hydrogenotrophic methanogens. Arch. Microbiol. 185: 172–182. Reddy, G.S. and F. García-Pichel. 2005. Dyadobacter crusticola sp. nov., Quan, Z.X., H.S. Bae, J.H. Baek, W.F. Chen, W.T. Im and S.T. Lee. 2005. from biological soil crusts in the Colorado Plateau, USA, and an Rhizobium daejeonense sp. nov. isolated from a cyanide treatment bio- emended description of the genus Dyadobacter Chelius and Triplett reactor. Int. J. Syst. Evol. Microbiol. 55: 2543–2549. 2000. Int. J. Syst. Evol. Microbiol. 55: 1295–1299. Quan, Z.X., W.T. Im and S.T. Lee. 2006. Azonexus caeni sp. nov., a deni- Reddy, G.S. and F. García-Pichel. 2007. Sphingomonas mucosissima sp. nov. trifying bacterium isolated from sludge of a wastewater treatment and Sphingomonas desiccabilis sp. nov., from biological soil crusts in the plant. Int. J. Syst. Evol. Microbiol. 56: 1043–1046. Colorado Plateau, USA. Int. J. Syst. Evol. Microbiol. 57: 1028–1034. Quan, Z.X., K.K. Kim, M.K. Kim, L. Jin and S.T. Lee. 2007. Chryseobacte- Reddy, G.S., G.I. Matsumoto, P. Schumann, E. Stackebrandt and S. rium caeni sp. nov., isolated from bioreactor sludge. Int. J. Syst. Evol. Shivaji. 2004. Psychrophilic pseudomonads from Antarctica: Pseudomo- Microbiol. 57: 141–145. nas antarctica sp. nov., Pseudomonas meridiana sp. nov. and Pseudomonas Quesada, T., M. Aguilera, J.A. Morillo, A. Ramos-Cormenzana and M. proteolytica sp. nov. Int. J. Syst. Evol. Microbiol. 54: 713–719. Monteoliva-Sánchez. 2007. Virgibacillus olivae sp. nov., isolated from Reddy, G.S., M. Nagy and F. García-Pichel. 2006. 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Microbiol. 55: 2093–2099. a sulfurous spring in Campania (Italy), and emended description of Rodríguez-Nava, V., A. Couble, C. Molinard, H. Sandoval, P. Boiron and Oceanobacillus oncorhynchi. Int. J. Syst. Evol. Microbiol. 56: 805–810. F. Laurent. 2004. Nocardia mexicana sp. nov., a new pathogen isolated Romano, I., A. Poli, I. Finore, F.J. Huertas, A. Gambacorta, S. Pellic- from human mycetomas. J. Clin. Microbiol. 42: 4530–4535. cione, G. Nicolaus, L. Lama and B. Nicolaus. 2007. Haloterrigena his- Rodríguez-Nava, V., Z.U. Khan, G. Potter, R.M. Kroppenstedt, P. Boiron panica sp. nov., an extremely halophilic archaeon from Fuente de and F. Laurent. 2007. Nocardia coubleae sp. nov., isolated from oil-con- Piedra, southern Spain. Int. J. Syst. Evol. Microbiol. 57: 1499–1503. taminated Kuwaiti soil. Int. J. Syst. Evol. Microbiol. 57: 1482–1486. Roos, S., L. Engstrand and H. Jonsson. 2005. Lactobacillus gastricus sp. Roh, S.W., Y.D. Nam, H.W. Chang, Y. Sung, K.H. Kim, H.J. 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Halomonas campaniensis sp. nov., a haloalkaliphilic bacterium Saha, P. and T. Chakrabarti. 2006b. Aeromonas sharmana sp. nov., isolated isolated from a mineral pool of Campania Region, Italy. Syst. Appl. from a warm spring. Int. J. Syst. Evol. Microbiol. 56: 1905–1909. Microbiol. 28: 610–618. Saha, P. and T. Chakrabarti. 2006c. Flavobacterium indicum sp. nov., Romano, I., L. Lama, B. Nicolaus, A. Gambacorta and A. Giordano. isolated from warm spring water in Assam, India. Int. J. Syst. Evol. 2005c. Bacillus saliphilus sp. nov., isolated from a mineral pool in Microbiol. 56: 2617–2621. Campania, Italy. Int. J. Syst. Evol. Microbiol. 55: 159–163. Saha, P., S. Krishnamurthi, S. Mayilraj, G.S. Prasad, T.C. Bora and T. Romano, I., L. Lama, B. Nicolaus, A. Gambacorta and A. Giordano. Chakrabarti. 2005a. Aquimonas voraii gen. nov., sp. nov., a novel gam- 2005d. Alkalibacillus filiformis sp. nov., isolated from a mineral pool in maproteobacterium isolated from a warm spring of Assam, India. Campania, Italy. Int. J. Syst. Evol. Microbiol. 55: 2395–2399. Int. J. Syst. Evol. Microbiol. 55: 1491–1495. APPENDIX 1 1407

Saha, P., A.K. Mondal, S. Mayilraj, S. Krishnamurthi, A. Bhattacharya Aquicella lusitana gen. nov., sp. nov., and Aquicella siphonis sp. nov. and T. Chakrabarti. 2005b. Paenibacillus assamensis sp. nov., a novel infect protozoa and require activated charcoal for growth in labora- bacterium isolated from a warm spring in Assam, India. Int. J. Syst. tory media. Appl. Environ. Microbiol. 69: 6533–6540. Evol. Microbiol. 55: 2577–2581. Sato, Y., H. Nishihara, M. Yoshida, M. Watanabe, J.D. Rondal, R.N. Con- Saintpierre-Bonaccio, D., H. Amir, R. Pineau, S. Lemriss and M. Good- cepcion and H. Ohta. 2006. Cupriavidus pinatubonensis sp. nov. and fellow. 2004a. Streptomyces ferralitis sp. nov., a novel streptomycete Cupriavidus laharis sp. nov., novel hydrogen-oxidizing, facultatively isolated from a New-Caledonian ultramafic soil. Int. J. Syst. Evol. chemolithotrophic bacteria isolated from volcanic mudflow deposits Microbiol. 54: 2061–2065. from Mt. Pinatubo in the Philippines. Int. J. Syst. Evol. Microbiol. Saintpierre-Bonaccio, D., L.A. Maldonado, H. Amir, R. Pineau and M. 56: 973–978. Goodfellow. 2004b. Nocardia neocaledoniensis sp. nov., a novel actino- Satomi, M., B. Kimura, M. Hayashi, M. Okuzumi and T. Fujii. 2004. mycete isolated from a New-Caledonian brown hypermagnesian Marinospirillum insulare sp. nov., a novel halophilic helical bacterium ultramafic soil. Int. J. Syst. Evol. Microbiol. 54: 599–603. isolated from kusaya gravy. Int. J. Syst. Evol. Microbiol. 54: 163–167. Saintpierre-Bonaccio, D., H. Amir, R. Pineau, G.Y. Tan and M. Goodfel- Satomi, M., M.T. La Duc and K. Venkateswaran. 2006a. Bacillus safensis low. 2005. Amycolatopsis plumensis sp. nov., a novel bioactive actino- sp. nov., isolated from spacecraft and assembly-facility surfaces. Int. J. mycete isolated from a New-Caledonian brown hypermagnesian Syst. Evol. Microbiol. 56: 1735–1740. ultramafic soil. Int. J. Syst. Evol. Microbiol. 55: 2057–2061. Satomi, M., B.F. Vogel, L. Gram and K. Venkateswaran. 2006b. Shewanella Sakamoto, M. and Y. Benno. 2006. Reclassification of Bacteroides dis- hafniensis sp. nov. and Shewanella morhuae sp. nov., isolated from marine tasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides fish of the Baltic Sea. Int. J. Syst. Evol. Microbiol. 56: 243–249. distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. Satomi, M., B.F. Vogel, K. Venkateswaran and L. Gram. 2007. Descrip- and Parabacteroides merdae comb. nov. Int. J. Syst. Evol. Microbiol. 56: tion of Shewanella glacialipiscicola sp. nov. and Shewanella algidipisci- 1599–1605. cola sp. nov., isolated from marine fish of the Danish Baltic Sea, and Sakamoto, M., M. Suzuki, Y. Huang, M. Umeda, I. Ishikawa and Y. proposal that Shewanella affinis is a later heterotypic synonym of She- Benno. 2004. Prevotella shahii sp. nov. and Prevotella salivae sp. nov., wanella colwelliana. Int. J. Syst. Evol. Microbiol. 57: 347–352. isolated from the human oral cavity. Int. J. Syst. Evol. Microbiol. 54: Savage, K.N., L.R. Krumholz, A. Oren and M.S. Elshahed. 2007. Halad- 877–883. aptatus paucihalophilus gen. nov., sp. nov., a halophilic archaeon iso- Sakamoto, M., Y. Huang, M. Umeda, I. Ishikawa and Y. Benno. 2005a. lated from a low-salt, sulfide-rich spring. Int. J. Syst. Evol. Microbiol. Prevotella multiformis sp. nov., isolated from human subgingival 57: 19–24. plaque. Int. J. Syst. Evol. Microbiol. 55: 815–819. Savic, M., I. Bratic and B. Vasiljevic. 2007. Streptomyces durmitorensis sp. Sakamoto, M., M. Umeda, I. Ishikawa and Y. Benno. 2005b. Prevotella nov., a producer of an FK506-like immunosuppressant. Int. J. Syst. multisaccharivorax sp. nov., isolated from human subgingival plaque. Evol. Microbiol. 57: 2119–2124. Int. J. Syst. Evol. Microbiol. 55: 1839–1843. Sawabe, T., K. Hayashi., J. Moriwaki, Y. Fukui, F.L. Thompson, J. Swings Sakamoto, M., M. Kitahara and Y. Benno. 2007a. Parabacteroides johnsonii and R. Christen. 2004a. Vibrio neonatus sp. nov. and Vibrio ezurae sp. sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 57: nov. isolated from the gut of Japanese abalones. Syst. Appl. Micro- 293–296. biol. 27: 527–534. Sakamoto, M., P.T. Lan and Y. Benno. 2007b. Barnesiella viscericola gen. Sawabe, T., K. Hayashi, J. Moriwaki, F.L. Thompson, J. Swings, P. Potin, nov., sp. nov., a novel member of the family Porphyromonadaceae R. Christen and Y. Ezura. 2004b. Vibrio gallicus sp. nov., isolated from isolated from chicken caecum. Int. J. Syst. Evol. Microbiol. 57: 342– the gut of the French abalone Haliotis tuberculata. Int. J. Syst. Evol. 346. Microbiol. 54: 843–846. Sakamoto, M., K. Ohkusu, T. Masaki, H. Kako, T. Ezaki and Y. Benno. Sawabe, T., Y. Fujimura, K. Niwa and H. Aono. 2007. Vibrio comitans sp. 2007c. Prevotella pleuritidis sp. nov., isolated from pleural fluid. Int. J. nov., Vibrio rarus sp. nov. and Vibrio inusitatus sp. nov., from the gut Syst. Evol. Microbiol. 57: 1725–1728. of the abalones Haliotis discus discus, H. gigantea, H. madaka and H. Sakuma, K., M. Kitahara, R. Kibe, M. Sakamoto and Y. Benno. 2006. rufescens. Int. J. Syst. Evol. Microbiol. 57: 916–922. Clostridium glycyrrhizinilyticum sp. nov., a glycyrrhizin-hydrolysing Schaad, N.W., E. Postnikova, G. Lacy, A. Sechler, I. Agarkova, P.E. bacterium isolated from human faeces. Microbiol. Immunol. 50: Stromberg, V.K. Stromberg and A.K. Vidaver. 2006. Emended classi- 481–485. fication of xanthomonad pathogens on citrus. Syst. Appl. Microbiol. Samson, R., J.B. Legendre, R. Christen, M. Fischer-Le Saux, W. Achouak 29: 690–695. and L. Gardan. 2005. Transfer of Pectobacterium chrysanthemi (Burk- Schäffer, C., W.L. Franck, A. Scheberl, P. Kosma, T.R. McDermott and holder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the P. Messner. 2004. Classification of isolates from locations in Austria genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya and Yellowstone National Park as Geobacillus tepidamans sp. nov. Int. J. paradisiaca comb. nov. and delineation of four novel species, Dickeya Syst. Evol. Microbiol. 54: 2361–2368. dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. Scheirlinck, I., R. Van der Meulen, A. Van Schoor, I. Cleenwerck, G. and Dickeya zeae sp. nov. Int. J. Syst. Evol. Microbiol. 55: 1415–1427. Huys, P. Vandamme, L. De Vuyst and M. Vancanneyt. 2007a. Lacto- Sánchez, M.M., D. Fritze, A. Blanco, C. Spröer, B.J. Tindall, P. Schu- bacillus namurensis sp. nov., isolated from a traditional Belgian sour- mann, R.M. Kroppenstedt, P. Diaz and F.I. Pastor. 2005. Paenibacillus dough. Int. J. Syst. Evol. Microbiol. 57: 223–227. barcinonensis sp. nov., a xylanase-producing bacterium isolated from Scheirlinck, I., R. Van der Meulen, A. Van Schoor, G. Huys, P. Van- a rice field in the Ebro River delta. Int. J. Syst. Evol. Microbiol. 55: damme, L. De Vuyst and M. Vancanneyt. 2007b. Lactobacillus crusto- 935–939. rum sp. nov., isolated from two traditional Belgian wheat sourdoughs. Sánchez-Porro, C., H. Tokunaga, M. Tokunaga and A. Ventosa. 2007. Int. J. Syst. Evol. Microbiol. 57: 1461–1467. Chromohalobacter japonicus sp. nov., a moderately halophilic bacterium Scheldeman, P., K. Goossens, M. Rodríguez-Díaz, A. Pil, J. Goris, L. Her- isolated from a Japanese salty food. Int. J. Syst. Evol. Microbiol. 57: man, P. De Vos, N.A. Logan and M. Heyndrickx. 2004a. Paenibacillus 2262–2266. lactis sp. nov., isolated from raw and heat-treated milk. Int. J. Syst. Santini, J.M., I.C. Streimann and R.N. vanden Hoven. 2004. Bacillus Evol. Microbiol. 54: 885–891. macyae sp. nov., an arsenate-respiring bacterium isolated from an Scheldeman, P., M. Rodríguez-Díaz, J. Goris, A. Pil, E. De Clerck, L. Australian gold mine. Int. J. Syst. Evol. Microbiol. 54: 2241–2244. Herman, P. De Vos, N.A. Logan and M. Heyndrickx. 2004b. Bacillus Santos, P., I. Pinhal, F.A. Rainey, N. Empadinhas, J. Costa, B. Fields, R. farraginis sp. nov., Bacillus fortis sp. nov. and Bacillus fordii sp. nov., Benson, A. Veríssimo and M.S. da Costa. 2003. Gamma-Proteobacteria isolated at dairy farms. Int. J. Syst. Evol. Microbiol. 54: 1355–1364. 1408 APPENDIX 1

Scheuermayer, M., T.A. Gulder, G. Bringmann and U. Hentschel. 2006. Shashidhar, R. and J.R. Bandekar. 2006. Deinococcus mumbaiensis sp. nov., Rubritalea marina gen. nov., sp. nov., a marine representative of the a radiation-resistant pleomorphic bacterium isolated from Mumbai, phylum ‘Verrucomicrobia’, isolated from a sponge (Porifera). Int. J. Syst. India. FEMS Microbiol. Lett. 254: 275–280. Evol. Microbiol. 56: 2119–2124. Shelobolina, E.S., S.A. Sullivan, K.R. O’neill, K.P. Nevin and D.R. Lov- Schinsky, M.F., R.E. Morey, A.G. Steigerwalt, M.P. Douglas, R.W. Wil- ley. 2004. Isolation, characterization, and U(VI)-reducing potential son, M.M. Floyd, W.R. Butler, M.I. Daneshvar, B.A. Brown-Elliott, of a facultatively anaerobic, acid-resistant bacterium from low-pH, R.J. Wallace, Jr., M.M. McNeil, D.J. Brenner and J.M. Brown. 2004. nitrate- and U(VI)-contaminated subsurface sediment and descrip- Taxonomic variation in the Mycobacterium fortuitum third biovariant tion of Salmonella subterranea sp. nov. Appl. Environ. Microbiol. 70: complex: description of Mycobacterium boenickei sp. nov., Mycobacterium 2959–2965. houstonense sp. nov., Mycobacterium neworleansense sp. nov. and Myco- Shelobolina, E.S., K.P. Nevin, J.D. Blakeney-Hayward, C.V. Johnsen, bacterium brisbanense sp. nov. and recognition of Mycobacterium porci- T.W. Plaia, P. Krader, T. Woodard, D.E. Holmes, C.G. Vanpraagh and num from human clinical isolates. Int. J. Syst. Evol. Microbiol. 54: D.R. Lovley. 2007. Geobacter pickeringii sp. nov., Geobacter argillaceus sp. 1653–1667. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsur- Schippers, A., K. Bosecker, C. Spröer and P. Schumann. 2005a. Microbac- face kaolin lenses. Int. J. Syst. Evol. Microbiol. 57: 126–135. terium oleivorans sp. nov. and Microbacterium hydrocarbonoxydans sp. Shen, F.T., P. Kämpfer, C.C. Young, W.A. Lai and A.B. Arun. 2005. Chry- nov., novel crude-oil-degrading Gram-positive bacteria. Int. J. Syst. seobacterium taichungense sp. nov., isolated from contaminated soil. Evol. Microbiol. 55: 655–660. Int. J. Syst. Evol. Microbiol. 55: 1301–1304. Schippers, A., P. Schumann and C. Spröer. 2005b. Nocardioides oleivorans Shen, F.T., M. Goodfellow, A.L. Jones, Y.P. Chen, A.B. Arun, W.A. Lai, sp. nov., a novel crude-oil-degrading bacterium. Int. J. Syst. Evol. P.D. Rekha and C.C. Young. 2006. Gordonia soli sp. nov., a novel Microbiol. 55: 1501–1504. actinomycete isolated from soil. Int. J. Syst. Evol. Microbiol. 56: Schleheck, D., B.J. Tindall, R. Rosselló-Mora and A.M. Cook. 2004. 2597–2601. Parvibaculum lavamentivorans gen. nov., sp. nov., a novel heterotroph Shen, Z., S. Xu, F.E. Dewhirst, B.J. Paster, J.A. Pena, I.M. Modlin, M. that initiates catabolism of linear alkylbenzenesulfonate. Int. J. Syst. Kidd and J.G. Fox. 2005. A novel enterohepatic Helicobacter species Evol. Microbiol. 54: 1489–1497. ‘Helicobacter mastomyrinus’ isolated from the liver and intestine of Schlesner, H., C. Rensmann, B.J. Tindall, D. Gade, R. Rabus, S. Pfeiffer rodents. Helicobacter 10: 59–70. and P. Hirsch. 2004. Taxonomic heterogeneity within the Planctomy- Sheu, S.Y., K.Y. Lin, J.H. Chou, P.S. Chang, A.B. Arun, C.C. Young cetales as derived by DNA-DNA hybridization, description of Rhodop- and W.M. Chen. 2007. Tenacibaculum litopenaei sp. nov., isolated irellula baltica gen. nov., sp. nov., transfer of Pirellula marina to the from a shrimp mariculture pond. Int. J. Syst. Evol. Microbiol. 57: genus Blastopirellula gen. nov. as Blastopirellula marina comb. nov. and 1148–1153. emended description of the genus Pirellula. Int. J. Syst. Evol. Micro- Shewmaker, P.L., A.G. Steigerwalt, R.E. Morey, M. da G.S Carvalho, J.A. biol. 54: 1567–1580. Elliott, K. Joyce, T.J. Barrett, L.M. Teixeira and R.R. Facklam. 2004. Schmidt, M., A. Priemé and P. Stougaard. 2006. Rhodonellum psychrophi- Vagococcus carniphilus sp. nov., isolated from ground beef. Int. J. Syst. lum gen. nov., sp. nov., a novel psychrophilic and alkaliphilic bacte- Evol. Microbiol. 54: 1505–1510. rium of the phylum Bacteroidetes isolated from Greenland. Int. J. Syst. Shewmaker, P.L., A.C. Camus, T. Bailiff, A.G. Steigerwalt, R.E. Morey Evol. Microbiol. 56: 2887–2892. and M. da G. Carvalho. 2007. Streptococcus ictaluri sp. nov., isolated Schumann, P., X. Cui, E. Stackebrandt, R.M. Kroppenstedt, L. Xu and from Channel Catfish Ictalurus punctatus broodstock. Int. J. Syst. Evol. C. Jiang. 2004. Jonesia quinghaiensis sp. nov., a new member of the Microbiol. 57: 1603–1606. suborder Micrococcineae. Int. J. Syst. Evol. Microbiol. 54: 2181–2184. Shieh, W.Y., Y.T. Lin and W.D. Jean. 2004. Pseudovibrio denitrificans gen. Sekiguchi, Y., H. Imachi, A. Susilorukmi, M. Muramatsu, A. Ohashi, H. nov., sp. nov., a marine, facultatively anaerobic, fermentative bac- Harada, S. Hanada and Y. Kamagata. 2006. Tepidanaerobacter syntrophicus terium capable of denitrification. Int. J. Syst. Evol. Microbiol. 54: gen. nov., sp. nov., an anaerobic, moderately thermophilic, syntrophic 2307–2312. alcohol- and lactate-degrading bacterium isolated from thermophilic Shimomura, K., S. Kaji and A. Hiraishi. 2005. Chryseobacterium shigense digested sludges. Int. J. Syst. Evol. Microbiol. 56: 1621–1629. sp. nov., a yellow-pigmented, aerobic bacterium isolated from a lactic Semêdo, L.T., R.C. Gomes, A.A. Linhares, G.F. Duarte, R.P. Nascimento, acid beverage. Int. J. Syst. Evol. Microbiol. 55: 1903–1906. A.S. Rosado, M. Margis-Pinheiro, R. Margis, K.R. Silva, C.S. Alviano, Shivaji, S., G.S.N. Reddy, P.U.M. Raghavan, N.B. Sarita and D. Delille. G.P. Manfio, R.M. Soares, L.F. Linhares and R.R. Coelho. 2004. Strep- 2004. Psychrobacter salsus sp. nov. and Psychrobacter adeliensis sp. nov. tomyces drozdowiczii sp. nov., a novel cellulolytic streptomycete from isolated from fast ice from Adelie Land, Antarctica. Syst. Appl. Micro- soil in Brazil. Int. J. Syst. Evol. Microbiol. 54: 1323–1328. biol. 27: 628–635. Seo, H.J., S.S. Bae, J.H. Lee and S.J. Kim. 2005a. Photobacterium frigid- Shivaji, S., P. Chaturvedi, G.S. Reddy and K. Suresh. 2005a. Pedobacter iphilum sp. nov., a psychrophilic, lipolytic bacterium isolated from himalayensis sp. nov., from the Hamta glacier located in the Hima- deep-sea sediments of Edison Seamount. Int. J. Syst. Evol. Microbiol. layan mountain ranges of India. Int. J. Syst. Evol. Microbiol. 55: 55: 1661–1666. 1083–1088. Seo, H.J., S.S. Bae, S.H. Yang, J.H. Lee and S.J. Kim. 2005b. Photobac- Shivaji, S., P. Gupta, P. Chaturvedi, K. Suresh and D. Delille. 2005b. terium aplysiae sp. nov., a lipolytic marine bacterium isolated from Marinobacter maritimus sp. nov., a psychrotolerant strain isolated from eggs of the sea hare Aplysia kurodai. Int. J. Syst. Evol. Microbiol. 55: sea water off the subantarctic Kerguelen islands. Int. J. Syst. Evol. 2293–2296. Microbiol. 55: 1453–1456. Seo, J.P. and S.D. Lee. 2006. Nocardia harenae sp. nov., an actinomy- Shivaji, S., G.S. Reddy, K. Suresh, P. Gupta, S. Chintalapati, P. Schu- cete isolated from beach sand. Int. J. Syst. Evol. Microbiol. 56: mann, E. Stackebrandt and G.I. Matsumoto. 2005c. Psychrobacter vallis 2203–2207. sp. nov. and Psychrobacter aquaticus sp. nov., from Antarctica. Int. J. Seo, J.P., Y.W. Yun and S.D. Lee. 2007. Nocardia speluncae sp. nov., iso- Syst. Evol. Microbiol. 55: 757–762. lated from a cave. Int. J. Syst. Evol. Microbiol. 57: 2932–2935. Shivaji, S., K. Suresh, P. Chaturvedi, S. Dube and S. Sengupta. 2005d. Sessitsch, A., T. Coenye, A.V. Sturz, P. Vandamme, E.A. Barka, J.F. Salles, Bacillus arsenicus sp. nov., an arsenic-resistant bacterium isolated J.D. Van Elsas, D. Faure, B. Reiter, B.R. Glick, G. Wang-Pruski and from a siderite concretion in West Bengal, India. Int. J. Syst. Evol. J. Nowak. 2005. Burkholderia phytofirmans sp. nov., a novel plant-asso- Microbiol. 55: 1123–1127. ciated bacterium with plant-beneficial properties. Int. J. Syst. Evol. Shivaji, S., P. Chaturvedi, K. Suresh, G.S. Reddy, C.B. Dutt, M. Wain- Microbiol. 55: 1187–1192. wright, J.V. Narlikar and P.M. Bhargava. 2006. Bacillus aerius sp. nov., APPENDIX 1 1409

Bacillus aerophilus sp. nov., Bacillus stratosphericus sp. nov. and Bacillus Soddell, J.A., F.M. Stainsby, K.L. Eales, R.M. Kroppenstedt, R.J. Seviour altitudinis sp. nov., isolated from cryogenic tubes used for collect- and M. Goodfellow. 2006a. Millisia brevis gen. nov., sp. nov., an actino- ing air samples from high altitudes. Int. J. Syst. Evol. Microbiol. 56: mycete isolated from activated sludge foam. Int. J. Syst. Evol. Micro- 1465–1473. biol. 56: 739–744. Shivaji, S., B. Bhadra, R.S. Rao, P. Chaturvedi, P.K. Pindi and C. Raghu- Soddell, J.A., F.M. Stainsby, K.L. Eales, R.J. Seviour and M. Goodfellow. kumar. 2007. Microbacterium indicum sp. nov., isolated from a deep-sea 2006b. Gordonia defluvii sp. nov., an actinomycete isolated from acti- sediment sample from the Chagos Trench, Indian Ocean. Int. J. Syst. vated sludge foam. Int. J. Syst. Evol. Microbiol. 56: 2265–2269. Evol. Microbiol. 57: 1819–1822. Sohn, J.H., K.K. Kwon, J.H. Kang, H.B. Jung and S.J. Kim. 2004a. Shlimon, A.G., M.W. Friedrich, H. Niemann, N.B. Ramsing and K. Fin- Novosphingobium pentaromativorans sp. nov., a high-molecular-mass ster. 2004. Methanobacterium aarhusense sp. nov., a novel methanogen polycyclic aromatic hydrocarbon-degrading bacterium isolated from isolated from a marine sediment (Aarhus Bay, Denmark). Int. J. Syst. estuarine sediment. Int. J. Syst. Evol. Microbiol. 54: 1483–1487. Evol. Microbiol. 54: 759–763. Sohn, J.H., J.H. Lee, H. Yi, J. Chun, K.S. Bae, T.Y. Ahn and S.J. Kim. Shukla, S.K., K.A. Bernard, M. Harney, D. N. Frank and K.D. Reed. 2004b. Kordia algicida gen. nov., sp. nov., an algicidal bacterium iso- 2003. Corynebacterium nigricans sp. nov.: proposed name for a black- lated from red tide. Int. J. Syst. Evol. Microbiol. 54: 675–680. pigmented Corynebacterium species recovered from the human female Sokolova, T.G., J.M. González, N.A. Kostrikina, N.A. Chernyh, T.V. Slepova, urogenital tract. J. Clin. Microbiol. 41: 4353–4358. E.A. 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Bifidobac- hydrogenogenic bacterium from a hot spring of the Lake Baikal terium psychraerophilum sp. nov. and Aeriscardovia aeriphila gen. nov., area. Int. J. Syst. Evol. Microbiol. 55: 2069–2073. sp. nov., isolated from a porcine caecum. Int. J. Syst. Evol. Microbiol. Sokolova, T., J. Hanel, R.U. Onyenwoke, A.-L. Reysenbach, A. Banta, 54: 401–406. R. Geyer, J.M. González, W.B. Whitman and J. Wiegel. 2007. Novel Singh, N., M.M. Kendall, Y. Liu and D.R. Boone. 2005. Isolation and chemolithotrophic, thermophilic, anaerobic bacteria Thermolitho- characterization of methylotrophic methanogens from anoxic bacter ferrireducens gen. nov., sp. nov. and Thermolithobacter carboxydiv- marine sediments in Skan Bay, Alaska: description of Methanococcoides orans sp. nov. Extremophiles 11: 145–157. alaskense sp. nov., and emended description of Methanosarcina baltica. Somvanshi, V.S., E. Lang, B. Sträubler, C. Spröer, P. Schumann, S. Gan- Int. J. Syst. Evol. Microbiol. 55: 2531–2538. guly, A.K. 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Slobodova and T.P. teobacterium isolated from a eutrophic freshwater pond. Int. J. Syst. Tourova. 2007. Novel facultative anaerobic acidotolerant Telma- Evol. Microbiol. 57: 2125–2128. tospirillum siberiense gen. nov. sp. nov. isolated from mesotrophic fen. Song, J., B.Y. Kim, S.B. Hong, H.S. Cho, K. Sohn, J. Chun and J.W. Suh. Syst. Appl. Microbiol. 30: 213–220. 2004. Kribbella solani sp. nov. and Kribbella jejuensis sp. nov., isolated Sjöstedt, A.B. 2005. Family III. Francisellaceae fam. nov. In Brenner, from potato tuber and soil in Jeju, Korea. Int. J. Syst. Evol. Microbiol. Krieg, Staley and Garrity (Editors), Bergey’s Manual of Systematic 54: 1345–1348. Bacteriology, 2nd Edition, Volume 2 (The Proteobacteria), Part B (The Song, L., W.J. Li, Q.L. Wang, G.Z. Chen, Y.S. Zhang and L.H. Xu. 2005. Gammaproteobacteria), Springer, New York, pp. 199–200. Jiangella gansuensis gen. nov., sp. nov., a novel actinomycete from a des- Slepova, T.V., T.G. Sokolova, A.M. Lysenko, T.P. 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H2-producing thermophilic bacterium from a Kamchatka hot spring. of human intestinal origin. J. Clin. Microbiol. 43: 4522–4527. Int. J. Syst. Evol. Microbiol. 56: 797–800. Song, Y., E. Könönen, M. Rautio, C. Liu, A. Bryk, E. Eerola and S.M. Slobodkin, A.I., T.G. Sokolova, A.M. Lysenko and J. Wiegel. 2006a. Finegold. 2006. Alistipes onderdonkii sp. nov. and Alistipes shahii sp. Reclassification of Thermoterrabacterium ferrireducens as Carboxydother- nov., of human origin. Int. J. Syst. Evol. Microbiol. 56: 1985–1990. mus ferrireducens comb. nov., and emended description of the genus Song, Y.L., C.X. Liu, M. McTeague and S.M. Finegold. 2004a. “Bacte- Carboxydothermus. Int. J. Syst. Evol. Microbiol. 56: 2349–2351. roides nordii” sp. nov. and “Bacteroides salyersae” sp. nov. isolated from Slobodkin, A.I., T.P. Tourova, N.A. Kostrikina, A.M. Lysenko, K.E. clinical specimens of human intestinal origin. J. Clin. Microbiol. 42: German, E.A. Bonch-Osmolovskaya and N.K. Birkeland. 2006b. 5565–5570. Tepidimicrobium ferriphilum gen. nov., sp. nov., a novel moderately Song, Y.L., C.X. Liu, M. McTeague., P. Summanen and S.M. Finegold. thermophilic, Fe(III)-reducing bacterium of the order Clostridiales. 2004b. Clostridium bartlettii sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 56: 369–372. Anaerobe 10: 179–184. Šmerda, J., I. Sedláček, Z. Páčová, E. Durnová, A. Smíšková and L. Havel. Sorokin, D.Y. and B.J. Tindall. 2006. The status of the genus name 2005. Paenibacillus mendelii sp. nov., from surface-sterilized seeds of Halovibrio Fendrich 1989 and the identity of the strains Pseudomonas Pisum sativum L. Int. J. Syst. Evol. Microbiol. 55: 2351–2354. halophila DSM 3050 and Halomonas variabilis DSM 3051. Request for Šmerda, J., I. Sedláček, Z. Páčová, E. Krejčí and L. Havel. 2006. Paeniba- an Opinion. Int. J. Syst. Evol. Microbiol. 56: 487–489. cillus sepulcri sp. nov., isolated from biodeteriorated mural paintings Sorokin, D.Y., T.P. Tourova, A.N. Antipov, G. Muyzer and J.G. Kuenen. 2004. in the Servilia tomb. Int. J. Syst. Evol. Microbiol. 56: 2341–2344. Anaerobic growth of the haloalkaliphilic denitrifying sulfur-oxidizing 1410 APPENDIX 1

bacterium Thialkalivibrio thiocyanodenitrificans sp. nov. with thiocya- Srinivas, T.N., P.A. Kumar, C. Sasikala, Ch V. Ramana, J. Süling and J.F. nate. Microbiology 150: 2435–2442. Imhoff. 2006. Rhodovulum marinum sp. nov., a novel phototrophic Sorokin, D.Y., T.P. Tourova and G. Muyzer. 2005a. Citreicella thiooxidans purple non-sulfur alphaproteobacterium from marine tides of gen. nov., sp. nov., a novel lithoheterotrophic sulfur-oxidizing bacte- Visakhapatnam, India. Int. J. Syst. Evol. Microbiol. 56: 1651–1656. rium from the Black Sea. Syst. Appl. Microbiol. 28: 679–687. Srinivas, T.N., P.A. Kumar, C. Sasikala and Ch V. Ramana. 2007a. Rhodo- Sorokin, D.Y., T.P. Tourova, E.M. Spiridonova, F.A. Rainey and G. Muyzer. vulum imhoffii sp. nov. Int. J. Syst. Evol. Microbiol. 57: 228–232. 2005b. Thioclava pacifica gen. nov., sp. nov., a novel facultatively auto- Srinivas, T.N., P.A. Kumar, C. Sasikala, Ch V. Ramana and J.F. Imhoff. trophic, marine, sulfur-oxidizing bacterium from a near-shore sulfidic 2007b. Rhodobium gokarnense sp. nov., a novel phototrophic alp- hydrothermal area. Int. J. Syst. Evol. Microbiol. 55: 1069–1075. haproteobacterium from a saltern. Int. J. Syst. Evol. Microbiol. 57: Sorokin, D.Y., T.P. Tourova, E.A. Galinski, C. Belloch and B.J. Tindall. 932–935. 2006a. Extremely halophilic denitrifying bacteria from hypersaline Srinivas, T.N., P.A. Kumar, C. Sasikala, Ch V. Ramana and J.F. Imhoff. inland lakes, Halovibrio denitrificans sp. nov. and Halospina denitrificans 2007c. Rhodovulum visakhapatnamense sp. nov. Int. J. Syst. Evol. Micro- gen. nov., sp. nov., and evidence that the genus name Halovibrio Fen- biol. 57: 1762–1764. drich 1989 with the type species Halovibrio variabilis should be associ- Srinivas, T.N., P.A. Kumar, C. Sasikala, Ch V. Ramana and J.F. Imhoff. ated with DSM 3050. Int. J. Syst. Evol. Microbiol. 56: 379–388. 2007d. Rhodobacter vinaykumarii sp. nov., a marine phototrophic alp- Sorokin, D.Y., T.P. Tourova, T.V. Kolganova, E.M. Spiridonova, I.A. Berg and haproteobacterium from tidal waters, and emended description of G. Muyzer. 2006b. Thiomicrospira halophila sp. nov., a moderately halo- the genus Rhodobacter. Int. J. Syst. Evol. Microbiol. 57: 1984–1987. philic, obligately chemolithoautotrophic, sulfur-oxidizing bacterium Srisukchayakul, P., C. Suwanachart, Y. Sangnoi, A. Kanjana-Opas, S. from hypersaline lakes. Int. J. Syst. Evol. Microbiol. 56: 2375–2380. Hosoya, A. Yokota and V. Arunpairojana. 2007. Rapidithrix thailandica Sorokin, D.Y., M. Foti, H.C. Pinkart and G. Muyzer. 2007a. Sulfur- gen. nov., sp. nov., a marine gliding bacterium isolated from samples oxidizing bacteria in Soap Lake (Washington State), a meromictic, collected from the Andaman sea, along the southern coastline of haloalkaline lake with an unprecedented high sulfide content. Appl. Thailand. Int. J. Syst. Evol. Microbiol. 57: 2275–2279. Environ. Microbiol. 73: 451–455. Stach, J.E., L.A. Maldonado, A.C. Ward, A.T. Bull and M. Goodfellow. Sorokin, D.Y., T.P. Tourova, E.Y. Bezsoudnova, A. Pol and G. Muyzer. 2004. Williamsia maris sp. nov., a novel actinomycete isolated from the 2007b. Denitrification in a binary culture and thiocyanate metabo- Sea of Japan. Int. J. Syst. Evol. Microbiol. 54: 191–194. lism in Thiohalophilus thiocyanoxidans gen. nov. sp. nov. - a moderately Stackebrandt, E. 2004. Will we ever understand? The undescribable halophilic chemolithoautotrophic sulfur-oxidizing Gammaproteobacte- diversity of the prokaryotes. Acta Microbiol. Immunol. Hung. 51: rium from hypersaline lakes. Arch. Microbiol. 187: 441–450. 449–462. Sorokin, D.Y., T.P. Tourova, G. Braker and G. Muyzer. 2007c. Thiohalo- Stackebrandt, E. and P. Schumann. 2004. Reclassification of Promi- monas denitrificans gen. nov., sp. nov. and Thiohalomonas nitratireducens cromonospora pachnodae Cazemier et al. 2004 as Xylanimicrobium pachno- sp. nov., novel obligately chemolithoautotrophic, moderately halo- dae gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 54: 1383–1386. philic, thiodenitrifying Gammaproteobacteria from hypersaline habi- Stackebrandt, E., R.M. Kroppenstedt, J. Wink and P. Schumann. 2004a. tats. Int. J. Syst. Evol. Microbiol. 57: 1582–1589. Reclassification of Amycolatopsis orientalis subsp. lurida Lechevalier et Sorokin, D.Y., Y.A. Trotsenko, N.V. Doronina, T.P. Tourova, E.A. Galin- al. 1986 as Amycolatopsis lurida sp. nov., comb. nov. Int. J. Syst. Evol. ski, T.V. Kolganova and G. Muyzer. 2007d. Methylohalomonas lacus gen. Microbiol. 54: 267–268. nov., sp. nov. and Methylonatrum kenyense gen. nov., sp. nov., methy- Stackebrandt, E., P. Schumann and X.L. Cui. 2004b. Reclassification of lotrophic gammaproteobacteria from hypersaline lakes. Int. J. Syst. Cellulosimicrobium variabile Bakalidou et al. 2002 as Isoptericola variabilis Evol. Microbiol. 57: 2762–2769. gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 54: 685–688. Sorokin, D.Y., S. van Pelt, T.P. Tourova, S. Takaichi and G. Muyzer. 2007e. Stackebrandt, E., E. Lang, S. Cousin, O. Päuker, E. Brambilla, R. Krop- Acetonitrile degradation under haloalkaline conditions by Natronocella penstedt and H. Lünsdorf. 2007. Deefgea rivuli gen. nov., sp. nov., a acetinitrilica gen. nov., sp. nov. Microbiology 153: 1157–1164. member of the class Betaproteobacteria. Int. J. Syst. Evol. Microbiol. 57: Soto-Ramírez, N., C. Sánchez-Porro, S. Rosas, W. González, M. Quiño- 639–645. nes, A. Ventosa and R. Montalvo-Rodríguez. 2007. Halomonas avicen- Stephan, R., S. Van Trappen, I. Cleenwerck, M. Vancanneyt, P. De Vos niae sp. nov., isolated from the salty leaves of the black mangrove and A. Lehner. 2007. Enterobacter turicensis sp. nov. and Enterobacter Avicennia germinans in Puerto Rico. Int. J. Syst. Evol. Microbiol. 57: helveticus sp. nov., isolated from fruit powder. Int. J. Syst. Evol. Micro- 900–905. biol. 57: 820–826. Sousa, D.Z., H. Smidt, M.M. Alves and A.J. Stams. 2007. Syntrophomonas Stolz, A., S. Bürger, A. Kuhm, P. Kämpfer and H.J. Busse. 2005. Pusil- zehnderi sp. nov., an anaerobe that degrades long-chain fatty acids in limonas noertemannii gen. nov., sp. nov., a new member of the family co-culture with Methanobacterium formicicum. Int. J. Syst. Evol. Micro- Alcaligenaceae that degrades substituted salicylates. Int. J. Syst. Evol. biol. 57: 609–615. Microbiol. 55: 1077–1081. Sprague, L.D. and H. Neubauer. 2005. Yersinia aleksiciae sp. nov. Int. J. Stolz, A., H.J. Busse and P. Kämpfer. 2007. Pseudomonas knackmussii sp. Syst. Evol. Microbiol. 55: 831–835. nov. Int. J. Syst. Evol. Microbiol. 57: 572–576. Spring, S., U. Jäckel, M. Wagner and P. Kämpfer. 2004. Ottowia thiooxy- Storms, V., N. Van Den Vreken, T. Coeynye, E. Mahenthiralingam, J.J.

dans gen. nov., sp. nov., a novel facultatively anaerobic, N2O-pro- Lipuma, M. Gillis and P. Vandamme. 2004. Polyphasic characterisation ducing bacterium isolated from activated sludge, and transfer of of Burkholderia cepacia-like isolates leading to the emended description Aquaspirillum gracile to Hylemonella gracilis gen. nov., comb. nov. Int. J. of Burkholderia pyrrocinia. Syst. Appl. Microbiol. 27: 517–526. Syst. Evol. Microbiol. 54: 99–106. Sukontasing, S., S. Tanasupawat, S. Moonmangmee, J.S. Lee and K. Spring, S., P. Schumann and C. Spröer. 2005a. Methanogenium frittonii Suzuki. 2007. Enterococcus camelliae sp. nov., isolated from fermented Harris et al. 1996 is a later synonym of Methanoculleus thermophilus tea leaves in Thailand. Int. J. Syst. Evol. Microbiol. 57: 2151–2154. (Rivard and Smith 1982) Maestrojuan et al. 1990. Int. J. Syst. Evol. Summanen, P.H., B. Durmaz, M.L. Väisänen, C. Liu, D. Molitoris, E. Microbiol. 55: 1097–1099. Eerola, I.M. Helander and S.M. Finegold. 2005. Porphyromonas somerae Spring, S., M. Wagner, P. Schumann and P. Kämpfer. 2005b. Malikia sp. nov., a pathogen isolated from humans and distinct from Porphy- granosa gen. nov., sp. nov., a novel polyhydroxyalkanoate- and poly- romonas levii. J. Clin. Microbiol. 43: 4455–4459. phosphate-accumulating bacterium isolated from activated sludge, Sun, W., Y. Huang, Y.Q. Zhang and Z.H. Liu. 2007. Streptomyces emeiensis and reclassification of Pseudomonas spinosa as Malikia spinosa comb. sp. nov., a novel streptomycete from soil in China. Int. J. Syst. Evol. nov. Int. J. Syst. Evol. Microbiol. 55: 621–629. Microbiol. 57: 1635–1639. APPENDIX 1 1411

Suresh, K., S.R. Prabagaran, S. Sengupta and S. Shivaji. 2004a. Bacillus obic, thermotolerant, sulfur-oxidizing chemolithomixotroph isolated indicus sp. nov., an arsenic-resistant bacterium isolated from an aqui- from a deep-sea hydrothermal fumarole in the TOTO caldera, Mari- fer in West Bengal, India. Int. J. Syst. Evol. Microbiol. 54: 1369–1375. ana Arc, Western Pacific. Int. J. Syst. Evol. Microbiol. 54: 2325–2333. Suresh, K., G.S. Reddy, S. Sengupta and S. Shivaji. 2004b. Deinococcus Takai, K., K.H. Nealson and K. Horikoshi. 2004b. Hydrogenimonas ther- indicus sp. nov., an arsenic-resistant bacterium from an aquifer in mophila gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing West Bengal, India. Int. J. Syst. Evol. Microbiol. 54: 457–461. chemolithoautotroph within the ε-Proteobacteria, isolated from a black Suresh, K., S. Mayilraj and T. Chakrabarti. 2006. Effluviibacter roseus gen. smoker in a Central Indian Ridge hydrothermal field. Int. J. Syst. nov., sp. nov., isolated from muddy water, belonging to the family Evol. Microbiol. 54: 25–32. “Flexibacteraceae”. Int. J. Syst. Evol. Microbiol. 56: 1703–1707. Takai, K., K.H. Nealson and K. Horikoshi. 2004c. Methanotorris formi- Suresh, K., S. Mayilraj, A. Bhattacharya and T. Chakrabarti. 2007a. cicus sp. nov., a novel extremely thermophilic, methane-producing Planococcus columbae sp. nov., isolated from pigeon faeces. Int. J. Syst. archaeon isolated from a black smoker chimney in the Central Evol. Microbiol. 57: 1266–1271. Indian Ridge. Int. J. Syst. Evol. Microbiol. 54: 1095–1100. Suresh, K., D. Prakash, N. Rastogi and R.K. Jain. 2007b. Clostridium Takai, K., H. Hirayama, T. Nakagawa, Y. Suzuki, K.H. Nealson and K. nitrophenolicum sp. nov., a novel anaerobic p-nitrophenol-degrading Horikoshi. 2005. Lebetimonas acidiphila gen. nov., sp. nov., a novel ther- bacterium, isolated from a subsurface soil sample. Int. J. Syst. Evol. mophilic, acidophilic, hydrogen-oxidizing chemolithoautotroph within Microbiol. 57: 1886–1890. the ‘Epsilonproteobacteria’, isolated from a deep-sea hydrothermal fuma- Suzuki, D., A. Ueki, A. Amaishi and K. Ueki. 2007a. Desulfopila aestuarii role in the Mariana Arc. Int. J. Syst. Evol. Microbiol. 55: 183–189. gen. nov., sp. nov., a Gram-negative, rod-like, sulfate-reducing bacte- Takai, K., M. Miyazaki, T. Nunoura, H. Hirayama, H. Oida, Y. Furush- rium isolated from an estuarine sediment in Japan. Int. J. Syst. Evol. ima, H. Yamamoto and K. Horikoshi. 2006a. Sulfurivirga caldicuralii Microbiol. 57: 520–526. gen. nov., sp. nov., a novel microaerobic, thermophilic, thiosulfate- Suzuki, D., A. Ueki, A. Amaishi and K. Ueki. 2007b. Desulfobulbus japoni- oxidizing chemolithoautotroph, isolated from a shallow marine cus sp. nov., a novel Gram-negative propionate-oxidizing, sulfate- hydrothermal system occurring in a coral reef, Japan. Int. J. 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Takii, S., S. Hanada, H. Tamaki, Y. Ueno, Y. Sekiguchi, A. Ibe and K. Švec, P., M. Vancanneyt, J. Koort, S.M. Naser, B. Hoste, E. Vihavainen, Matsuura. 2007. Dethiosulfatibacter aminovorans gen. nov., sp. nov., a P. Vandamme, J. Swings and J. Björkroth. 2005b. Enterococcus devriesei novel thiosulfate-reducing bacterium isolated from coastal marine sp. nov., associated with animal sources. Int. J. Syst. Evol. Microbiol. sediment via sulfate-reducing enrichment with Casamino acids. Int. 55: 2479–2484. J. Syst. Evol. Microbiol. 57: 2320–2326. Švec, P., M. Vancanneyt, I. Sedláček, S.M. Naser, C. Snauwaert, K. Lefe- Tamura, T. and T. Sakane. 2004. Planotetraspora silvatica sp. nov. and bvre, B. Hoste and J. Swings. 2006. Enterococcus silesiacus sp. nov. and emended description of the genus Planotetraspora. Int. J. Syst. Evol. Enterococcus termitis sp. nov. Int. J. Syst. Evol. Microbiol. 56: 577–581. Microbiol. 54: 2053–2056. Tago, Y. and A. Yokota. 2004. 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sp. nov., which requires a diffusible compound from a strain related Thierry, S., H. Macarie, T. Iizuka, W. Geißdörfer, E.A. Assih, M. Span- to the genus Sphingomonas for vigorous growth. Int. J. Syst. Evol. evello, F. Verhé, P. Thomas, R. Fudou, O. Monroy, M. Labat and A.S. Microbiol. 54: 955–959. Ouattara. 2004. Pseudoxanthomonas mexicana sp. nov. and Pseudoxan- Tanasupawat, S., C. Thawai, P. Yukphan, D. Moonmangmee, T. Itoh, O. thomonas japonensis sp. nov., isolated from diverse environments, and Adachi and Y. Yamada. 2004. Gluconobacter thailandicus sp. nov., an emended descriptions of the genus Pseudoxanthomonas Finkmann acetic acid bacterium in the α-Proteobacteria. J. Gen. Appl. Microbiol. et al. 2000 and of its type species. Int. J. Syst. Evol. Microbiol. 54: 50: 159–167. 2245–2255. Tanasupawat, S., A. Pakdeeto, S. Namwong, C. Thawai, T. Kudo and T. Thompson, F.L., C.C. Thompson, S. Naser, B. Hoste, K. Vandemeule- Itoh. 2006. 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Vizcaíno, R. Rivas, D.W. Cockcroft and A. Kabani. 2004. Mycobacterium saskatchewanense P.F. Mateos, E. Martínez-Molina, J.M. Igual and A. Willems. 2005. sp. nov., a novel slowly growing scotochromogenic species from Phyllobacterium trifolii sp. nov., nodulating Trifolium and Lupinus in human clinical isolates related to Mycobacterium interjectum and Accu- Spanish soils. Int. J. Syst. Evol. Microbiol. 55: 1985–1989. probe-positive for Mycobacterium avium complex. Int. J. Syst. Evol. Valverde, A., P. Delvasto, A. Peix, E. Velázquez, I. Santa-Regina, A. Ball- Microbiol. 54: 659–667. ester, C. Rodríguez-Barrueco, C. García-Balboa and J.M. Igual. 2006a. 1414 APPENDIX 1

Burkholderia ferrariae sp. nov., isolated from an iron ore in Brazil. Int. De Vuyst and J. Swings. 2005b. Lactobacillus acidifarinae sp. nov. and J. Syst. Evol. Microbiol. 56: 2421–2425. Lactobacillus zymae sp. nov., from wheat sourdoughs. Int. J. Syst. Evol. Valverde, A., J.M. Igual, A. Peix, E. Cervantes and E. Velázquez. 2006b. Microbiol. 55: 615–620. Rhizobium lusitanum sp. nov. a bacterium that nodulates Phaseolus vul- Vancanneyt, M., S.M. Naser, K. Engelbeen, M. De Wachter, R. Van der garis. Int. J. Syst. Evol. Microbiol. 56: 2631–2637. Meulen, I. Cleenwerck, B. Hoste, L. De Vuyst and J. Swings. 2006a. Van Aken, B., C.M. Peres, S.L. Doty, J.M. Yoon and J.L. Schnoor. 2004. Reclassification of Lactobacillus brevis strains LMG 11494 and LMG Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, fac- 11984 as Lactobacillus parabrevis sp. nov. Int. J. Syst. Evol. Microbiol. ultatively methylotrophic, methane-utilizing bacterium isolated from 56: 1553–1557. poplar trees (Populus deltoides x nigra DN34). Int. J. Syst. Evol. Micro- Vancanneyt, M., O.I. Nedashkovskaya, C. Snauwaert, S. Mortier, K. biol. 54: 1191–1196. Vandemeulebroecke, B. Hoste, P. Dawyndt, G.M. Frolova, D. Jans- Van den Bulck, K., A. Decostere, M. Baele, P. Vandamme, J. Mast, R. sens and J. Swings. 2006b. Larkinella insperata gen. nov., sp. nov., a Ducatelle and F. Haesebrouck. 2006. Helicobacter cynogastricus sp. nov., bacterium of the phylum ‘Bacteroidetes’ isolated from water of a steam isolated from the canine gastric mucosa. Int. J. Syst. Evol. Microbiol. generator. Int. J. Syst. Evol. Microbiol. 56: 237–241. 56: 1559–1564. Vancanneyt, M., M. Zamfir, M. De Wachter, I. Cleenwerck, B. Hoste, F. Van Trappen, S., J. Mergaert and J. Swings. 2004a. Loktanella salsilacus Rossi, F. Dellaglio, L. De Vuyst and J. Swings. 2006c. Reclassification gen. nov., sp. nov., Loktanella fryxellensis sp. nov. and Loktanella vest- of Leuconostoc argentinum as a later synonym of Leuconostoc lactis. Int. foldensis sp. nov., new members of the Rhodobacter group, isolated J. Syst. Evol. Microbiol. 56: 213–216. from microbial mats in Antarctic lakes. Int. J. Syst. Evol. Microbiol. Vandamme, P. and T. Coenye. 2004. Taxonomy of the genus Cupriavidus: 54: 1263–1269. a tale of lost and found. Int. J. Syst. Evol. Microbiol. 54: 2285–2289. Van Trappen, S., T.L. Tan, J. Yang, J. Mergaert and J. Swings. 2004b. Vandamme, P., B. Holmes, H. Bercovier and T. Coenye. 2006. Classifica- Alteromonas stellipolaris sp. nov., a novel, budding, prosthecate bac- tion of Centers for Disease Control Group Eugonic Fermenter (EF)- terium from Antarctic seas, and emended description of the genus 4a and EF-4b as Neisseria animaloris sp. nov. and Neisseria zoodegmatis Alteromonas. Int. J. Syst. Evol. Microbiol. 54: 1157–1163. sp. nov., respectively. Int. J. Syst. Evol. Microbiol. 56: 1801–1805. Van Trappen, S., T.L. Tan, J. Yang, J. Mergaert and J. Swings. 2004c. Vandamme, P., K. Opelt, N. Knochel, C. Berg, S. Schönmann, E. De Glaciecola polaris sp. nov., a novel budding and prosthecate bacterium Brandt, L. Eberl, E. Falsen and G. Berg. 2007. Burkholderia bryophila from the Arctic Ocean, and emended description of the genus Gla- sp. nov. and Burkholderia megapolitana sp. nov., moss-associated spe- ciecola. Int. J. Syst. Evol. Microbiol. 54: 1765–1771. cies with antifungal and plant-growth-promoting properties. Int. J. Van Trappen, S., I. Vandecandelaere, J. Mergaert and J. Swings. 2004d. Syst. Evol. Microbiol. 57: 2228–2235. Flavobacterium degerlachei sp. nov., Flavobacterium frigoris sp. nov. and Fla- Vandieken, V., C. Knoblauch and B.B. Jørgensen. 2006a. Desulfovibrio vobacterium micromati sp. nov., novel psychrophilic bacteria isolated from frigidus sp. nov. and Desulfovibrio ferrireducens sp. nov., psychrotolerant microbial mats in Antarctic lakes. Int. J. Syst. Evol. Microbiol. 54: 85–92. bacteria isolated from Arctic fjord sediments (Svalbard) with the abil- Van Trappen, S., I. Vandecandelaere, J. Mergaert and J. Swings. 2004e. ity to reduce Fe(III). Int. J. Syst. Evol. Microbiol. 56: 681–685. Gillisia limnaea gen. nov., sp. nov., a new member of the family Fla- Vandieken, V., C. Knoblauch and B.B. Jørgensen. 2006b. Desulfotomac- vobacteriaceae isolated from a microbial mat in Lake Fryxell, Antarc- ulum arcticum sp. nov., a novel spore-forming, moderately thermo- tica. Int. J. Syst. Evol. Microbiol. 54: 445–448. philic, sulfate-reducing bacterium isolated from a permanently cold Van Trappen, S., I. Vandecandelaere, J. Mergaert and J. Swings. 2004f. fjord sediment of Svalbard. Int. J. Syst. Evol. Microbiol. 56: 687–690. Algoriphagus antarcticus sp. nov., a novel psychrophile from microbial Vandieken, V., M. Mussmann, H. Niemann and B.B. Jørgensen. 2006c. mats in Antarctic lakes. Int. J. Syst. Evol. Microbiol. 54: 1969–1973. Desulfuromonas svalbardensis sp. nov. and Desulfuromusa ferrireducens Van Trappen, S., T.L. Tan, E. Samyn and P. Vandamme. 2005a. Alcali- sp. nov., psychrophilic, Fe(III)-reducing bacteria isolated from Arctic genes aquatilis sp. nov., a novel bacterium from sediments of the Weser sediments, Svalbard. Int. J. Syst. Evol. Microbiol. 56: 1133–1139. Estuary, Germany, and a salt marsh on Shem Creek in Charleston Vaneechoutte, M., P. Kämpfer, T. De Baere, E. Falsen and G. Verschrae- Harbor, USA. Int. J. Syst. Evol. Microbiol. 55: 2571–2575. gen. 2004. Wautersia gen. nov., a novel genus accommodating the Van Trappen, S., I. Vandecandelaere, J. Mergaert and J. Swings. 2005b. phylogenetic lineage including Ralstonia eutropha and related species, Flavobacterium fryxellicola sp. nov. and Flavobacterium psychrolimnae sp. and proposal of Ralstonia [Pseudomonas] syzygii (Roberts et al. 1990) nov., novel psychrophilic bacteria isolated from microbial mats in comb. nov. Int. J. Syst. Evol. Microbiol. 54: 317–327. Antarctic lakes. Int. J. Syst. Evol. Microbiol. 55: 769–772. Vaneechoutte, M., P. Kämpfer, T. De Baere, V. Avesani, M. Janssens and Vancanneyt, M., L.A. Devriese, E.M. De Graef, M. Baele, K. Lefebvre, C. G. Wauters. 2007. Chryseobacterium hominis sp. nov., to accommodate Snauwaert, P. Vandamme, J. Swings and F. Haesebrouck. 2004a. Strep- clinical isolates biochemically similar to CDC groups II-h and II-c. tococcus minor sp. nov., from faecal samples and tonsils of domestic Int. J. Syst. Evol. Microbiol. 57: 2623–2628. animals. Int. J. Syst. Evol. Microbiol. 54: 449–452. Vanparys, B., K. Heylen, L. Lebbe and P. De Vos. 2005a. Pedobacter caeni Vancanneyt, M., J. Mengaud, I. Cleenwerck, K. Vanhonacker, B. Hoste, sp. nov., a novel species isolated from a nitrifying inoculum. Int. J. P. Dawyndt, M.C. Degivry, D. Ringuet, D. Janssens and J. Swings. Syst. Evol. Microbiol. 55: 1315–1318. 2004b. Reclassification of Lactobacillus kefirgranum Takizawa et al. Vanparys, B., K. Heylen, L. Lebbe and P. De Vos. 2005b. Devosia limi sp. 1994 as Lactobacillus kefiranofaciens subsp. kefirgranum subsp. nov. and nov., isolated from a nitrifying inoculum. Int. J. Syst. Evol. Microbiol. emended description of L. kefiranofaciens Fujisawa et al. 1988. Int. J. 55: 1997–2000. Syst. Evol. Microbiol. 54: 551–556. Vanparys, B., K. Heylen, L. Lebbe and P. De Vos. 2006. Pseudomonas peli Vancanneyt, M., M. Zamfir, L.A. Devriese, K. Lefebvre, K. Engelbeen, sp. nov. and Pseudomonas borbori sp. nov., isolated from a nitrifying K. Vandemeulebroecke, M. Amar, L. De Vuyst, F. Haesebrouck and J. inoculum. Int. J. Syst. Evol. Microbiol. 56: 1875–1881. Swings. 2004c. Enterococcus saccharominimus sp. nov., from dairy prod- Vargas, V.A., O.D. Delgado, R. Hatti-Kaul and B. Mattiasson. 2005. Bacillus ucts. Int. J. Syst. Evol. Microbiol. 54: 2175–2179. bogoriensis sp. nov., a novel alkaliphilic, halotolerant bacterium isolated Vancanneyt, M., K. Engelbeen, M. De Wachter, K. Vandemeulebroecke, from a Kenyan soda lake. Int. J. Syst. Evol. Microbiol. 55: 899–902. I. Cleenwerck and J. Swings. 2005a. Reclassification of Lactobacillus Vasilyeva, L.V., M.V. Omelchenko, Y.Y. Berestovskaya, A.M. Lysenko, ferintoshensis as a later heterotypic synonym of Lactobacillus parabuch- W.R. Abraham, S.N. Dedysh and G.A. Zavarzin. 2006. Asticcacaulis neri. Int. J. Syst. Evol. Microbiol. 55: 2195–2198. benevestitus sp. nov., a psychrotolerant, dimorphic, prosthecate bac- Vancanneyt, M., P. Neysens, M. De Wachter, K. Engelbeen, C. Snau- terium from tundra wetland soil. Int. J. Syst. Evol. Microbiol. 56: waert, I. Cleenwerck, R. Van der Meulen, B. Hoste, E. Tsakalidou, L. 2083–2088. APPENDIX 1 1415

Vaz-Moreira, I., C. Faria, M.F. Nobre, P. Schumann, O.C. Nunes and Wang, L., Y. Zhang, Y. Huang, L.A. Maldonado, Z. Liu and M. Goodfel- C.M. Manaia. 2007a. Paenibacillus humicus sp. nov., isolated from low. 2004. Nocardia pigrifrangens sp. nov., a novel actinomycete iso- poultry litter compost. Int. J. Syst. Evol. Microbiol. 57: 2267–2271. lated from a contaminated agar plate. Int. J. Syst. Evol. Microbiol. Vaz-Moreira, I., M.F. Nobre, O.C. Nunes and C.M. Manaia. 2007b. Gul- 54: 1683–1686. benkiania mobilis gen. nov., sp. nov., isolated from treated municipal Wang, L., Y. Huang, Z. Liu, M. Goodfellow and C. Rodríguez. 2006. wastewater. Int. J. Syst. Evol. Microbiol. 57: 1108–1112. Streptacidiphilus oryzae sp. nov., an actinomycete isolated from rice- Vaz-Moreira, I., M.F. Nobre, O.C. Nunes and C.M. Manaia. 2007c. Pseu- field soil in Thailand. Int. J. Syst. Evol. Microbiol. 56: 1257–1261. dosphingobacterium domesticum gen. nov., sp. nov., isolated from home- Wang, L.T., F.L. Lee, C.J. Tai, A. Yokota and H.P. Kuo. 2007. Reclas- made compost. Int. J. Syst. Evol. Microbiol. 57: 1535–1538. sification of Bacillus axarquiensis Ruiz-García et al. 2005 and Bacillus Vela, A.I., M.D. Collins, P.A. Lawson, N. García, L. Domínguez and J.F. malacitensis Ruiz-García et al. 2005 as later heterotypic synonyms of Fernández-Garayzábal. 2005. Uruburuella suis gen. nov., sp. nov., iso- Bacillus mojavensis Roberts et al. 1994. Int. J. Syst. Evol. Microbiol. 57: lated from clinical specimens of pigs. Int. J. Syst. Evol. Microbiol. 55: 1663–1667. 643–647. Wang, Q.F., W. Li, Y.L. Liu, H.H. Cao, Z. Li and G.Q. Guo. 2007a. Bacil- Vela, A.I., M.C. Gutiérrez, E. Falsen, E. Rollán, I. Simarro, P. García, lus qingdaonensis sp. nov., a moderately haloalkaliphilic bacterium iso- L. Domínguez, A. Ventosa and J.F. Fernández-Garayzábal. 2006. lated from a crude sea-salt sample collected near Qingdao in eastern Pseudomonas simiae sp. nov., isolated from clinical specimens from China. Int. J. Syst. Evol. Microbiol. 57: 1143–1147. monkeys (Callithrix geoffroyi). Int. J. Syst. Evol. Microbiol. 56: 2671– Wang, Q.F., W. Li, H. Yang, Y.L. Liu, H.H. Cao, M. Dornmayr-Pfaffen- 2676. huemer, H. Stan-Lotter and G.Q. Guo. 2007b. Halococcus qingdaon- Vela, A.I., A. Fernandez, C. Sánchez-Porro, E. Sierra, M. Mendez, M. ensis sp. nov., a halophilic archaeon isolated from a crude sea-salt Arbelo, A. Ventosa, L. Domínguez and J.F. Fernández-Garayzábal. sample. Int. J. Syst. Evol. Microbiol. 57: 600–604. 2007a. Flavobacterium ceti sp. nov., isolated from beaked whales Wang, W., Z. Zhang, Q. Tang, J. Mao, D. Wei, Y. Huang, Z. Liu, Y. Shi (Ziphius cavirostris). Int. J. Syst. Evol. Microbiol. 57: 2604–2608. and M. Goodfellow. 2007. Lechevalieria xinjiangensis sp. nov., a novel Vela, A.I., N. García, M.V. Latre, A. Casamayor, C. Sánchez-Porro, V. actinomycete isolated from radiation-polluted soil in China. Int. J. Briones, A. Ventosa, L. Domínguez and J.F. Fernández-Garayzábal. Syst. Evol. Microbiol. 57: 2819–2822. 2007b. Aerococcus suis sp. nov., isolated from clinical specimens from Wang, X., T. Maegawa, T. Karasawa, E. Ozaki and S. Nakamura. 2005. swine. Int. J. Syst. Evol. Microbiol. 57: 1291–1294. Clostridium sardiniense Prevot 1938 and Clostridium absonum Nakamura Velázquez, E., T. de Miguel, M. Poza, R. Rivas, R. Rosselló-Mora and T.G. et al. 1973 are heterotypic synonyms: evidence from phylogenetic Villa. 2004. Paenibacillus favisporus sp. nov., a xylanolytic bacterium analyses of phospholipase C and 16S rRNA sequences, and DNA isolated from cow faeces. Int. J. Syst. Evol. Microbiol. 54: 59–64. relatedness. Int. J. Syst. Evol. Microbiol. 55: 1193–1197. Ventosa, A., M.C. Gutiérrez, M. Kamekura, I.S. Zvyagintseva and A. Wang, X., F. Sahr, T. Xue and B. Sun. 2007. Methylobacterium salsuginis sp. Oren. 2004. Taxonomic study of Halorubrum distributum and pro- nov., isolated from seawater. Int. J. Syst. Evol. Microbiol. 57: 1699–1703. posal of Halorubrum terrestre sp. nov. Int. J. Syst. Evol. Microbiol. 54: Wang, Y.N., H. Cai, C.Q. Chi, A.H. Lu, X.G. Lin, Z.F. Jiang and X.L. Wu. 389–392. 2007a. Halomonas shengliensis sp. nov., a moderately halophilic, deni- Verbarg, S., H. Rheims, S. Emus, A. Frühling, R.M. Kroppenstedt, E. trifying, crude-oil-utilizing bacterium. Int. J. Syst. Evol. Microbiol. 57: Stackebrandt and P. Schumann. 2004. Erysipelothrix inopinata sp. nov., 1222–1226. isolated in the course of sterile filtration of vegetable peptone broth, Wang, Y.N., H. Cai, S.L. Yu, Z.Y. Wang, J. Liu and X.L. Wu. 2007b. Halo- and description of Erysipelotrichaceae fam. nov. Int. J. Syst. Evol. Micro- monas gudaonensis sp. nov., isolated from a saline soil contaminated biol. 54: 221–225. by crude oil. Int. J. Syst. Evol. Microbiol. 57: 911–915. Vermis, K., T. Coenye, J.J. LiPuma, E. Mahenthiralingam, H.J. Nelis and Wang, Y.X., X.Y. Zhi, H.H. Chen, Y.Q. Zhang, S.K. Tang, C.L. Jiang, L.H. P. Vandamme. 2004. Proposal to accommodate Burkholderia cepacia Xu and W.J. Li. 2007. Actinomadura alba sp. nov., isolated from soil in genomovar VI as Burkholderia dolosa sp. nov. Int. J. Syst. Evol. Micro- Yunnan, China. Int. J. Syst. Evol. Microbiol. 57: 1735–1739. biol. 54: 689–691. Wang, Z.W., Y.H. Liu, X. Dai, B.J. Wang, C.Y. Jiang and S.J. Liu. 2006. Vetriani, C., M.D. Speck, S.V. Ellor, R.A. Lutz and V. Starovoytov. 2004. Flavobacterium saliperosum sp. nov., isolated from freshwater lake sedi- Thermovibrio ammonificans sp. nov., a thermophilic, chemolitho- ment. Int. J. Syst. Evol. Microbiol. 56: 439–442. trophic, nitrate-ammonifying bacterium from deep-sea hydrother- Warren, Y.A., K.L. Tyrrell, D.M. Citron and E.J.C. Goldstein. 2006. mal vents. Int. J. Syst. Evol. Microbiol. 54: 175–181. Clostridium aldenense sp. nov. and Clostridium citroniae sp. nov. isolated Vinuesa, P., M. León-Barrios, C. Silva, A. Willems, A. Jarabo-Lorenzo, from human clinical infections. J. Clin. 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Caminibacter biol. 56: 541–547. mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, Watanabe, K., N. Nagao, S. Yamamoto, T. Toda and N. Kurosawa. 2007. nitrate-ammonifying bacterium isolated from a deep-sea hydrother- Thermobacillus composti sp. nov., a moderately thermophilic bacterium mal vent on the Mid-Atlantic Ridge. Int. J. Syst. Evol. Microbiol. 55: isolated from a composting reactor. Int. J. Syst. Evol. Microbiol. 57: 773–779. 1473–1477. Wagner-Döbler, I., H. Rheims, A. Felske, A. El-Ghezal, D. Flade-Schröder, H. Wauters, G., G. Haase, V. Avesani, J. Charlier, M. Janssens, J. Van Broeck Laatsch, S. Lang, R. Pukall and B.J. Tindall. 2004. Oceanibulbus indolifex and M. Delmée. 2004. Identification of a novel Brevibacterium species gen. nov., sp. nov., a North Sea alphaproteobacterium that produces bio- isolated from humans and description of Brevibacterium sanguinis sp. active metabolites. Int. J. Syst. Evol. Microbiol. 54: 1177–1184. nov. J. Clin. Microbiol. 42: 2829–2832. Wang, F.Q., E.T. Wang, J. Liu, Q. Chen, X.H. Sui, W.F. Chen and W.X. Weon, H.Y., B.Y. Kim, S.W. Kwon, I.C. Park, I.B. Cha, B.J. Tindall, E. Chen. 2007. Mesorhizobium albiziae sp. nov., a novel bacterium that Stackebrandt, H.G. Trüper and S.J. Go. 2005. Leadbetterella byssophila nodulates Albizia kalkora in a subtropical region of China. Int. J. Syst. gen. nov., sp. nov., isolated from cotton-waste composts for the cultiva- Evol. Microbiol. 57: 1192–1199. tion of oyster mushroom. Int. J. Syst. Evol. Microbiol. 55: 2297–2302. 1416 APPENDIX 1

Weon, H.Y., B.Y. Kim, Y.K. Baek, S.H. Yoo, S.W. Kwon, E. Stackebrandt from swine manure storage pits. Int. J. Syst. Evol. Microbiol. 54: and S.J. Go. 2006a. Two novel species, Lysobacter daejeonensis sp. nov. 241–245. and Lysobacter yangpyeongensis sp. nov., isolated from Korean green- Whitehead, T.R., M.A. Cotta, M.D. Collins, E. Falsen and P.A. Lawson. house soils. Int. J. Syst. Evol. Microbiol. 56: 947–951. 2005. Bacteroides coprosuis sp. nov., isolated from swine-manure stor- Weon, H.Y., B.Y. Kim, J.S. Kim, S.Y. Lee, Y.H. Cho, S.J. Go, S.B. Hong, age pits. Int. J. Syst. Evol. Microbiol. 55: 2515–2518. W.T. Im and S.W. Kwon. 2006b. Pseudoxanthomonas suwonensis sp. Wieser, M., H. Worliczek, P. Kämpfer and H.J. Busse. 2005. Bacillus her- nov., isolated from cotton waste composts. Int. J. Syst. Evol. Micro- bersteinensis sp. nov. Int. J. Syst. Evol. Microbiol. 55: 2119–2123. biol. 56: 659–662. Wink, J., J. Gandhi, R.M. Kroppenstedt, G. Seibert, B. Sträubler, P. Schu- Weon, H.Y., B.Y. Kim, S.H. Yoo, S.W. Kwon, Y.H. Cho, S.J. Go and E. mann and E. Stackebrandt. 2004. Amycolatopsis decaplanina sp. nov., Stackebrandt. 2006c. Chryseobacterium wanjuense sp. nov., isolated from a novel member of the genus with unusual morphology. Int. J. Syst. greenhouse soil in Korea. Int. J. Syst. Evol. Microbiol. 56: 1501–1504. Evol. Microbiol. 54: 235–239. Weon, H.Y., B.Y. Kim, S.H. Yoo, Y.K. Baek, S.Y. Lee, S.W. Kwon, S.J. Go Wink, J.M., R.M. Kroppenstedt, P. Schumann, G. Seibert and E. Stack- and E. Stackebrandt. 2006d. Pseudomonas pohangensis sp. nov., iso- ebrandt. 2006. Actinoplanes liguriensis sp. nov. and Actinoplanes teicho- lated from seashore sand in Korea. Int. J. Syst. Evol. Microbiol. 56: myceticus sp. nov. Int. J. Syst. Evol. Microbiol. 56: 2125–2130. 2153–2156. Wittich, R.M., H.J. Busse, P. Kämpfer, A.J. Macedo, M. Tiirola, M. Wieser Weon, H.Y., B.Y. Kim, S.H. Yoo, J.S. Kim, S.W. Kwon, S.J. Go and E. and W.R. Abraham. 2007a. Sphingomonas fennica sp. nov. and Sphin- Stackebrandt. 2006e. Loktanella koreensis sp. nov., isolated from sea gomonas haloaromaticamans sp. nov., outliers of the genus Sphingomo- sand in Korea. Int. J. Syst. Evol. Microbiol. 56: 2199–2202. nas. Int. J. Syst. Evol. Microbiol. 57: 1740–1746. Weon, H.Y., B.Y. Kim, S.H. Yoo, S.Y. Lee, S.W. Kwon, S.J. Go and E. Wittich, R.M., H.J. Busse, P. Kämpfer, M. Tiirola, M. Wieser, A.J. Macedo Stackebrandt. 2006f. Niastella koreensis gen. nov., sp. nov. and Nias- and W.R. Abraham. 2007b. Sphingobium aromaticiconvertens sp. nov., a tella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, xenobiotic-compound-degrading bacterium from polluted river sedi- isolated from soil cultivated with Korean ginseng. Int. J. Syst. Evol. ment. Int. J. Syst. Evol. Microbiol. 57: 306–310. Microbiol. 56: 1777–1782. Wolin, M.J., T.L. Miller, M.D. Collins and P.A. Lawson. 2003. Formate- Weon, H.Y., B.Y. Kim, S.B. Hong, Y.A. Jeon, S.W. Kwon, S.J. Go and B.S. dependent growth and homoacetogenic fermentation by a bacte- Koo. 2007a. Rhodanobacter ginsengisoli sp. nov. and Rhodanobacter terrae rium from human feces: description of Bryantella formatexigens gen. sp. nov., isolated from soil cultivated with Korean ginseng. Int. J. Syst. nov., sp. nov. Appl. Environ. Microbiol. 69: 6321–6326. Evol. Microbiol. 57: 2810–2813. Wolterink, A., S. Kim, M. Muusse, I.S. Kim, P.J. Roholl, C.G. van Gin- Weon, H.Y., B.Y. Kim, S.B. Hong, J.H. Joa, S.S. Nam, K.H. Lee and kel, A.J. Stams and S.W. Kengen. 2005. Dechloromonas hortensis sp. nov. S.W. Kwon. 2007b. Skermanella aerolata sp. nov., isolated from air, and strain ASK-1, two novel (per)chlorate-reducing bacteria, and and emended description of the genus Skermanella. Int. J. Syst. Evol. taxonomic description of strain GR-1. Int. J. Syst. Evol. Microbiol. Microbiol. 57: 1539–1542. 55: 2063–2068. Weon, H.Y., B.Y. Kim, M.K. Kim, S.H. Yoo, S.W. Kwon, S.J. Go and E. Woo, P.C.Y., A.M.Y. Fung, S.K.P. Lau, J.L.L.Teng, B.H.L.Wong, M.K.M. Stackebrandt. 2007c. Lysobacter niabensis sp. nov. and Lysobacter nias- Wong, E. Hon, G.W.K. Tang and K.Y. Yuen. 2003. Actinomyces hongkon- tensis sp. nov., isolated from greenhouse soils in Korea. Int. J. Syst. gensis sp. nov. A novel Actinomyces species isolated from a patient with Evol. Microbiol. 57: 548–551. pelvic actinomycosis. Syst. Appl. Microbiol. 26: 518–522. Weon, H.Y., B.Y. Kim, P. Schumann, R.M. Kroppenstedt, H.J. Noh, C.W. Wu, C., X. Liu and X. Dong. 2006. Syntrophomonas cellicola sp. nov., a Park and S.W. Kwon. 2007d. Knoellia aerolata sp. nov., isolated from spore-forming syntrophic bacterium isolated from a distilled-spirit- an air sample in Korea. Int. J. Syst. Evol. Microbiol. 57: 2861–2864. fermenting cellar, and assignment of Syntrophospora bryantii to Weon, H.Y., B.Y. Kim, P. Schumann, J.A. Son, J. Jang, S.J. Go and S.W. Syntrophomonas bryantii comb. nov. Int. J. Syst. Evol. Microbiol. 56: Kwon. 2007e. Deinococcus cellulosilyticus sp. nov., isolated from air. Int. 2331–2335. J. Syst. Evol. Microbiol. 57: 1685–1688. Wu, S.Y., S.C. Chen and M.C. Lai. 2005. Methanofollis formosanus sp. nov., Weon, H.Y., B.Y. Kim, S.H. Yoo, J.H. Joa, S.W. Kwon and W.G. Kim. isolated from a fish pond. Int. J. Syst. Evol. Microbiol. 55: 837–842. 2007f. Andreprevotia chitinilytica gen. nov., sp. nov., isolated from for- Wübbeler, J.H., T. Lütke-Eversloh, S. Van Trappen, P. Vandamme and est soil from Halla Mountain, Jeju Island, Korea. Int. J. Syst. Evol. A. Steinbüchel. 2006. Tetrathiobacter mimigardefordensis sp. nov., iso- Microbiol. 57: 1572–1575. lated from compost, a betaproteobacterium capable of utilizing the Weon, H.Y., B.Y. Kim, S.H. Yoo, J.H. Joa, K.H. Lee, Y.S. Zhang, S.W. organic disulfide 3,3š-dithiodipropionic acid. Int. J. Syst. Evol. Micro- Kwon and B.S. Koo. 2007g. Aurantimonas ureilytica sp. nov., isolated biol. 56: 1305–1310. from an air sample. Int. J. Syst. Evol. Microbiol. 57: 1717–1720. Wyss, C., A. Moter, B.K. Choi, F.E. Dewhirst, Y. Xue, P. Schüpbach, U.B. Weon, H.Y., S.Y. Lee, B.Y. Kim, H.J. Noh, P. Schumann, J.S. Kim and Göbel, B.J. Paster and B. Guggenheim. 2004. Treponema putidum sp. S.W. Kwon. 2007h. Ureibacillus composti sp. nov. and Ureibacillus thermo- nov., a medium-sized proteolytic spirochaete isolated from lesions of philus sp. nov., isolated from livestock-manure composts. Int. J. Syst. human periodontitis and acute necrotizing ulcerative gingivitis. Int. Evol. Microbiol. 57: 2908–2911. J. Syst. Evol. Microbiol. 54: 1117–1122. Weon, H.Y., P. Schumann, R.M. Kroppenstedt, B.Y. Kim, J. Song, S.W. Wyss, C., F.E. Dewhirst, B.J. Paster, T. Thurnheer and A. Luginbühl. Kwon, S.J. Go and E. Stackebrandt. 2007i. Terrabacter aerolatus sp. 2005. Guggenheimella bovis gen. nov., sp. nov., isolated from lesions of nov., isolated from an air sample. Int. J. Syst. Evol. Microbiol. 57: bovine dermatitis digitalis. Int. J. Syst. Evol. Microbiol. 55: 667–671. 2106–2109. Xiao, X., P. Wang, X. Zeng, D.H. Bartlett and F. Wang. 2007. Shewanella Weon, H.Y., M.H. Song, J.A. Son, B.Y. Kim, S.W. Kwon, S.J. Go and E. psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from Stackebrandt. 2007j. Flavobacterium terrae sp. nov. and Flavobacterium west Pacific deep-sea sediment. Int. J. Syst. Evol. Microbiol. 57: 60–65. cucumis sp. nov., isolated from greenhouse soil. Int. J. Syst. Evol. Xie, C.H. and A. Yokota. 2004. Transfer of Hyphomicrobium indicum to Microbiol. 57: 1594–1598. the genus Photobacterium as Photobacterium indicum comb. nov. Int. J. Whipps, C.M., W.R. Butler, F. Pourahmad, V.G. Watral and M.L. Kent. Syst. Evol. Microbiol. 54: 2113–2116. 2007. Molecular systematics support the revival of Mycobacterium sal- Xie, C.H. and A. Yokota. 2005a. Phylogenetic analysis of Alysiella and moniphilum (ex Ross 1960) sp. nov., nom. rev., a species closely related related genera of Neisseriaceae: proposal of Alysiella crassa comb. nov., to Mycobacterium chelonae. Int. J. Syst. Evol. Microbiol. 57: 2525–2531. Conchiformibium steedae gen. nov., comb. nov., Conchiformibium kuhniae Whitehead, T.R., M.A. Cotta, M.D. Collins and P.A. Lawson. 2004. Hes- sp. nov. and Bergeriella denitrificans gen. nov., comb. nov. J. Gen. Appl. pellia stercorisuis gen. nov., sp. nov. and Hespellia porcina sp. nov., isolated Microbiol. 51: 1–10. APPENDIX 1 1417

Xie, C.H. and A. Yokota. 2005b. Transfer of the misnamed [Alysiella] Xu, X.W., S.J. Liu, D. Tohty, A. Oren, M. Wu and P.J. Zhou. 2005a. Halo- sp. IAM 14971 (=ATCC 29468) to the genus Moraxella as Moraxella terrigena saccharevitans sp. nov., an extremely halophilic archaeon oblonga sp. nov. Int. J. Syst. Evol. Microbiol. 55: 331–334. from Xin-Jiang, China. Int. J. Syst. Evol. Microbiol. 55: 2539–2542. Xie, C.H. and A. Yokota. 2005c. Dyella japonica gen. nov., sp. nov., a Xu, X.W., P.G. Ren, S.J. Liu, M. Wu and P.J. Zhou. 2005b. Natrinema γ-proteobacterium isolated from soil. Int. J. Syst. Evol. Microbiol. 55: altunense sp. nov., an extremely halophilic archaeon isolated from 753–756. a salt lake in Altun Mountain in Xinjiang, China. Int. J. Syst. Evol. Xie, C.H. and A. Yokota. 2005d. Pleomorphomonas oryzae gen. nov., sp. Microbiol. 55: 1311–1314. nov., a nitrogen-fixing bacterium isolated from paddy soil of Oryza Xu, X.W., M. Wu, P.J. Zhou and S.J. Liu. 2005c. Halobiforma lacisalsi sp. sativa. Int. J. Syst. Evol. Microbiol. 55: 1233–1237. nov., isolated from a salt lake in China. Int. J. Syst. Evol. Microbiol. Xie, C.H. and A. Yokota. 2005e. Azospirillum oryzae sp. nov., a nitrogen- 55: 1949–1952. fixing bacterium isolated from the roots of the rice plant Oryza sativa. Xu, X.W., Y.H. Wu, C.S. Wang, A. Oren, P.J. Zhou and M. Wu. 2007a. Int. J. Syst. Evol. Microbiol. 55: 1435–1438. Haloferax larsenii sp. nov., an extremely halophilic archaeon from a Xie, C.H. and A. Yokota. 2005f. Reclassification of Alcaligenes latus solar saltern. Int. J. Syst. Evol. Microbiol. 57: 717–720. strains IAM 12599T and IAM 12664 and Pseudomonas saccharophila as Xu, X.W., Y.H. Wu, H.B. Zhang and M. Wu. 2007b. Halorubrum arcis sp. Azohydromonas lata gen. nov., comb. nov., Azohydromonas australica sp. nov., an extremely halophilic archaeon isolated from a saline lake nov. and Pelomonas saccharophila gen. nov., comb. nov., respectively. on the Qinghai-Tibet Plateau, China. Int. J. Syst. Evol. Microbiol. 57: Int. J. Syst. Evol. Microbiol. 55: 2419–2425. 1069–1072. Xie, C.H. and A. Yokota. 2006a. Zoogloea oryzae sp. nov., a nitrogen-fixing Xu, X.W., Y.H. Wu, Z. Zhou, C.S. Wang, Y.G. Zhou, H.B. Zhang, Y. Wang bacterium isolated from rice paddy soil, and reclassification of the and M. Wu. 2007c. Halomonas saccharevitans sp. nov., Halomonas arcis strain ATCC 19623 as Crabtreella saccharophila gen. nov., sp. nov. Int. J. sp. nov. and Halomonas subterranea sp. nov., halophilic bacteria iso- Syst. Evol. Microbiol. 56: 619–624. lated from hypersaline environments of China. Int. J. Syst. Evol. Xie, C.H. and A. Yokota. 2006b. Sphingomonas azotifigens sp. nov., a nitro- Microbiol. 57: 1619–1624. gen-fixing bacterium isolated from the roots of Oryza sativa. Int. J. Xue, Y., H. Fan, A. Ventosa, W.D. Grant, B.E. Jones, D.A. Cowan and Y. Syst. Evol. Microbiol. 56: 889–893. Ma. 2005. Halalkalicoccus tibetensis gen. nov., sp. nov., representing a Xie, C.H. and A. Yokota. 2006c. Reclassification of [Flavobacterium] fer- novel genus of haloalkaliphilic archaea. Int. J. Syst. Evol. Microbiol. rugineum as Terrimonas ferruginea gen. nov., comb. nov., and descrip- 55: 2501–2505. tion of Terrimonas lutea sp. nov., isolated from soil. Int. J. Syst. Evol. Xue, Y., X. Zhang, C. Zhou, Y. Zhao, D.A. Cowan, S. Heaphy, W.D. Microbiol. 56: 1117–1121. Grant, B.E. Jones, A. Ventosa and Y. Ma. 2006. Caldalkalibacillus ther- Xie, C.H. and A. Yokota. 2007. Paenibacillus terrigena sp. nov., isolated marum gen. nov., sp. nov., a novel alkalithermophilic bacterium from from soil. Int. J. Syst. Evol. 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Golyshin. 2004. ens harbinense gen. nov., sp. nov., isolated from molasses wastewater. Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium Int. J. Syst. Evol. Microbiol. 56: 755–760. that obligately utilizes hydrocarbons. Int. J. Syst. Evol. Microbiol. 54: Xu, C., L. Wang, Q. Cui, Y. Huang, Z. Liu, G. Zheng and M. Goodfellow. 141–148. 2006. Neutrotolerant acidophilic Streptomyces species isolated from Yamada, T., Y. Sekiguchi, S. Hanada, H. Imachi, A. Ohashi, H. Harada acidic soils in China: Streptomyces guanduensis sp. nov., Streptomyces pau- and Y. Kamagata. 2006. Anaerolinea thermolimosa sp. nov., Levilinea cisporeus sp. nov., Streptomyces rubidus sp. nov. and Streptomyces yanglin- saccharolytica gen. nov., sp. nov. and Leptolinea tardivitalis gen. nov., ensis sp. nov. Int. J. Syst. Evol. Microbiol. 56: 1109–1115. sp. nov., novel filamentous anaerobes, and description of the Xu, J.L., J. He, Z.C. Wang, K. Wang, W.J. Li, S.K. Tang and S.P. Li. 2007. new classes Anaerolineae classis nov. and Caldilineae classis nov. in Rhodococcus qingshengii sp. nov., a carbendazim-degrading bacterium. the bacterial phylum Chloroflexi. Int. J. Syst. Evol. Microbiol. 56: Int. J. Syst. Evol. Microbiol. 57: 2754–2757. 1331–1340. Xu, M., J. Guo, Y. Cen, X. Zhong, W. Cao and G. Sun. 2005. Shewanella Yamada, T., H. Imachi, A. Ohashi, H. Harada, S. Hanada, Y. Kamagata decolorationis sp. nov., a dye-decolorizing bacterium isolated from and Y. Sekiguchi. 2007. Bellilinea caldifistulae gen. nov., sp. nov. and activated sludge of a waste-water treatment plant. Int. J. Syst. Evol. Longilinea arvoryzae gen. nov., sp. nov., strictly anaerobic, filamen- Microbiol. 55: 363–368. tous bacteria of the phylum Chloroflexi isolated from methanogenic Xu, P., W.J. Li, W.L. Wu, D. Wang, L.H. Xu and C.L. Jiang. 2004a. Strepto- propionate-degrading consortia. Int. J. Syst. Evol. Microbiol. 57: myces hebeiensis sp. nov. Int. J. Syst. Evol. 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Kuroda, M. Kashiwa, K. Int. J. Syst. Evol. Microbiol. 55: 1149–1153. Sei, M. Fujita and M. Ike. 2007. Bacillus selenatarsenatis sp. nov., a sel- Xu, P., W.J. Li, S.K. Tang, Y. Jiang, H.Y. Gao, L.H. Xu and C.L. Jiang. enate- and arsenate-reducing bacterium isolated from the effluent 2006. Nocardia lijiangensis sp. nov., a novel actinomycete strain iso- drain of a glass-manufacturing plant. Int. J. Syst. Evol. Microbiol. 57: lated from soil in China. Syst. Appl. Microbiol. 29: 308–314. 1060–1064. 1418 APPENDIX 1

Yamashita, S., T. Uchimura and K. Komagata. 2004. Emendation of the Yi, H. and J. Chun. 2004b. Nocardioides ganghwensis sp. nov., isolated genus Acidomonas Urakami, Tamaoka, Suzuki and Komagata 1989. from tidal flat sediment. Int. J. Syst. Evol. Microbiol. 54: 1295–1299. Int. J. Syst. Evol. Microbiol. 54: 865–870. Yi, H. and J. Chun. 2004c. Nocardioides aestuarii sp. nov., isolated from Yang, D.C., W.T. Im, M.K. Kim and S.T. Lee. 2005. Pseudoxanthomonas tidal flat sediment. Int. J. Syst. Evol. Microbiol. 54: 2151–2154. koreensis sp. nov. and Pseudoxanthomonas daejeonensis sp. nov. Int. J. Yi, H. and J. Chun. 2006a. Thalassobius aestuarii sp. nov., isolated from Syst. Evol. Microbiol. 55: 787–791. tidal flat sediment. J. Microbiol. 44: 171–176. Yang, D.C., W.T. Im, M.K. Kim, H. Ohta and S.T. Lee. 2006. Sphingomo- Yi, H. and J. Chun. 2006b. Flavobacterium weaverense sp. nov. and Fla- nas soli sp. nov., a beta-glucosidase-producing bacterium in the family vobacterium segetis sp. nov., novel psychrophiles isolated from the Ant- Sphingomonadaceae in the alpha-4 subgroup of the Proteobacteria. Int. J. arctic. Int. J. Syst. Evol. Microbiol. 56: 1239–1244. Syst. Evol. Microbiol. 56: 703–707. Yi, H., K.S. Bae and J. Chun. 2004a. Thalassomonas ganghwensis sp. nov., iso- Yang, H.C., W.T. Im, D.S. An, W.S. Park, I.S. Kim and S.T. Lee. 2005. lated from tidal flat sediment. Int. J. Syst. Evol. Microbiol. 54: 377–380. Silvimonas terrae gen. nov., sp. nov., a novel chitin-degrading faculta- Yi, H., K.S. Bae and J. Chun. 2004b. Aestuariibacter salexigens gen. nov., tive anaerobe belonging to the ‘Betaproteobacteria’. Int. J. Syst. Evol. sp. nov. and Aestuariibacter halophilus sp. nov., isolated from tidal flat Microbiol. 55: 2329–2332. sediment, and emended description of Alteromonas macleodii. Int. J. Yang, H.C., W.T. Im, M.S. Kang, D.Y. Shin and S.T. Lee. 2006a. Stenotro- Syst. Evol. Microbiol. 54: 571–576. phomonas koreensis sp. nov., isolated from compost in South Korea. Yi, H., P. Schumann, K. Sohn and J. Chun. 2004c. Serinicoccus marinus Int. J. Syst. Evol. Microbiol. 56: 81–84. gen. nov., sp. nov., a novel actinomycete with l-ornithine and l-serine Yang, H.C., W.T. Im, K.K. Kim, D.S. An and S.T. Lee. 2006b. Burkholderia in the peptidoglycan. Int. J. Syst. Evol. Microbiol. 54: 1585–1589. terrae sp. nov., isolated from a forest soil. Int. J. Syst. Evol. Microbiol. Yi, H., H.M. Oh, J.H. Lee, S.J. Kim and J. Chun. 2005a. Flavobacterium 56: 453–457. antarcticum sp. nov., a novel psychrotolerant bacterium isolated from Yang, S.H., K.K. Kwon, H.S. Lee and S.J. Kim. 2006. Shewanella spongiae the Antarctic. Int. J. Syst. Evol. Microbiol. 55: 637–641. sp. nov., isolated from a marine sponge. Int. J. Syst. Evol. Microbiol. Yi, H., H.I. Yoon and J. Chun. 2005b. Sejongia antarctica gen. nov., sp. 56: 2879–2882. nov. and Sejongia jeonii sp. nov., isolated from the Antarctic. Int. J. Yang, S.H., J.H. Lee, J.S. Ryu, C. Kato and S.J. Kim. 2007. Shewanella Syst. Evol. Microbiol. 55: 409–416. donghaensis sp. nov., a psychrophilic, piezosensitive bacterium pro- Yi, H., Y.W. Lim and J. Chun. 2007a. Taxonomic evaluation of the gen- ducing high levels of polyunsaturated fatty acid, isolated from deep- era Ruegeria and Silicibacter: a proposal to transfer the genus Silicibacter sea sediments. Int. J. Syst. Evol. Microbiol. 57: 208–212. Petursdottir and Kristjansson 1999 to the genus Ruegeria Uchino et al. Yang, S.J., Y.J. Choo and J.C. Cho. 2007. Lutimonas vermicola gen. nov., 1999. Int. J. Syst. Evol. Microbiol. 57: 815–819. sp. nov., a member of the family Flavobacteriaceae isolated from the Yi, H., P. Schumann and J. Chun. 2007b. Demequina aestuarii gen. nov., marine polychaete Periserrula leucophryna. Int. J. Syst. Evol. Microbiol. sp. nov., a novel actinomycete of the suborder Micrococcineae, and 57: 1679–1684. reclassification of Cellulomonas fermentans Bagnara et al. 1985 as Acti- Yang, Y., H.L. Cui, P.J. Zhou and S.J. Liu. 2006. Halobacterium jilantaiense notalea fermentans gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. sp. nov., a halophilic archaeon isolated from a saline lake in Inner 57: 151–156. Mongolia, China. Int. J. Syst. Evol. Microbiol. 56: 2353–2355. Ying, J.Y., B.J. Wang, S.S. Yang and S.J. Liu. 2006. Cyclobacterium lianum Yang, Y., H.L. Cui, P.J. Zhou and S.J. Liu. 2007. Haloarcula amylolytica sp. sp. nov., a marine bacterium isolated from sediment of an oilfield in nov., an extremely halophilic archaeon isolated from Aibi salt lake in the South China Sea, and emended description of the genus Cyclobac- Xin-Jiang, China. Int. J. Syst. Evol. Microbiol. 57: 103–106. terium. Int. J. Syst. Evol. Microbiol. 56: 2927–2930. Yassin, A.F. 2005. Rhodococcus triatomae sp. nov., isolated from a blood- Ying, J.Y., Z.P. Liu, B.J. Wang, X. Dai, S.S. Yang and S.J. Liu. 2007a. Sale- sucking bug. Int. J. Syst. Evol. Microbiol. 55: 1575–1579. gentibacter catena sp. nov., isolated from sediment of the South China Yassin, A.F. 2007. Corynebacterium ureicelerivorans sp. nov., a lipophilic Sea, and emended description of the genus Salegentibacter. Int. J. Syst. bacterium isolated from blood culture. Int. J. Syst. Evol. Microbiol. Evol. Microbiol. 57: 219–222. 57: 1200–1203. Ying, J.Y., B.J. Wang, X. Dai, S.S. Yang, S.J. Liu and Z.P. Liu. 2007b. Yassin, A.F. and S. Brenner. 2005. Nocardia elegans sp. nov., a member Wenxinia marina gen. nov., sp. nov., a novel member of the Roseobacter of the Nocardia vaccinii clade isolated from sputum. Int. J. Syst. Evol. clade isolated from oilfield sediments of the South China Sea. Int. J. Microbiol. 55: 1505–1509. Syst. Evol. Microbiol. 57: 1711–1716. Yassin, A.F. and H. Hupfer. 2006. Williamsia deligens sp. nov., isolated Yong, J.J., S.J. Park, H.J. Kim and S.K. Rhee. 2007. Glaciecola agarilyt- from human blood. Int. J. Syst. Evol. Microbiol. 56: 193–197. ica sp. nov., an agar-digesting marine bacterium from the East Sea, Yassin, A.F. and K.P. Schaal. 2005. Reclassification of Nocardia corynebacte- Korea. Int. J. Syst. Evol. Microbiol. 57: 951–953. rioides Serrano et al. 1972 (Approved Lists 1980) as Rhodococcus coryne- Yoo, S.H., H.Y. Weon, B.Y. Kim, S.B. Hong, S.W. Kwon, Y.H. Cho, S.J. Go bacterioides comb. nov. Int. J. Syst. Evol. Microbiol. 55: 1345–1348. and E. Stackebrandt. 2006. Devosia soli sp. nov., isolated from green- Yassin, A.F., H. Hupfer and K.P. Schaal. 2006. Dietzia cinnamea sp. nov., house soil in Korea. Int. J. Syst. Evol. Microbiol. 56: 2689–2692. a novel species isolated from a perianal swab of a patient with a bone Yoo, S.H., B.Y. Kim, H.Y. Weon, S.W. Kwon, S.J. Go and E. Stackebrandt. marrow transplant. Int. J. Syst. Evol. Microbiol. 56: 641–645. 2007a. Burkholderia soli sp. nov., isolated from soil cultivated with Yassin, A.F., W.M. Chen, H. Hupfer, C. Siering, R.M. Kroppenstedt, A.B. Korean ginseng. Int. J. Syst. Evol. Microbiol. 57: 122–125. Arun, W.A. Lai, F.T. Shen, P.D. Rekha and C.C. Young. 2007a. Lyso- Yoo, S.H., H.Y. Weon, H.B. Jang, B.Y. Kim, S.W. Kwon, S.J. Go and E. bacter defluvii sp. nov., isolated from municipal solid waste. Int. J. Syst. Stackebrandt. 2007b. Sphingobacterium composti sp. nov., isolated from Evol. Microbiol. 57: 1131–1136. cotton-waste composts. Int. J. Syst. Evol. Microbiol. 57: 1590–1593. Yassin, A.F., F.T. Shen, H. Hupfer, A.B. Arun, W.A. Lai, P.D. Rekha and Yoo, S.H., H.Y. Weon, B.Y. Kim, J.H. Kim, Y.K. Baek, S.W. Kwon, S.J. Go C.C. Young. 2007b. Gordonia malaquae sp. nov., isolated from sludge and E. Stackebrandt. 2007c. Pseudoxanthomonas yeongjuensis sp. nov., of a wastewater treatment plant. Int. J. Syst. Evol. Microbiol. 57: isolated from soil cultivated with Korean ginseng. Int. J. Syst. Evol. 1065–1068. Microbiol. 57: 646–649. Yassin, A.F., C.C. Young, W.A. Lai, H. Hupfer, A.B. Arun, F.T. Shen, P.D. Yoon, J., S. Maneerat, F. Kawai and A. Yokota. 2006. Myroides pelagicus sp. Rekha and M.J. Ho. 2007c. Williamsia serinedens sp. nov., isolated from nov., isolated from seawater in Thailand. Int. J. Syst. Evol. Microbiol. an oil-contaminated soil. Int. J. Syst. Evol. Microbiol. 57: 558–561. 56: 1917–1920. Yi, H. and J. Chun. 2004a. Hongiella mannitolivorans gen. nov., sp. nov., Yoon, J., S. Ishikawa, H. Kasai and A. Yokota. 2007a. Perexilibacter aurantia- Hongiella halophila sp. nov. and Hongiella ornithinivorans sp. nov., isolated cus gen. nov., sp. nov., a novel member of the family ‘Flammeovirgaceae’ from tidal flat sediment. Int. J. Syst. Evol. Microbiol. 54: 157–162. isolated from sediment. Int. J. Syst. Evol. Microbiol. 57: 964–968. APPENDIX 1 1419

Yoon, J., S. Ishikawa, H. Kasai and A. Yokota. 2007b. Persicitalea jodogahamensis Yoon, J.H., S.H. Yeo, T.K. Oh and Y.H. Park. 2004m. Alteromonas litorea gen. nov., sp. nov., a marine bacterium of the family ‘Flexibacteraceae’, iso- sp. nov., a slightly halophilic bacterium isolated from an intertidal lated from seawater in Japan. Int. J. Syst. Evol. Microbiol. 57: 1014–1017. sediment of the Yellow Sea in Korea. Int. J. Syst. Evol. Microbiol. 54: Yoon, J., Y. Matsuo, S. Matsuda, K. Adachi, H. Kasai and A. Yokota. 1197–1201. 2007c. Cerasicoccus arenae gen. nov., sp. nov., a carotenoid-producing Yoon, J.H., S.H. Yeo, I.G. Kim and T.K. Oh. 2004n. Shewanella marisflavi marine representative of the family Puniceicoccaceae within the phy- sp. nov. and Shewanella aquimarina sp. nov., slightly halophilic organ- lum ‘Verrucomicrobia’, isolated from marine sand. Int. J. Syst. Evol. isms isolated from sea water of the Yellow Sea in Korea. Int. J. Syst. Microbiol. 57: 2067–2072. Evol. Microbiol. 54: 2347–2352. Yoon, J., Y. Matsuo, S. Matsuda, K. Adachi, H. Kasai and A. Yokota. Yoon, J.H., S.H. Yeo and T.K. Oh. 2004o. Hongiella marincola sp. nov., 2007d. Rubritalea spongiae sp. nov. and Rubritalea tangerina sp. nov., isolated from sea water of the East Sea in Korea. Int. J. Syst. Evol. two carotenoid- and squalene-producing marine bacteria of the fam- Microbiol. 54: 1845–1848. ily Verrucomicrobiaceae within the phylum ‘Verrucomicrobia’, isolated Yoon, J.H. and T.K. Oh. 2005a. Sphingopyxis flavimaris sp. nov., isolated from marine animals. Int. J. Syst. Evol. Microbiol. 57: 2337–2343. from sea water of the Yellow Sea in Korea. Int. J. Syst. Evol. Microbiol. Yoon, J., N. Oku, S. Matsuda, H. Kasai and A. Yokota. 2007e. Pelagicoccus 55: 369–373. croceus sp. nov., a novel marine member of the family Puniceicoccaceae Yoon, J.H. and T.K. Oh. 2005b. Bacillus litoralis sp. nov., isolated from a within the phylum ‘Verrucomicrobia’ isolated from seagrass. Int. J. Syst. tidal flat of the Yellow Sea in Korea. Int. J. Syst. Evol. Microbiol. 55: Evol. Microbiol. 57: 2874–2880. 1945–1948. Yoon, J., M. Yasumoto-Hirose, A. Katsuta, H. Sekiguchi, S. Matsuda, H. Yoon, J.H., K.H. Kang, S.H. Yeo and T.K. Oh. 2005a. Erythrobacter luteolus Kasai and A. Yokota. 2007f. Coraliomargarita akajimensis gen. nov., sp. sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int. J. nov., a novel member of the phylum ‘Verrucomicrobia’ isolated from Syst. Evol. Microbiol. 55: 1167–1170. seawater in Japan. Int. J. Syst. Evol. Microbiol. 57: 959–963. Yoon, J.H., S.J. Kang, S.Y. Jung, C.H. Lee and T.K. Oh. 2005b. Algoripha- Yoon, J., M. Yasumoto-Hirose, Y. Matsuo, M. Nozawa, S. Matsuda, H. gus yeomjeoni sp. nov., isolated from a marine solar saltern in the Yel- Kasai and A. Yokota. 2007g. Pelagicoccus mobilis gen. nov., sp. nov., low Sea, Korea. Int. J. Syst. Evol. Microbiol. 55: 865–870. Pelagicoccus albus sp. nov. and Pelagicoccus litoralis sp. nov., three novel Yoon, J.H., S.J. Kang, C.H. Lee and T.K. Oh. 2005c. Marinicola seohaensis members of subdivision 4 within the phylum ‘Verrucomicrobia’, iso- gen. nov., sp. nov., isolated from sea water of the Yellow Sea, Korea. lated from seawater by in situ cultivation. Int. J. Syst. Evol. Microbiol. Int. J. Syst. Evol. Microbiol. 55: 859–863. 57: 1377–1385. Yoon, J.H., S.J. Kang, S.Y. Lee, M.H. Lee and T.K. Oh. 2005d. Virgibacil- Yoon, J.H., K.H. Kang, T.K. Oh and Y.H. Park. 2004a. Halobacillus locisa- lus dokdonensis sp. nov., isolated from a Korean island, Dokdo, located lis sp. nov., a halophilic bacterium isolated from a marine solar salt- at the edge of the East Sea in Korea. Int. J. Syst. Evol. Microbiol. 55: ern of the Yellow Sea in Korea. Extremophiles 8: 23–28. 1833–1837. Yoon, J.H., K.H. Kang, T.K. Oh and Y.H. Park. 2004b. Erythrobacter Yoon, J.H., S.J. Kang and T.K. Oh. 2005e. Algoriphagus locisalis sp. nov., aquimaris sp. nov., isolated from sea water of a tidal flat of the Yellow isolated from a marine solar saltern. Int. J. Syst. Evol. Microbiol. 55: Sea in Korea. Int. J. Syst. Evol. Microbiol. 54: 1981–1985. 1635–1639. Yoon, J.H., K.H. Kang, T.K. Oh and Y.H. Park. 2004c. Shewanella gaetbuli Yoon, J.H., S.J. Kang and T.K. Oh. 2005f. Marinomonas dokdonensis sp. nov., sp. nov., a slight halophile isolated from a tidal flat in Korea. Int. J. isolated from sea water. Int. J. Syst. Evol. Microbiol. 55: 2303–2307. Syst. Evol. Microbiol. 54: 487–491. Yoon, J.H., S.J. Kang and T.K. Oh. 2005g. Tenacibaculum lutimaris sp. Yoon, J.H., I.G. Kim, K.H. Kang, T.K. Oh and Y.H. Park. 2004d. Nocar- nov., isolated from a tidal flat in the Yellow Sea, Korea. Int. J. Syst. dioides aquiterrae sp. nov., isolated from groundwater in Korea. Int. J. Evol. Microbiol. 55: 793–798. Syst. Evol. Microbiol. 54: 71–75. Yoon, J.H., S.J. Kang, C.H. Lee and T.K. Oh. 2005h. Dokdonia donghaen- Yoon, J.H., I.G. Kim, K.H. Kang, T.K. Oh and Y.H. Park. 2004e. Bacil- sis gen. nov., sp. nov., isolated from sea water. Int. J. Syst. Evol. Micro- lus hwajinpoensis sp. nov. and an unnamed Bacillus genomospecies, biol. 55: 2323–2328. novel members of Bacillus rRNA group 6 isolated from sea water of Yoon, J.H., S.J. Kang, C.H. Lee, H.W. Oh and T.K. Oh. 2005i. Halobacil- the East Sea and the Yellow Sea in Korea. Int. J. Syst. Evol. Microbiol. lus yeomjeoni sp. nov., isolated from a marine solar saltern in Korea. 54: 803–808. Int. J. Syst. Evol. Microbiol. 55: 2413–2417. Yoon, J.H., I.G. Kim, T.K. Oh and Y.H. Park. 2004f. Microbulbifer mar- Yoon, J.H., S.J. Kang, S.Y. Lee, C.H. Lee and T.K. Oh. 2005j. Maribacter itimus sp. nov., isolated from an intertidal sediment from the Yellow dokdonensis sp. nov., isolated from sea water off a Korean island, Sea, Korea. Int. J. Syst. Evol. Microbiol. 54: 1111–1116. Dokdo. Int. J. Syst. Evol. Microbiol. 55: 2051–2055. Yoon, J.H., I.G. Kim, P. Schumann, T.K. Oh and Y.H. Park. 2004g. Yoon, J.H., S.J. Kang, S.H. Yeo and T.K. Oh. 2005k. Paenibacillus alkaliter- Marinibacillus campisalis sp. nov., a moderate halophile isolated from rae sp. nov., isolated from an alkaline soil in Korea. Int. J. Syst. Evol. a marine solar saltern in Korea, with emended description of the Microbiol. 55: 2339–2344. genus Marinibacillus. Int. J. Syst. Evol. Microbiol. 54: 1317–1321. Yoon, J.H., I.G. Kim, M.H. Lee, C.H. Lee and T.K. Oh. 2005l. Nocar- Yoon, J.H., M.H. Lee and T.K. Oh. 2004h. Porphyrobacter donghaensis sp. dioides alkalitolerans sp. nov., isolated from an alkaline serpentinite nov., isolated from sea water of the East Sea in Korea. Int. J. Syst. Evol. soil in Korea. Int. J. Syst. Evol. Microbiol. 55: 809–814. Microbiol. 54: 2231–2235. Yoon, J.H., I.G. Kim, M.H. Lee and T.K. Oh. 2005m. Nocardioides kribben- Yoon, J.H., H.B. Lee, S.H. Yeo and J.E. Choi. 2004i. Janibacter melonis sp. sis sp. nov., isolated from an alkaline soil. Int. J. Syst. Evol. Microbiol. nov., isolated from abnormally spoiled oriental melon in Korea. Int. 55: 1611–1614. J. Syst. Evol. Microbiol. 54: 1975–1980. Yoon, J.H., I.G. Kim, Y.K. Shin and Y.H. Park. 2005n. Proposal of the Yoon, J.H., T.K. Oh and Y.H. Park. 2004j. Kangiella koreensis gen. nov., sp. genus Thermoactinomyces sensu stricto and three new genera, Laceyella, nov. and Kangiella aquimarina sp. nov., isolated from a tidal flat of the Thermoflavimicrobium and Seinonella, on the basis of phenotypic, phy- Yellow Sea in Korea. Int. J. Syst. Evol. Microbiol. 54: 1829–1835. logenetic and chemotaxonomic analyses. Int. J. Syst. Evol. Microbiol. Yoon, J.H., T.K. Oh and Y.H. Park. 2004k. Transfer of Bacillus halodenitri- 55: 395–400. ficans Denariaz et al. 1989 to the genus Virgibacillus as Virgibacillus hal- Yoon, J.H., C.H. Lee, S.J. Kang and T.K. Oh. 2005o. Psychrobacter celer sp. odenitrificans comb. nov. Int. J. Syst. Evol. Microbiol. 54: 2163–2167. nov., isolated from sea water of the South Sea in Korea. Int. J. Syst. Yoon, J.H., S.H. Yeo, I.G. Kim and T.K. Oh. 2004l. Marinobacter flavimaris Evol. Microbiol. 55: 1885–1890. sp. nov. and Marinobacter daepoensis sp. nov., slightly halophilic organ- Yoon, J.H., C.H. Lee and T.K. Oh. 2005p. Bacillus cibi sp. nov., isolated isms isolated from sea water of the Yellow Sea in Korea. Int. J. Syst. from jeotgal, a traditional Korean fermented seafood. Int. J. Syst. Evol. Microbiol. 54: 1799–1803. Evol. Microbiol. 55: 733–736. 1420 APPENDIX 1

Yoon, J.H., C.H. Lee and T.K. Oh. 2005q. Aeromicrobium alkaliterrae sp. Yoon, J.H., M.H. Lee, S.J. Kang and T.K. Oh. 2006o. Algoriphagus terrigena nov., isolated from an alkaline soil, and emended description of the sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 56: 777–780. genus Aeromicrobium. Int. J. Syst. Evol. Microbiol. 55: 2171–2175. Yoon, J.H., M.H. Lee, S.J. Kang, S.Y. Lee and T.K. Oh. 2006p. Sphingomo- Yoon, J.H., C.H. Lee, S.H. Yeo and T.K. Oh. 2005r. Psychrobacter aquimaris nas dokdonensis sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. sp. nov. and Psychrobacter namhaensis sp. nov., isolated from sea water of 56: 2165–2169. the South Sea in Korea. Int. J. Syst. Evol. Microbiol. 55: 1007–1013. Yoon, J.H., M.H. Lee, S.J. Kang, S.Y. Park and T.K. Oh. 2006q. Pedobacter Yoon, J.H., C.H. Lee, S.H. Yeo and T.K. Oh. 2005s. Sphingopyxis baekryun- sandarakinus sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. gensis sp. nov., an orange-pigmented bacterium isolated from sea 56: 1273–1277. water of the Yellow Sea in Korea. Int. J. Syst. Evol. Microbiol. 55: Yoon, J.H., P. Schumann, S.J. Kang, S.Y. Jung and T.K. Oh. 2006r. Isop- 1223–1227. tericola dokdonensis sp. nov., isolated from soil. Int. J. Syst. Evol. Micro- Yoon, J.H., C.H. Lee and T.K. Oh. 2005t. Nocardioides dubius sp. nov., biol. 56: 2893–2897. isolated from an alkaline soil. Int. J. Syst. Evol. Microbiol. 55: 2209– Yoon, J.H., S.Y. Jung, Y.T. Jung and T.K. Oh. 2007i. Idiomarina salinarum 2212. sp. nov., isolated from a marine solar saltern in Korea. Int. J. Syst. Yoon, J.H., J.K. Lee, Y.O. Kim and T.K. Oh. 2005u. Photobacterium lipoly- Evol. Microbiol. 57: 2503–2506. ticum sp. nov., a bacterium with lipolytic activity isolated from the Yoon, J.H., S.Y. Jung, S.J. Kang and T.K. Oh. 2007ii. Microbulbifer celer sp. Yellow Sea in Korea. Int. J. Syst. Evol. Microbiol. 55: 335–339. nov., isolated from a marine solar saltern of the Yellow Sea in Korea. Yoon, J.H., M.H. Lee, T.K. Oh and Y.H. Park. 2005v. Muricauda flave- Int. J. Syst. Evol. Microbiol. 57: 2365–2369. scens sp. nov. and Muricauda aquimarina sp. nov., isolated from a salt Yoon, J.H., S.Y. Jung, S.J. Kang, Y.T. Jung and T.K. Oh. 2007iii. Salegent- lake near Hwajinpo Beach of the East Sea in Korea, and emended ibacter salarius sp. nov., isolated from a marine solar saltern. Int. J. description of the genus Muricauda. Int. J. Syst. Evol. Microbiol. 55: Syst. Evol. Microbiol. 57: 2738–2742. 1015–1019. Yoon, J.H., S.J. Kang, W. Kim and T.K. Oh. 2007iv. Pigmentiphaga daeg- Yoon, J.H., T.K. Oh and Y.H. Park. 2005w. Erythrobacter seohaensis sp. nov. uensis sp. nov., isolated from wastewater of a dye works, and emended and Erythrobacter gaetbuli sp. nov., isolated from a tidal flat of the Yel- description of the genus Pigmentiphaga. Int. J. Syst. Evol. Microbiol. low Sea in Korea. Int. J. Syst. Evol. Microbiol. 55: 71–75. 57: 1188–1191. Yoon, J.H., S.H. Yeo, T.K. Oh and Y.H. Park. 2005x. Psychrobacter alimen- Yoon, J.H., S.J. Kang, S.Y. Jung and T.K. Oh. 2007v. Humicoccus flavidus tarius sp. nov., isolated from squid jeotgal, a traditional Korean fer- gen. nov., sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 57: mented seafood. Int. J. Syst. Evol. Microbiol. 55: 171–176. 56–59. Yoon, J.H., S.J. Kang, S.Y. Jung, H.W. Oh and T.K. Oh. 2006a. Gaetbuli- Yoon, J.H., S.J. Kang, Y.T. Jung and T.K. Oh. 2007vi. Halobacillus camp- microbium brevivitae gen. nov., sp. nov., a novel member of the family isalis sp. nov., containing meso-diaminopimelic acid in the cell-wall Flavobacteriaceae isolated from a tidal flat of the Yellow Sea in Korea. peptidoglycan, and emended description of the genus Halobacillus. Int. J. Syst. Evol. Microbiol. 56: 115–119. Int. J. Syst. Evol. Microbiol. 57: 2021–2025. Yoon, J.H., S.J. Kang, C.H. Lee and T.K. Oh. 2006b. Donghaeana dok- Yoon, J.H., S.J. Kang, C.H. Lee and T.K. Oh. 2007vii. Nocardioides insulae donensis gen. nov., sp. nov., isolated from sea water. Int. J. Syst. Evol. sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 57: 136–140. Microbiol. 56: 187–191. Yoon, J.H., S.J. Kang, J.S. Lee and T.K. Oh. 2007viii. Flavobacterium ter- Yoon, J.H., S.J. Kang, J.S. Lee and T.K. Oh. 2006c. Brevundimonas ter- rigena sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 57: rae sp. nov., isolated from an alkaline soil in Korea. Int. J. Syst. Evol. 947–950. Microbiol. 56: 2915–2919. Yoon, J.H., S.J. Kang, J.S. Lee, H.W. Oh and T.K. Oh. 2007ix. Brevundi- Yoon, J.H., S.J. Kang, M.H. Lee, H.W. Oh and T.K. Oh. 2006d. Porphy- monas lenta sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. robacter dokdonensis sp. nov., isolated from sea water. Int. J. Syst. Evol. 57: 2236–2240. Microbiol. 56: 1079–1083. Yoon, J.H., S.J. Kang, M.H. Lee and T.K. Oh. 2007x. Description of Yoon, J.H., S.J. Kang, H.W. Oh, J.S. Lee and T.K. Oh. 2006e. Brevundi- Sulfitobacter donghicola sp. nov., isolated from seawater of the East monas kwangchunensis sp. nov., isolated from an alkaline soil in Korea. Sea in Korea, transfer of Staleya guttiformis Labrenz et al. 2000 to the Int. J. Syst. Evol. Microbiol. 56: 613–617. genus Sulfitobacter as Sulfitobacter guttiformis comb. nov. and emended Yoon, J.H., S.J. Kang, H.W. Oh and T.K. Oh. 2006f. Stenotrophomonas description of the genus Sulfitobacter. Int. J. Syst. Evol. Microbiol. 57: dokdonensis sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 1788–1792. 56: 1363–1367. Yoon, J.H., S.J. Kang, S.Y. Lee and T.K. Oh. 2007xi. Phaeobacter daeponen- Yoon, J.H., S.J. Kang and T.K. Oh. 2006g. Dokdonella koreensis gen. nov., sis sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int. J. sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 56: 145–150. Syst. Evol. Microbiol. 57: 856–861. Yoon, J.H., S.J. Kang and T.K. Oh. 2006h. Variovorax dokdonensis sp. nov., Yoon, J.H., S.J. Kang, S.Y. Lee and T.K. Oh. 2007xii. Loktanella maricola isolated from soil. Int. J. Syst. Evol. Microbiol. 56: 811–814. sp. nov., isolated from seawater of the East Sea in Korea. Int. J. Syst. Yoon, J.H., S.J. Kang and T.K. Oh. 2006i. Flavobacterium soli sp. nov., iso- Evol. Microbiol. 57: 1799–1802. lated from soil. Int. J. Syst. Evol. Microbiol. 56: 997–1000. Yoon, J.H., S.J. Kang and T.K. Oh. 2007xiii. Donghicola eburneus gen. Yoon, J.H., S.J. Kang and T.K. Oh. 2006j. Polaribacter dokdonensis sp. nov., nov., sp. nov., isolated from seawater of the East Sea in Korea. Int. J. isolated from seawater. Int. J. Syst. Evol. Microbiol. 56: 1251–1255. Syst. Evol. Microbiol. 57: 73–76. Yoon, J.H., S.J. Kang, P. Schumann and T.K. Oh. 2006k. Yonghaparkia Yoon, J.H., S.J. Kang and T.K. Oh. 2007xiv. Sulfitobacter marinus sp. nov., alkaliphila gen. nov., sp. nov., a novel member of the family Microbac- isolated from seawater of the East Sea in Korea. Int. J. Syst. Evol. teriaceae isolated from an alkaline soil. Int. J. Syst. Evol. Microbiol. 56: Microbiol. 57: 302–305. 2415–2420. Yoon, J.H., S.J. Kang and T.K. Oh. 2007xv. Chryseobacterium daeguense sp. Yoon, J.H., S.Y. Jung, W. Kim, S.W. Nam and T.K. Oh. 2006l. Nesteren- nov., isolated from wastewater of a textile dye works. Int. J. Syst. Evol. konia jeotgali sp. nov., isolated from jeotgal, a traditional Korean fer- Microbiol. 57: 1355–1359. mented seafood. Int. J. Syst. Evol. Microbiol. 56: 2587–2592. Yoon, J.H., S.J. Kang, S. Park and T.K. Oh. 2007xvi. Caenispirillum bisan- Yoon, J.H., C.H. Lee and T.K. Oh. 2006m. Nocardioides lentus sp. nov., iso- ense gen. nov., sp. nov., isolated from sludge of a dye works. Int. J. Syst. lated from an alkaline soil. Int. J. Syst. Evol. Microbiol. 56: 271–275. Evol. Microbiol. 57: 1217–1221. Yoon, J.H., J.K. Lee, S.Y. Jung, J.A. Kim, H.K. Kim and T.K. Oh. 2006n. Yoon, J.H., S.J. Kang, S. Park and T.K. Oh. 2007xvii. Devosia insulae sp. Nocardioides kongjuensis sp. nov., an N-acylhomoserine lactone-degrad- nov., isolated from soil, and emended description of the genus Devo- ing bacterium. Int. J. Syst. Evol. Microbiol. 56: 1783–1787. sia. Int. J. Syst. Evol. Microbiol. 57: 1310–1314. APPENDIX 1 1421

Yoon, J.H., S.J. Kang, H.W. Oh and T.K. Oh. 2007xviii. Pedobacter insulae gammaproteobacterium isolated from an oil-contaminated site. Int. sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 57: 1999–2003. J. Syst. Evol. Microbiol. 57: 2790–2793. Yoon, J.H., S.J. Kang, S. Park and T.K. Oh. 2007xix. Pedobacter lentus sp. Young, J.M. 2004. Renaming of Agrobacterium larrymoorei Bouzar and nov. and Pedobacter terricola sp. nov., isolated from soil. Int. J. Syst. Jones 2001 as Rhizobium larrymoorei (Bouzar and Jones 2001) comb. Evol. Microbiol. 57: 2089–2095. nov. Int. J. Syst. Evol. Microbiol. 54: 149. Yoon, J.H., S.J. Kang, S. Park and T.K. Oh. 2007xx. Jannaschia donghaen- Yuan, S., P. Ren, J. Liu, Y. Xue, Y. Ma and P. Zhou. 2007. Lentibacillus halo- sis sp. nov., isolated from seawater of the East Sea, Korea. Int. J. Syst. durans sp. nov., a moderately halophilic bacterium isolated from a salt Evol. Microbiol. 57: 2132–2136. lake in Xin-Jiang, China. Int. J. Syst. Evol. Microbiol. 57: 485–488. Yoon, J.H., S.J. Kang and T.K. Oh. 2007xxi. Reclassification of Marinococ- Yukphan, P., W. Potacharoen, S. Tanasupawat, M. Tanticharoen and Y. cus albus Hao et al. 1985 as Salimicrobium album gen. nov., comb. nov. Yamada. 2004a. Asaia krungthepensis sp. nov., an acetic acid bacterium and Bacillus halophilus Ventosa et al. 1990 as Salimicrobium halophilum in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol. 54: 313–316. comb. nov., and description of Salimicrobium luteum sp. nov. Int. J. Yukphan, P., M. Takahashi, W. Potacharoen, S. Tanasupawat, Y. Naka- Syst. Evol. Microbiol. 57: 2406–2411. gawa, M. Tanticharoen and Y. Yamada. 2004b. Gluconobacter albidus ex Yoon, J.H., S.J. Kang and T.K. Oh. 2007xxii. Pedobacter terrae sp. nov., Kondo and Ameyama 1958 sp. nov., nom. rev., an acetic acid bacte- isolated from soil. Int. J. Syst. Evol. Microbiol. 57: 2462–2466. rium in the α-Proteobacteria. J. Gen. Appl. Microbiol. 50: 235–242. Yoon, J.H., S.J. Kang, S.Y. Lee and T.K. Oh. 2007xxiii. Nocardioides ter- Yukphan, P., T. Malimas, W. Potacharoen, S. Tanasupawat, M. Tantich- rigena sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 57: aroen and Y. Yamada. 2005c. Neoasaia chiangmaiensis gen. nov., sp. nov., 2472–2475. a novel osmotolerant acetic acid bacterium in the α-Proteobacteria. J. Yoon, J.H., S.J. Kang, H.W. Oh and T.K. Oh. 2007xxiv. Roseomonas terrae Gen. Appl. Microbiol. 51: 301–311. sp. nov. Int. J. Syst. Evol. Microbiol. 57: 2485–2488. Yumoto, I., K. Hirota, T. Kawahara, Y. Nodasaka, H. Okuyama, H. Mat- Yoon, J.H., S.J. Kang, P. Schumann and T.K. Oh. 2007xxv. Cellulosimicro- suyama, Y. Yokota, K. Nakajima and T. Hoshino. 2004a. Anoxybacillus bium terreum sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. voinovskiensis sp. nov., a moderately thermophilic bacterium from a 57: 2493–2497. hot spring in Kamchatka. Int. J. Syst. Evol. Microbiol. 54: 1239–1242. Yoon, J.H., S.J. Kang, S. Park, S.Y. Lee and T.K. Oh. 2007xxvi. Reclassifica- Yumoto, I., K. Hirota, Y. Nodasaka, Y. Yokota, T. Hoshino and K. Naka- tion of Aquaspirillum itersonii and Aquaspirillum peregrinum as Novispiril- jima. 2004b. Alkalibacterium psychrotolerans sp. nov., a psychrotoler- lum itersonii gen. nov., comb. nov. and Insolitispirillum peregrinum gen. ant obligate alkaliphile that reduces an indigo dye. Int. J. Syst. Evol. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 57: 2830–2835. Microbiol. 54: 2379–2383. Yoon, J.H., M.H. Lee, S.J. Kang and T.K. Oh. 2007xxvii. Marinobacter Yumoto, I., K. Hirota, S. Yamaga, Y. Nodasaka, T. Kawasaki, H. Matsuy- salicampi sp. nov., isolated from a marine solar saltern in Korea. Int. ama and K. Nakajima. 2004c. Bacillus asahii sp. nov., a novel bacte- J. Syst. Evol. Microbiol. 57: 2102–2105. rium isolated from soil with the ability to deodorize the bad smell Yoon, J.H., S.Y. Lee, S.J. Kang, C.H. Lee and T.K. Oh. 2007xxviii. Pseu- generated from short-chain fatty acids. Int. J. Syst. Evol. Microbiol. doruegeria aquimaris gen. nov., sp. nov., isolated from seawater of the 54: 1997–2001. East Sea in Korea. Int. J. Syst. Evol. Microbiol. 57: 542–547. Yumoto, I., M. Hishinuma-Narisawa, K. Hirota, T. Shingyo, F. Takebe, Y. Yoon, J.H., S.E. Park, S.J. Kang and T.K. Oh. 2007xxix. Rheinheimera Nodasaka, H. Matsuyama and I. Hara. 2004d. Exiguobacterium oxidotol- aquimaris sp. nov., isolated from seawater of the East Sea in Korea. erans sp. nov., a novel alkaliphile exhibiting high catalase activity. Int. Int. J. Syst. Evol. Microbiol. 57: 1386–1390. J. Syst. Evol. Microbiol. 54: 2013–2017. Yoon, M.H. and W.T. Im. 2007. Flavisolibacter ginsengiterrae gen. nov., sp. Yumoto, I., K. Hirota, T. Goto, Y. Nodasaka and K. Nakajima. 2005a. nov. and Flavisolibacter ginsengisoli sp. nov., isolated from ginseng cul- Bacillus oshimensis sp. nov., a moderately halophilic, non-motile alka- tivating soil. Int. J. Syst. Evol. Microbiol. 57: 1834–1839. liphile. Int. J. Syst. Evol. Microbiol. 55: 907–911. Yoon, M.H., L.N. Ten and W.T. Im. 2007a. Paenibacillus ginsengarvi sp. Yumoto, I., K. Hirota, Y. Nodasaka and K. Nakajima. 2005b. Oceanobacil- nov., isolated from soil from ginseng cultivation. Int. J. Syst. Evol. lus oncorhynchi sp. nov., a halotolerant obligate alkaliphile isolated Microbiol. 57: 1810–1814. from the skin of a rainbow trout (Oncorhynchus mykiss), and emended Yoon, M.H., L.N. Ten, W.T. Im and S.T. Lee. 2007b. Pedobacter panaci- description of the genus Oceanobacillus. Int. J. Syst. Evol. Microbiol. terrae sp. nov., isolated from soil in South Korea. Int. J. Syst. Evol. 55: 1521–1524. Microbiol. 57: 381–386. Zabel, H.P., H. König and J. Winter. 1985. Emended description of Yoon, M.H., L.N. Ten, W.T. Im and S.T. Lee. 2007c. Methylibium fulvum Methanogenium thermophilicum, Rivard and Smith, and assignment of sp. nov., a member of the Betaproteobacteria isolated from ginseng field new isolates to this species. Syst. Appl. Microbiol. 6: 72–78. soil, and emended description of the genus Methylibium. Int. J. Syst. Zavarzina, D.G., T.V. Kolganova, E.S. Boulygina, N.A. Kostrikina, T.P. Evol. Microbiol. 57: 2062–2066. Tourova and G.A. Zavarzin. 2006. Geoalkalibacter ferrihydriticus gen. Young, C.C., P. Kämpfer, F.T. Shen, W.A. Lai and A.B. Arun. 2005. nov. sp. nov., the first alkaliphilic representative of the family Geobacte- Chryseobacterium formosense sp. nov., isolated from the rhizosphere of raceae, isolated from a soda lake. Mikrobiologiia. 75: 775–785 (in Rus- Lactuca sativa L. (garden lettuce). Int. J. Syst. Evol. Microbiol. 55: sian); English translation: Microbiology. 75: 673–682. 423–426. Zavarzina, D.G., T.G. Sokolova, T.P. Tourova, N.A. Chernyh, N.A. Young, C.C., M.J. Ho, A.B. Arun, W.M. Chen, W.A. Lai, F.T. Shen, P.D. Kostrikina and E.A. Bonch-Osmolovskaya. 2007. Thermincola fer- Rekha and A.F. Yassin. 2007a. Pseudoxanthomonas spadix sp. nov., riacetica sp. nov., a new anaerobic, thermophilic, facultatively isolated from oil-contaminated soil. Int. J. Syst. Evol. Microbiol. 57: chemolithoautotrophic bacterium capable of dissimilatory Fe(III) 1823–1827. reduction. Extremophiles 11: 1–7. Young, C.C., M.J. Ho, A.B. Arun, W.M. Chen, W.A. Lai, F.T. Shen, P.D. Zhang, B., H. Tong and X. Dong. 2005. Pediococcus cellicola sp. nov., a Rekha and A.F. Yassin. 2007b. Sphingobium olei sp. nov., isolated from novel lactic acid coccus isolated from a distilled-spirit-fermenting cel- oil-contaminated soil. Int. J. Syst. Evol. Microbiol. 57: 2613–2617. lar. Int. J. Syst. Evol. Microbiol. 55: 2167–2170. Young, C.C., P. Kämpfer, W.M. Chen, W.S. Yen, A.B. Arun, W.A. Lai, F.T. Zhang, C., X. Liu and X. Dong. 2004. Syntrophomonas curvata sp. nov., an Shen, P.D. Rekha, K.Y. Lin and J.H. Chou. 2007c. Luteimonas composti anaerobe that degrades fatty acids in co-culture with methanogens. sp. nov., a moderately thermophilic bacterium isolated from food Int. J. Syst. Evol. Microbiol. 54: 969–973. waste. Int. J. Syst. Evol. Microbiol. 57: 741–744. Zhang, C., X. Liu and X. Dong. 2005. Syntrophomonas erecta sp. nov., a Young, C.C., P. Kämpfer, M.J. Ho, H.J. Busse, B.E. Huber, A.B. Arun, F.T. novel anaerobe that syntrophically degrades short-chain fatty acids. Shen, W.A. Lai and P.D. Rekha. 2007d. Arenimonas malthae sp. nov., a Int. J. Syst. Evol. Microbiol. 55: 799–803. 1422 APPENDIX 1

Zhang, D.C., H.X. Wang, H.C. Liu, X.Z. Dong and P.J. Zhou. 2006a. Zhang, Y.Q., P. Schumann, L.Y. Yu, H.Y. Liu, Y.Q. Zhang, L.H. Xu, E. Flavobacterium glaciei sp. nov., a novel psychrophilic bacterium iso- Stackebrandt, C.L. Jiang and W.J. Li. 2007a. Zhihengliuella halotolerans lated from the China No.1 glacier. Int. J. Syst. Evol. Microbiol. 56: gen. nov., sp. nov., a novel member of the family Micrococcaceae. Int. J. 2921–2925. Syst. Evol. Microbiol. 57: 1018–1023. Zhang, D.C., Y. Yu, B. Chen, H.X. Wang, H.C. Liu, X.Z. Dong and P.J. Zhang, Y.Q., C.H. Sun, W.J. Li, L.Y. Yu, J.Q. Zhou, Y.Q. Zhang, L.H. Xu Zhou. 2006b. Glaciecola psychrophila sp. nov., a novel psychrophilic and C.L. Jiang. 2007b. Deinococcus yunweiensis sp. nov., a gamma- and bacterium isolated from the Arctic. Int. J. Syst. Evol. Microbiol. 56: UV-radiation-resistant bacterium from China. Int. J. Syst. Evol. Micro- 2867–2869. biol. 57: 370–375. Zhang, D.C., H.X. Wang, H.L. Cui, Y. Yang, H.C. Liu, X.Z. Dong and Zhang, Y.Q., L.Y. Yu, H.Y. Liu, Y.Q. Zhang, L.H. Xu and W.J. Li. 2007c. P.J. Zhou. 2007. Cryobacterium psychrotolerans sp. nov., a novel psychro- Salinicoccus luteus sp. nov., isolated from a desert soil. Int. J. Syst. Evol. tolerant bacterium isolated from the China No. 1 glacier. Int. J. Syst. Microbiol. 57: 1901–1905. Evol. Microbiol. 57: 866–869. Zhang, Y.X., C. Dong and S. Biao. 2007. Planifilum yunnanense sp. nov., a Zhang, G., G. Zeng, X. Cai, S. Deng, H. Luo and G. Sun. 2007. Brachy- thermophilic thermoactinomycete isolated from a hot spring. Int. J. bacterium zhongshanense sp. nov., a cellulose-decomposing bacterium Syst. Evol. Microbiol. 57: 1851–1854. from sediment along the Qijiang River, Zhongshan City, China. Int. Zhao, J.S., D. Manno, C. Beaulieu, L. Paquet and J. Hawari. 2005. She- J. Syst. Evol. Microbiol. 57: 2519–2524. wanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5- Zhang, H., W. Zheng, J. Huang, H. Luo, Y. Jin, W. Zhang, Z. Liu and Y. trinitro-1,3,5-triazine-degrading bacterium from marine sediment. Huang. 2006. Actinoalloteichus hymeniacidonis sp. nov., an actinomy- Int. J. Syst. Evol. Microbiol. 55: 1511–1520. cete isolated from the marine sponge Hymeniacidon perleve. Int. J. Syst. Zhao, J.S., D. Manno, C. Leggiadro, D. O’Neil and J. Hawari. 2006. She- Evol. Microbiol. 56: 2309–2312. wanella halifaxensis sp. nov., a novel obligately respiratory and denitri- Zhang, J., Z. Liu and M. Goodfellow. 2004. Nocardia xishanensis sp. nov., fying psychrophile. Int. J. Syst. Evol. Microbiol. 56: 205–212. a novel actinomycete isolated from soil. Int. J. Syst. Evol. Microbiol. Zhao, J.S., D. Manno, S. Thiboutot, G. Ampleman and J. Hawari. 2007. 54: 2301–2305. Shewanella canadensis sp. nov. and Shewanella atlantica sp. nov., man- Zhang, J., Q. Xie, Z. Liu and M. Goodfellow. 2007. Lechevalieria fradiae ganese dioxide- and hexahydro-1,3,5-trinitro-1,3,5-triazine-reduc- sp. nov., a novel actinomycete isolated from soil in China. Int. J. Syst. ing, psychrophilic marine bacteria. Int. J. Syst. Evol. Microbiol. 57: Evol. Microbiol. 57: 832–836. 2155–2162. Zhang, L., Z. Xu and B.K. Patel. 2007a. Bacillus decisifrondis sp. nov., Zhilina, T.N., R. Appel, C. Probian, E. Llobet Brossa, J. Harder, F. Wid- isolated from soil underlying decaying leaf foliage. Int. J. Syst. Evol. del and G.A. Zavarzin. 2004. Alkaliflexus imshenetskii gen. nov. sp. Microbiol. 57: 974–978. nov., a new alkaliphilic gliding carbohydrate-fermenting bacterium Zhang, L., Z. Xu and B.K. Patel. 2007b. Frondicola australicus gen. nov., with propionate formation from a soda lake. Arch. Microbiol. 182: sp. nov., isolated from decaying leaf litter from a pine forest. Int. J. 244–253. Syst. Evol. Microbiol. 57: 1177–1182. Zhilina, T.N., V.V. Kevbrin, T.P. Tourova, A.M. Lysenko, N.A. Kostrikina Zhang, L.P., C.L. Jiang and W.X. Chen. 2005. Streptosporangium yunnan- and G.A.Zavarzin. 2005. Clostridium alkalicellum sp. nov., an obligately ense sp. nov. and Streptosporangium purpuratum sp. nov., from soil in alkaliphilic cellulolytic bacterium from a soda lake in the Baikal China. Int. J. Syst. Evol. Microbiol. 55: 719–724. region. Mikrobiologiia. 74: 642–653 (in Russian); English transla- Zhang, Q., C. Liu, Y. Tang, G. Zhou, P. Shen, C. Fang and A. Yokota. tion: Microbiology. 74: 557–566. 2007. Hymenobacter xinjiangensis sp. nov., a radiation-resistant bacte- Zhilina, T.N., D.G. Zavarzina, J. Kuever, A.M. Lysenko and G.A. Zavarzin. rium isolated from the desert of Xinjiang, China. Int. J. Syst. Evol. 2005. Desulfonatronum cooperativum sp. nov., a novel hydrogenotrophic, Microbiol. 57: 1752–1756. alkaliphilic, sulfate-reducing bacterium, from a syntrophic culture Zhang, T., X. Fan, S. Hanada, Y. Kamagata and H.H. Fang. 2006. Bacillus growing on acetate. Int. J. Syst. Evol. Microbiol. 55: 1001–1006. macauensis sp. nov., a long-chain bacterium isolated from a drinking Zhou, Y., X. Wang, H. Liu, K.Y. Zhang, Y.Q. Zhang, R. Lai and W.J. water supply. Int. J. Syst. Evol. Microbiol. 56: 349–353. Li. 2007. Pontibacter akesuensis sp. nov., isolated from a desert soil in Zhang, Y.Q., Y.G. Chen, W.J. Li, X.P. Tian, L.H. Xu and C.L. Jiang. China. Int. J. Syst. Evol. Microbiol. 57: 321–325. 2005a. Sphingomonas yunnanensis sp. nov., a novel gram-negative bac- Zhou, Y., J. Dong, X. Wang, X. Huang, K.Y. Zhang, Y.Q. Zhang, Y.F. Guo, terium from a contaminated plate. Int. J. Syst. Evol. Microbiol. 55: R. Lai and W.J. Li. 2007. Chryseobacterium flavum sp. nov., isolated 2361–2364. from polluted soil. Int. J. Syst. Evol. Microbiol. 57: 1765–1769. Zhang, Y.Q., W.J. Li, R.M. Kroppenstedt, C.J. Kim, G.Z. Chen, D.J. Park, Zhu, H.H., J. Guo, Q. Yao, S.Z. Yang, M.R. Deng, T.B. Phuong le, V.T. L.H. Xu and C.L. Jiang. 2005b. Rhodococcus yunnanensis sp. nov., a Hanh and M.J. Ryan. 2007. Streptomyces vietnamensis sp. nov., a strepto- mesophilic actinobacterium isolated from forest soil. Int. J. Syst. Evol. mycete with violet blue diffusible pigment isolated from soil in Viet- Microbiol. 55: 1133–1137. nam. Int. J. Syst. Evol. Microbiol. 57: 1770–1774. Zhang, Y.Q., P. Schumann, W.J. Li, G.Z. Chen, X.P. Tian, E. Stacke- Zitouni, A., L. Lamari, H. Boudjella, B. Badji, N. Sabaou, A. Gaouar, F. brandt, L.H. Xu and C.L. Jiang. 2005c. Isoptericola halotolerans sp. nov., Mathieu, A. Lebrihi and D.P. Labeda. 2004. Saccharothrix algeriensis a novel actinobacterium isolated from saline soil from Qinghai Prov- sp. nov., isolated from Saharan soil. Int. J. Syst. Evol. Microbiol. 54: ince, north-west China. Int. J. Syst. Evol. Microbiol. 55: 1867–1870. 1377–1381. Zhang, Y.Q., W.J. Li, K.Y. Zhang, X.P. Tian, Y. Jiang, L.H. Xu, C.L. Jiang Zurdo-Piñeiro, J.L., R. Rivas, M.E. Trujillo, N. Vizcaíno, J.A. Carrasco, and R. Lai. 2006. Massilia dura sp. nov., Massilia albidiflava sp. nov., M. Chamber, A. Palomares, P.F. Mateos, E. Martínez-Molina and E. Massilia plicata sp. nov. and Massilia lutea sp. nov., isolated from soils Velázquez. 2007. Ochrobactrum cytisi sp. nov., isolated from nodules of in China. Int. J. Syst. Evol. Microbiol. 56: 459–463. Cytisus scoparius in Spain. Int. J. Syst. Evol. Microbiol. 57: 784–788. Index of scientific names of Archaea and Bacteria

Key to the fonts and symbols used in this index: Nomenclature Lower case, Roman Genera, species, and subspecies of bacteria. Every bacterial name mentioned in the text is listed in the index. Specific epithets are listed individually and also under the genus.* CAPITALS, ROMAN: Names of taxa higher than genus (tribes, families, orders, classes, divisions, kingdoms). Pagination Roman: Pages on which taxa are mentioned. Boldface: Indicates page on which the description of a taxon is given.†

* Infrasubspecific names, such as serovars, biovars, and pathovars, are not listed in the index. † A description may not necessarily be given in the Manual for a taxon that is considered as incertae sedis or that is listed in an addendum or note added in proof; however, the page on which the complete citation of such a taxon is given is indicated in boldface type.

1423

Index of scientific names of Archaea and Bacteria

abactoclasticum (Anaeroplasma), 1313 Acidaminobacter, 6, 11, 1150, 1152, 1153 Aerococcus, 5, 512–514, 516, 533, 536, 541, Abiotrophia, 5, 512, 536, 541, 574–577, 594 Acidaminobacter hydrogenoformans, 1150, 575, 594, 611–613, 1134 Abiotrophia adiacens, 537, 574–577 1151, 1153, 1166, 1169 Aerococcus christensenii, 533, 534, 535, 1134 Abiotrophia balaenopterae, 575, 576, 578 Acidaminococcus, 11, 1059, 1063, 1067, 1072, Aerococcus sanguinicola, 533, 534, 535 Abiotrophia defectiva, 535, 537, 539, 542, 1081, 1083, 1088, 1089, 1116, 1169 Aerococcus urinae, 533, 534, 535, 1134 545, 560, 563, 564, 567, 574–577, 661 Acidaminococcus fermentans, 1061, 1067, Aerococcus urinaeequi, 514 Abiotrophia elegans, 575, 576, 578 1068, 1071, 1100, 1116 Aerococcus urinaehominis, 533, 534, 535, 1134 Abiotrophia para-adiacens, 575, 576, 578 acidaminophila (Anaeromusa), 1073, Aerococcus viridans, 533, 534, 535, 613, absonum (Clostridium), 6, 810, 869 1074, 1169 1133, 1134 Acetanaerobacterium, 10, 1016, 1019, 1022 acidaminophilum (Eubacterium), 788, 869, aerofaciens (Collinsella), 942 Acetanaerobacterium elongatum, 1019, 870, 872, 1150, 1166, 1169 Aeromonas hydrophila, 551 1020, 1024 acidaminovorans (Dethiosulfovibrio), Aeromonas salmonicida, 553 acetethylicum (Halanaerobium), 1192, 1197, 1171, 1172 aerophilus (Bacillus), 123, 128 1199, 1209 acidaminovorans (Selenomonas), 1166, 1169, aerotolerans (Clostridium), 8, 751, 753, 755, aceticum (Clostridium), 741, 747, 775, 776, 1176, 1177 765, 809, 815, 828, 990 895, 1249 acidaminovorans (Thermanaerovibrio), 836, aestuarii (Clostridium), 751, 777, 779 acetigena (Natroniella), 1191, 1192, 1207, 1109, 1166, 1169, 1176, 1177, 1178 agalactiae (Streptococcus), 21, 249, 655–657, 1215, 1216, 1219 acidiceler (Bacillus), 123 659, 660, 662, 684, 685, 711, 799 acetigenes (Sporanaerobacter), 850, 1143, acidicola (Bacillus), 4, 123 agaradhaerens (Bacillus), 5, 24, 33, 48, 51–55, 1144, 1145 acidifarinae (Lactobacillus), 474, 491 57, 78, 90 acetigenum (Thermoanaerobium), 1276, 1278 acidigallici (Pelobacter), 959 agarexedens (Paenibacillus), 121 acetigenus (Caldicellulosiruptor), 1275–1277, acidilactici (Pediococcus), 511, 513–517, 518, agaridevorans (Paenibacillus), 279 1278 519, 520, 611, 613, 633 aggregans (Eubacterium), 865, 867, 873, acetireducens (Clostridium), 747, 749, acidiphilum (Ferroplasma), 1123 897, 943 1138, 1166, 1169 acidiphilus (Alicyclobacillus), 230, 238, 239 agile (Anaerofilum), 962, 1022, 1023 Acetitomaculum, 8, 893, 921, 923, 926, 932, 944 acidipiscis (Lactobacillus), 476, 482, agilis (Lactobacillus), 468, 479, 492 Acetitomaculum ruminis, 923, 924, 962 483, 491 agrestis (Buttiauxella), 121 Acetivibrio, 6, 10, 1016, 1020, 1022 acidisoli (Clostridium), 750, 752, 798 agri (Bacillus), 70, 300, 312, 313 Acetivibrio cellulolyticus, 753, 754, 809, 819, aciditolerans (Clostridium), 750, 789, 790, agri (Brevibacillus), 308, 312, 313 824, 1020, 1021 793, 826 aidingensis (Halobacillus), 168 Acetivibrio cellulosolvens, 1021 aciditolerans (Thermoanaerobacterium), akagii (Clostridium), 750, 752, 798 Acetivibrio ethanolgignens, 1021 1279, 1284 akibai (Bacillus), 123 Acetivibrio multivorans, 1021 aciditrophicus (Syntrophus), 959 alactolyticum (Eubacterium), 904, 905 Acetoanaerobium, 11, 1190 ACIDOBACTERIA, 959, 1036 alactolyticus (Pseudoramibacter), 897, 900, Acetoanaerobium noterae, 1190 acidocaldarius (Alicyclobacillus), 152, 902–904, 905 Acetobacterium, 7, 865, 891, 896, 897, 900, 229–231, 237, 238, 239 alactolyticus (Streptococcus), 594, 678, 902, 904, 941, 1112, 1190, 1249, 1299 acidocaldarius (Bacillus), 70, 148, 152, 229, 685, 692 Acetobacterium bakii, 891–893, 894 234, 239 albidum (Brevibacterium), 571 Acetobacterium carbinolicum, 891–893, 894 acidocaldarius subsp. acidocaldarius albus (Marinococcus), 166, 178, 179, 180 Acetobacterium fimetarium, 891–893, 894 (Alicyclobacillus), 237, 238 albus (Ruminococcus), 10, 1016, 1025, 1040 Acetobacterium malicum, 892, 893, 894 acidocaldarius subsp. rittmannii albus (Streptomyces), 659 Acetobacterium paludosum, 891–893, 895 (Alicyclobacillus), 237, 238 alcalescens (Veillonella), 1063, 1100 Acetobacterium psammolithicum, 895 acidominimus (Streptococcus), 655, 660, 678, alcalescens subsp. alcalescens (Veillonella), Acetobacterium tundrae, 891, 895 683, 690, 693, 703 1064 Acetobacterium wieringae, 891, 892, 895 acidophilus (Lactobacillus), 469, 471, 474, alcalescens subsp. criceti (Veillonella), 1064 Acetobacterium woodii, 891–893, 894, 904, 476, 477, 481, 491, 493–495, 498, 500 alcalescens subsp. dispar (Veillonella), 1064 1000, 1156 acidophilus (Sulfobacillus), 1182, 1183 alcalescens subsp. ratti (Veillonella), 1065 acetobutylicum (Clostridium), 182, 737, 749, acidoterrestris (Alicyclobacillus), 67, 152, alcaliphilum (Halanaerobium), 1195, 771, 808, 1282 230, 231, 237, 239 1197, 1199 acetoethylicus (Halobacteroides), 1197, acidoterrestris (Bacillus), 67, 69, 70, 152, alcalophilus (Bacillus), 4, 24, 33, 48, 51–55, 1199, 1209 229, 239 57, 69, 78, 90, 105, 112, 119, 914 acetoethylicus (Thermoanaerobacter), acidovorans (Sporomusa), 1114 aldenense (Clostridium), 752, 767 1233, 1272 acidurici (Clostridium), 750, 806, 839, aldrichii (Clostridium), 10, 752, 754, 819, 824 acetoethylicus (Thermobacteroides), 850, 1144 algicola (Bacillus), 48, 52, 78, 90 1233, 1272 ACTINOBACTERIA, 866, 867, 1188, algidicarnis (Clostridium), 753, 806 Acetogenium, 893, 1190 1189, 1299 algidixylanolyticum (Clostridium), 751, 753 Acetogenium kivui, 1235 Actinomyces, 865, 866 algidus (Lactobacillus), 474, 476, 481, Acetohalobium, 11, 1196, 1207, 1208, ACTINOMYCETALES, 1299 483, 492 1209, 1216 ACTINOMYCETES, 442 alginolyticus (Bacillus), 70, 279 Acetohalobium arabaticum, 1192, 1207, adiacens (Abiotrophia), 537, 574–577 alginolyticus (Paenibacillus), 269, 278, 279 1210, 1221 adiacens (Granulicatella), 574, 575, 577, 661 ALICYCLOBACILLACEAE, 3, 4, 10, 11, 20, Acetonema, 11, 1059, 1065, 1103 adjacens (Streptococcus), 537, 574, 575, 577 229, 336, 1044, 1181 Acetonema longum, 1036, 1065, 1066, 1067 aegyptius (Thermicanus), 454, 1250 Alicyclobacillus, 4, 21, 49, 61, 67, 70, 229, 301, acetotolerans (Lactobacillus), 476, 491, 512 aeolius (Bacillus), 33, 51, 72 312, 1182, 1183 acetoxidans (Desulfotomaculum), 986, 990 aerius (Bacillus), 123, 128 Alicyclobacillus acidiphilus, 230, 238, 239 acetylicum (Brevibacterium), 462, 571 aerivorans (Sporomusa), 1114 Alicyclobacillus acidocaldarius, 152, 229–231, acetylicum (Exiguobacterium), 460–462, 463 AEROCOCCACEAE, 5, 464, 533, 567 237, 238, 239

1425 1426 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA

Alicyclobacillus acidocaldarius subsp. altitudinis (Bacillus), 123 Anaerofustis, 7, 865, 897 acidocaldarius, 237, 238 alveayuensis (Bacillus), 123 Anaerofustis stercorihominis, 897, 899, 900 Alicyclobacillus acidocaldarius subsp. alvei (Bacillus), 69, 70, 280 Anaeroglobus, 11, 1059, 1063, 1069, 1071, rittmannii, 237, 238 alvei (Paenibacillus), 271, 280 1081, 1083, 1088 Alicyclobacillus acidoterrestris, 67, 152, 230, amelibiosum (Leuconostoc), 630, 632 Anaeroglobus geminatus, 1071, 1072, 1073, 231, 237, 239 Aminiphilus, 1172 1081, 1083 Alicyclobacillus contaminans, 230, 231, 237, Aminobacterium, 10, 11, 836, 1044, 1150, Anaeromusa, 11, 1059, 1070, 1073 238, 239 1165, 1169–1172, 1174, 1177 Anaeromusa acidaminophila, 1073, 1074, 1169 Alicyclobacillus cycloheptanicus, 152, 230, Aminobacterium colombiense, 1165, 1166, Anaeroplasma abactoclasticum, 1313 231, 235, 238, 239, 330 1167, 1178 Anaerorhabdus, 939 Alicyclobacillus disulfidooxidans, 230, 231, Aminobacterium mobile, 1165, 1167, Anaerosinus, 11, 1059, 1066, 1074, 1079 235, 237, 238, 240, 1183 1169–1173 Anaerosinus glycerini, 1074, 1075 Alicyclobacillus fastidiosus, 230, 238, 240 Aminomonas, 10, 11, 1044, 1150, 1166, 1167, Anaerosporobacter mobilis, 802 Alicyclobacillus herbarius, 230, 231, 238, 240 1171, 1172, 1174, 1177 Anaerostipes, 8, 921, 924, 926, 944 Alicyclobacillus hesperidum, 230, 238, 240 Aminomonas paucivorans, 1150, 1166–1169, Anaerostipes caccae, 924, 925 Alicyclobacillus kakegawensis, 230, 231, 1170 Anaerotruncus, 10, 1016, 1022, 1023 238, 241 aminophilum (Clostridium), 754, 931, Anaerotruncus colihominis, 1019, 1024 Alicyclobacillus macrosporangiidus, 230, 231, 1166, 1169 Anaerovibrio, 11, 1059, 1070, 1074, 1075, 1078 237, 238, 241 aminovalericum (Clostridium), 754, 765, 828 Anaerovibrio burkinabensis, 1069–1071 Alicyclobacillus pomorum, 230, 231, 237, ammoniagenes (Brevibacterium), 571 Anaerovibrio glycerini, 1074, 1075 238, 241 Ammonifex, 11, 1225, 1240, 1258 Anaerovibrio lipolyticus, 1070, 1074, Alicyclobacillus sacchari, 230, 238, 241 Ammonifex degensii, 1240, 1241, 1258 1075, 1077 Alicyclobacillus sendaiensis, 230, 238, 241 Ammoniphilus, 4, 71, 269, 296 Anaerovorax, 7, 11, 1156, 1159 Alicyclobacillus shizuokensis, 230, 231, Ammoniphilus oxalaticus, 296, 297 Anaerovorax odorimutans, 1156, 1157 238, 242 Ammoniphilus oxalivorans, 297 Aneurinibacillus, 4, 21, 61, 70, 269, 297, 298, Alicyclobacillus tolerans, 230, 231. 235, 237, Amphibacillus, 4, 20, 32, 71, 130, 166, 167, 305, 308, 311, 312 238, 242, 1183 171, 176, 181, 183, 185, 187, 196, 387 Aneurinibacillus aneurinilyticus, 121, 298, Alicyclobacillus vulcanalis, 230, 238, 242 Amphibacillus fermentum, 131, 132, 133, 187 299, 301 alimentarius (Jeotgalibacillus), 24, 70, 183, Amphibacillus tropicus, 131, 132, 133, 187 Aneurinibacillus danicus, 299, 301, 308, 312 364, 365, 371 Amphibacillus xylanus, 131, 132, 161, 169, 187 Aneurinibacillus migulanus, 299, 300, 301, 308 alimentarius (Lactobacillus), 474, 476, amygdalinum (Clostridium), 751, 753, 754, Aneurinibacillus terranovensis, 299, 301 492, 505 785, 791, 809 Aneurinibacillus thermoaerophilus, 152, Alkalibacillus, 4, 20, 24, 33, 71, 128, 181, amyloliquefaciens (Bacillus), 4, 42, 48, 49, 52, 298–301, 305 183, 191 72, 78, 90, 121 aneurinilyticus (Aneurinibacillus), 121, 298, Alkalibacillus filiformis, 129 amylolyticum (Clostridium), 751, 753, 754, 299, 301 Alkalibacillus haloalkaliphilus, 128, 129 785, 791, 809 aneurinilyticus (Bacillus), 70 Alkalibacillus halophilus, 129 amylolyticus (Anoxybacillus), 134–136, 139 anginosus (Streptococcus), 663, 686, 707 Alkalibacillus salilacus, 129 amylolyticus (Bacillus), 62, 70, 280 anguillarum (Vibrio), 553 Alkalibacillus silvisoli, 129 amylolyticus (Lactobacillus), 492 angustum (Eubacterium), 751, 839, 850, 867, Alkalibacter, 7, 865, 896, 901 amylolyticus (Paenibacillus), 96, 280, 291 875, 1144 Alkalibacter saccharofermentans, 896, 897, amylophilus (Lactobacillus), 469, 492 animalis (Lactobacillus), 472, 480, 482, 493, 899, 901, 903, 1161 amylovorus (Lactobacillus), 474, 491, 492, 498 503 Alkalibacterium, 6, 172, 173, 186–188, 512, anaericanus (Paenibacillus), 280 Anoxybacillus, 4, 20, 71, 134, 145, 157, 159 557, 559, 560, 566–568, 582 Anaeroarcus, 11, 1059, 1069, 1073 Anoxybacillus amylolyticus, 134–136, 139 Alkalibacterium iburiense, 558, 559, 582 Anaeroarcus burkinensis, 1069, 1070, 1071 Anoxybacillus ayderensis, 134–136, 139 Alkalibacterium indicireducens, 558, 559 Anaerobacter, 6, 736, 737, 802, 830, 847 Anoxybacillus contaminans, 134–136, 139 Alkalibacterium olivapovliticus, 169, 557, 558 Anaerobacter polyendosporus, 736, 784, 802, Anoxybacillus flavithermus, 71, 121, 134–136, Alkalibacterium psychrotolerans, 558, 582 830, 831 140, 152, 159 alkalicellulosi (Clostridium), 10, 753, 819, 824 Anaerobaculum, 10, 11, 1044, 1166, 1167, Anoxybacillus gonensis, 134–136, 140 alkaliphilum (Desulfotomaculum), 990, 991 1169, 1170, 1174–1177 Anoxybacillus kamchatkensis, 134–136, 140 Alkaliphilus, 6, 737, 828, 832 Anaerobaculum mobile, 1166, 1174 Anoxybacillus kestanbolensis, 134–136, 140 alkaliphilus (Salinicoccus), 427 Anaerobaculum thermoterrenum, 1166, Anoxybacillus pushchinoensis, 134–136, 139 Alkaliphilus crotonatoxidans, 737, 829, 837 1169–1172, 1173, 1177 Anoxybacillus rupiensis, 134–136, 141 Alkaliphilus metalliredigens, 829, 830 anaerobius (Peptostreptococcus), 870, Anoxybacillus voinovskiensis, 134–136, 141 Alkaliphilus transvaalensis, 737, 829, 837, 1153 876, 950, 1008, 1011, 1029, 1030, 1137, Anoxynatronum, 6, 737, 831, 834 alkaliterrae (Paenibacillus), 280 1138, 1166 Anoxynatronum sibiricum, 831, 832, 833 alkanoclasticum (Planomicrobium), Anaerobranca, 11, 1044, 1056, 1161, antarcticum (Desulfotomaculum), 991, 994 373–375, 383 1163, 1287 antarcticum (Exiguobacterium), 461, 462, 463 alkanoclasticus (Planococcus), 374, 375 Anaerobranca californiensis, 1163 antarcticus (Paenibacillus), 280 Allisonella, 11, 1059, 1068 Anaerobranca gottschalkii, 1163, 1164 antarcticus (Planococcus), 348, 350, 353 Allisonella histaminiformans, 1068, 1069, 1083 Anaerobranca horikoshii, 1161, 1163 anthracis (Bacillus), 4, 21, 26, 27, 29, 34–44, Allobaculum, 12, 1299, 1306 Anaerococcus, 11, 969, 971, 1008, 1029, 47, 50–52, 64, 66–70, 78, 92, 96, 110, Allobaculum stercoricanis, 1306, 1307 1130, 1143 119, 120 Allofustis, 6, 512, 559, 561, 566, 567 Anaerococcus hydrogenalis, 1130 antri (Lactobacillus), 477, 493 Allofustis seminis, 559, 560, 566, 568 Anaerococcus lactolyticus, 1130 aotearoense (Thermoanaerobacterium), Alloiococcus, 6, 512, 534, 557, 562, 566, 567, Anaerococcus octavius, 1131 1237, 1279, 1282, 1284, 1296, 1297 573, 594 Anaerococcus prevotii, 1130, 1137, 1140 apiarius (Paenibacillus), 121, 269, 281 Alloiococcus otitis, 543, 559, 560, 562, 563, Anaerococcus tetradius, 1131 Aquaspirillum, 1109 566, 568, 573, 582 Anaerococcus vaginalis, 1131 aquaticus (Thermus), 136, 854 alocis (Filifactor), 1013 Anaerofilum, 10, 962, 1016, 1019, 1022, 1024, Aquifex, 1273 alocis (Fusobacterium), 1013 1039, 1040 Aquifex pyrophilus, 1273 alterfunditum (Carnobacterium), 549, 550, Anaerofilum agile, 962, 1022, 1023 AQUIFICAE, 1172 552–554, 555, 582 Anaerofilum pentosovorans, 962, 1022, 1023 aquimarina (Sporosarcina), 377, 378 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1427 aquimarinus (Enterococcus), 602 azorensis (Caloranaerobacter), 839, 840, 850, Bacillus cellulosilyticus, 124 aquimaris (Bacillus), 4, 52, 56, 78, 93, 127 901, 903, 1144, 1145 Bacillus centrosporus, 70, 300, 312, 313 arabaticum (Acetohalobium), 1192, 1207, Azotobacter, 51 Bacillus cereus, 21, 26, 27, 29–31, 33–42, 1210, 1221 azotofixans (Paenibacillus), 48, 273, 279, 44–50, 52, 53, 60, 64–70, 78, 92, 95, 110, arboris (Propionispira), 979, 1060, 1079, 285, 292 113, 119–121, 153, 278, 299, 310 1102, 1103, 1119 azotoformans (Bacillus), 33, 52, 94 Bacillus chagannorensis, 124 Archaeoglobus, 1271 Bacillus chitinolyticus, 4, 49, 283 Archaeoglobus fulgidus, 1068 BACILLACEAE, 3, 4, 5, 20, 22, 67, 68, 128, Bacillus chondroitinus, 70, 283 arcticum (Clostridium), 755 132, 169, 176, 183, 186, 189, 191, 193, Bacillus choshinensis, 70, 300, 312, 313 arcticum (Desulfotomaculum), 994, 999 195, 298, 365, 460, 584, 971, 1185, 1188 Bacillus cibi, 124, 125 arenosi (Bacillus), 71, 123, 124 BACILLALES, 2, 3, 5, 12, 19, 20, 169, 336, Bacillus circulans, 27, 29, 31–32, 38, 40, 42, arenosi (Viridibacillus), 123 386, 388, 434, 435, 442, 454, 457, 460, 46, 48–50, 53, 62, 65, 68–71, 96, 99, 107, argentinense (Clostridium), 755, 761, 812 1282, 1299 108, 271, 280, 283, 287, 289, 291, 294 argentinum (Leuconostoc), 627–629, 631 BACILLI, 1, 2, 4, 5, 19, 131, 163, 166, 169, Bacillus clarkii, 24, 33, 53, 78, 96 argillaceus (Geobacter), 1128 229, 269, 296, 297, 317, 319, 365, 371, Bacillus clausii, 24, 33, 46, 53, 97 Arhodomonas, 193 392, 423, 516, 580, 904, 939, 946, 962, Bacillus coagulans, 26, 33, 34, 38, 46, 48–50, arlettae (Staphylococcus), 398, 401, 406, 419 1044, 1093, 1309 53, 58, 65, 66, 97 arseniciselenatis (Bacillus), 33–35, 48, 49, 52, Bacillus, 3, 4, 5, 19, 20, 21, 79–89, 91, 96, 102, Bacillus cohnii, 26, 33, 48, 53, 78, 97 58, 61, 78, 93 131, 132, 142, 145–148, 153, 163, 166, Bacillus curdlanolyticus, 70, 284 arsenicus (Bacillus), 4, 123, 124 167, 169, 171, 173, 175, 185, 188, 191, Bacillus cycloheptanicus, 70, 152, 229, 239 artemidis (Selenomonas), 1107, 1110 196, 199, 203, 229, 249, 250, 252, 258, Bacillus decisifrondis, 124 Arthrobacter, 571 259, 278, 297, 299, 301, 307, 308, 317, Bacillus decolorationis, 48, 53, 98 Arthromitus (Candidatus), 49 319, 329–331, 340, 344, 349, 354, 356, Bacillus dipsosauri, 70, 160, 162, 163, 196 arvi (Bacillus), 71, 123, 124 359–361, 363–365, 374, 378, 454, 462, Bacillus drentensis, 53, 98 arvi (Viridibacillus), 124 584, 655, 761, 793, 1185, 1192, 1193, Bacillus edaphicus, 4, 48, 71, 122 asaccharolyticus (Peptococcus), 1136 1253, 1280, 1283 Bacillus ehimensis, 49, 285 asaccharolyticus (Peptoniphilus), 1009, 1011, Bacillus acidiceler, 123 Bacillus endophyticus, 48, 49, 53, 78, 98 1030, 1136, 1137 Bacillus acidicola, 4, 123 Bacillus farraginis, 4, 53–54, 99 asaccharolyticus (Peptostreptococcus), 899, Bacillus acidocaldarius, 70, 148, 152, 229, Bacillus fastidiosus, 33, 36, 48, 54, 78, 99 1008, 1068, 1136 234, 239 Bacillus firmus, 4, 33, 48, 54, 65, 69, 78, 96, asahii (Bacillus), 4, 52, 93 Bacillus acidoterrestris, 67, 69, 70, 152, 229, 239 99, 107, 108, 113, 125 asini (Enterococcus), 602 Bacillus aeolius, 33, 51, 72 Bacillus flexus, 4, 48, 54, 100, 109, 121, 125 asparagiforme (Clostridium), 752, 755, 756, Bacillus aerius, 123, 128 Bacillus foraminis, 124 759, 767, 768, 949 Bacillus aerophilus, 123, 128 Bacillus fordii, 4, 53, 54, 100 asporophorigenens (Mechercharimyces), 20, Bacillus agaradhaerens, 5, 24, 33, 48, 51–55, Bacillus formosus, 70, 300, 312, 314 434, 446 57, 78, 90 Bacillus fortis, 4, 53, 54, 101 assamensis (Paenibacillus), 281 Bacillus agri, 70, 300, 312, 313 Bacillus fumarioli, 4, 21, 31, 33, 34, 42, 47, 48, Atopobacter, 6, 512, 563, 576, 577 Bacillus akibai, 123 50, 51, 54, 60, 67, 78, 101, 120, 284, 299, Atopobacter phocae, 563, 564, 565, 576 Bacillus alcalophilus, 4, 24, 33, 48, 51–55, 57, 308, 311 Atopobium, 661, 1008 69, 78, 90, 105, 112, 119, 914 Bacillus funiculus, 4, 48, 54, 101 Atopococcus, 6, 512, 565, 567, 568 Bacillus algicola, 48, 52, 78, 90 Bacillus fusiformis, 5, 24, 33, 54, 68, 71, 78, Atopococcus tabaci, 565, 566 Bacillus alginolyticus, 70, 279 101, 103, 111, 114, 115, 117, 121 Atopostipes, 6, 512, 566 Bacillus altitudinis, 123 Bacillus galactophilus, 70, 312, 313 Atopostipes suicloacalis, 566, 567, 568 Bacillus alveayuensis, 123 Bacillus galactosidilyticus, 4, 54, 103, 127 atrophaeus (Bacillus), 4, 52, 71, 72, 78, 93, Bacillus alvei, 69, 70, 280 Bacillus gelatini, 4, 54, 103 110, 119 Bacillus amyloliquefaciens, 4, 42, 48, 49, 52, Bacillus gibsonii, 4, 24, 33, 54, 78, 103 atypica (Veillonella), 1062, 1063, 1064 72, 78, 90, 121 Bacillus globisporus, 24, 70, 359, 361, 371, aurantiacum (Exiguobacterium), 186, Bacillus amylolyticus, 62, 70, 280 378, 379 460–462, 463 Bacillus aneurinilyticus, 70 Bacillus globisporus subsp. marinus, 371 aurantibutyricum (Clostridium), 756, 775, 827 Bacillus anthracis, 4, 21, 26, 27, 29, 34–44, 47, Bacillus glucanolyticus, 70, 96, 286 Aureobacterium, 571 50–52, 64, 66–70, 78, 92, 96, 110, 119, 120 Bacillus gordonae, 70 aureus (Staphylococcus), 26, 182, 246, 249, Bacillus aquimaris, 4, 52, 56, 78, 93, 127 Bacillus halmapalus, 26, 33, 54, 105 392, 393, 397–399, 400, 408, 410, 414, Bacillus arenosi, 71, 123, 124 Bacillus haloalkaliphilus, 24, 33, 48, 71, 128, 418, 660, 684, 714, 930, 1133 Bacillus arseniciselenatis, 33–35, 48, 49, 52, 129, 167 aureus subsp. anaerobius (Staphylococcus), 58, 61, 78, 93 Bacillus halodenitrificans, 33, 48, 176, 183, 392, 393, 401, 416 Bacillus arsenicus, 4, 123, 124 195, 200 aureus subsp. aureus (Staphylococcus), Bacillus arvi, 71, 123, 124 Bacillus halodurans, 4, 35–37, 48, 54, 78, 400, 416 Bacillus asahii, 4, 52, 93 105, 182 auricularis (Staphylococcus), 398, 401, 423 Bacillus atrophaeus, 4, 52, 71, 72, 78, 93, Bacillus halophilus, 4, 33, 48, 54, 71, 105, auripigmenti (Desulfosporosinus), 983–987 110, 119 166, 167 auripigmentum (Desulfotomaculum), 983, Bacillus axarquiensis, 124 Bacillus hemicellulosilyticus, 124 986, 987 Bacillus azotoformans, 33, 52, 94 Bacillus herbersteinensis, 125 australicum (Desulfotomaculum), 994 Bacillus badius, 4, 33, 38, 48–50, 52, 61, 65, Bacillus horikoshii, 4, 24, 33, 55, 105 australiensis (Mahella), 1296, 1297, 1298 66, 78, 94, 121, 300, 312 Bacillus horti, 33, 55, 78, 106 australiensis (Quatrionicoccus), 1297 Bacillus barbaricus, 48, 52, 94, 125 Bacillus humi, 125 australis (Streptococcus), 676, 677, 686 Bacillus bataviensis, 52, 53, 57, 58, 60, 94 Bacillus hwajinpoensis, 55, 106 aviarius (Lactobacillus), 482, 493 Bacillus benzoevorans, 4, 33, 53, 95 Bacillus idriensis, 125 aviarius subsp. araffinosus (Lactobacillus), 493 Bacillus bogoriensis, 124 Bacillus indicus, 48, 55, 78, 106 aviarius subsp. aviarius (Lactobacillus), 493 Bacillus boroniphilus, 124 Bacillus infantis, 125 avium (Enterococcus), 594–597, 602 Bacillus borstelensis, 70, 300, 312, 313 Bacillus infernus, 4, 34, 35, 47, 48, 55, 61, 64, axarquiensis (Bacillus), 124 Bacillus brevis, 69, 70, 298–300, 305, 308, 68, 78, 106, 1185 ayderensis (Anoxybacillus), 134–136, 139 310–312, 315 Bacillus insolitus, 24, 33, 34, 48, 49, 55, 57, 78, azoreducens (Paenibacillus), 281, 285 Bacillus carboniphilus, 4, 33, 48, 53, 78, 95 107, 113, 114, 361, 365 1428 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA

Bacillus jeotgali, 4, 33, 55, 78, 107 Bacillus pseudomycoides, 50, 57, 78, 96, 110, Bacillus thermosphaericus, 24, 70, 152, 381 Bacillus kaustophilus, 70, 152, 153, 155, 159 113, 119 Bacillus thiaminolyticus, 70, 293 Bacillus kobensis, 70, 287 Bacillus psychrodurans, 24, 33, 34, 78, 113, 365 Bacillus thioparans, 128 Bacillus koreensis, 125 Bacillus psychrophilus, 24, 54, 70, 359, 361, Bacillus thuringiensis, 21, 23, 26, 27, 31, 32, Bacillus kribbensis, 125 378, 380 34, 35, 37–41, 42, 44–50, 59–61, 64, 67, Bacillus krulwichiae, 4, 55, 78, 107, 123, Bacillus psychrosaccharolyticus, 34, 57, 113, 121 70, 78, 92, 96, 104, 110, 118, 121, 273 126, 128 Bacillus psychrotolerans, 24, 33, 34, 78, 113 Bacillus tusciae, 4, 21, 33, 34, 48, 60, 78, 119, Bacillus laevolacticus, 21, 33, 38, 71, 121, 386, Bacillus pulvifaciens, 70, 308, 310 152, 153 388, 390 Bacillus pumilus, 21, 26, 27, 33, 34, 36, 42, 45, Bacillus validus, 62, 70, 293 Bacillus larvae, 33, 70, 288, 308 46, 48, 49, 57, 65, 69–71, 78, 108, 114, Bacillus vallismortis, 59, 60, 71, 72, 78, 94, Bacillus laterosporus, 69, 70, 308, 310, 311, 314 119, 123, 129 110, 119 Bacillus lautus, 62, 69, 70, 288 Bacillus pycnus, 33, 34, 57, 78, 111, 114, Bacillus vedderi, 26, 33, 48, 60, 78, 119 Bacillus lehensis, 125 117, 365 Bacillus velezensis, 128 Bacillus lentimorbus, 33, 70, 289 Bacillus qingdaonensis, 127 Bacillus vietnamensis, 60, 120 Bacillus lentus, 42, 48, 49, 55, 61, 62, 69, 96, Bacillus reuszeri, 70, 300, 312, 316 Bacillus vireti, 60, 120 97, 99, 105, 107 Bacillus ruris, 127 Bacillus vulcani, 152, 153, 159 Bacillus licheniformis, 23, 26, 27, 32–34, Bacillus safensis, 127 Bacillus wakoensis, 128 37–39, 42, 45, 46, 48, 49, 53, 55, 58, Bacillus salarius, 127 Bacillus weihenstephanensis, 48, 60, 78, 96, 59, 65, 70, 71, 78, 108, 117, 123, 128, Bacillus salexigens, 70, 196, 203 110, 119, 120 153, 278 Bacillus saliphilus, 127 BACTERIA, 2, 19, 321, 842, 849, 850, 959, Bacillus litoralis, 125, Bacillus schlegelii, 4, 21, 33, 34, 48, 57, 60, 78, 1034, 1036, ,1140, 1152, 1153, 1192, Bacillus luciferensis, 48, 50, 55, 58, 108 114, 148, 153 1202, 1221, 1271, 1274 Bacillus macauensis, 125 Bacillus selenitireducens, 33, 35, 48, 58, 68, Bacterium budayi, 876 Bacillus macerans, 69, 70, 289 78, 115 Bacterium chauvoei, 767 Bacillus macquariensis, 70, 289 Bacillus seohaeanensis, 127 Bacterium clostridiiforme, 767 Bacillus macyae, 48, 56, 108 Bacillus selenatarsenatis, 127 Bacterium curvatum, 495 Bacillus malacitensis, 124, 125, 126 Bacillus shackletonii, 50, 58, 115 Bacterium cylindroides, 878 Bacillus mannanilyticus, 126 Bacillus silvestris, 33, 58, 115, 365 Bacterium incertum, 568, 569, 571, 572 Bacillus marinus, 24, 70, 371 Bacillus simplex, 50, 58, 109, 115, 121, Bacterium lactis, 711, 718 Bacillus marisflavi, 52, 56, 78, 127 122, 126 Bacterium monocytogenes, 253, 255 Bacillus marismortui, 70, 195–197, 200, 202 Bacillus siralis, 33, 48, 58, 116 Bacterium pneumosintes, 1080, 1082 Bacillus massiliensis, 126 Bacillus smithii, 34, 48, 50, 58, 116, 153 Bacterium rhusiopathiae, 1305 Bacillus megaterium, 21, 24, 26, 27, 30, 31, Bacillus soli, 58, 116 Bacterium welchii, 799 33, 34, 36, 42, 48, 49, 54, 56, 64–66, 69, Bacillus sonorensis, 58, 59, 78, 117, 123 Bacterium zopfii, 370 70, 78, 109, 121, 125, 153, 299, 310 Bacillus sphaericus, 23, 24, 26, 27, 32–36, BACTEROIDACEAE, 939, 946, 1049, 1093, Bacillus methanolicus, 33, 34, 48, 56, 78, 38–40, 46–49, 54, 56–58, 65, 66, 69, 70, 1094, 1096, 1098 109, 312 78, 101, 103, 111, 114, 115, 117, 121, 126, Bacteroides, 939, 946, 1093, 1096, 1098, 1146 Bacillus migulanus, 70, 298, 300, 301, 312 299, 310, 365, 462 Bacteroides capillosus, 795 Bacillus mojavensis, 56, 59, 71, 72, 78, 94, 109, Bacillus sporothermodurans, 33, 34, 38, 39, Bacteroides multiacidus, 1092, 1093 119, 124, 126 48, 57, 59, 117 Bacteroides praeacutus, 1146 Bacillus mucilaginosus, 4, 48, 71, 122 Bacillus stearothermophilus, 70, 144, 148, Bacteroides ruminicola, 929 Bacillus muralis, 126 152–154, 191 baculata (Heliorestis), 914, 919 Bacillus murimartini, 126 Bacillus stratosphericus, 123, 127–128 badius (Bacillus), 4, 33, 38, 48–50, 52, 61, 65, Bacillus mycoides, 26, 27, 38, 39, 44, 46, Bacillus subterraneus, 34, 35, 47, 48, 59, 66, 78, 94, 121, 300, 312 48–50, 56, 57, 61, 78, 96, 110, 113, 78, 118 bakii (Acetobacterium), 891–893, 894 119–121 Bacillus subtilis, 4, 21, 23, 24, 26, 27, 29, balaenopterae (Abiotrophia), 575, 576, 578 Bacillus naganoensis, 33, 56, 78, 110 30, 32–38, 40, 42, 45–50, 52, 58–61, 64, balaenopterae (Granulicatella), 574, 575, Bacillus nealsonii, 56, 110 65, 68–71, 72, 78, 89, 93, 94, 108, 110, 578, 661 Bacillus neidei, 33, 34, 56, 57, 71, 78, 111, 119, 128, 131, 166, 169, 182, 238, 244, baratii (Clostridium), 756–757, 770, 801, 810 114, 117, 365 249, 252, 278, 299, 301, 310, 312, 317, barbaricus (Bacillus), 48, 52, 94, 125 Bacillus niabensis, 126 319, 344, 473, 899, 914, 972, 979, 1162, barcinonensis (Paenibacillus), 281 Bacillus niacini, 33, 34, 57, 111 1232, 1283 barengoltzii (Paenibacillus), 281 Bacillus novalis, 57, 111 Bacillus subtilis subsp. spizizenii, 59, 71, 72, barkeri (Clostridium), 875, 904, 1299 Bacillus odysseyi, 57, 111 94, 110, 119 barkeri (Eubacterium), 865, 867, 875, 897, Bacillus okhensis, 126 Bacillus subtilis subsp. subtilis, 71, 72, 94, 110, 904, 943 Bacillus okuhidensis, 33, 34, 48, 57, 78, 112 119, 1283 barnesae (Gallicola), 1132, 1137, 1140 Bacillus oleronius, 48, 49, 57, 112, 312 Bacillus taeanensis, 128 barnesae (Peptostreptococcus), 1008, 1132 Bacillus oshimensis, 126 Bacillus tequilensis, 21, 123, 128 bartlettii (Clostridium), 10, 757, 779, 784, Bacillus pabuli, 62, 70, 290 Bacillus thermantarcticus, 48, 71, 122, 152, 789, 791 Bacillus pallidus, 4, 152, 153, 156 153, 159 bataviensis (Bacillus), 52, 53, 57, 58, 60, 94 Bacillus panaciterrae, 126 Bacillus thermoaerophilus, 70, 152, 153, bavaricus (Lactobacillus), 465, 508 Bacillus pantothenticus, 70, 194, 196, 200, 203 300, 305 beijerinckii (Clostridium), 741, 756, 757, 762, Bacillus parabrevis, 70, 300, 312, 315 Bacillus thermoamylovorans, 34, 59, 61, 64, 767, 772, 805, 809, 810, 827 Bacillus pasteurii, 24, 33, 69, 70, 361, 378, 78, 118, 152, 153 benzoevorans (Bacillus), 4, 33, 53, 95 380, 462 Bacillus thermocatenulatus, 70, 148, 152, 153, bergeri (Gemella), 456, 457, 458 Bacillus patagoniensis, 126, 127 157, 159 berrensis (Thermohalobacter), 738, 839, Bacillus peoriae, 70, 291 Bacillus thermocloacae, 4, 33, 34, 48, 59, 78, 840, 848, 849, 850, 901, 902, 1144, 1145, Bacillus plakortidis, 127 118, 152, 153 1192, 1203 Bacillus pocheonensis, 127 Bacillus thermodenitrificans, 70, 148, 152, 157 BETAPROTEOBACTERIA, 1269 Bacillus polymyxa, 31, 42, 69, 70, 269, 279 Bacillus thermoglucosidasius, 70, 152, 157 bifermentans (Clostridium), 46, 758, 772, Bacillus popilliae, 33, 42, 70, 292 Bacillus thermoleovorans, 70, 121, 152, 153, 776, 789, 794, 813, 814 Bacillus pseudalcaliphilus, 26, 112 156–159 bifermentans (Lactobacillus), 476, 483, 493 Bacillus pseudofirmus, 26, 33, 48, 57, 78 Bacillus thermoruber, 70, 152, 316 Bifidobacterium, 866, 1038, 1085, 1312, 1313 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1429 biforme (Eubacterium), 12, 661, 710, 869, brockii (Thermoanaerobacter), 1166, 1225, Caldicellulosiruptor saccharolyticus, 875, 1299 1226, 1229–1231, 1233, 1234 1275–1277, 1278 bogoriensis (Bacillus), 124 brockii (Thermoanaerobium), 1233, 1234 caldoproteolyticus (Geobacillus), 153, 160 bolteae (Clostridium), 752, 756, 758, 767, brockii subsp. brockii (Thermoanaerobacter), caldoxylosilyticus (Geobacillus), 146, 147, 768, 820, 949 1166, 1225, 1229–1231, 1233, 1234 153, 154 boraciitolerans (Gracilibacillus), 160, 161, brockii subsp. finnii (Thermoanaerobacter), caldoxylosilyticus (Saccharococcus), 153, 154 162, 163 1225, 1226, 1229, 1231, 1234 californiensis (Anaerobranca), 1163 borealis (Paenibacillus), 271, 273, 282 brockii subsp. lactiethylicus californiensis (Tindallia), 837, 851, 852, 854 boroniphilus (Bacillus), 124 (Thermoanaerobacter), 1226, 1234 callanderi (Eubacterium), 865, 867, 876, 897, boronitolerans (Lysinibacillus), 115 bromii (Ruminococcus), 1016, 1025, 1040 904, 943 borstelensis (Bacillus), 70, 300, 312, 313 Brucella, 562, 573, 752, 757, 759, 767, 771, callidus (Ruminococcus), 1016, 1025, 1040 borstelensis (Brevibacillus), 308, 313 900, 1024, 1028, 1099, 1113, 1315 Caloramator, 6, 771, 834, 843, 848 botulinum (Clostridium), 715, 755, 759, brunensis (Macrococcus), 425 Caloramator celer, 738, 740, 834, 836, 837, 848 764, 780, 794, 795, 799, 816, 817, 827, Bryantella, 8, 921, 924, 925, 944 Caloramator coolhaasii, 834, 836, 837 878, 914 Bryantella formatexigens, 924, 926, 927 Caloramator fervidus, 834, 835, 836, 848, bovicus (Macrococcus), 423, 424 bryantii (Clostridium), 1052, 1053 1249, 1250 bovis (Lachnobacterium), 946, 947, 955, bryantii (Methanobacterium), 1045 Caloramator indicus, 834–836, 838, 848 962, 968 bryantii (Syntrophospora), 998, 1048, Caloramator proteoclasticus, 834, 836, bovis (Streptococcus), 477, 594, 597, 655, 1052, 1053 838, 1166 661, 676–678, 692, 693, 700, 702, 929, buchneri (Lactobacillus), 471, 473, 475, 476, Caloramator viterbiensis, 738, 834, 836, 838 930, 1100 481, 494, 504 Caloranaerobacter, 6, 7, 737, 839, 840 bowmanii (Clostridium), 761, 773, 777, 786, budayi (Bacterium), 876 Caloranaerobacter azorensis, 839, 840, 850, 805 budayi (Eubacterium), 6, 757, 770, 801, 810, 901, 903, 1144, 1145 brachy (Eubacterium), 876, 1154, 1157, 1158 869, 876, 883 camelliae (Enterococcus), 600, 602 brasilensis (Paenibacillus), 282 bulgaricum (Thermobacterium), 490 Caminicella, 6, 737, 840, 1153 Brevibacillus, 4, 24, 49, 61, 121, 269, 298–301, bulgaricus (Lactobacillus), 490 Caminicella sporogenes, 763, 780, 840 305, 387, 1161 Bulleidia, 12, 1299, 1307, 1311, 1312 caminithermale (Clostridium), 762, 780, 840 Brevibacillus agri, 308, 312, 313 Bulleidia extructa, 1304, 1307, 1308, 1309 campestris (Brochothrix), 244, 252, 258, Brevibacillus borstelensis, 308, 313 Burkholderia, 1318 259, 261 Brevibacillus brevis, 121, 300, 301, 305, 307, burkinabensis (Anaerovibrio), 1069–1071 campinasensis (Paenibacillus), 271, 282 308, 310, 311, 312 burkinensis (Anaeroarcus), 1069, 1070, 1071 campisalis (Halobacillus), 168 Brevibacillus centrosporus, 308, 313 buswellii (Syntrophus), 1034 campisalis (Marinibacillus), 371, 373 Brevibacillus choshinensis, 308, 310, 312, 313 Buttiauxella agrestis, 121 Campylobacter gracilis, 1043 Brevibacillus formosus, 308, 312, 314 butyricum (Clostridium), 6, 738, 739, 758, Candidatus Arthromitus, 49 Brevibacillus ginsengisoli, 308, 311, 314 772, 798, 805, 813, 834, 843, 847, 1079, Candidatus Pasteuria usgae, 329, 330, 335, Brevibacillus invocatus, 308, 312, 314 1138, 1161 338, 340, 345 Brevibacillus laterosporus, 300, 307, 308, 310, Butyrivibrio, 8, 804, 922, 926, 927, 941, 944, 951 candidus (Thermoactinomyces), 434, 312, 314 Butyrivibrio crossotus, 927, 928, 930–932, 934, 442, 443 Brevibacillus levickii, 307, 308, 311, 315 936, 951 cangingivalis (Porphyromonas), 641 Brevibacillus limnophilus, 312, 315 Butyrivibrio fibrisolvens, 804, 885, 886, canintestini (Enterococcus), 596, 602 Brevibacillus parabrevis, 308, 312, 315 927–932, 934, 936, 937, 953, 955, 962 canis (Enterococcus), 596, 597, 602 Brevibacillus reuszeri, 308, 312, 316 Butyrivibrio hungatei, 804, 927, 930, 934, canis (Mycoplasma), 962 Brevibacillus thermoruber, 152, 300, 307, 308, 937, 962 canis (Streptococcus), 655, 662, 687 310, 312, 316 capillosus (Bacteroides), 795 Brevibacterium, 462 caballi (Streptococcus), 711 capitis (Staphylococcus), 392, 393, Brevibacterium acetylicum, 462, 571 caccae (Anaerostipes), 924, 925 397–399, 402 Brevibacterium albidum, 571 caccae (Enterococcus), 600, 602 capitis subsp. capitis (Staphylococcus), Brevibacterium ammoniagenes, 571 cadaveris (Clostridium), 762, 813 402, 403 Brevibacterium citreum, 571 Caldalkalibacillus, 20, 71 capitis subsp. urealyticus (Staphylococcus), Brevibacterium divaricatum, 571 Caldanaerobacter, 1241, 1282 402 Brevibacterium fermentans, 571 Caldanaerobacter subterraneus, 1232, caprae (Staphylococcus), 392, 396, 398, Brevibacterium imperiale, 571 1241, 1258 403, 406 Brevibacterium incertum, 568, 571, 572 Caldanaerobacter subterraneus subsp. caprinus (Streptococcus), 678, 693 Brevibacterium linens, 571 pacificus, 1242, 1243, 1245 carbinolicum (Acetobacterium), Brevibacterium luteum, 571 Caldanaerobacter subterraneus subsp. 891–893, 894 Brevibacterium lyticum, 571 subterraneus, 1242, 1243 carboniphilus (Bacillus), 4, 33, 48, 53, 78, 95 Brevibacterium mcbrellneri, 571 Caldanaerobacter subterraneus subsp. carboxidivorans (Clostridium), 763, 773, Brevibacterium oxydans, 571 tengcongensis, 1232, 1242, 1244 811, 826 Brevibacterium protophormiae, 571 Caldanaerobacter subterraneus subsp. Carboxydibrachium, 11, 1242 Brevibacterium pusillum, 571 yonseiensis, 1232, 1242, 1244 Carboxydibrachium pacificum, 1261 Brevibacterium saperdae, 571 Caldanaerobius, 1282, 1285, 1287 carboxydiphila (Thermincola), 1001, 1245 Brevibacterium testaceum, 571 Caldanaerobius fijiensis, 1282 carboxydivorans (Desulfotomaculum), 994 Brevibacterium vitarumen, 571 Caldanaerobius polysaccharolyticus, 1283, 1285 carboxydivorans (Thermosinus), 1118, 1245 brevis (Bacillus), 69, 70, 298–300, 305, 308, Caldanaerobius zeae, 1283, 1287 Carboxydocella, 11, 1044, 1180 310–312, 315 Caldicellulosiruptor, 10, 11, 1044, 1275, 1282 Carboxydocella sporoproducens, 1180, 1181 brevis (Brevibacillus), 121, 300, 301, 305, 307, Caldicellulosiruptor acetigenus, 1 Carboxydocella thermautotrophica, 1180, 1245 308, 310, 311, 312 275–1277, 1278 Carboxydothermus, 11, 979, 1225, 1244, 1249 brevis (Lactobacillus), 467, 471, 473–477, Caldicellulosiruptor kristjanssonii, Carboxydothermus ferrireducens, 1244, 479, 494 1275–1277, 1288 1245, 1246, 1253, 1256 Brochothrix, 4, 244, 252, 257 Caldicellulosiruptor lactoaceticus, Carboxydothermus hydrogenoformans, 979, Brochothrix campestris, 244, 252, 258, 259, 261 1275–1277, 1278 1244, 1245 Brochothrix thermosphacta, 244, 257–259, Caldicellulosiruptor owensensis, carmonensis (Virgibacillus), 183, 194–196, 260, 261, 1303 1275–1277, 1279 200, 201 1430 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA carnis (Clostridium), 763, 767, 776, 777, 785, cellulosilytica (Halocella), 1195, 1201, CLOSTRIDIACEAE, 6–8, 10, 736, 738, 771, 811, 814, 821 1202, 1204 829, 830, 832, 836, 837, 839–843, 847, carnis (Lactobacillus), 552, 556 cellulosilyticus (Bacillus), 124 851, 910, 912, 1019, 1029, 1032, 1034, CARNOBACTERIACEAE, 6, 464, 537, 549 cellulosilyticus (Paenibacillus), 282 1036, 1050 Carnobacterium alterfunditum, 549, 550, cellulosolvens (Acetivibrio), 1021 CLOSTRIDIALES, 4, 6, 8–12, 736, 737, 832, 552–554, 555, 582 cellulosolvens (Eubacterium), 8, 868, 877 836, 837, 839, 841, 843, 847, 850, 851, Carnobacterium divergens, 549, 550, cellulovorans (Clostridium), 766 893, 894, 897, 899–901, 903, 905, 910, 552–554, 555 Centipeda, 11, 1059, 1075, 1077, 1105, 1109 912, 921, 925, 927, 937, 942, 944–946, Carnobacterium funditum, 549, 550, Centipeda periodontii, 1077, 1078 952, 954, 961, 962, 969, 974, 982, 990, 552–554, 556, 582 centrosporus (Bacillus), 70, 300, 312, 313 1000, 1001, 1008, 1009, 1012, 1029, 1032, Carnobacterium gallinarum, 550, 552, 554, centrosporus (Brevibacillus), 308, 313 1034, 1049, 1053, 1058, 1091, 1102, 1139, 555, 556, 569 Cerasibacillus, 4, 71, 141, 181, 183 1144, 1145, 1161, 1167, 1169, 1171, 1172, Carnobacterium inhibens, 549, 552–554, 556 Cerasibacillus quisquiliarum, 141, 142 1174–1176, 1185, 1203, 1282, 1289, 1296, Carnobacterium maltaromaticum, 552, 554, cereus (Bacillus), 21, 26, 27, 29–31, 33–42, 1297, 1299, 1312 555, 556 44–50, 52, 53, 60, 64–70, 78, 92, 95, 110, clostridiiforme (Bacterium), 767 Carnobacterium mobile, 549, 550, 552, 554, 113, 119–121, 153, 278, 299, 310 clostridioforme (Clostridium), 759, 767, 949 556, 569 cerevisiae (Megasphaera), 1071, 1072, Clostridium, 6, 8, 68, 738, 763, 775, 781, 851, Carnobacterium piscicola, 551–553, 555, 556, 1083–1089 866, 912, 1024, 1040, 1144, 1152, 1166, 569, 617 cerevisiiphilus (Pectinatus), 1094–1098, 1275, 1277, 1304 Carnobacterium pleistocenium, 549, 550, 1099, 1119 Clostridium absonum, 6, 810, 869 552–555, 557 chagannorensis (Bacillus), 124 Clostridium aceticum, 741, 747, 775, 776, Carnobacterium viridans, 549–553, 557 chartatabidum (Clostridium), 756, 766, 827 895, 1249 carnosum (Leuconostoc), 624, 625, chauvoei (Bacterium), 767 Clostridium acetireducens, 6, 747, 749, 1138, 627–630, 632 chauvoei (Clostridium), 764, 767, 774, 776, 1166, 1169 carnosus (Staphylococcus), 397, 399, 403, 418 802, 811, 813, 814, 821, 831 Clostridium acetobutylicum, 6, 182, 737, 749, carnosus subsp. carnosus (Staphylococcus), chibensis (Paenibacillus), 283 771, 808, 1282 403, 405 chinense (Planomicrobium), 374, 375, 383 Clostridium acidisoli, 6, 750, 752, 798 carnosus subsp. utilis (Staphylococcus), 403 chinjuensis (Paenibacillus), 271, 283 Clostridium aciditolerans, 750, 789, 790, carouselicus (Macrococcus), 423, 424, 425 chironomi (Oceanobacillus), 177, 183 793, 826 CARYOPHANACEAE, 3–5 chitinivorans (Halanaerobacter), 1207, 1208, Clostridium acidurici, 750, 806, 839, 850, 1144 Caryophanon, 3, 4, 348, 354 1212, 1213, 1214 Clostridium aerotolerans, 8, 751, 753, 755, Caryophanon latum, 356, 357, 359 chitinolyticus (Bacillus), 4, 49, 283 765, 809, 815, 828, 990 Caryophanon tenue, 356–358, 359 chitinolyticus (Paenibacillus), 283, 286 Clostridium aestuarii, 751, 777, 779 casei (Lactobacillus), 470, 472–474, 476, 477, CHLAMYDIAE, 1172 Clostridium akagii, 6, 750, 752, 798 481, 494, 504, 507, 511, 516 Chlorobium, 916 Clostridium aldenense, 752, 767 casei subsp. pseudoplantarum Chloroflexus, 916 Clostridium aldrichii, 10, 752, 754, 819, 824 (Lactobacillus), 486, 504 chlororespirans (Desulfitobacterium), 975, Clostridium algidicarnis, 6, 753, 806 casei subsp. rhamnosus (Lactobacillus), 507 976, 978, 980 Clostridium algidixylanolyticum, 751, 753 casei subsp. tolerans (Lactobacillus), 504 chlorum (Heliobacterium), 914, 916, 917 Clostridium alkalicellulosi, 10, 753, 819, 824 caseolyticus (Macrococcus), 400, 423, 424, 425 chondroitinus (Bacillus), 70, 283 Clostridium aminophilum, 754, 931, caseolyticus (Staphylococcus), 400, 425 chondroitinus (Paenibacillus), 269, 278, 283 1166, 1169 casseliflavus (Enterococcus), 594–597, 600, choshinensis (Bacillus), 70, 300, 312, 313 Clostridium aminovalericum, 754, 765, 828 601, 603, 617 choshinensis (Brevibacillus), 308, 310, Clostridium amygdalinum, 751, 753, 754, 785, castoreus (Streptococcus), 711 312, 313 791, 809 Catellicoccus, 6, 512 christensenii (Aerococcus), 533, 534, Clostridium arcticum, 755 catenaformis (Lactobacillus), 12, 1299, 1309 535, 1134 Clostridium argentinense, 6, 755, 761, 812 Catenibacterium, 12, 1299, 1307, 1309 chromogena (Thermomonospora), 439 Clostridium asparagiforme, 752, 755, 756, Catenibacterium mitsuokai, 1309 chromogenes (Staphylococcus), 397, 399, 759, 767, 768, 949 cateniformis (Coprobacillus), 1310 404, 410 Clostridium aurantibutyricum, 6, 756, 775, 827 Catonella, 921, 926, 932, 937, 944, 946 chungwhensis (Pontibacillus), 189, 190, 216 Clostridium baratii, 6, 756, 757, 770, 801, 810 Catonella morbi, 937–939, 940, 945, 952 cibaria (Weissella), 630, 643, 645, 646, 647 Clostridium barkeri, 875, 904, 1299 catus (Coprococcus), 940 cibi (Bacillus), 124, 125 Clostridium bartlettii, 10, 757, 779, 784, caviae (Veillonella), 1064 cineris (Paenibacillus), 271, 283 789, 791 cecicola (Roseburia), 868, 934, 954, 955 cinnamivorans (Papillibacter), 1032, Clostridium beijerinckii, 6, 741, 756, 757, 762, cecorum (Enterococcus), 596, 597, 600, 603 1033, 1034 767, 772, 805, 809, 810, 827 cecorum (Streptococcus), 603 circulans (Bacillus), 27, 29, 31, 32, 38, 40, 42, Clostridium bifermentans, 46, 758, 772, 776, celatum (Clostridium), 764, 773, 785, 807 46, 48–50, 53, 62, 65, 68–71, 96, 99, 107, 789, 794, 813, 814 celer (Caloramator), 738, 740, 834, 836, 108, 271, 280, 283, 287, 289, 291, 294 Clostridium bolteae, 752, 756, 758, 767, 768, 837, 848 citreum (Brevibacterium), 571 820, 949 celere (Thermobrachium), 736, 738, 834, citreum (Leuconostoc), 627–630, 632 Clostridium botulinum, 6, 715, 755, 759, 836, 837, 848 citreus (Planococcus), 348–350, 353, 361, 367 764, 780, 794, 795, 799, 816, 817, 827, celerecrescens (Clostridium), 753–755, 764, citroniae (Clostridium), 752, 759, 767, 768 878, 914 765, 780, 783, 809, 815 clarkii (Bacillus), 24, 33, 53, 78, 96 Clostridium bowmanii, 6, 761, 773, 777, cellicola (Pediococcus), 513, 514, 516, 518 clausii (Bacillus), 24, 33, 46, 53, 97 786, 805 cellobioparum (Clostridium), 10, 765, 782, claussenii (Pediococcus), 513, 514, 516, 518, Clostridium bryantii, 1052, 1053 785, 796, 821 520, 613 Clostridium butyricum, 6, 738, 739, 758, cellobiosus (Lactobacillus), 497 CLOSTRIDIA, 1, 2, 4, 6, 7, 9, 10, 12, 16, 19, 772, 798, 805, 813, 834, 843, 847, 1079, cellulofermentans (Clostridium), 765 736, 829, 832, 836, 837, 839, 841, 843, 1138, 1161 cellulolyticum (Clostridium), 10, 765, 782, 847, 851, 893, 897, 900, 905, 921, 925, Clostridium cadaveris, 762, 813 785, 796, 821 927, 932, 937, 942, 944–946, 954, 974, Clostridium caminithermale, 762, 780, 840 cellulolyticus (Acetivibrio), 753, 754, 809, 1000, 1008, 1012, 1026, 1032, 1034, 1049, Clostridium carboxidivorans, 763, 773, 819, 824, 1020, 1021 1053, 1071, 1072, 1091, 1094, 1098,1102, 811, 826 Cellulomonas, 571 1118, 1154, 1156, 1161, 1171, 1172, 1177, Clostridium carnis, 6, 763, 767, 776, 777, 785, cellulosi (Clostridium), 766, 836 1189, 1249, 1269, 1272, 1299, 1312 811, 814, 821 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1431

Clostridium celatum, 764, 773, 785, 807 Clostridium irregulare, 767, 772, 779, 782, Clostridium rectum, 807 Clostridium celerecrescens, 753–755, 764, 784, 789–791 Clostridium roseum, 6, 775, 808 780, 783, 809, 815 Clostridium isatidis, 764, 784, 811, 821 Clostridium saccharobutylicum, 6, 741, 758, Clostridium cellobioparum, 10, 765, 782, 785, Clostridium jejuense, 754, 785, 802, 803, 828 772, 801, 805, 808, 810, 827 796, 821 Clostridium josui, 10, 765, 766, 782, 785, Clostridium saccharogumia, 770, 809, 816 Clostridium cellulofermentans, 765 796, 821 Clostridium saccharolyticum, 751, 753, 755, Clostridium cellulolyticum, 10, 765, 782, 785, Clostridium kluyveri, 6, 785, 786, 789 765, 780, 783, 791, 809, 815 796, 821 Clostridium lactatifermentans, 770, 786, Clostridium saccharoperbutylacetonicum, 6, Clostridium cellulosi, 766, 836 792, 804 741, 758, 767, 805, 809, 827 Clostridium cellulovorans, 6, 766 Clostridium lacusfryxellense, 6, 762, 773, 777, Clostridium sardiniense, 6, 750, 771, 810 Clostridium chartatabidum, 6, 756, 766, 827 786, 805 Clostridium sartagoforme, 6, 766, 784, 785, Clostridium chauvoei, 6, 764, 767, 774, 776, Clostridium laramiense, 774 810, 821 802, 811, 813, 814, 821, 831 Clostridium lentocellum, 787 Clostridium scatologenes, 6, 763, 773, 789, Clostridium citroniae, 752, 759, 767, 768 Clostridium lentoputrescens, 769 790, 793, 811 Clostridium clostridioforme, 759, 767, 949 Clostridium leptum, 10, 787, 817, 869, 1019, Clostridium schirmacherense, 755, 812 Clostridium coccoides, 768, 925, 926, 942, 1024, 1026, 1037–1039 Clostridium scindens, 783, 812, 1034 944, 949, 951 Clostridium limosum, 6, 782, 787, 804 Clostridium septicum, 6, 762, 764, 767, 774, Clostridium cochlearium, 6, 769, 820, 822 Clostridium litorale, 788, 819, 869, 1150, 1169 776, 785, 812, 821 Clostridium cocleatum, 769, 809, 816, 1299 Clostridium lituseburense, 757, 772, 784, 788, Clostridium sordellii, 757, 758, 772, 778, 781, Clostridium colicanis, 6, 770 789, 791 789, 790, 814, 819, 869 Clostridium colinum, 770 Clostridium ljungdahlii, 737, 786, 789, 1249 Clostridium sphenoides, 765, 780, 783, 791, Clostridium collagenovorans, 6, 750, 770 Clostridium lortetii, 1222 814, 990 Clostridium cylindrosporum, 6, 771, 806, 836 Clostridium lundense, 6, 771, 789, 790, 823 Clostridium spiroforme, 770, 772, 801, 807, Clostridium difficile, 771, 772, 790, 814, Clostridium magnum, 789 809, 815, 1299, 1310 817, 821 Clostridium malenominatum, 790 Clostridium sporogenes, 6, 40, 759, 760, 772, Clostridium diolis, 6, 741, 758, 762, 767, 770, Clostridium mangenotii, 772, 790 795, 813, 816, 866, 972, 973, 1150 772, 805, 809, 810, 827 Clostridium mayombei, 757, 779, 784, 789, 791 Clostridium sporosphaeroides, 787, 817 Clostridium disporicum, 6, 764, 772, 807 Clostridium methoxybenzovorans, 765, 783, Clostridium stercorarium, 10, 817, 836, Clostridium drakei, 750, 763, 773, 789, 790, 791, 815 1275, 1277 793, 811 Clostridium methylpentosum, 10, 791 Clostridium stercorarium subsp. Clostridium durum, 285 Clostridium neopropionicum, 786, 791, 804 leptospartum, 818 Clostridium estertheticum, 6, 762, 773, Clostridium nexile, 792 Clostridium stercorarium subsp. 786, 805 Clostridium nitrophenolicum, 790, 792 stercorarium, 818 Clostridium estertheticum subsp. Clostridium novyi, 6, 759, 761, 780, 793, 795, Clostridium stercorarium subsp. estertheticum, 762, 773, 777 813, 817 thermolacticum, 818 Clostridium estertheticum subsp. laramiense, Clostridium oceanicum, 794 Clostridium sticklandii, 818, 931, 1166, 1169 762, 773, 774, 777 Clostridium orbiscindens, 10, 795, 869, Clostridium straminisolvens, 10, 12, 753, 754, Clostridium fallax, 6, 774, 784, 802, 831 1032, 1034 819, 824 Clostridium felsineum, 6, 774–776, 808, 832, Clostridium oroticum, 779, 792, 795, 868 Clostridium subterminale, 6, 759, 761, 762, 834, 841, 842, 852 Clostridium oxalicum, 320 812, 819, 826, 878, 1166, 1169 Clostridium fimetarium, 775 Clostridium papyrosolvens, 10, 765, 766, 782, Clostridium symbiosum, 820, 1068 Clostridium formicaceticum, 6, 747, 775, 785, 795, 821 Clostridium tepidiprofundi, 820 776, 1249 Clostridium paradoxum, 796, 823, 1056 Clostridium termitidis, 10, 765, 766, 782, 785, Clostridium frigidicarnis, 6, 776 Clostridium paraperfringens, 756 796, 820, 1036 Clostridium frigoris, 6, 776, 786, 805 Clostridium paraputrificum, 6, 756, 766, 796, Clostridium tertium, 6, 764, 766, 767, 776, Clostridium ganghwense, 752, 777, 779 797, 827 777, 785, 794, 811, 813, 814, 821 Clostridium gasigenes, 6, 777 Clostridium pascui, 6, 749, 789, 790, 797, 798, Clostridium tetani, 6, 714, 769, 813, 821 Clostridium ghonii, 756, 772, 777, 790, 814, 820, 910, 1166, 1169 Clostridium tetanomorphum, 6, 749, 789, 819, 869 Clostridium pasteurianum, 6, 740, 750, 790, 822 Clostridium glycolicum, 757, 778, 784, 791 752, 797 Clostridium thermoalcaliphilum, 796, 823 Clostridium glycyrrhizinilyticum, 779, 792, 795 Clostridium peptidivorans, 6, 789, 790, 797, Clostridium thermobutyricum, 6, 737, 780, Clostridium grantii, 6, 779 798, 820 782, 823, 825 Clostridium haemolyticum, 6, 779 Clostridium perenne, 756 Clostridium thermocellum, 10, 737, 753, 754, Clostridium halophilum, 6, 763, 780, 840, Clostridium perfringens, 6, 44, 759–761, 794, 766, 819, 824, 836, 1202, 1229, 1231, 850, 852, 903, 1150, 1153, 1192, 1193 799, 810, 813, 815 1238, 1249, 1275, 1277, 1281, 1282 Clostridium hastiforme, 11, 850, 1137–1139, Clostridium pfennigii, 843 Clostridium thermocopriae, 1237, 1275, 1277 1142, 1144, 1146, 1147 Clostridium phytofermentans, 801 Clostridium thermohydrosulfuricum, 1238 Clostridium hathewayi, 780 Clostridium piliforme, 770 Clostridium thermolacticum, 818, 836, 1249 Clostridium herbivorans, 780, 803 Clostridium polysaccharolyticum, 781, 802, 924 Clostridium thermopalmarium, 6, 780, 782, Clostridium hiranonis, 781 Clostridium populeti, 754, 781, 785, 803 824, 836 Clostridium histolyticum, 6, 781, 788, Clostridium propionicum, 782, 786, 792, 803 Clostridium thermopapyrolyticum, 825 804, 1166 Clostridium proteoclasticum, 804, 934, 962 Clostridium thermosaccharolyticum, 736, Clostridium homopropionicum, 6, 777, 779, Clostridium proteolyticum, 6, 782, 788, 804 1231, 1280, 1285 780, 782 Clostridium psychrophilum, 786, 804 Clostridium thermosuccinogenes, 10, Clostridium hungatei, 10, 765, 766, 782, 785, Clostridium puniceum, 6, 741, 758, 767, 772, 825, 910 796, 821 775, 805, 806, 809, 810 Clostridium thiosulfatireducens, 6, 820, 825 Clostridium hydroxybenzoicum, 1137, Clostridium purinilyticum, 805, 839, 850, Clostridium tyrobutyricum, 6, 786, 789, 1141, 1169 867, 1144 826, 1161 Clostridium hylemonae, 782, 812 Clostridium putrefaciens, 6, 753, 802, 806, 831 Clostridium uliginosum, 6, 760, 826 Clostridium indolis, 755, 765, 780, 783, 791, Clostridium putrificum, 6, 797 Clostridium ultunense, 827, 850, 1143–1145, 809, 815 Clostridium quercicolum, 1079, 1094 1166, 1254, 1256 Clostridium innocuum, 661, 710, 783, 784, Clostridium quinii, 6, 764, 773, 806, 807, 811 Clostridium villosum, 1009, 1012 869, 1299 Clostridium ramosum, 770, 807, 809, 816, Clostridium vincentii, 6, 777, 797, 827 Clostridium intestinale, 6, 784, 802, 831, 1115 1299, 1310 Clostridium viride, 10, 827 1432 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA

Clostridium xylanolyticum, 751, 753, 754, Coprothermobacter proteolyticus, 1271, delbrueckii subsp. bulgaricus (Lactobacillus), 765, 828, 990 1272, 1274 469, 473, 475–479, 490 Clostridium xylanovorans, 785, 828 CORYNEBACTERIACEAE, 1304 delbrueckii subsp. delbrueckii coagulans (Bacillus), 26, 33, 34, 38, 46, 48–50, Corynebacterium, 570, 571 (Lactobacillus), 475, 479, 490 53, 58, 65, 66, 97 Corynebacterium flavescens, 260 delbrueckii subsp. indicus (Lactobacillus), 491 coccoides (Clostridium), 768, 925, 926, 942, coryniformis (Lactobacillus), 469, 470, delbrueckii subsp. lactis (Lactobacillus), 944, 949, 951 473–475, 479, 495 471–474, 476, 490 cochlearium (Clostridium), 769, 820, 822 coryniformis subsp. coryniformis delphini (Staphylococcus), 393, 399, 405, 412 cocleatum (Clostridium), 769, 809, 816, 1299 (Lactobacillus), 495 DELTAPROTEOBACTERIA, 959 Cohnella, 4, 269, 316 coryniformis subsp. torquens dendritiformis (Paenibacillus), 29, 271, Cohnella hongkongensis, 317, 319, 320 (Lactobacillus), 495 272, 284 Cohnella thermotolerans, 317, 319 creatinini (Tissierella), 1142, 1143, 1147 Dendrosporobacter, 11, 1059, 1066, 1079, 1103 cohnii (Bacillus), 26, 33, 48, 53, 78, 97 creatinophila (Tissierella), 850, 1142, 1147 Dendrosporobacter quercicolus, cohnii (Staphylococcus), 393, 397, 398, cremoris (Leuconostoc), 630, 631 1079–1080, 1103 404, 406 cremoris (Streptococcus), 630, 720 denitrificans (Jonesia), 253, 260 cohnii subsp. cohnii (Staphylococcus), 404 criceti (Streptococcus), 661, 662, 663, denitrificans (Listeria), 253 cohnii subsp. urealyticus (Staphylococcus), 681, 688 Denitrobacterium, 148 398, 404, 405 criceti (Veillonella), 1059, 1062, 1063, 1064 dentalis (Mitsuokella), 1093 coleocola (Eremococcus), 539, 540, 541, 545 crispatus (Lactobacillus), 470, 477–479, 491, dentalis (Prevotella), 1093, 1129 coleohominis (Lactobacillus), 478, 494, 512 495, 498 denticariosi (Veillonella), 1062, 1063, 1064 coli (Escherichia), 36, 37, 178, 187, 261, 269, cristatus (Streptococcus), 661, 676, 677, 688 dentirousetti (Streptococcus), 711 330, 373, 561, 568, 612, 914, 916, 929, crossotus (Butyrivibrio), 927, 928, 930–932, Desemzia, 6, 512, 549, 555, 564, 568, 587 930, 972, 1036, 1056, 1100, 1162, 1189, 934, 936, 951 Desemzia incerta, 565, 568–571, 572, 579, 1204, 1205, 1212, 1229, 1230, 1248, 1280, crotonatoxidans (Alkaliphilus), 737, 829, 837 582, 587 1282, 1297 Cryptanaerobacter, 9, 969, 971, 996 desmolans (Eubacterium), 869, 873, 879 colicanis (Clostridium), 770 Cryptanaerobacter phenolicus, 972, 973, Desulfacinum, 1271 colihominis (Anaerotruncus), 1019, 1024 974, 996 Desulfacinum hydrothermale, 1271 colinum (Clostridium), 770 Cryptobacterium, 867 Desulfacinum infernum, 1271 collagenovorans (Clostridium), 750, 770 cuniculi (Gemella), 456, 457, 458 Desulfitobacterium, 9, 913, 969, 974, 975, collinoides (Lactobacillus), 473, 475, 494, curdlanolyticus (Bacillus), 70, 284 983, 984, 986, 987 495, 504, 505 curdlanolyticus (Paenibacillus), 271, 278, Desulfitobacterium chlororespirans, 975, 976, Collinsella aerofaciens, 942 284, 290 978, 980 collinsii (Trichococcus), 585, 586, 587 Curtobacterium, 571 Desulfitobacterium dehalogenans, 914, 975, colombiense (Aminobacterium), 1165, 1166, Curtobacterium pusillum, 231, 243, 1182 980, 986, 1000 1167, 1178 curvata (Syntrophomonas), 1046, 1048, 1050 Desulfitobacterium frappieri, 979 columbae (Enterococcus), 596, 597, 600, 603 curvatum (Bacterium), 495 Desulfitobacterium hafniense, 975–980, columbae (Planococcus), 350, 353 curvatus (Lactobacillus), 474–476, 479, 480, 981, 986 combesii (Eubacterium), 877, 867 495, 508, 630 Desulfitobacterium metallireducens, 975, comes (Coprococcus), 779, 792, 941 CYANOBACTERIA, 330, 1172 978, 981 commune (Thermodesulfobacterium), 1240 cycloheptanicus (Alicyclobacillus), 152, 230, Desulfobacter, 1269 composti (Lactobacillus), 523 231, 235, 238, 239, 330 Desulfococcus, 986 concavus (Lactobacillus), 514 cycloheptanicus (Bacillus), 70, 152, 229, 239 Desulfomicrobium, 985 condimenti (Staphylococcus), 399, 405 cyclohexanicum (Propionibacterium), 231, Desulfomonas, 946 confusa (Weissella), 629, 630, 643, 645, 243, 1182, 1187 Desulfomonile, 990 646, 647 cylindroides (Bacterium), 878 Desulfonispora, 9, 969, 982 confusus (Lactobacillus), 479, 629, 643, 647 cylindroides (Eubacterium), 661, 710, 869, Desulfonispora thiosulfatigenes, 982 congolense (Halanaerobium), 1195, 1197, 876, 878, 1299 Desulfosporosinus, 9, 969, 978, 982, 983 1199 cylindrosporum (Clostridium), 771, 806, 836 Desulfosporosinus auripigmenti, 983, 984, constellatus (Streptococcus), 663, 686, cypricasei (Lactobacillus), 476, 482, 496, 512 985–987 687, 707 Cytophaga johnsonae, 361 Desulfosporosinus meridiei, 983, 987, 988 constellatus subsp. constellatus Desulfosporosinus orientis, 983, 990 (Streptococcus), 663, 687 dabanensis (Halobacillus), 168 Desulfotomaculum, 9, 932, 969, 972, 973, 978, constellatus subsp. pharyngis (Streptococcus), daejeonensis (Paenibacillus), 271, 284, 286 982, 983, 985–987, 989, 990, 996, 997, 663, 687 damnosus (Pediococcus), 513, 514, 516, 517, 999, 1249, 1254, 1269 contaminans (Alicyclobacillus), 230, 231, 237, 518, 519, 611, 613 Desulfotomaculum acetoxidans, 986, 990 238, 239 danicus (Aneurinibacillus), 299, 301, 308, 312 Desulfotomaculum aeronauticum, 991 contaminans (Anoxybacillus), 134–136, 139 daurensis (Heliorestis), 914, 919 Desulfotomaculum alkaliphilum, 990, 991 contortum (Eubacterium), 779, 792, 796, debilis (Geobacillus), 144, 146, 147, 153, 155 Desulfotomaculum antarcticum, 991, 994 868, 878 decisifrondis (Bacillus), 124 Desulfotomaculum arcticum, 994, 999 convoluta (Heliorestis), 914, 919 decolorationis (Bacillus), 48, 53, 98 Desulfotomaculum auripigmentum, 983, cookii (Paenibacillus), 27, 271, 284 defectiva (Abiotrophia), 535, 536, 537, 539, 986, 987 coolhaasii (Caloramator), 834, 836, 837 542, 545, 560, 563, 564, 567, 574, 575, 661 Desulfotomaculum australicum, 994 Coprobacillus, 6, 12, 1299, 1307, 1310 defectivus (Streptococcus), 575 Desulfotomaculum carboxydivorans, 994 Coprobacillus cateniformis, 1310 Deferribacter, 1172 Desulfotomaculum geothermicum, 990, Coprococcus, 8, 921, 926, 932, 937, 939, 940, DEFERRIBACTERES, 1172 994, 999 941, 944, 959, 1016, 1029 degensii (Ammonifex), 1240, 1241, 1258 Desulfotomaculum gibsoniae, 994, 999 Coprococcus catus, 940 Dehalobacter, 9, 969, 974, 978 Desulfotomaculum guttoideum, 9, 791, Coprococcus comes, 779, 792, 941 Dehalobacter restrictus, 974, 977 815, 990 Coprococcus eutactus, 940 dehalogenans (Desulfitobacterium), 914, 975, Desulfotomaculum halophilum, 990, 994 coprostanoligenes (Eubacterium), 867, 878 980, 986, 1000 Desulfotomaculum kuznetsovii, 994 Coprothermobacter, 11, 1268, 1271, 1273 delbrueckii (Lactobacillus), 465, 469, Desulfotomaculum luciae, 994 Coprothermobacter platensis, 1271, 471–477, 479–481, 483, 490, 491–493, Desulfotomaculum nigrificans, 986, 989, 1272, 1273 495, 497–502, 506, 510 990, 1057 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1433

Desulfotomaculum orientis, 983, 987, 1000 dokdonensis (Virgibacillus), 183, 194, 195, Enterococcus gallinarum, 594, 596, 597, 600, Desulfotomaculum putei, 994 200, 201 601, 604, 617 Desulfotomaculum reducens, 996 dolichum (Eubacterium), 784, 869, 871, Enterococcus gilvus, 596, 600, 604 Desulfotomaculum ruminis, 986, 995 879, 1299 Enterococcus haemoperoxidus, 604 Desulfotomaculum sapomandens, 995, 999 Dolosicoccus, 5, 538, 539, 541, 576, 1134 Enterococcus hermanniensis, 596, 597, 605 Desulfotomaculum solfataricum, 995 Dolosicoccus paucivorans, 539, 540, 545 Enterococcus hirae, 594, 596, 597, 601, 605 Desulfotomaculum thermoacetoxidans, 986, Dolosigranulum, 6, 512, 557, 566, 567, Enterococcus italicus, 600, 605 995, 1254 573, 594 Enterococcus malodoratus, 594, 600, 605 Desulfotomaculum thermobenzoicum, Dolosigranulum pigrum, 539, 543, 547, 560, Enterococcus moraviensis, 600, 605 986, 995 562, 566, 568, 572, 573, 574, 583 Enterococcus mundtii, 594, 596, 597, 605 Desulfotomaculum thermobenzoicum subsp. Dorea, 6, 8, 812, 921, 926, 932, 941 Enterococcus pallens, 596, 605 thermobenzoicum, 995 Dorea formicigenerans, 812, 837, 941, Enterococcus phoeniculicola, 596, 606 Desulfotomaculum thermobenzoicum subsp. 942, 943 Enterococcus porcinus, 600, 607 thermosyntrophicum, 995 Dorea longicatena, 812, 837, 941–943, 947 Enterococcus pseudoavium, 594, 600, 606 Desulfotomaculum thermocisternum, 995 downei (Streptococcus), 662, 663, 689 Enterococcus raffinosus, 594, 596, 600, 606 Desulfotomaculum thermosapovorans, drakei (Clostridium), 750, 763, 773, 789, 790, Enterococcus ratti, 597, 606 995, 999 793, 811 Enterococcus saccharolyticus, 606 Desulfotomaculum thermosubterraneum, 996 drentensis (Bacillus), 53, 98 Enterococcus saccharominimus, 600 Desulfovibrio, 883, 983, 985, 986, 1045, 1049, durans (Enterococcus), 594–597, 601, 604 Enterococcus seriolicida, 600, 715 1050, 1053, 1151, 1271 durans (Streptococcus), 604 Enterococcus silesiacus, 600, 606 Desulfovibrio orientis, 983, 987, 995 durianis (Lactobacillus), 482, 496 Enterococcus solitarius, 600, 611, 612, 616 Desulfovibrio vulgaris, 873, 1034 durionis (Leuconostoc), 633 Enterococcus sulfureus, 597, 607 Dethiosulfovibrio, 10, 11, 1044, 1171, 1172, durum (Clostridium), 285 Enterococcus termitis, 600, 607 1174, 1175, 1177 durus (Paenibacillus), 273, 279, 285, 292 Enterococcus villorum, 597, 600, 607 Dethiosulfovibrio acidaminovorans, 1171, dysgalactiae (Streptococcus), 662, 689 epidermidis (Staphylococcus), 392, 396–400, 1172, 1176 dysgalactiae subsp. dysgalactiae 405, 410, 414, 537, 574, 578 Dethiosulfovibrio marinus, 1175, 1176 (Streptococcus), 662, 690 Epulopiscium, 49 Dethiosulfovibrio peptidovorans, 1166, 1167, dysgalactiae subsp. equisimilis equi (Lactobacillus), 496, 512 1169, 1174, 1175, 1177 (Streptococcus), 662, 690 equi (Rhodococcus), 246 Dethiosulfovibrio russensis, 1175, 1176 equi (Streptococcus), 657, 662, 691 devorans (Thalassobacillus), 193 edaphicus (Bacillus), 4, 48, 71, 122 equi subsp. equi (Streptococcus), 662, 691 devriesei (Enterococcus), 596, 597, 600, 603 Eggerthella lenta, 867 equi subsp. ruminatorum (Streptococcus), 711 devriesei (Streptococcus), 660, 663, 688 ehimensis (Bacillus), 49, 285 equi subsp. zooepidemicus (Streptococcus), dextranicum (Leuconostoc), 630, 631 ehimensis (Paenibacillus), 285 662, 691 dextrinicus (Pediococcus), 513–516, 518, 519, eichmannii (Lactobacillus), 490 equinus (Streptococcus), 677, 678, 691 611, 613 elegans (Abiotrophia), 575, 576, 578 equipercicus (Macrococcus), 422–424 dextrinosolvens (Succinivibrio), 865 elegans (Flexibacter), 361 equorum (Staphylococcus), 398, 399, 406, Dialister, 11, 946, 1059, 1063, 1069, 1072, elegans (Granulicatella), 574, 575, 578, 661 418, 419 1080, 1081, 1083 elegans (Halobacteroides), 1207, 1208, 1209 equorum subsp. equorum (Staphylococcus), Dialister invisus, 1069, 1080, 1081, 1082, 1083 elgii (Paenibacillus), 285 406, 407 Dialister micraerophilus, 1069, 1080, 1082 eligens (Eubacterium), 868, 879 equorum subsp. linens (Staphylococcus), Dialister pneumosintes, 1069, 1072, 1080, elongatum (Acetanaerobacterium), 1019, 399, 406 1081, 1082, 1083 1020, 1024 erecta (Syntrophomonas), 1046, 1048, Dialister propionicifaciens, 1063, 1069, 1080, elsdenii (Megasphaera), 1069, 1071, 1072, 1049, 1050, 1081, 1082 1083, 1084–1088, 1089, 1094, 1205 erecta subsp. erecta (Syntrophomonas), 1046, dianae (Selenomonas), 1078, 1107, 1110 endophyticus (Bacillus), 48, 49, 53, 78, 98 1048, 1050 Dichelobacter, 946 entericus (Streptococcus), 678, 684, 690 erecta subsp. sporosyntropha dichotomicum (Thermoflavimicrobium), enteritidis (Salmonella), 1063 (Syntrophomonas), 1046, 1048, 434, 449 Enterobacter, 300, 311, 717, 1068, 1098, 1156 1049, 1050 dichotomicus (Thermoactinomyces), 434, ENTEROBACTERIACEAE, 717 Eremococcus, 5, 513, 540, 576, 594 436–442, 449 ENTEROCOCCACEAE, 6, 464, 567, 594, 607, Eremococcus coleocola, 539, 540, 541, 545 Dictyoglomus, 1172 612, 617 Erysipelothrix, 12, 252, 253, 258, 260, 571, Dictyoglomus thermophilum, 1166 Enterococcus, 6, 249, 261, 480, 513–515, 555, 1298, 1299, 1307, 1311, 1312 didelphis (Streptococcus), 656, 660, 662, 689 564, 568, 575, 594, 607, 609, 611, 612, Erysipelothrix inopinata, 1299, 1300, 1302, difficile (Clostridium), 771, 772, 790, 814, 617, 629, 656, 661, 972 1304, 1305, 1311 817, 821 Enterococcus aquimarinus, 602 Erysipelothrix rhusiopathiae, 252, 1299–1304, diolis (Clostridium), 741, 758, 762, 767, 770, Enterococcus asini, 602 1305, 1309, 1310, 1312 772, 805, 809, 810, 827 Enterococcus avium, 594–597, 602 Erysipelothrix tonsillarum, 1299–1304, diolivorans (Lactobacillus), 471, 496 Enterococcus caccae, 600, 602 1306, 1311 dipsosauri (Bacillus), 70, 160, 162, 163, 196 Enterococcus camelliae, 600, 602 ERYSIPELOTRICHACEAE, 2, 3, 6, 12, 19, dipsosauri (Gracilibacillus), 132, 160, 161, Enterococcus canintestini, 596, 602 661, 710, 869, 1298, 1299, 1304, 1309, 162, 163, 166, 196 Enterococcus canis, 596, 597, 602 1310, 1312, 1314 dispar (Enterococcus), 594, 596, 603 Enterococcus casseliflavus, 594–597, 600, 601, ERYSIPELOTRICHALES, 2, 12, 1298, 1310, dispar (Veillonella), 1060, 1062, 1063, 1064 603, 617 1312, 1314 disporicum (Clostridium), 764, 772, 807 Enterococcus cecorum, 596, 597, 600, 603 Escherichia coli, 36, 37, 178, 187, 261, 269, disulfidooxidans (Alicyclobacillus), 230, 231, Enterococcus columbae, 596, 597, 600, 603 330, 373, 561, 568, 612, 914, 916, 929, 235, 237, 238, 240, 1183 Enterococcus devriesei, 596, 597, 600, 603 930, 972, 1036, 1056, 1100, 1162, 1189, disulfidooxidans (Sulfobacillus), 238, 1183 Enterococcus dispar, 594, 596, 603 1204, 1205, 1212, 1229, 1230, 1248, 1280, divaricatum (Brevibacterium), 571 Enterococcus durans, 594–597, 601, 604 1282, 1297 divergens (Carnobacterium), 549, 550, Enterococcus faecalis, 249, 250, 515, 534, estertheticum (Clostridium), 762, 773, 552–554, 555 594–600, 601, 608, 716, 930, 972 786, 805 divergens (Lactobacillus), 549, 552, 555 Enterococcus faecium, 594–597, 601, 604 estertheticum subsp. estertheticum diversum (Mogibacterium), 1157, 1158, 1159 Enterococcus flavescens, 600 (Clostridium), 762, 773, 777 1434 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA estertheticum subsp. laramiense Eubacterium tardum, 881, 1157 ferrireducens (Thermoterrabacterium), (Clostridium), 762, 773, 774, 777 Eubacterium tenue, 10, 758, 772, 778–790, 1246, 1253, 1256 ethanolgignens (Acetivibrio), 1021 814, 819, 869, 888 Ferroplasma, 1123 ethanolicus (Thermoanaerobacter), 1161, Eubacterium timidum, 1157, 1159 Ferroplasma acidiphilum, 1123 1225, 1226, 1229–1231, 1236, 1282 Eubacterium tortuosum, 784, 869, 889, 1299 FERROPLASMACEAE, 1123 Ethanoligenens, 10, 1016, 1022 Eubacterium uniforme, 868, 889 ferus (Streptococcus), 662, 663, 678, 692 Ethanoligenens harbinense, 766, 1024 Eubacterium ventriosum, 868, 886, 889 Fervidobacterium, 1273 EUBACTERIACEAE, 7, 11, 736, 865, 868, Eubacterium xylanophilum, 868, 890 fervidus (Caloramator), 834, 835, 836, 848, 893, 897, 899–901, 905, 1034, 1156 Eubacterium yurii, 869, 890 1249, 1250 EUBACTERIALES, 6 Eubacterium yurii subsp. margaretiae, 891 fessus (Vagococcus), 616, 617 Eubacterium, 6, 7, 10, 12, 661, 757, 770, 784, Eubacterium yurii subsp. schtitka, 891 fibrisolvens (Butyrivibrio), 804, 885, 886, 801, 810, 865, 892, 893, 897, 902, 904, Eubacterium yurii subsp. yurii, 890 927–932, 934, 936, 937, 953, 955, 962 932, 937, 939, 941, 943, 944, 955, 1019, EURYARCHAEOTA, 1271 Fibrobacter succinogenes, 929 1150, 1156, 1158, 1307, 1312, 1313 eutactus (Coprococcus), 940 ficulneum (Leuconostoc), 633 Eubacterium acidaminophilum, 788, 869, evestigatum (Methanohalobium), 850, 1211 Filibacter, 4, 348, 359, 365 870, 872, 1150, 1166, 1169 exigua (Slackia), 909, 1015, 1158 Filibacter limicola, 359–361, 362 Eubacterium aggregans, 865, 867, 873, Exiguobacterium, 4, 6, 365, 460, 571 Filifactor, 10, 869, 951, 1008, 1009 897, 943 Exiguobacterium acetylicum, 460–462, 463 Filifactor alocis, 1013 Eubacterium alactolyticum, 904, 905 Exiguobacterium antarcticum, 461, 462, 463 Filifactor villosus, 1009, 1012 Eubacterium angustum, 751, 839, 850, 867, Exiguobacterium aurantiacum, 186, filiformis (Alkalibacillus), 129 875, 1144 460–462, 463 filiformis (Holdemania), 1304, 1309, Eubacterium barkeri, 865, 867, 875, 897, Exiguobacterium undae, 461, 462, 463 1310–1312 904, 943 extructa (Bulleidia), 1304, 1307, 1308, 1309 Filobacillus, 4, 71, 129, 142, 166, 176, 181, Eubacterium biforme, 12, 661, 710, 869, 183, 189, 191, 192 875, 1299 Facklamia, 5, 513, 539, 541, 544–547, 562, Filobacillus milosensis, 142, 144, 167 Eubacterium brachy, 876, 1154, 1157, 1158 573, 576, 594, 684 fimetarium (Acetobacterium), 891–893, 894 Eubacterium budayi, 6, 757, 770, 801, 810, Facklamia hominis, 541, 542–544, 546 fimetarium (Clostridium), 775 869, 876, 883 Facklamia ignava, 541, 542, 544 fimeticola (Planifilum), 434, 446, 447 Eubacterium callanderi, 865, 867, 876, 897, Facklamia languida, 541, 542, 544, 546 Finegoldia, 11, 969, 971, 1008, 1029, 1131, 1133 904, 943 Facklamia miroungae, 542, 544, 546 Finegoldia magna, 971, 1132, 1137 Eubacterium cellulosolvens, 8, 868, 877 Facklamia sourekii, 541, 542, 544 FIRMICUTES, 1–12, 19, 139, 330, 392, 396, Eubacterium combesii, 877, 867 Facklamia tabacinasalis, 542, 544 423, 427, 457, 481, 539, 541, 542, 546, Eubacterium contortum, 779, 792, 796, Faecalibacterium, 6, 10, 1016, 1022, 1026 559, 562, 566–568, 573, 576, 579, 580, 868, 878 Faecalibacterium prausnitzii, 1022, 1024, 586, 608, 617, 629, 643, 711, 736, 829, Eubacterium coprostanoligenes, 867, 878 1026, 1027, 1038, 1039 832, 836, 837, 839, 841–843, 850, 851, Eubacterium cylindroides, 661, 710, 869, 876, faecalis (Enterococcus), 249, 250, 515, 534, 866, 867, 893, 897, 900, 902, 905, 912, 878, 1299 594–600, 601, 608, 716, 930, 972 913, 921, 925, 927, 932, 937, 942, Eubacterium desmolans, 869, 873, 879 faecalis (Streptococcus), 594, 601, 607, 813 944–946, 954, 959–962, 974, 978, 1000, Eubacterium dolichum, 784, 869, 871, faecis (Halobacillus), 168 1008, 1012, 1022, 1024, 1026–1028, 1031, 879, 1299 faecium (Enterococcus), 594–597, 601, 604 1032, 1034, 1036, 1044, 1045, 1049, Eubacterium eligens, 868, 879 faecium (Phascolarctobacterium), 1060, 1051–1053, 1063, 1069, 1071, 1072, 1081, Eubacterium fissicatena, 868, 880 1100, 1102, 1116 1083, 1087, 1090, 1091, 1094, 1098, 1100, Eubacterium formicigenerans, 941–943 faecium (Streptococcus), 604, 799, 813 1102, 1118, 1150, 1154, 1161, 1164, 1166, Eubacterium hadrum, 880 Faenia rectivirgula, 440 1167, 1169, 1171, 1172, 1180, 1181, 1185, Eubacterium hallii, 868, 881 fallax (Clostridium), 774, 784, 802, 831 1188, 1189, 1191, 1192, 1203, 1224, 1232, Eubacterium infirmum, 7, 869, 881, 888, 1157 fallax (Leuconostoc), 628–630, 633 1249, 1258, 1269, 1272, 1275, 1282, 1299, Eubacterium lentum, 867 farciminis (Lactobacillus), 471, 474, 476, 1304, 1309, 1310, 1312, 1314 Eubacterium limosum, 7, 865, 867, 871, 875, 480, 496 firmus (Bacillus), 4, 33, 48, 54, 65, 69, 78, 96, 897, 904, 943, 1150, 1154, 1299 farraginis (Bacillus), 4, 53–54, 99 99, 107, 108, 113, 125 Eubacterium minutum, 868, 869, 881, 1157 fasciatum (Heliophilum), 914, 918 flavefaciens (Ruminococcus), 661, 1016, 1022 Eubacterium moniliforme, 757, 770, 801, 810, Fastidiosipila, 10, 1016, 1022, 1028 flavescens (Corynebacterium), 260 869, 882 Fastidiosipila sanguinis, 1028, 1029, 1031, flavescens (Enterococcus), 600 Eubacterium multiforme, 757, 770, 810, fastidiosus (Alicyclobacillus), 230, 238, 240, flavithermus (Anoxybacillus), 71, 121, 869, 882 fastidiosus (Bacillus), 33, 36, 48, 54, 78, 99 134–136, 140, 152, 159 Eubacterium nitritogenes, 757, 810, 869, 882 favisporus (Paenibacillus), 285 Flavobacterium, 1093 Eubacterium nodatum, 869, 883, 1154, 1157, felis (Staphylococcus), 397, 399, 407, 411 Flavobacterium denitrificans, 324 1158 felsineum (Clostridium), 774–776, 808, 832, Flavobacterium okeanokoites, 374, 376 Eubacterium oxidoreducens, 868, 883, 954, 834, 841, 842, 852 fleurettii (Staphylococcus), 399, 407 955, 959 ferintoshensis (Lactobacillus), 475, 496 Flexibacter elegans, 361 Eubacterium plautii, 795, 869, 883 fermentans (Acidaminococcus), 1061, 1067, flexus (Bacillus), 4, 48, 54, 100, 109, 121, 125 Eubacterium plexicaudatum, 868, 884 1068, 1071, 1100, 1116 flocculiformis (Trichococcus), 585, 586, 587 Eubacterium pyruvativorans, 884 fermentans (Brevibacterium), 571 flueggei (Selenomonas), 1078, 1107, 1110 Eubacterium ramulus, 868, 884, 955, 958, 1034 fermentans (Halanaerobium), 1195, 1197, 1199 fluorescens (Pseudomonas), 551 Eubacterium rectale, 868, 885, 934, 947, 953, fermentans (Pleosinus), 1060 fluvialis (Vagococcus), 600, 616, 617 954, 958 fermentum (Amphibacillus), 131, 132, foetida (Holophaga), 959–961, 1035, 1036 Eubacterium ruminantium, 868, 886, 931 133, 187 fonticola (Paenibacillus), 294, Eubacterium saburreum, 868, 886, 937, 945 fermentum (Lactobacillus), 467–469, 472, foraminis (Bacillus), 124 Eubacterium saphenum, 887, 1154, 1157, 1158 474–477, 479, 482, 497, 507, fordii (Bacillus), 4, 53, 54, 100 Eubacterium siraeum, 10, 869, 887, 1019, ferriacetica (Thermincola), 1001, 1002 formatexigens (Bryantella), 924, 926, 927 1022, 1024, 1039, 1040 ferriorganovorum (Thermovenabulum), formicaceticum (Clostridium), 747, 775, Eubacterium sulci, 869, 881, 887, 1154 1258, 1290, 1291 776, 1249 Eubacterium tarantellae, 774, 784, 801, 802, ferrireducens (Carboxydothermus), 1244, formicicum (Methanobacterium), 998, 1050, 831, 869, 872, 888 1245, 1246, 1253, 1256 1115, 1165–1169 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1435 formicigenerans (Dorea), 812, 837, 941, gasseri (Lactobacillus), 468, 470, 474, glucanolyticus (Paenibacillus), 27, 271, 286 942, 943 477–479, 498 glutamica (Gelria), 1150, 1247 formicigenerans (Eubacterium), 941–943 gastricus (Lactobacillus), 477, 498 glutarica (Pelospora), 1045, 1047, 1051, 1056 formicigenes (Tepidibacter), 837, 1014, 1015 gelatini (Bacillus), 4, 54, 103 glycanilyticus (Paenibacillus), 271, 278, 286 formicilis (Gemmiger), 886 gelidum (Leuconostoc), 624, 625, 627–629, glycerini (Anaerosinus), 1074, 1075 formigenes (Oxalobacter), 1068 634, 962 glycerini (Anaerovibrio), 1074, 1075 formosus (Bacillus), 70, 300, 312, 314 Gelria, 11, 1225, 1246 glycerini (Moorella), 1247, 1248, 1251, formosus (Brevibacillus), 308, 312, 314 Gelria glutamica, 1150, 1247 1252, 1253 fornicalis (Lactobacillus), 478, 497 Gemella, 5, 6, 392, 423, 455, 534, 571, 573, 575 glycolicum (Clostridium), 757, 778, 784, 791 forsythiae (Paenibacillus), 294 Gemella bergeri, 456, 457, 458 glycolicus (Syntrophobotulus), 974, 1000 fortis (Bacillus), 4, 53, 54, 101 Gemella cuniculi, 456, 457, 458 glycyrrhizinilyticum (Clostridium), 779, frigidicarnis (Clostridium), 776 Gemella haemolysans, 455–458, 459, 1149 792, 795 frigoris (Clostridium), 776, 786, 805 Gemella morbillorum, 455–457, 458, 661 gnavus (Ruminococcus), 9, 792, 795, 812, frisingensis (Pectinatus), 1094–1098, Gemella palaticanis, 456, 457, 459 962, 1018 1099, 1119 Gemella sanguinis, 456–458, 459 gonensis (Anoxybacillus), 134–136, 140 fructivorans (Lactobacillus), 474–476, 497 geminatus (Anaeroglobus), 1071, 1072, 1073, gordonae (Bacillus), 70 fructosum (Leuconostoc), 633 1081, 1083 gordonae (Paenibacillus), 294 fructosus (Lactobacillus), 633, 649 GEMMATIMONADETES, 1172 gordonii (Streptococcus), 656, 657, 676, 677, frumenti (Lactobacillus), 469, 474, 497 Gemmiger formicilis, 886 694, 699, 707 fuchuensis (Lactobacillus), 474, 497 genitalium (Mycoplasma), 37 gottschalkii (Anaerobranca), 1163, 1164 fulgidum (Planifilum), 434, 447 gentianae (Syntrophus), 959 Gracilibacillus, 4, 20, 24, 61, 70, 132, 160, 163, fulgidus (Archaeoglobus), 1068 Geobacillus, 4, 20, 24, 39, 40, 48, 49, 61, 70, 171, 181, 183, 189, 191, 193 fumarioli (Bacillus), 4, 21, 31, 33, 34, 42, 47, 71, 121, 122, 144, 191, 192, 1188 Gracilibacillus boraciitolerans, 160, 161, 162, 48, 50, 51, 54, 60, 67, 78, 101, 120, 284, Geobacillus caldoproteolyticus, 153, 160 163 299, 308, 311, Geobacillus caldoxylosilyticus, 146, 147, Gracilibacillus dipsosauri, 132, 160, 161, 162, funditum (Carnobacterium), 549, 550, 153, 154 163, 166, 196 552–554, 556, 582 Geobacillus debilis, 144, 146, 147, 153, 155 Gracilibacillus halotolerans, 132, 160, 161, funiculus (Bacillus), 4, 48, 54, 101 Geobacillus gargensis, 146, 147, 153, 155 163, 167 Fusibacter, 11, 1146, 1150, 1151 Geobacillus jurassicus, 146, 147, 153, 155 Gracilibacillus orientalis, 160–162, 163 Fusibacter paucivorans, 1137, 1151, 1152, 1153 Geobacillus kaustophilus, 146–148, 153, 155 Gracilibacter, 6, 7, 736, 910, 911, 912 fusiformis (Bacillus), 5, 24, 33, 54, 68, 71, 78, Geobacillus lituanicus, 146, 148, 153, 156 Gracilibacter thermotolerans, 12, 910, 911, 912 101, 103, 111, 114, 115, 117, 121 Geobacillus pallidus, 145–147, 153, 156 GRACILIBACTERACEAE, 6, 7, 736, 910, 912 Fusobacterium, 808, 931, 939, 1026, 1063, 1169 Geobacillus stearothermophilus, 39, 40, gracilis (Campylobacter), 1043 Fusobacterium alocis, 1013 144–148, 153, 154, 191, 1188, 1189 graminis (Lactobacillus), 475, 480, 498 Fusobacterium mortiferum, 885 Geobacillus subterraneus, 146, 147, 153, 156 graminis (Paenibacillus), 286 Fusobacterium necrogenes, 808 Geobacillus tepidamans, 135, 145, 146, 148, granivorans (Paenibacillus), 286 Fusobacterium polysaccharolyticum, 802, 863 153, 157 grantii (Clostridium), 779 Fusobacterium prausnitzii, 1019, 1022, Geobacillus thermocatenulatus, 121, Granulicatella, 6, 537, 564, 565, 574, 594 1026, 1027 146–148, 153, 157 Granulicatella adiacens, 574, 575, 577, 661 Fusobacterium sulci, 887 Geobacillus thermodenitrificans, 121, 146, Granulicatella balaenopterae, 574, 575, 147, 153, 157 578, 661 galactophilus (Bacillus), 70, 312, 313 Geobacillus thermoglucosidasius, 146–148, Granulicatella elegans, 574, 575, 578, 661 galactosidilyticus (Bacillus), 4, 54, 103, 127 153, 157 grayi (Listeria), 245–248, 250, 253, 255, 260 Gallicola, 11, 1008, 1029, 1132, 1133, 1143 Geobacillus thermoleovorans, 145–148, 153, Guggenheimella, 11, 1150, 1153, 1154 Gallicola barnesae, 1132, 1137 156, 158 Guggenheimella bovis, 1154 gallinaceus (Streptococcus), 678, 692 Geobacillus thermoleovorans subsp. guilliermondii (Oscillospira), 922, 1023, gallinarum (Carnobacterium), 550, 552, 554, stromboliensis, 158, 160 1031, 1032 555, 556, 569 Geobacillus toebii, 146, 148, 153, 158 guttoideum (Desulfotomaculum), 9, 791, gallinarum (Enterococcus), 594, 596, 597, Geobacillus uzenensis, 146, 147, 153, 158, 962 815, 990 600, 601, 604, 617 Geobacillus vulcani, 146, 148, 159 gallinarum (Lactobacillus), 498 Geobacter argillaceus, 1128 hadrum (Eubacterium), 880 gallinarum (Mycoplasma), geothermicum (Desulfotomaculum), 990, haemolysans (Gemella), 455–458, 459, 1149 gallinarum (Staphylococcus), 398, 406, 407, 419 994, 999 haemolyticum (Clostridium), 779 gallinarum (Streptococcus), 604 Geotoga, 850 haemolyticus (Staphylococcus), 392, gallolyticus (Streptococcus), 678, 692, 693 gestii (Heliobacterium), 914, 917 396–399, 407 gallolyticus subsp. gallolyticus ghonii (Clostridium), 756, 772, 777, 790, 814, Haemophilus influenzae, 26 (Streptococcus), 678, 693 819, 869 Hafnia, 981 gallolyticus subsp. macedonicus gibsoniae (Desulfotomaculum), 994, 999 hafniense (Desulfitobacterium), 975–980, (Streptococcus), 678, 693 gibsonii (Bacillus), 4, 24, 33, 54, 78, 103 981, 986 gallolyticus subsp. pasteurianus gibsonii (Kurthia), 365, 367–369, 370 haikarae (Pectinatus), 1094, 1096–1098, 1099 (Streptococcus), 678, 702 gilvus (Enterococcus), 596, 600, 604 hajekii (Macrococcus), 425 ganghwense (Clostridium), 752, 777, 779 ginsengarvi (Paenibacillus), 295 Halalkalibacillus, 20 gansuensis (Paenibacillus), 286 ginsengisoli (Brevibacillus), 308, 311, 314 Halanaerobacter, 11, 1196, 1208–1210, Garciella, 7, 365, 897, 900 ginsengisoli (Paenibacillus), 295 1212, 1216 Garciella nitratireducens, 850, 897, 900, 901, Globicatella, 5, 513, 541, 544, 1134 Halanaerobacter chitinivorans, 1207, 1208, 902, 903, 1145 Globicatella sanguinis, 539, 544, 545, 546, 1212, 1213, 1214 gargensis (Geobacillus), 146, 147, 153, 155 576, 709 Halanaerobacter lacunarum, 1207, 1209, garvieae (Lactococcus), 600, 711, 712, 715, Globicatella sulfidifaciens, 544, 545, 546 1212, 1213, 1214 716, 719, 720, 722 globispora (Sporosarcina), 361, 377, 378, 379 Halanaerobacter salinarius, 1207, 1212, 1213, garvieae (Streptococcus), 720 globisporus (Bacillus), 24, 70, 359, 361, 371, 1214 gasicomitatum (Leuconostoc), 624, 378, 379 HALANAEROBIACEAE, 11, 17, 849, 850, 627–630, 634 globisporus subsp. marinus (Bacillus), 371 1191–1193, 1195, 1197, 1201–1204, gasigenes (Clostridium), 777 glucanolyticus (Bacillus), 70, 96, 286 1208, 1213 1436 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA

HALANAEROBIALES, 6, 10, 11, 17, 736, Haloincola saccharolyticus subsp. helveticus (Lactobacillus), 469, 473, 1191, 1195–1197, 1201–1203, 1210, 1212, saccharolyticus, 1200 475–477, 499 1215, 1216, 1220, 1221 Haloincola saccharolyticus subsp. helveticum (Thermobacterium), 499 Halanaerobium, 11, 17, 1191–1193, 1195, senegalensis, 1200 hemicellulosilyticus (Bacillus), 124 1196, 1198, 1199, 1201, 1204, 1209, 1212 Halolactibacillus, 4, 20, 71, 132, 168, 170–174, henryi (Streptococcus), 711 Halanaerobium acetethylicum, 1192, 1197, 176, 181, 183, 186, 187, 582–584 herbarius (Alicyclobacillus), 230, 231, 238, 240 1199, 1209 Halolactibacillus halophilus, 132, 161, herbersteinensis (Bacillus), 125 Halanaerobium alcaliphilum, 1195, 1197, 1199 169–173, 174, 582, 583 herbivorans (Clostridium), 780, 803 Halanaerobium congolense, 1195, 1197, 1199 Halolactibacillus miurensis, 132, 169–173, hermanniensis (Enterococcus), 596, 597, 605 Halanaerobium fermentans, 1195, 1197, 1199 174, 582, 583 Hespellia, 8, 792, 921, 926, 944 Halanaerobium kushneri, 1200 Halomonas, 193 Hespellia porcina, 792, 944, 945 Halanaerobium lacusrosei, 849, Halonatronum, 17, 1210, 1215, 1216 Hespellia stercorisuis, 944, 945 1195–1197, 1200 Halonatronum saccharophilum, 1215 hesperidum (Alicyclobacillus), 230, 238, 240 Halanaerobium praevalens, 1191–1193, halophila (Sporosarcina), 164, 167, 179, 378 heterohiochii (Lactobacillus), 497 1195–1197, 1199 halophilum (Clostridium), 763, 780, 840, 850, hilgardii (Lactobacillus), 474, 475, 494, Halanaerobium saccharolyticum, 1195, 852, 903, 1150, 1153, 1192, 1193 499, 962 1197, 1200 halophilum (Desulfotomaculum), 990, 994 hippei (Propionispora), 1104, 1118 Halanaerobium saccharolyticum subsp. halophilum (Salimicrobium), 71 hirae (Enterococcus), 594, 596, 597, 601, 605 saccharolyticum, 1195, 1197, 1200 halophilus (Alkalibacillus), 129 hiranonis (Clostridium), 781 Halanaerobium saccharolyticum subsp. halophilus (Bacillus), 4, 33, 48, 54, 71, 105, hispanicus (Marinococcus), 179, 427, 428 senegalense, 1200 166, 167 hispanicus (Salinicoccus), 179, 421, 426, Halanaerobium salsuginis, 1201 halophilus (Halobacillus), 164–166, 167, 427, 428 halichoeri (Streptococcus), 711 179, 196 histaminiformans (Allisonella), 1068, 1069, Hallella, 1091 halophilus (Halolactibacillus), 132, 161, 1083 Hallella seregens, 1093 169–173, 174, 582, 583 histidinovorans (Natronincola), 737, 738, hallii (Eubacterium), 868, 881 halophilus (Lentibacillus), 175, 176, 177 841, 842, 852 halmapalus (Bacillus), 26, 33, 54, 105 halophilus (Marinococcus), 178, 179, 180, 962 histolyticum (Clostridium), 781, 788, 804, haloalkaliphilus (Alkalibacillus), 128, 129 halophilus (Pediococcus), 514, 611, 614 1166 haloalkaliphilus (Bacillus), 24, 33, 48, 71, halophilus (Planococcus), 178–180, 349 hodogayensis (Paenibacillus), 287 128, 129, 167 halophilus (Tetragenococcus), 514, 607, Holdemania, 12, 1299, 1307, 1309, 1310, 1313 Halobacillus, 4, 15, 20, 71, 164, 176, 181, 183, 611–613, 614 Holdemania filiformis, 1304, 1309, 1310–1312 189, 193, 196, 378 halophilus (Virgibacillus), 200 Holophaga, 960 Halobacillus aidingensis, 168 Halothermothrix, 11, 17, 1195, 1196, Holophaga foetida, 959–961, 1035, 1036 Halobacillus campisalis, 168 1201, 1202 hominis (Facklamia), 541, 542–544, 546 Halobacillus dabanensis, 168 Halothermothrix orenii, 849, 850, 1191, 1192, hominis (Mycoplasma), 962 Halobacillus faecis, 168 1201–1203, 1204, 1205 hominis (Staphylococcus), 392, 396–398, Halobacillus halophilus, 164–166, 167, halotolerans (Gracilibacillus), 132, 160, 161, 408, 409 179, 196 163, 167 hominis subsp. hominis (Staphylococcus), 408 Halobacillus karajensis, 164, 166, 168 halotolerans (Jeotgalicoccus), 421 hominis subsp. novobiosepticus Halobacillus kuroshimensis, 168 halotolerans (Lactobacillus), 629, 647, 648 (Staphylococcus), 398, 408, 409 Halobacillus litoralis, 165, 167, 168, 196 halotolerans (Marinococcus), 178, 179, 180 homohiochii (Lactobacillus), 474, 475, Halobacillus locisalis, 168 halotolerans (Weissella), 629, 643, 647, 648 499, 512 Halobacillus mangrovi, 168 hammesii (Lactobacillus), 474, 498 homopropionicum (Clostridium), 777, 779, Halobacillus profundi, 168 hamsteri (Lactobacillus), 499 780, 782 Halobacillus salinus, 167 hansenii (Ruminococcus), 661, 1018 hongkongensis (Cohnella), 317, 319, 320 Halobacillus thailandensis, 167 hansenii (Streptococcus), 661, 1016, 1018 hongkongensis (Paenibacillus), 317 Halobacillus trueperi, 164, 165, 167, 168 harbinense (Ethanoligenens), 766, 1024 horikoshii (Anaerobranca), 1161, 1163 Halobacillus yeomjeoni, 168 harei (Peptoniphilus), 1009, 1011, 1030, 1136 horikoshii (Bacillus), 4, 24, 33, 55, 105 HALOBACTERIALES, 1192 harei (Peptostreptococcus), 1008, 1136 horti (Bacillus), 33, 55, 78, 106 HALOBACTEROIDACEAE, 11, 1191–1193, hastiforme (Clostridium), 11, 850, humi (Bacillus), 125 1195–1197, 1202, 1203, 1207, 1210, 1212, 1137–1139, 1142, 1144, 1146, 1147 humicus (Paenibacillus), 295 1213, 1215, 1216, 1219, 1221, 1222 hathewayi (Clostridium), 780 hungatei (Butyrivibrio), 804, 927, 930, 934, Halobacteroides, 11, 1196, 1207, 1208, 1210, Helcococcus, 11, 17, 1132, 1143 937, 962 1214, 1222 Helcococcus kunzii, 1132, 1133, 1134, 1137 hungatei (Clostridium), 10, 765, 766, 782, Halobacteroides acetoethylicus, 1197, Helcococcus ovis, 1133, 1134, 1135 785, 796, 821 1199, 1209 Heliobacillus, 7, 917, 918 hungatei (Methanospirillum), 998–1000, Halobacteroides elegans, 1207, 1208, 1209 Heliobacillus mobilis, 914, 918 1035, 1036, 1045, 1046, 1049–1053, 1056 Halobacteroides halobius, 1191, 1192, 1207, HELIOBACTERIACEAE, 7, 736, 913 hwajinpoensis (Bacillus), 55, 106 1208, 1209, 1219 Heliobacterium, 7, 913, 914, 916 hydrogenalis (Anaerococcus), 1130 Halobacteroides lacunaris, 1203, 1209, 1214 Heliobacterium chlorum, 914, 916, 917 hydrogenalis (Peptostreptococcus), halobius (Halobacteroides), 1191, 1192, Heliobacterium gestii, 914, 917 1008, 1130 1207, 1208, 1209, 1219 Heliobacterium modesticaldum, 913, 914, 917 hydrogenoformans (Acidaminobacter), 1150, Halocella, 11, 1196, 1201, 1202, 1204 Heliobacterium sulfidophilum, 914, 917 1151, 1153, 1166, 1169 Halocella cellulosilytica, 1195, 1201, 1202, Heliobacterium undosum, 914, 918 hydrogenoformans (Carboxydothermus), 1204 Heliophilum, 7, 913, 914, 917, 918 979, 1244, 1245 halodenitrificans (Bacillus), 33, 48, 176, 183, Heliophilum fasciatum, 914, 918 hydrogenotrophicus (Ruminococcus), 195, 200, 202 Heliorestis, 7, 913, 914, 917, 919 962, 1018 halodenitrificans (Virgibacillus), 176, 183, Heliorestis baculata, 914, 919 hydrophila (Aeromonas), 551 194, 195, 202 Heliorestis convoluta, 914, 919 hydrothermale (Desulfacinum), 1271 halodurans (Bacillus), 4, 35–37, 48, 54, 78, Heliorestis daurensis, 914, 919 hydroxybenzoicum (Clostridium), 1137, 105, 182 heliotrinireducens (Slackia), 1015 1141, 1169 halodurans (Lentibacillus), 177, 183 heliotrinreducens (Peptostreptococcus), 1008 hydroxybenzoicum (Sporotomaculum), 959, Haloincola saccharolyticus, 1197 hellenica (Weissella), 643, 645–647, 648 999, 1036 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1437 hydroxybenzoicus (Sedimentibacter), 850, intestinalis (Streptococcus), 685, 686 Klebsiella pneumoniae, 1095 1137, 1140, 1141, 1144 inulinus (Sporolactobacillus), 386, 388, 389 Klebsiella terrigena, 34 hyicus (Staphylococcus), 393, 397, 399, 404, invisus (Dialister), 1069, 1080, 1081, 1082, 1083 kloosii (Staphylococcus), 398, 406, 410 409, 416 invocatus (Brevibacillus), 308, 312, 314 kluyveri (Clostridium), 785, 786, 789 hyicus subsp. chromogenes (Staphylococcus), irregulare (Clostridium), 767, 772, 779, 782, kobensis (Bacillus), 70, 287 404, 410 784, 789–791 kobensis (Paenibacillus), 278, 287, 290 hyicus subsp. hyicus (Staphylococcus), isatidis (Clostridium), 764, 784, 811, 821 kocurii (Planococcus), 348–350, 353 409, 410 Isobaculum, 512, 549, 555, 564, 579, 587 kofuensis (Sporolactobacillus), 389 hylemonae (Clostridium), 782, 812 Isobaculum melis, 579, 580, 586 koleovorans (Paenibacillus), 287 hyointestinalis (Streptococcus), 678, 694) isophthalicicum (Pelotomaculum), 973, koreense (Planomicrobium), 373–375, 385 hyovaginalis (Streptococcus), 660, 678, 695, 996, 997 koreensis (Bacillus), 125 703, 709 italicus (Enterococcus), 600, 605, koreensis (Paenibacillus), 278, 287 italicus (Thermoanaerobacter), 1226, 1229, koreensis (Sporosarcina), 377, 378, 379 iburiense (Alkalibacterium), 558, 559, 582 1230, 1234 koreensis (Tetragenococcus), 611, 612, ictaluri (Streptococcus), 711 ivanovii (Listeria), 244–246, 248, 250–253, 256 615, 616 idriensis (Bacillus), 125 ivanovii subsp. ivanovii (Listeria), 256 koreensis (Virgibacillus), 183, 194, 195, ignava (Facklamia), 541, 542, 544 ivanovii subsp. londoniensis (Listeria), 248, 256 200, 202 ignava (Johnsonella), 937, 945, 946, 962 ivorii (Peptoniphilus), 1011, 1030, 1137 koreensis (Weissella), 643, 645–647, 648 Ignavigranum, 5, 513, 541, 546, 547, 562, 573, ivorii (Peptostreptococcus), 1008, 1137 kribbensis (Bacillus), 125 576, 594 kribbensis (Paenibacillus), 288 Ignavigranum ruoffiae, 539, 541–547, 567, 573 jalaludinii (Mitsuokella), 1090, 1091, 1093 kribbensis (Shimazuella), 434, 448 iheyensis (Oceanobacillus), 176, 181–183, 184 jamilae (Paenibacillus), 287 kristjanssonii (Caldicellulosiruptor), illinoisensis (Paenibacillus), 287, 291 jejuense (Clostridium), 754, 785, 802, 803, 828 1275–1277, 1278 imperiale (Brevibacterium), 571 jensenii (Lactobacillus), 474, 475, 478, 479, 500 krulwichiae (Bacillus), 4, 55, 78, 107, 123, incerta (Desemzia), 565, 568–572, 579, jeotgali (Bacillus), 4, 33, 55, 78, 107 126, 128 582, 587 jeotgali (Salinicoccus), 429 kunkeei (Lactobacillus), 475, 502 incertum (Bacterium), 568, 569, 571, 572 Jeotgalibacillus, 4, 176, 181, 348, 364, 371 kunzii (Helcococcus), 1132, 1133, 1134, 1137 incertum (Brevibacterium), 568, 571, 572 Jeotgalibacillus alimentarius, 24, 70, 183, 364, kuroshimensis (Halobacillus), 168 indicireducens (Alkalibacterium), 558, 559 365, 371 Kurthia, 4, 252, 253, 258, 260, 261, 348, 361, indicus (Bacillus), 48, 55, 78, 106 Jeotgalicoccus, 5, 179, 392, 421, 422, 427 364, 462, 1303 indicus (Caloramator), 834–836, 838, 848 Jeotgalicoccus halotolerans, 421 Kurthia gibsonii, 365, 367–369, 370 indolicus (Peptococcus), 971, 1136 Jeotgalicoccus pinnipedialis, 422 Kurthia sibirica, 367–369, 370 indolicus (Peptoniphilus), 1009, 1011, Jeotgalicoccus psychrophilus, 422, 962 Kurthia zopfii, 356, 365–369, 370 1030, 1136 johnsonae (Cytophaga), 361 kushneri (Halanaerobium), 1200 indolicus (Peptostreptococcus), 1008, 1136 Johnsonella, 8, 921, 926, 932, 939, 944, 945 kuznetsovii (Desulfotomaculum), 994 indoligenes (Moryella), 948, 949, 950 Johnsonella ignava, 937, 945, 946, 962 indolis (Clostridium), 755, 765, 780, 783, 791, johnsonii (Lactobacillus), 470, 472, 474, Laceyella, 5, 434, 441, 443, 444, 444–446, 448 809, 815 477, 500 Laceyella putida, 434, 444, 445 iners (Lactobacillus), 478, 479, 481, 499 Jonesia denitrificans, 253, 260 Laceyella sacchari, 434–436, 444 infantarius (Streptococcus), 678, 692, 695, 697 jonesii (Synergistes), 1169 Lachnobacterium, 8, 921, 926, 944, 946, 953 infantarius subsp. coli (Streptococcus), 678, josui (Clostridium), 10, 765, 766, 782, 785, Lachnobacterium bovis, 946–947, 947, 695, 697 796, 821 955, 962 infantarius subsp. infantarius jurassicus (Geobacillus), 146, 147, 153, 155 Lachnospira, 6, 8, 10, 12, 736, 868, 921, (Streptococcus), 678, 697 juripiscarius (Lentibacillus), 175, 176, 177, 200 923–930, 932, 934, 937, 940–942, infantis (Bacillus), 125 944–947, 949, 951–954, 958, 961, 962, infantis (Streptococcus), 657, 676, 677, 695 kakegawensis (Alicyclobacillus), 230, 231, 1016, 1029, 1060, 1299 infelix (Selenomonas), 1078, 1107, 1111 238, 241 Lachnospira multipara, 921, 922 infernum (Desulfacinum), 1271 kalixensis (Lactobacillus), 477, 500 Lachnospira pectinoschiza, 868, 921, 922, infernus (Bacillus), 4, 34, 35, 47, 48, 55, 61, kamchatkensis (Anoxybacillus), 134–136, 140 923, 934, 962 64, 68, 78, 106, 1185 kandleri (Lactobacillus), 629, 643, 647, 648 LACHNOSPIRACEAE, 6, 8, 10, 12, 736, infirmum (Eubacterium), 7, 869, 881, 888, 1157 kandleri (Weissella), 629, 643, 647, 648 868, 921, 922–928, 930, 937, 940, 942, influenzae (Haemophilus), 26 kapialis (Lentibacillus), 177, 183 944–947, 949, 951, 952, 954, 955, 958, ingluviei (Lactobacillus), 500 karajensis (Halobacillus), 164, 166, 168 961, 962, 1016, 1029, 1060, 1299 inhae (Leuconostoc), 634 kaustophilus (Bacillus), 70, 152, 153, 155, 159 lacisalsi (Lentibacillus), 175, 176, 177, 200 inhibens (Carnobacterium), 549, 552–554, 556 kaustophilus (Geobacillus), 146–148, 153, 155 lacrimalis (Peptoniphilus), 1009, 1011, iniae (Streptococcus), 662, 696 kefiranofaciens (Lactobacillus), 469, 479, 1030, 1137 innocua (Listeria), 244–248, 250–253, 256 481, 501 lacrimalis (Peptostreptococcus), 1008, 1137 innocuum (Clostridium), 661, 710, 783, 784, kefiranofaciens subsp. kefiranofaciens lactaris (Ruminococcus), 1018 869, 1299 (Lactobacillus), 476, 501 lactatifermentans (Clostridium), 770, 786, inopinata (Erysipelothrix), 1299, 1300, 1302, kefiranofaciens subsp. kefirgranum 792, 804 1304, 1305, 1311 (Lactobacillus), 476, 501 lacticifex (Selenomonas), 1094, 1095, 1111, 1119 inopinatus (Pediococcus), 513–518, 519, 613 kefiri (Lactobacillus), 476, 494, 501, 505 lacticum (Microbacterium), 260, 262 insolitus (Bacillus), 24, 33, 34, 48, 49, 55, 57, keratinophilus (Thermoanaerobacter), lactis (Bacterium), 711, 718 78, 107, 113, 114, 361, 365 1231, 1239 lactis (Lactobacillus), 490 intermedius (Staphylococcus), 393, 398, 399, kestanbolensis (Anoxybacillus), 134–136, 140 lactis (Lactococcus), 471, 511, 550, 629, 633, 405, 410, 411, 416, 420 kimchii (Lactobacillus), 475, 480, 500 711–720 intermedius (Streptococcus), 656, 663, 686, kimchii (Leuconostoc), 629, 635 lactis (Leuconostoc), 625, 627–631, 635, 636 696, 707 kimchii (Weissella), 647 lactis (Paenibacillus), 288 intermedius (Thermoactinomyces), 434, 438, kitaharae (Oenococcus), 637–641, 642 lactis (Streptococcus), 711, 718, 719 440, 442, 443 kitasatonis (Lactobacillus), 502 lactis (Thermobacterium), 490 intestinale (Clostridium), 784, 802, 831, 1115 kivui (Acetogenium), 1235 lactis subsp. cremoris (Lactococcus), 711, intestinalis (Lactobacillus), 500 kivui (Thermoanaerobacter), 1225, 1231, 713, 714, 716–718, 720 intestinalis (Roseburia), 868, 954, 955, 956, 962 1235, 1249, 1250 lactis subsp. hordniae (Lactococcus), 714, 720 1438 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA lactis subsp. lactis (Lactococcus), 712–718, Lactobacillus diolivorans, 471, 496 Lactobacillus perolens, 505 719, 720 Lactobacillus divergens, 549, 552, 555 Lactobacillus piscicola, 550–552, 556 lactoaceticus (Caldicellulosiruptor), Lactobacillus durianis, 482, 496 Lactobacillus plantarum, 260, 286, 287, 1275–1277, 1278 Lactobacillus equi, 496, 512 469–477, 479–482, 492, 505, 506, 511, LACTOBACILLACEAE, 4, 5, 20, 259, 464, Lactobacillus farciminis, 471, 474, 476, 480, 496 512, 516 465, 481–483, 512, 551, 629, 1304 Lactobacillus ferintoshensis, 475, 496 Lactobacillus plantarum subsp. LACTOBACILLALES, 2, 5, 8, 19, 388, 464, Lactobacillus fermentum, 467–489, 472, argentoratensis, 506 481, 512, 514, 539, 559, 562, 566–568, 474–477, 479, 482, 497, 507 Lactobacillus plantarum subsp. plantarum, 506 573, 579, 580, 594, 607, 612, 629, 640, Lactobacillus fornicalis, 478, 497 Lactobacillus pontis, 469, 471, 474, 506 643, 711, 1299 Lactobacillus fructivorans, 474–476, 497 Lactobacillus psittaci, 506, 507 Lactobacillus, 5, 169, 252, 258, 259, 261, 386, Lactobacillus fructosus, 633, 649 Lactobacillus reuteri, 469–471, 473, 474, 477, 388, 389, 464, 465, 499, 511–516, 550, Lactobacillus frumenti, 469, 474, 497 479, 481, 482, 493, 495, 497, 498, 500, 555, 568, 571, 612, 629, 639, 643, 646, Lactobacillus fuchuensis, 474, 497 503, 504, 506, 507, 510 714, 865, 866, 939, 1312, 1313 Lactobacillus gallinarum, 498 Lactobacillus rhamnosus, 469, 470, 474, 476, Lactobacillus acetotolerans, 476, 491, 512 Lactobacillus gasseri, 468, 470, 474, 477, 479, 507 Lactobacillus acidifarinae, 474, 491 477–479, 498 Lactobacillus rogosae, 512 Lactobacillus acidipiscis, 476, 482, 483, 491 Lactobacillus gastricus, 477, 498 Lactobacillus rossiae, 469, 479, 482, 507 Lactobacillus acidophilus, 469, 471, 474, 476, Lactobacillus graminis, 475, 480, 498 Lactobacillus ruminis, 477, 479, 507 477, 481, 491, 493–495, 498, 500 Lactobacillus halotolerans, 629, 647, 648 Lactobacillus saerimneri, 507 Lactobacillus agilis, 468, 479, 492 Lactobacillus hammesii, 474, 498 Lactobacillus sakei, 469, 471, 473–477, 480, Lactobacillus algidus, 474, 476, 481, 483, 492 Lactobacillus hamsteri, 499 481, 495, 507, 630 Lactobacillus alimentarius, 474, 476, 492, 505 Lactobacillus helveticus, 469, 473, Lactobacillus sakei subsp. carnosus, 495, 508 Lactobacillus amylolyticus, 492 475–477, 499 Lactobacillus sakei subsp. sakei, 508 Lactobacillus amylophilus, 469, 492 Lactobacillus heterohiochii, 497 Lactobacillus salivarius, 474, 476, 477, Lactobacillus amylovorus, 474, 491, 492, 498 Lactobacillus hilgardii, 474, 475, 494, 499, 481–483, 491–493, 496, 502, 507, 508 Lactobacillus animalis, 472, 480, 482, 493, 503 962 Lactobacillus salivarius subsp. salicinius, 508 Lactobacillus antri, 477, 493 Lactobacillus homohiochii, 474, 475, 499, 512 Lactobacillus salivarius subsp. salivarius, 508 Lactobacillus aviarius, 482, 493 Lactobacillus iners, 478, 479, 481, 499 Lactobacillus sanfranciscensis, 469, 470, 474, Lactobacillus aviarius subsp. araffinosus, 493 Lactobacillus ingluviei, 500 475, 479, 508 Lactobacillus aviarius subsp. aviarius, 493 Lactobacillus intestinalis, 500 Lactobacillus satsumensis, 475, 509 Lactobacillus bavaricus, 465, 508 Lactobacillus jensenii, 474, 475, 478, 479, 500 Lactobacillus sharpeae, 479, 509 Lactobacillus bifermentans, 476, 483, 493 Lactobacillus johnsonii, 470, 472, 474, 477, 500 Lactobacillus spicheri, 474, 494, 509 Lactobacillus brevis, 467, 471, 473, 474–477, Lactobacillus kalixensis, 477, 500 Lactobacillus suebicus, 470, 471, 475, 482, 509 479, 494 Lactobacillus kandleri, 629, 643, 647, 648 Lactobacillus suntoryeus, 509 Lactobacillus buchneri, 471, 473, 475, 476, Lactobacillus kefiranofaciens, 469, 479, Lactobacillus thermotolerans, 510 481, 494, 504 481, 501 Lactobacillus trichodes, 497 Lactobacillus bulgaricus, 490 Lactobacillus kefiranofaciens subsp. Lactobacillus ultunensis, 477, 510 Lactobacillus carnis, 552, 556 kefiranofaciens, 476, 501 Lactobacillus vaccinostercus, 479, 482, 510 Lactobacillus casei, 470, 472–474, 476, 477, Lactobacillus kefiranofaciens subsp. Lactobacillus vaginalis, 478, 479, 510 481, 494, 504, 507, 511, 516 kefirgranum, 476, 501 Lactobacillus versmoldensis, 476, 510 Lactobacillus casei subsp. Lactobacillus kefiri, 476, 494, 501, 505 Lactobacillus viridescens, 629, 643, 647, 648 pseudoplantarum, 504 Lactobacillus kimchii, 475, 480, 500 Lactobacillus vitulinus, 465, 1299, 1309 Lactobacillus casei subsp. rhamnosus, 507 Lactobacillus kitasatonis, 502 Lactobacillus xylosus, 480 Lactobacillus casei subsp. tolerans, 504 Lactobacillus kunkeei, 475, 502 Lactobacillus yamanashiensis, 502 Lactobacillus catenaformis, 12, 1299, 1309 Lactobacillus lactis, 490 Lactobacillus zeae, 494, 510 Lactobacillus cellobiosus, 497 Lactobacillus leichmannii, 490 Lactobacillus zymae, 511 Lactobacillus coleohominis, 478, 494, 512 Lactobacillus lindneri, 475, 502 Lactococcus, 6, 471, 480, 511, 513–515, 550, Lactobacillus collinoides, 473, 475, 494, 495, Lactobacillus malefermentans, 475, 502 594, 600, 611, 612, 655, 656, 661, 711 504, 505 Lactobacillus mali, 260, 470, 475, 502 Lactococcus garvieae, 600, 711, 712, 715, 716, Lactobacillus composti, 523 Lactobacillus maltaromicus, 465, 549, 719, 720, 722 Lactobacillus concavus, 514 552, 556 Lactococcus lactis, 471, 511, 550, 629, 633, Lactobacillus confusus, 479, 629, 643, 647 Lactobacillus manihotivorans, 502 711–718, 719, 720 Lactobacillus coryniformis, 469, 470, Lactobacillus mindensis, 474, 480, 503 Lactococcus lactis subsp. cremoris, 711, 713, 473–475, 479, 495 Lactobacillus minor, 468, 629, 643, 647, 648 714, 716–718, 720 Lactobacillus coryniformis subsp. Lactobacillus mucosae, 474, 475, 503 Lactococcus lactis subsp. hordniae, 714, 720 coryniformis, 495 Lactobacillus murinus, 471, 472, 474, 480, Lactococcus lactis subsp. lactis, 712–718, Lactobacillus coryniformis subsp. 482, 493, 503 719, 720 torquens, 495 Lactobacillus nagelii, 503 Lactococcus piscium, 711, 712, 715, 716, 719, Lactobacillus crispatus, 470, 477–479, 491, Lactobacillus oris, 476, 479, 503 721, 722 495, 498 Lactobacillus panis, 474, 504 Lactococcus plantarum, 711, 712, 715, Lactobacillus curvatus, 474–476, 479, 480, Lactobacillus pantheris, 504, 511 719, 721 495, 508, 630 Lactobacillus parabuchneri, 471, 474, 475, 504 Lactococcus raffinolactis, 711, 712, 715, 716, Lactobacillus cypricasei, 476, 482, 496, 512 Lactobacillus paracasei, 469, 474–477, 479, 719, 721, 722 Lactobacillus delbrueckii, 465, 474, 476, 480, 494, 504 lactolyticus (Anaerococcus), 1130 481, 483, 490, 491–493, 495, 497–502, Lactobacillus paracasei subsp. paracasei, 504 lactolyticus (Peptostreptococcus), 1008, 1130 506, 510 Lactobacillus paracasei subsp. tolerans, 504 Lactosphaera, 186, 564, 586 Lactobacillus delbrueckii subsp. bulgaricus, Lactobacillus paracollinoides, 475, 504 Lactosphaera pasteurii, 565, 586, 588 469, 473, 475–477, 490 Lactobacillus parakefiri, 476, 505 lactosus (Sporolactobacillus), 389 Lactobacillus delbrueckii subsp. delbrueckii, Lactobacillus paralimentarius, 474, 480, 505 Lactovum, 6, 513, 655, 711, 722, 723 475, 479, 490 Lactobacillus paraplantarum, 472, 475, 480, Lactovum miscens, 722 Lactobacillus delbrueckii subsp. indicus, 491 482, 505, 506 lacunaris (Halobacteroides), 1203, 1209, 1214 Lactobacillus delbrueckii subsp. lactis, Lactobacillus pentosus, 471, 472, 480, 482, lacunarum (Halanaerobacter), 1207, 1209, 471–474, 476, 490 505, 506, 511 1212, 1213, 1214 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1439 lacusfryxellense (Clostridium), 762, 773, 777, Leuconostoc mesenteroides subsp. cremoris, lutrae (Vagococcus), 616, 617 786, 805 625, 627–630, 631 Lysinibacillus, 20, 24, 25, 71, 103, 112, 115, lacusrosei (Halanaerobium), 849, 1195–1197, Leuconostoc mesenteroides subsp. 117, 121 1200 dextranicum, 625, 627, 628, 630, 631 Lysinibacillus boronitolerans, 115 laevolacticus (Bacillus), 21, 33, 38, 71, 121, Leuconostoc mesenteroides subsp. Lysinibacillus sphaericus, 117 386, 388, 390 mesenteroides, 624, 625, 627, 628, 630, lyticum (Brevibacterium), 571 laevolacticus (Sporolactobacillus), 386, 631, 636, 646 388, 390 Leuconostoc oeni, 636, 642 macacae (Streptococcus), 662, 663, 697 lamae (Macrococcus), 422, 425 Leuconostoc paramesenteroides, 624, 629, macauensis (Bacillus), 125 languida (Facklamia), 541, 542, 544, 546 630, 636, 640, 643, 647, 648 macedonicus (Streptococcus), 678, 693, 694 laramiense (Clostridium), 774 Leuconostoc pseudomesenteroides, 627, 629, macerans (Bacillus), 69, 70, 289 larvae (Bacillus), 33, 70, 288, 308 630, 635 macerans (Paenibacillus), 48, 65, 70, 271, larvae (Paenibacillus), 70, 271, 273, 288, LEUCONOSTOCACEAE, 6, 464, 624, 629, 273, 289, 962 310, 609 640, 643 macmurdoensis (Sporosarcina), 377, 378, 379 larvae subsp. larvae (Paenibacillus), 273, 288 levickii (Brevibacillus), 307, 308, 311, 315 macquariensis (Bacillus), 70, 289 larvae subsp. pulvifaciens (Paenibacillus), licheniformis (Bacillus), 23, 26, 27, 32–34, macquariensis (Paenibacillus), 271, 289 121, 271, 273, 288 37–39, 42, 45, 46, 48, 49, 53, 55, 58, 59, 65, Macrococcus, 5, 15, 392, 400, 421, 422, 424–426 laterosporus (Bacillus), 69, 70, 308, 310, 70, 71, 78, 108, 117, 123, 128, 153, 278 Macrococcus bovicus, 423, 424 311, 314 limicola (Filibacter), 359–361, 362 Macrococcus brunensis, 425 laterosporus (Brevibacillus), 300, 307, 308, limnophilus (Brevibacillus), 312, 315 Macrococcus carouselicus, 423, 424, 425 310, 312, 314 limosum (Clostridium), 782, 787, 804 Macrococcus caseolyticus, 400, 423, 424, 425 latum (Caryophanon), 356, 357 limosum (Eubacterium), 7, 865, 867, 871, Macrococcus equipercicus, 422–424 lautus (Bacillus), 62, 69, 70, 288 875, 897, 904, 943, 1150, 1154, 1299 Macrococcus hajekii, 425 lautus (Paenibacillus), 27, 96, 272, 288 lindneri (Lactobacillus), 475, 502 Macrococcus lamae, 422, 425 lehensis (Bacillus), 125 linens (Brevibacterium), 571 macrosporangiidus (Alicyclobacillus), 230, leichmannii (Lactobacillus), 490 lipocalidus (Syntrophothermus), 1048, 231, 237, 238, 241 lenta (Eggerthella), 867 1054, 1055, 1056 macyae (Bacillus), 48, 56, 108 Lentibacillus, 4, 20, 71, 142, 175, 181–183, lipolytica (Selenomonas), 1078, 1106–1109, magadiensis (Tindallia), 837, 841, 842, 851, 185, 189, 191, 193, 200 1111 852, 854, 1153, 1154 Lentibacillus halodurans, 177, 183 lipolytica (Thermosyntropha), 1055, 1056 magna (Finegoldia), 971, 1132, 1137 Lentibacillus halophilus, 175, 176, 177 lipolyticus (Anaerovibrio), 1070, 1074, magnum (Clostridium), 789 Lentibacillus juripiscarius, 175, 176, 1075, 1077 magnus (Peptococcus), 971, 1132, 1166 177, 200 liquefaciens (Serratia), 211 magnus (Peptostreptococcus), 1008, 1132 Lentibacillus kapialis, 177, 183 Listeria, 4, 244–256, 258–261, 392, 423, 473, Mahella, 12, 17, 910, 1296, 1298 Lentibacillus lacisalsi, 175, 176, 177, 200 515, 571, 595, 596, 714, 715, 1303, 1304 Mahella australiensis, 1296, 1297, 1298 Lentibacillus salarius, 175, 176, 177, 200 Listeria denitrificans, 253 maitriensis (Planococcus), 348, 350, 354 Lentibacillus salicampi, 175, 176, 177, 200 Listeria grayi, 245–248, 250, 253, 255, 260 malacitensis (Bacillus), 124, 125, 126 lentimorbus (Bacillus), 33, 70, 289 Listeria innocua, 244–248, 250–253, 256 malefermentans (Lactobacillus), 475, 502 lentimorbus (Paenibacillus), 271, 273, Listeria ivanovii, 244–246, 248, 250–253, 256 malenominatum (Clostridium), 790 289, 292 Listeria ivanovii subsp. ivanovii, 256 mali (Lactobacillus), 260, 470, 475, 502 lentocellum (Clostridium), 787 Listeria ivanovii subsp. londoniensis, 248, 256 malicum (Acetobacterium), 892, 893, 894 lentoputrescens (Clostridium), 769 Listeria monocytogenes, 37, 244–253, 255, malodoratus (Enterococcus), 594, 600, 605 lentum (Eubacterium), 867 257, 261, 553, 569, 714, 715, 1303 malonica (Sporomusa), 1113, 1114 lentus (Bacillus), 42, 48, 49, 55, 61, 62, 69, 96, Listeria murrayi, 256 maltaromaticum (Carnobacterium), 552, 554, 97, 99, 105, 107 Listeria seeligeri, 245, 246, 248, 250–253, 256 555, 556 lentus (Staphylococcus), 392, 393, 399, 406, Listeria welshimeri, 245, 246, 248, 250, 252, maltaromicus (Lactobacillus), 465, 549, 411, 419, 422 253, 256 552, 556 leptospartum (Thermobacteroides), 818 LISTERIACEAE, 4, 20, 244, 252 mangenotii (Clostridium), 772, 790 leptum (Clostridium), 10, 787, 817, 869, litorale (Clostridium), 788, 819, 869, 1150, mangrovi (Halobacillus), 168 1019, 1024, 1026, 1037–1039 1169 manihotivorans (Lactobacillus), 502 Leuconostoc, 6, 512, 514–516, 515, 516, litoralis (Bacillus), 125 mannanilyticus (Bacillus), 126 612, 624, 632, 636–640, 639, 640, 643, litoralis (Halobacillus), 165, 167, 168, 196 marianensis (Thermaerobacter), 1185 645–647, 646, 714, 718 litoriperuensis (Thermosediminibacter), marimammalium (Streptococcus), 711 Leuconostoc amelibiosum, 630, 632 1287, 1288, 1289 Marinibacillus, 4, 15, 24, 61, 70, 181, 183, 348, Leuconostoc argentinum, 627–629, 631 lituanicus (Geobacillus), 146, 148, 153, 156 364, 370, 371–373 Leuconostoc carnosum, 624, 625, lituseburense (Clostridium), 757, 772, 784, Marinibacillus campisalis, 371, 373 627–630, 632 788, 789, 791 Marinibacillus marinus, 38, 364, 371 Leuconostoc citreum, 627–630, 632 ljungdahlii (Clostridium), 737, 786, 789, 1249 Marinilactibacillus, 6, 16, 172, 186–188, 512, Leuconostoc cremoris, 630, 631 locisalis (Halobacillus), 168 557, 566–568, 580–584 Leuconostoc dextranicum, 630, 631 longicatena (Dorea), 812, 837, 941–943, 947 Marinilactibacillus piezotolerans, 582, 584 Leuconostoc durionis, 633 longum (Acetonema), 1036, 1065, 1066, 1067 Marinilactibacillus psychrotolerans, 169, Leuconostoc fallax, 628–630, 633 lortetii (Clostridium), 1222 171–173, 188, 558, 560, 580, 582–584 Leuconostoc ficulneum, 633 lortetii (Sporohalobacter), 1191, 1192, 1205, Marinitoga, 850 Leuconostoc fructosum, 633 1207, 1219, 1221, 1222 Marinobacter, 193 Leuconostoc gasicomitatum, 624, luciae (Desulfotomaculum), 994 Marinococcus, 4, 5, 15, 20, 167, 178, 196, 365, 627–630, 634 luciferensis (Bacillus), 48, 50, 55, 58, 108 387, 388, 421, 426, 427 Leuconostoc gelidum, 624, 625, lugdunensis (Staphylococcus), 396–398, 411 Marinococcus albus, 166, 178, 179, 180 627–629, 634, 962 lundense (Clostridium), 771, 789, 790, 823 Marinococcus halophilus, 178, 179, 180, 962 Leuconostoc inhae, 634 lutetiensis (Streptococcus), 678, 692, 695, 697 Marinococcus halotolerans, 178, 179, 180 Leuconostoc kimchii, 629, 635 luteum (Brevibacterium), 571 Marinococcus hispanicus, 179, 427, 428 Leuconostoc lactis, 625, 627–631, 635, 636 luteus (Salinicoccus), 429 marinus (Bacillus), 24, 70, 371 Leuconostoc mesenteroides, 475, 624, 625, luti (Ruminococcus), 924, 1018 marinus (Dethiosulfovibrio), 1175, 1176 627–629, 630, 631, 636, 643, 648, 649 lutrae (Staphylococcus), 399, 411 marinus (Marinibacillus), 38, 364, 371 1440 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA marinus (Pontibacillus), 190, 215 Methanobrevibacter, 961 monocytogenes (Bacterium), 253, 255 marisflavi (Bacillus), 52, 56, 78, 127 Methanobrevibacter smithii, 961 monocytogenes (Listeria), 37, 244–253, 255, marismortui (Bacillus), 70, 195–197, 200, 202 Methanohalobium, 1211 257, 261, 553, 569, 714, 715, 1303 marismortui (Orenia), 1191, 1192, 1207, Methanohalobium evestigatum, 850, 1211 montpellierensis (Veillonella), 1061, 1216–1218, 1219, 1222 methanolicus (Bacillus), 33, 34, 48, 56, 78, 1062, 1064 marismortui (Salibacillus), 176, 183, 200, 202 109, 312 moorei (Solobacterium), 871, 1304, 1308, marismortui (Sporohalobacter), 1217, 1219, Methanosaeta, 1254, 1255 1309, 1311–1314, 1316 1222 Methanosarcina, 847, 1254, 1255 Moorella, 11, 736, 1112, 1225, 1247 marismortui (Virgibacillus), 167, 171, 176, Methanospirillum, 1044, 1151 Moorella glycerini, 1247, 1248, 1251, 183, 194, 195, 202 Methanospirillum hungatei, 998–1000, 1035, 1252, 1253 maritimus (Planococcus), 348, 350, 354 1036, 1045, 1046, 1049–1053, 1056 Moorella mulderi, 1248, 1249, 1251, 1252 Massilia, 126, 289 Methanothermobacter, 1054, 1055, 1057, Moorella thermoacetica, 454, 455, massiliensis (Bacillus), 126 1247, 1249, 1250, 1254–1256 1247–1250, 1251 massiliensis (Paenibacillus), 289 Methanothermobacter thermautotrophicus, Moorella thermoautotrophica, 1248–1251, massiliensis (Pelobacter), 959 1054, 1055, 1057, 1247, 1249, 1250, 1253 massiliensis (Streptococcus), 711 1254, 1255 moraviensis (Enterococcus), 600, 605 mathranii (Thermoanaerobacter), 1225, methoxybenzovorans (Clostridium), 765, 783, morbi (Catonella), 937–939, 940, 945, 952 1229–1231, 1235 791, 815 morbillorum (Gemella), 455–457, 458, 661 mathranii subsp. alimentarius methylpentosum (Clostridium), 10, 791 morbillorum (Streptococcus), 457, 458, 661 (Thermoanaerobacter), 1225, 1235, 1236 micra (Parvimonas), 1008, 1063, 1135, 1137 mortiferum (Fusobacterium), 885 mathranii subsp. mathranii micraerophilus (Dialister), 1080, 1082 Moryella indoligenes, 948, 949, 950 (Thermoanaerobacter), 1229–1231, MICROBACTERIACEAE, 1299 motobuensis (Paenibacillus), 290 1235, 1236 Microbacterium, 259, 571, 589, 593 mucilaginosus (Bacillus), 4, 48, 71, 122 maxima (Sarcina), 837, 843–846, 847 Microbacterium lacticum, 260, 262 mucosae (Lactobacillus), 474, 475, 503 mayombei (Clostridium), 757, 779, 784, Micrococcus, 179, 349, 399, 400, 427, 703, 847 mulderi (Moorella), 1248, 1249, 1251, 1252 789, 791 Micromonas, 1008, 1135, 1136 multacida (Mitsuokella), 1075, 1090–1092, mcbrellneri (Brevibacterium), 571 Micromonas micros, 1008, 1135 1093 mcmeekinii (Planococcus), 349, 350, 376 micronuciformis (Megasphaera), 1072, multiacidus (Bacteroides), 1092, 1093 mcmeekinii (Planomicrobium), 373, 374, 376 1083–1089, 1090 multiforme (Eubacterium), 757, 770, 810, Mechercharimyces asporophorigenens, 20, micros (Micromonas), 1008, 1135 869, 882 434, 446 micros (Peptostreptococcus), 1008, 1135 multipara (Lachnospira), 921, 922 Mechercharimyces mesophilus, 20, 434, migulanus (Aneurinibacillus), 299, 300, multivorans (Acetivibrio), 1021 445, 446 301, 308 multivorans (Tenuibacillus), 192 Megamonas, 939 migulanus (Bacillus), 70, 298, 300, 301, 312 mundtii (Enterococcus), 594, 596, 597, 605 Megasphaera, 11, 1059, 1066, 1069, 1072, milosensis (Filobacillus), 142, 144, 167 muralis (Bacillus), 126 1081, 1082, 1094, 1096, 1098, 1099, 1119 mindensis (Lactobacillus), 474, 480, 503 muriaticus (Tetragenococcus), 611–614, 615 Megasphaera cerevisiae, 1071, 1072, minor (Lactobacillus), 468, 629, 643, 647, 648 murimartini (Bacillus), 126 1083–1089 minor (Streptococcus), 655, 678, 697 murinus (Lactobacillus), 471, 472, 474, 480, Megasphaera elsdenii, 1069, 1071, 1072, minor (Weissella), 629, 643, 647, 648 482, 493, 503 1083, 1084–1088, 1089, 1094, 1205 minutum (Eubacterium), 868, 869, 881, 1157 murrayi (Listeria), 256 Megasphaera micronuciformis, 1072, miroungae (Facklamia), 542, 544, 546 muscae (Staphylococcus), 399, 412 1083–1089, 1090 miscens (Lactovum), 722 mutans (Streptococcus), 655–657, 659, 660, Megasphaera paucivorans, 1083, 1085–1089, mitis (Streptococcus), 655, 657, 676, 677, 681, 662, 663, 682, 699, 705, 707 1090 698, 704, 705 mycoides (Bacillus), 26, 27, 38, 39, 44, 46, Megasphaera sueciensis, 1083, 1085–1089, Mitsuokella, 11, 939, 1059, 1075, 1078, 1090, 48–50, 56, 57, 61, 78, 96, 110, 113, 119–121 1090 1105 Mycoplasma, 37, 807 megaterium (Bacillus), 21, 24, 26, 27, 30, 31, Mitsuokella dentalis, 1093 Mycoplasma canis, 962 33, 34, 36, 42, 48, 49, 54, 56, 64–66, 69, Mitsuokella jalaludinii, 1090, 1091, 1093 Mycoplasma genitalium, 37 70, 78, 109, 121, 125, 153, 299, 310 Mitsuokella multacida, 1075, 1090–1092, 1093 Mycoplasma hominis, 962 melis (Isobaculum), 579, 580, 586 miurensis (Halolactibacillus), 132, 169–173, Melissococcus, 512, 564, 594, 607, 612 174, 582, 583 naganoensis (Bacillus), 33, 56, 78, 110 Melissococcus plutonius, 607–609, 610 mobile (Aminobacterium), 1165, 1167, naganoensis (Pullulanibacillus), 110 mendelii (Paenibacillus), 289, 292 1169–1173 nagasakiensis (Thermaerobacter), 1184, meningitidis (Neisseria), 26 mobile (Anaerobaculum), 1166, 1174 1185, 1186 meridiei (Desulfosporosinus), 983 mobile (Carnobacterium), 549, 550, 552, 554, nagelii (Lactobacillus), 503 mesenteroides (Leuconostoc), 475, 624, 625, 556, 569 nakayamae (Sporolactobacillus), 390 627–629, 630, 631, 636, 643, 648, 649 mobilis (Anaerosporobacter), 802 nakayamae subsp. nakayamae mesenteroides subsp. cremoris mobilis (Heliobacillus), 914, 918 (Sporolactobacillus), 390 (Leuconostoc), 625, 627–630, 631 mobilis (Succinispira), 1100, 1116 nakayamae subsp. racemicus mesenteroides subsp. dextranicum modesticaldum (Heliobacterium), 913, (Sporolactobacillus), 390 (Leuconostoc), 625, 627, 628, 630, 631 914, 917 naphthalenovorans (Paenibacillus), 271, mesenteroides subsp. mesenteroides modestum (Propionigenium), 1051 278, 290 (Leuconostoc), 624, 625, 627, 628, 630, Mogibacterium, 7, 11, 1154, 1157 narugense (Thermodesulfobium), 1268, 1269 631, 636, 646 Mogibacterium diversum, 1157, 1158, 1159 natans (Sphaerotilus), 287, 327 mesophilus (Mechercharimyces), 20, 434, Mogibacterium neglectum, 1157, 1158, 1159 Natroniella, 11, 841, 1207, 1210, 1216, 1217 445, 446 Mogibacterium pumilum, 1157, 1158, 1159 Natroniella acetigena, 1191, 1192, 1207, 1215, metalliredigens (Alkaliphilus), 829, 830 Mogibacterium timidum, 869, 1154, 1157, 1216, 1219 metallireducens (Desulfitobacterium), 975, 1158, 1159 Natronincola, 6, 737, 738, 841 978, 981 Mogibacterium vescum, 1157, 1158, 1160 Natronincola histidinovorans, 737, 738, 841, Methanobacterium, 1022, 1044, 1254, 1271 mojavensis (Bacillus), 56, 59, 71, 72, 78, 94, 842, 852 Methanobacterium bryantii, 1045 109, 119, 124, 126 nealsonii (Bacillus), 56, 110 Methanobacterium formicicum, 998, 1050, MOLLICUTES, 1, 2, 12, 19, 1309 necrogenes (Fusobacterium), 808 1115, 1165–1169 moniliforme (Eubacterium), 757, 770, 801, necropolis (Virgibacillus), 183, 194–196, Methanobacterium thermalcaliphilum, 1057 810, 869, 882 200, 202 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1441 neglectum (Mogibacterium), 1157, 1158, 1159 olivae (Virgibacillus), 200 Paenibacillus assamensis, 281 neidei (Bacillus), 33, 34, 56, 57, 71, 78, 111, olivapovliticus (Alkalibacterium), 169, Paenibacillus azoreducens, 281, 285 114, 117, 365 557, 558 Paenibacillus azotofixans, 48, 273, 279, 285, 292 neidei (Viridibacillus), 111 oncorhynchi (Oceanobacillus), 177, 181–183, Paenibacillus barcinonensis, 281 Neisseria, 457 184, 200 Paenibacillus barengoltzii, 281 Neisseria meningitidis, 26 oncorhynchi subsp. incaldanensis Paenibacillus borealis, 271, 273, 282 NEISSERIACEAE, 457, 1059, 1063 (Oceanobacillus), 181–183, 184 Paenibacillus brasilensis, 282 nematophilus (Paenibacillus), 290 oncorhynchi subsp. oncorhynchi Paenibacillus campinasensis, 271, 282 neopropionicum (Clostridium), 786, 791, 804 (Oceanobacillus), 181–183, 184 Paenibacillus cellulosilyticus, 282 nepalensis (Staphylococcus), 412 oralis (Streptococcus), 655–657, 661, 676, Paenibacillus chibensis, 283 Nesterenkonia, 179, 421, 427 677, 681, 700, 704, 705, 723 Paenibacillus chinjuensis, 271, 283 nexile (Clostridium), 792 orbiscindens (Clostridium), 10, 795, 869, Paenibacillus chitinolyticus, 283, 286 niabensis (Bacillus), 126 1032, 1034 Paenibacillus chondroitinus, 269, 278, 283 niacini (Bacillus), 33, 34, 57, 111 ordalii (Vibrio), 553 Paenibacillus cineris, 271, 283 niger (Peptococcus), 971, 979, 982, 1030 Orenia, 11, 1207, 1208, 1210, 1215, 1216, Paenibacillus cookii, 27, 271, 284 nigrificans (Desulfotomaculum), 986, 989, 1217, 1222 Paenibacillus curdlanolyticus, 271, 278, 990, 1057 Orenia marismortui, 1191, 1192, 1207, 284, 290 nishizawae (Pasteuria), 329, 330, 332, 336, 1216–1218, 1219, 1222 Paenibacillus daejeonensis, 271, 284, 286 337, 341, 345 Orenia salinaria, 1217–1219, 1220 Paenibacillus dendritiformis, 29, 271, nitratireducens (Garciella), 850, 897, 900, Orenia sivashensis, 1217–1219, 1220 272, 284 901, 902, 903, 1145 orenii (Halothermothrix), 849, 850, 1191, Paenibacillus durus, 273, 279, 285, 292 nitritogenes (Eubacterium), 757, 810, 869, 882 1192, 1201–1203, 1204, 1205 Paenibacillus ehimensis, 285 nitrophenolicum (Clostridium), 790, 792 Oribacterium, 8, 921, 926, 944, 950 Paenibacillus elgii, 285 Nocardia, 336, 438 Oribacterium sinus, 950, 951 Paenibacillus favisporus, 285 NOCARDIOPSACEAE, 592 Oribaculum, 938 Paenibacillus fonticola, 294 nodatum (Eubacterium), 869, 883, 1154, orientalis (Gracilibacillus), 160–162, 163 Paenibacillus forsythiae, 294 1157, 1158 orientis (Desulfosporosinus), 983, 990 Paenibacillus gansuensis, 286 noterae (Acetoanaerobium), 1190 orientis (Desulfotomaculum), 983, 987, 1000 Paenibacillus ginsengarvi, 295 novalis (Bacillus), 57, 111 oris (Lactobacillus), 476, 479, 503 Paenibacillus ginsengisoli, 295 novyi (Clostridium), 759, 761, 780, 793, 795, orisratti (Streptococcus), 663, 700 Paenibacillus glucanolyticus, 27, 271, 286 813, 817 orisuis (Streptococcus), 711 Paenibacillus glycanilyticus, 271, 278, 286 noxia (Selenomonas), 1078, 1107, 1111 Ornithinibacillus, 20, 71 Paenibacillus gordonae, 294 nucleatum (Fusobacterium), 688, 904, 1068 oroticum (Clostridium), 779, 792, 795, 868 Paenibacillus graminis, 286 Oscillospira, 6, 10, 922, 1016, 1022, 1023, 1031 Paenibacillus granivorans, 286 obeum (Ruminococcus), 1018 Oscillospira guilliermondii, 922, 1023, Paenibacillus hodogayensis, 287 oceani (Thermosediminibacter), 1287, 1031, 1032 Paenibacillus hongkongensis, 317 1288, 1289 oshimensis (Bacillus), 126 Paenibacillus humicus, 295 oceanicum (Clostridium), 794 otitis (Alloiococcus), 543, 559, 560, 562, 563, Paenibacillus illinoisensis, 287, 291 Oceanobacillus, 4, 20, 71, 175–177, 181, 566, 568, 573, 582 Paenibacillus jamilae, 287 184, 200 ovalis (Quinella), 1060, 1073, 1104 Paenibacillus kobensis, 278, 287, 290 Oceanobacillus chironomi, 177, 183 ovata (Sporomusa), 1115 Paenibacillus koleovorans, 287 Oceanobacillus iheyensis, 176, 181–183, 184 ovis (Helcococcus), 1133, 1134, 1135 Paenibacillus koreensis, 278, 287 Oceanobacillus oncorhynchi, 177, 181–183, ovis (Streptococcus), 678, 698, 701 Paenibacillus kribbensis, 288, 1145 184, 200 owensensis (Caldicellulosiruptor), Paenibacillus lactis, 288 Oceanobacillus oncorhynchi subsp. 1275–1277, 1279 Paenibacillus larvae, 70, 271, 273, 288, incaldanensis, 181–183, 184 oxalaticus (Ammoniphilus), 296, 297 310, 609 Oceanobacillus oncorhynchi subsp. oxalicum (Clostridium), 320 Paenibacillus larvae subsp. larvae, 273, 288 oncorhynchi, 181–183, 184 oxalicus (Oxalophagus), 297, 320 Paenibacillus larvae subsp. pulvifaciens, 121, Oceanobacillus picturae, 177, 181–183, oxalivorans (Ammoniphilus), 297 271, 273, 288 184, 200 Oxalobacter formigenes, 1068 Paenibacillus lautus, 27, 96, 272, 288 Oceanobacillus profundus, 177, 183 Oxalophagus, 4, 269, 297, 320, 454 Paenibacillus lentimorbus, 271, 273, 289, 292 octavius (Anaerococcus), 1131 Oxalophagus oxalicus, 297, 320 Paenibacillus macerans, 48, 65, 70, 271, 273, octavius (Peptostreptococcus), 1008, 1131 oxidoreducens (Eubacterium), 868, 883, 954, 289, 962 odorifer (Paenibacillus), 290 955, 959 Paenibacillus macquariensis, 271, 289 odorimutans (Anaerovorax), 1156, 1157 Oxobacter, 6, 738, 842 Paenibacillus massiliensis, 289 odysseyi (Bacillus), 57, 111 Oxobacter pfennigii, 738, 843, 912 Paenibacillus mendelii, 289, 292 oeni (Leuconostoc), 636, 642 oxydans (Brevibacterium), 571 Paenibacillus motobuensis, 290 oeni (Oenococcus), 475, 624, 625, 629, Paenibacillus naphthalenovorans, 271, 636–641, 642, 646 pabuli (Bacillus), 62, 70, 290 278, 290 Oenococcus, 6, 512, 514, 624, 629, 635, pabuli (Paenibacillus), 96, 290 Paenibacillus nematophilus, 290 643, 646 pacificum (Carboxydibrachium), 1261 Paenibacillus odorifer, 290 Oenococcus kitaharae, 637–641, 642 PAENIBACILLACEAE, 4, 20, 269, 454 Paenibacillus pabuli, 96, 290 Oenococcus oeni, 475, 624, 625, 629, Paenibacillus, 4, 24, 27, 29, 33–35, 42, 48, 49, Paenibacillus panacisoli, 291 636–641, 642, 646 61, 62, 70, 71, 96, 122, 269, 271, 301, 310, Paenibacillus pasadenensis, 291 okeanokoites (Flavobacterium), 374, 376 312, 317, 319, 321, 454, 1161 Paenibacillus peoriae, 291 okeanokoites (Planococcus), 349, 350, 376 Paenibacillus agarexedens, 121 Paenibacillus phyllosphaerae, 290, 291 okeanokoites (Planomicrobium), 373, 374, 376 Paenibacillus agaridevorans, 279 Paenibacillus polymyxa, 39, 70, 269, 271, 273, okhensis (Bacillus), 126 Paenibacillus alginolyticus, 269, 278, 279 278, 279, 319 okuhidensis (Bacillus), 33, 34, 48, 57, 78, 112 Paenibacillus alkaliterrae, 280 Paenibacillus popilliae, 4, 42, 46, 271, 273, olearium (Sporobacterium), 952, 959, 960, Paenibacillus alvei, 271, 280 289, 292 961, 962 Paenibacillus amylolyticus, 96, 280, 291 Paenibacillus provencensis, 295 oleronius (Bacillus), 48, 49, 57, 112, 312 Paenibacillus anaericanus, 280 Paenibacillus pulvifaciens, 310 oligofermentans (Streptococcus), 660, 676, Paenibacillus antarcticus, 280 Paenibacillus rhizosphaerae, 292 677, 699 Paenibacillus apiarius, 121, 269, 281 Paenibacillus sabinae, 295 1442 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA

Paenibacillus sanguinis, 292 parvula (Veillonella), 1059, 1062, 1063, 1064, Pediococcus parvulus, 513, 514, 516–518, Paenibacillus sepulcri, 292 1071, 1088, 1094 519, 611, 613 Paenibacillus soli, 295 parvula subsp. atypica (Veillonella), 1064 Pediococcus pentosaceus, 513–518, 519, 520, Paenibacillus stellifer, 292 parvula subsp. parvula (Veillonella), 1064 611, 613 Paenibacillus taiwanensis, 295 parvula subsp. rodentium (Veillonella), 1065 Pediococcus stilesii, 513, 514, 516, 519 Paenibacillus terrae, 293 parvulus (Pediococcus), 513, 514, 516–518, Pediococcus urinaeequi, 513, 514, 534, Paenibacillus terrigena, 295 519, 611, 613 611, 613 Paenibacillus thiaminolyticus, 42, 121, 293 parvulus (Peptostreptococcus), 1008 Pelagibacillus, 20, 71 Paenibacillus timonensis, 293 parvulus (Streptococcus), 661 Pelobacter acidigallici, 959 Paenibacillus turicensis, 293 pasadenensis (Paenibacillus), 291 Pelobacter massiliensis, 959 Paenibacillus urinalis, 295 pascui (Clostridium), 749, 789, 790, 797, 798, Pelosinus, 1059, 1066 Paenibacillus validus, 70, 96, 271, 293 820, 910, 1166, 1169 Pelosinus fermentans, 1060 Paenibacillus woosongensis, 295 pasteuri (Staphylococcus), 398, 412 Pelospora, 10, 16, 1044, 1051 Paenibacillus wynnii, 294 Pasteuria, 3, 4, 328 Pelospora glutarica, 1045, 1047, 1051, 1056 Paenibacillus xinjiangensis, 294 Pasteuria nishizawae, 329, 330, 332, 336, 337, Pelotomaculum, 9, 16, 969, 970, 972, 973, 996 Paenibacillus xylanilyticus, 291, 294 341, 345 Pelotomaculum isophthalicicum, 973, Paenibacillus zanthoxyli, 295 Pasteuria penetrans, 329–335, 340, 341, 996, 997 palaticanis (Gemella), 456, 457, 459 343–345 Pelotomaculum propionicicum, 973, 996, 998 pallens (Enterococcus), 596, 605 Pasteuria ramosa, 328–334, 336, 337, 338, Pelotomaculum schinkii, 972, 973, 996, 998 pallidus (Bacillus), 4, 152, 153, 156 341–343 Pelotomaculum terephthalicicum, 973, pallidus (Geobacillus), 145–147, 153, 156 Pasteuria thornei, 329, 332, 335, 338, 340, 996, 998 paludosum (Acetobacterium), 891–893, 895 341, 343–345 Pelotomaculum thermopropionicum, 970, palustris (Rhodopseudomonas), 1034 Pasteuria usgae (Candidatus), 329, 330, 335, 973, 996, 997, 1001 palustris (Ruminococcus), 586, 588, 1016 338, 340, 345 penetrans (Pasteuria), 329–335, 340, 341, palustris (Trichococcus), 585–587, 588 PASTEURIACEAE, 3, 4, 20, 328 343–345 panacisoli (Paenibacillus), 291 pasteurianum (Clostridium), 740, 750, pentosaceus (Pediococcus), 513–518, 519, panaciterrae (Bacillus), 126 752, 797 520, 611, 613 panis (Lactobacillus), 474, 504 pasteurianus (Streptococcus), 678, 692, 702 pentosovorans (Anaerofilum), 962, 1022, 1023 pantheris (Lactobacillus), 504, 511 pasteurii (Bacillus), 24, 33, 69, 70, 361, 378, pentosus (Lactobacillus), 471, 472, 480, 482, pantothenticus (Bacillus), 70, 194, 196, 380, 462 505, 506, 511 200, 203 pasteurii (Lactosphaera), 565, 586, 588 peoriae (Bacillus), 70, 291 pantothenticus (Virgibacillus), 38, 166, 167, pasteurii (Ruminococcus), 586, 588, 1016 peoriae (Paenibacillus), 291 176, 183, 187, 195–197, 200 pasteurii (Sporosarcina), 361, 377, 378, 380 peptidivorans (Clostridium), 789, 790, 797, Papillibacter, 10, 11, 1016, 1022, 1033 pasteurii (Trichococcus), 585–587, 588 798, 820 Papillibacter cinnamivorans, 1032, 1033, 1034 patagoniensis (Bacillus), 126–127 peptidovorans (Dethiosulfovibrio), 1166, papyrosolvens (Clostridium), 10, 765, 766, patagoniensis (Trichococcus), 585–587, 588 1167, 1169, 1174, 1175, 1177 782, 785, 795, 821 Paucisalibacillus, 4, 20, 71 PEPTOCOCCACEAE, 9, 16, 736, 960, 969, para-adiacens (Abiotrophia), 575, 576, 578 paucivorans (Aminomonas), 1150, 1166– 971–1003 parabrevis (Bacillus), 70, 300, 312, 315 1169, 1170 Peptococcus, 9, 16, 969, 971, 982, 1029 parabrevis (Brevibacillus), 308, 312, 315 paucivorans (Dolosicoccus), 539, 540, 545 Peptococcus asaccharolyticus, 1136 parabuchneri (Lactobacillus), 471, 474, paucivorans (Fusibacter), 1137, 1151, Peptococcus indolicus, 971, 1136 475, 504 1152, 1153 Peptococcus magnus, 971, 1132, 1166 paracasei (Lactobacillus), 469, 474–477, 479, paucivorans (Megasphaera), 1083, Peptococcus niger, 971, 979, 982, 1030 494, 504 1085–1089, 1090 Peptococcus prevotii, 971, 1130 paracasei subsp. paracasei (Lactobacillus), 504 paucivorans (Megasphaera), 1083, Peptococcus saccharolyticus, 413, 414, 971 paracasei subsp. tolerans (Lactobacillus), 504 1085–1089, 1090 Peptoniphilus, 8, 11, 17, 969, 971, 1008, 1010, paracollinoides (Lactobacillus), 475, 504 paucivorans (Parasporobacterium), 952, 1011, 1136 paradoxum (Clostridium), 796, 823, 1056 959–961 Peptoniphilus asaccharolyticus, 1009, 1011, parakefiri (Lactobacillus), 476, 505 paucivorans (Sporomusa), 1066, 1094, 1030, 1136, 1136–1138 Paralactobacillus, 4, 465, 480, 481, 511, 1113, 1115 Peptoniphilus harei, 1009, 1011, 1030, 1136 555, 629 paucivorans (Zymophilus), 1094, 1095, Peptoniphilus indolicus, 1009, 1011, Paralactobacillus selangorensis, 511, 513 1119, 1120 1030, 1136 paralimentarius (Lactobacillus), 474, 480, 505 Pectinatus, 11, 939, 1059, 1073, 1075–1077, Peptoniphilus ivorii, 1011, 1030, 1137 Paraliobacillus, 4, 71, 132, 171, 181, 183, 1085, 1086, 1088, 1089, 1094, 1105, Peptoniphilus lacrimalis, 1009, 1011, 185, 584 1109, 1119 1030, 1137 Paraliobacillus ryukyuensis, 163, 173, Pectinatus cerevisiiphilus, 1094–1098, peptonophila (Seinonella), 434, 447, 448 185–188, 189, 583 1099, 1119 peptonophilus (Thermoactinomyces), 434, paramesenteroides (Leuconostoc), 624, 629, Pectinatus frisingensis, 1094–1098, 1099, 1119 437, 438, 440, 442, 447, 448 630, 636, 640, 643, 647, 648 Pectinatus haikarae, 1094, 1096–1098, 1099 PEPTOSTREPTOCOCCACEAE, 6, 8, 10, 11, paramesenteroides (Weissella), 624, 627, 629, pectinoschiza (Lachnospira), 868, 921, 922, 16, 736, 1008, 1008–1015, 1029, 1130, 636, 637, 643, 645–647, 648 923, 934, 962 1134, 1137–1139, 1141, 1143, 1150 paraperfringens (Clostridium), 756 Pediococcus, 5, 169, 261, 465, 481–483, 511, Peptostreptococcus, 8, 10, 457, 971, paraplantarum (Lactobacillus), 472, 475, 480, 512, 513, 534, 611, 615, 629 1008, 1135 482, 505, 506 Pediococcus acidilactici, 511, 513–517, 518, Peptostreptococcus anaerobius, 870, 876, 950, paraputrificum (Clostridium), 756, 766, 796, 519, 520, 611, 613, 633 1008, 1011, 1029, 1030, 1137, 1138, 1166 797, 827 Pediococcus cellicola, 513, 514, 516, 518 Peptostreptococcus asaccharolyticus, 899, parasanguinis (Streptococcus), 661, 676, 677, Pediococcus claussenii, 513, 514, 516, 518, 1008, 1068, 1136 681, 701 520, 613 Peptostreptococcus barnesae, 1008, 1132 Parasporobacterium, 8, 921, 926, 944, 952 Pediococcus damnosus, 513, 514, 516, 517, Peptostreptococcus harei, 1008, 1136 Parasporobacterium paucivorans, 952, 518, 519, 611, 613 Peptostreptococcus heliotrinreducens, 1008 959–961 Pediococcus dextrinicus, 513–516, 518, 519, Peptostreptococcus hydrogenalis, 1008, 1130 parauberis (Streptococcus), 662, 701, 709 611, 613 Peptostreptococcus indolicus, 1008, 1136 Parvimonas, 11, 969, 1133, 1135, 1143 Pediococcus halophilus, 514, 611, 614 Peptostreptococcus ivorii, 1008, 1137 Parvimonas micra, 1008, 1063, 1135, 1137 Pediococcus inopinatus, 513–518, 519, 613 Peptostreptococcus lacrimalis, 1008, 1137 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1443

Peptostreptococcus lactolyticus, 1008, 1130 Planomicrobium alkanoclasticum, prausnitzii (Fusobacterium), 1019, 1022, Peptostreptococcus magnus, 1008, 1132 373–375, 383 1026, 1027 Peptostreptococcus micros, 1008, 1135 Planomicrobium chinense, 374, 375, 383 Prevotella, 939, 1091, 1093, 1129, 1149 Peptostreptococcus octavius, 1008, 1131 Planomicrobium koreense, 373, 374, Prevotella dentalis, 1093, 1129 Peptostreptococcus parvulus, 1008 375, 385 Prevotella ruminicola, 921, 929, Peptostreptococcus prevotii, 1008 Planomicrobium mcmeekinii, 373, 374, 376 prevotii (Anaerococcus), 1130, 1137 Peptostreptococcus productus, 1008, Planomicrobium okeanokoites, 373, 374, 376 prevotii (Peptococcus), 971, 1130 1016, 1018 Planomicrobium psychrophilum, 373, 374, prevotii (Peptostreptococcus), 1008 Peptostreptococcus stomatis, 1009 376, 383 productus (Peptostreptococcus), 1008, Peptostreptococcus tetradius, 1008, 1131 plantarum (Lactobacillus), 260, 286, 287, 1016, 1018 Peptostreptococcus vaginalis, 899, 1131 469–477, 479–482, 492, 505, 506, 511, productus (Ruminococcus), 769, 962, 1018 perenne (Clostridium), 756 512, 516 profundi (Halobacillus), 168 perfringens (Clostridium), 44, 759–761, 794, plantarum (Lactococcus), 711, 712, 715, profundus (Oceanobacillus), 177, 183 799, 810, 813, 815 719, 721 proomii (Virgibacillus), 167, 176, 183, 187, periodontii (Centipeda), 1077, 1078 plantarum (Streptococcus), 721 194–196, 200, 203 perolens (Lactobacillus), 505 plantarum subsp. argentoratensis Propionibacter pelophilus, 1155 peroris (Streptococcus), 676, 677, 702 (Lactobacillus), 506 PROPIONIBACTERIACEAE, 893 Petrotoga, 850 plantarum subsp. plantarum Propionibacterium, 243, 527, 865, 878, 974, pfennigii (Clostridium), 843 (Lactobacillus), 506 1100, 1149 pfennigii (Oxobacter), 738, 843, 912 platensis (Coprothermobacter), 1271, Propionibacterium acnes, 264, 950 phaeum (Thermacetogenium), 990, 1250, 1272, 1273 Propionibacterium cyclohexanicum, 231, 1253–1255, 1256 plautii (Eubacterium), 795, 869, 883 243, 1182, 1187 Phascolarctobacterium, 11, 1059, 1100, 1116 pleistocenium (Carnobacterium), 549, 550, propionica (Smithella), 1045, 1058 Phascolarctobacterium faecium, 1060, 1100, 552–555, 557 propionicicum (Pelotomaculum), 973, 1100, 1116 pleomorphus (Streptococcus), 12, 661, 710, 996, 998 phenolicus (Cryptanaerobacter), 972, 973, 869, 1299 propionicifaciens (Dialister), 1063, 1069, 974, 996 plexicaudatum (Eubacterium), 868, 884 1080, 1081, 1082 phocae (Atopobacter), 563, 564, 565, 576 pluranimalium (Streptococcus), 660, 678, propionicum (Clostridium), 782, 786, phocae (Streptococcus), 662, 702 684, 703 792, 803 phoeniculicola (Enterococcus), 596, 606 plutonius (Melissococcus), 607–609, 610 Propionigenium, 1051 phyllosphaerae (Paenibacillus), 290, 291 pneumoniae (Klebsiella), 1095 Propionigenium modestum, 1051 phytofermentans (Clostridium), 801 pneumoniae (Streptococcus), 26, 182, Propionispira, 11, 1059, 1102, 1103, 1120 picturae (Oceanobacillus), 177, 181–183, 655–660, 662, 676, 677, 681, 685, 703, Propionispira arboris, 979, 1060, 1079, 1102, 184, 200 711, 723, 930 1103, 1119, 1127, 1129 picturae (Virgibacillus), 177, 181, 183, pneumosintes (Bacterium), 1080, 1082 Propionispora, 11, 1059, 1066, 1079, 184, 200 pneumosintes (Dialister), 1069, 1072, 1080, 1103, 1104 piezotolerans (Marinilactibacillus), 1081, 1082, 1083 Propionispora hippei, 1104, 1118 582, 584 pocheonensis (Bacillus), 127 Propionispora vibrioides, 1060, 1103, pigrum (Dolosigranulum), 539, 543, 547, polyendosporus (Anaerobacter), 736, 784, 1104, 1118 560, 562, 566, 568, 572, 573, 574, 583 802, 830, 831 PROTEOBACTERIA, 330, 439, 473, 954, Pilibacter, 5, 512 polymyxa (Bacillus), 31, 42, 69, 70, 269, 279 1106, 1107, 1211 piliforme (Clostridium), 770 polymyxa (Paenibacillus), 39, 70, 269, 271, proteoclasticum (Clostridium), 804, 934, 962 pinnipedialis (Jeotgalicoccus), 422 273, 278, 279, 319 proteoclasticus (Caloramator), 834, 836, Pirellula staleyi, 328 polysaccharolyticum (Clostridium), 781, 838, 1166 Piscibacillus, 20, 71 802, 924 proteolyticum (Clostridium), 782, 788, 804 piscicola (Carnobacterium), 551–553, 555, polysaccharolyticum (Fusobacterium), proteolyticus (Coprothermobacter), 1271, 556, 569, 617 802, 863 1272, 1274 piscicola (Lactobacillus), 550–552, 556 polysaccharolyticum proteolyticus (Thermobacteroides), piscifermentans (Staphylococcus), 399, (Thermoanaerobacterium), 1271, 1272 405, 413 1281–1283, 1285 protophormiae (Brevibacterium), 571 piscium (Lactococcus), 711, 712, 715, 716, polysaccharolyticus (Caldanaerobius), 1283, provencensis (Paenibacillus), 295 719, 721, 722 1285 psammolithicum (Acetobacterium), 895 plakortidis (Bacillus), 127 pomorum (Alicyclobacillus), 230, 231, 237, pseudalcaliphilus (Bacillus), 26, 112 Planctomyces, 337 238, 241 pseudethanolicus (Thermoanaerobacter), Planifilum, 5, 434, 441, 446, 447 Pontibacillus, 3, 4, 22, 71, 181, 183, 189, 215 1229–1231, 1233, 1236 Planifilum fimeticola, 434, 446, 447 Pontibacillus chungwhensis, 189, 190, 216 pseudintermedius (Staphylococcus), 420 Planifilum fulgidum, 434, 447 Pontibacillus marinus, 190, 215 pseudoavium (Enterococcus), 594, 600, 606 PLANOCOCCACEAE, 3, 4, 20, 348 pontis (Lactobacillus), 469, 471, 474, 506 Pseudobutyrivibrio, 8, 921, 926, 931, 932, 934, Planococcus, 3, 4, 179, 348, 359, 361, 365, popilliae (Bacillus), 33, 42, 70, 292 944, 947, 952 373, 374, 462 popilliae (Paenibacillus), 4, 42, 46, 271, 273, Pseudobutyrivibrio ruminis, 868, 922, 928, Planococcus alkanoclasticus, 374, 375 289, 292 932, 934–937, 952, 953, 955, 962 Planococcus antarcticus, 348, 350, 353 populeti (Clostridium), 754, 781, 785, 803 Pseudobutyrivibrio xylanivorans, 860, Planococcus citreus, 348–350, 353, 361, 367 porcina (Hespellia), 792, 944, 945 934–936, 953, 962 Planococcus columbae, 350, 353 porcinus (Enterococcus), 600, 607 pseudofirmus (Bacillus), 26, 33, 48, 57, Planococcus halophilus, 178–180, 349 porcinus (Streptococcus), 662, 705 78, 113 Planococcus kocurii, 348–350, 353 Porphyromonas, 946, 1091, 1149 pseudomesenteroides (Leuconostoc), 627, Planococcus maitriensis, 348, 350, 354 Porphyromonas cangingivalis, 641 629, 630, 635 Planococcus maritimus, 348, 350, 354 praeacuta (Tissierella), 1137, 1138, 1142, Pseudomonas, 473, 717 Planococcus mcmeekinii, 349, 350, 376 1144, 1146 Pseudomonas fluorescens, 551 Planococcus okeanokoites, 349, 350, 376 praeacutus (Bacteroides), 1146 pseudomycoides (Bacillus), 50, 57, 78, 96, Planococcus psychrophilus, 367, 376 praevalens (Halanaerobium), 1191–1193, 110, 113, 119 Planococcus rifietoensis, 350, 348 1195–1197, 1199 pseudopneumoniae (Streptococcus), 711 Planococcus stackebrandtii, 348, 350, 354 prausnitzii (Faecalibacterium), 1022, 1024, pseudoporcinus (Streptococcus), 711 Planomicrobium, 3, 4, 348, 349, 373, 385 1026, 1027, 1038, 1039 Pseudoramibacter, 7, 865, 897, 902 1444 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA

Pseudoramibacter alactolyticus, 897, 900, reuszeri (Bacillus), 70, 300, 312, 316 saalensis (Sedimentibacter), 850, 1140, 902–904, 905 reuszeri (Brevibacillus), 308, 312, 316 1141, 1144 psittaci (Lactobacillus), 506, 507 reuteri (Lactobacillus), 469–471, 473, 474, sabinae (Paenibacillus), 295 psychrodurans (Bacillus), 24, 33, 34, 78, 113, 365 477, 479, 481, 482, 493, 495, 497, 498, saburreum (Eubacterium), 868, 886, 937, 945 psychrophila (Sporosarcina), 54, 361, 377, 500, 503, 504, 506, 507, 510 sacchari (Alicyclobacillus), 230, 238, 241 378, 380 rhamnosus (Lactobacillus), 469, 470, 474, sacchari (Laceyella), 434–436, 444 psychrophilum (Clostridium), 786, 804 476, 477, 479, 507 sacchari (Thermoactinomyces), 434–442, 444 psychrophilum (Planomicrobium), 373, 374, rhizae (Sporomusa), 1113, 1114, 1115 saccharobutylicum (Clostridium), 741, 758, 376, 383 rhizosphaerae (Paenibacillus), 292 772, 801, 805, 808, 810, 827 psychrophilus (Bacillus), 24, 54, 70, 359, 361, Rhodococcus equi, 246 Saccharococcus, 4, 153, 154, 190 378, 380 Rhodopseudomonas, 1034 Saccharococcus caldoxylosilyticus, 153, 154 psychrophilus (Jeotgalicoccus), 422, 962 Rhodopseudomonas palustris, 1034 Saccharococcus thermophilus, 190, 191, 192 psychrophilus (Planococcus), 367, 376 rhusiopathiae (Bacterium), 1305 saccharofermentans (Alkalibacter), 896, 897, psychrosaccharolyticus (Bacillus), 34, 57, rhusiopathiae (Erysipelothrix), 252, 899, 901, 903, 1161 113, 121 1299–1304, 1305, 1309, 1310, 1312 saccharogumia (Clostridium), 770, 809, 816 psychrotolerans (Alkalibacterium), 558, 582 rifietoensis (Planococcus), 350, 348 saccharolytica (Soehngenia), 850, 861, psychrotolerans (Bacillus), 24, 33, 34, 78, 113 rodentium (Veillonella), 1062, 1065 1137–1139, 1141–1143, 1144, 1145, 1149 psychrotolerans (Marinilactibacillus), 169, rogosae (Lactobacillus), 512 saccharolyticum (Clostridium), 751, 753, 755, 171–173, 188, 558, 560, 580, 582–584 rogosae (Veillonella), 1065 765, 780, 783, 791, 809, 815 Pullulanibacillus, 5, 71 Roseburia, 16, 921, 922, 926, 932, 941, 944, saccharolyticum (Halanaerobium), 1195, Pullulanibacillus naganoensis, 110 947, 953, 954, 956 1197, 1200 pulvereri (Staphylococcus), 393, 413, 419 Roseburia cecicola, 868, 934, 954, 955 saccharolyticum (Thermoanaerobacterium), pulvifaciens (Bacillus), 70, 308, 310 Roseburia intestinalis, 868, 954, 955, 956, 962 1280–1282, 1285, 1286 pulvifaciens (Paenibacillus), 310 roseum (Clostridium), 775, 808 saccharolyticum subsp. saccharolyticum pumilum (Mogibacterium), 1157, 1158, 1159 roseus (Salinicoccus), 176, 421, 426, 427 (Halanaerobium), 1195, 1197, 1200 pumilus (Bacillus), 21, 26, 27, 33, 34, 36, 42, rossiae (Lactobacillus), 469, 479, 482, 507 saccharolyticum subsp. senegalense 45, 46, 48, 49, 57, 65, 69–71, 78, 108, 114, ruckeri (Yersinia), 553 (Halanaerobium), 1200 119, 123, 129 ruminantium (Eubacterium), 868, 886, 931 saccharolyticus (Caldicellulosiruptor), puniceum (Clostridium), 741, 758, 767, 772, ruminantium (Selenomonas), 929, 931, 1069, 1275–1277, 1278 775, 805, 806, 809, 810 1075, 1091, 1093, 1100, 1101, 1104, saccharolyticus (Enterococcus), 606 purinilyticum (Clostridium), 805, 839, 850, 1106–1109, 1111 saccharolyticus (Haloincola), 1197 867, 1144 ruminantium subsp. bryanti saccharolyticus (Peptococcus), 413, 414, 971 pushchinoensis (Anoxybacillus), 134–136, 139 (Selenomonas), 1112 saccharolyticus (Staphylococcus), 392, 413 pusillum (Brevibacterium), 571 ruminantium subsp. lactilytica saccharolyticus (Streptococcus), 606 pusillum (Curtobacterium), 231, 243, 1182 (Selenomonas), 1108, 1109, 1111, 1112 saccharolyticus subsp. saccharolyticus putei (Desulfotomaculum), 994 ruminantium subsp. palpitans (Haloincola), 1200 putida (Laceyella), 434, 444, 445 (Selenomonas), 1112 saccharolyticus subsp. senegalensis putidus (Thermoactinomyces), 434, 436–440, ruminantium subsp. ruminantium (Haloincola), 1200 442, 445 (Selenomonas), 1075, 1111 saccharominimus (Enterococcus), 600 putrefaciens (Clostridium), 753, 802, 806, 831 ruminis (Acetitomaculum), 923, 924, 962 Saccharomonospora, 442 putrificum (Clostridium), 797 ruminis (Lactobacillus), 477, 479, 507 Saccharomonospora viridis, 441 pycnus (Bacillus), 33, 34, 57, 78, 111, 114, ruminis (Succiniclasticum), 1100, 1106, saccharoperbutylacetonicum (Clostridium), 117, 365 1116, 1117 741, 758, 767, 805, 809, 827 pyogenes (Streptococcus), 655–660, 662, 681, Ruminobacter, 939 saccharophilum (Halonatronum), 1215 685, 687, 690, 722 RUMINOCOCCACEAE, 6, 10–12, 16, 736, saerimneri (Lactobacillus), 507 pyogenica (Helcococcus), 1009 910, 912, 922, 1016, 1020, 1022–1024, safensis (Bacillus), 127 pyrophilus (Aquifex), 1273 1026, 1029, 1032, 1060 sakei (Lactobacillus), 469, 471, 473–477, 480, pyruvativorans (Eubacterium), 884 Ruminococcus, 10, 16, 586, 588, 661, 769, 481, 495, 507, 630 869, 910, 926, 932, 937, 939–941, 944, sakei subsp. carnosus (Lactobacillus), 495, 508 qingdaonensis (Bacillus), 127 962, 1008, 1016, 1018, 1019, 1022, 1024, sakei subsp. sakei (Lactobacillus), 508 Quadricoccus, 1015, 1149 1029, 1039, 1040, 1112 salarius (Bacillus), 127 Quatrionicoccus australiensis, 1297 Ruminococcus albus, 10, 1016, 1025, 1040 salarius (Lentibacillus), 175, 176, 177, 200 quercicolum (Clostridium), 1079, 1094 Ruminococcus bromii, 1016, 1025, 1040 salexigens (Bacillus), 70, 196, 203 Quinella, 11, 1059, 1060, 1073, 1104 Ruminococcus callidus, 1016, 1025, 1040 salexigens (Salibacillus), 176, 183, 200, 203 Quinella ovalis, 1060, 1073, 1104 Ruminococcus flavefaciens, 661, 1016, 1022 salexigens (Virgibacillus), 167, 176, 183, 194, quinii (Clostridium), 764, 773, 806, 807, 811 Ruminococcus gnavus, 9, 792, 795, 812, 195, 203 quisquiliarum (Cerasibacillus), 141, 142 962, 1018 Salibacillus, 4, 24, 47, 61, 70, 176, 183, 196, Ruminococcus hansenii, 661, 1018 200 raffinolactis (Lactococcus), 711, 712, 715, Ruminococcus hydrogenotrophicus, 962, 1018 Salibacillus marismortui, 176, 183, 200, 202 716, 719, 721, 722 Ruminococcus lactaris, 1018 Salibacillus salexigens, 176, 183, 200, 203 raffinosivorans (Zymophilus), 1094, 1095, Ruminococcus luti, 924, 1018 salicampi (Lentibacillus), 175, 176, 177, 200 1119, 1120 Ruminococcus obeum, 1018 salilacus (Alkalibacillus), 129 raffinosus (Enterococcus), 594, 596, 600, 606 Ruminococcus palustris, 586, 588, 1016 Salimicrobium, 20 ramosa (Pasteuria), 328–334, 336, 337, 338, Ruminococcus pasteurii, 586, 588, 1016 Salimicrobium halophilum, 71 341–343 Ruminococcus productus, 769, 962, 1018 salinaria (Orenia), 1217–1219, 1220 ramosum (Clostridium), 770, 807, 809, 816, Ruminococcus schinkii, 959, 960, 962, 1018 salinarius (Halanaerobacter), 1207, 1212, 1299, 1310 Ruminococcus torques, 779, 795, 1018 1213, 1214 ramulus (Eubacterium), 868, 884, 955, 958, 1034 ruoffiae (Ignavigranum), 539, 541–547, Salinibacillus, 71, 181, 183 ratti (Enterococcus), 597, 606 567, 573 Salinicoccus, 5, 179, 392, 421, 426 ratti (Streptococcus), 655, 661, 662, 663, 705 rupiensis (Anoxybacillus), 134–136, 141 Salinicoccus alkaliphilus, 427 ratti (Veillonella), 1061–1063, 1065 ruris (Bacillus), 127 Salinicoccus hispanicus, 179, 421, 426, 427, 428 rectale (Eubacterium), 868, 885, 934, 947, russensis (Dethiosulfovibrio), 1175, 1176 Salinicoccus jeotgali, 429 953, 954, 958 ryukyuensis (Paraliobacillus), 163, 173, Salinicoccus luteus, 429 rectum (Clostridium), 807 185–188, 189, 583 Salinicoccus roseus, 176, 421, 426, 427 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1445

Salinicoccus salsiraiae, 429 sciuri subsp. sciuri (Staphylococcus), 411, simplex (Bacillus), 50, 58, 109, 115, 121, salinus (Halobacillus), 167 416, 417 122, 126 saliphilus (Bacillus), 127 Sedimentibacter, 11, 1137, 1143, 1144 simulans (Staphylococcus), 392, 397, 399, 418 Salirhabdus, 20 Sedimentibacter hydroxybenzoicus, 850, sinensis (Streptococcus), 676, 677, 700, 707 salivarius (Lactobacillus), 474, 476, 477, 1137, 1140, 1141, 1144 Sinococcus, 3, 4 481–483, 491–493, 496, 502, 507, 508 Sedimentibacter saalensis, 850, 1140, sinus (Oribacterium), 950, 951 salivarius (Streptococcus), 655, 659, 660, 1141, 1144 siraeum (Eubacterium), 10, 869, 887, 1019, 676, 706 seeligeri (Listeria), 245, 246, 248, 250, 1022, 1024, 1039, 1040 salivarius subsp. salicinius (Lactobacillus), 508 251–253, 256 siralis (Bacillus), 33, 48, 58, 116 salivarius subsp. salivarius (Lactobacillus), 508 Seinonella, 5, 434, 445, 446, 447 sivashensis (Orenia), 1217–1219, 1220 salivarius subsp. salivarius (Streptococcus), 676 Seinonella peptonophila, 434, 447, 448 Slackia, 867, 1008 salivarius subsp. thermophilus selangorensis (Paralactobacillus), 511, 513 Slackia exigua, 909, 1015, 1158 (Streptococcus), 676 selenatarsenatis (Bacillus), 127 Slackia heliotrinireducens, 909, 1015 Salmonella enteritidis, 1063 Selenihalanaerobacter, 11, 1207, 1221 smaragdinae (Spirochaeta), 1155 salmonicida (Aeromonas), 553 Selenihalanaerobacter shriftii, 1192, 1221 Smithella propionica, 1045, 1058 salmoninarum (Vagococcus), 616, 617 selenitireducens (Bacillus), 33, 35, 48, 58, 68, smithii (Bacillus), 34, 48, 50, 58, 116, 153 salsiraiae (Salinicoccus), 429 78, 115 smithii (Methanobrevibacter), 961 Salsuginibacillus, 20 Selenomonas, 11, 939, 1059, 1066, 1073, sobrinus (Streptococcus), 656, 659, 662, salsuginis (Halanaerobium), 1201 1075–1078, 1081, 1093, 1094, 1098, 663, 707 sanfranciscensis (Lactobacillus), 469, 470, 1103–1105, 1106, 1119, 1177 Soehngenia, 8, 11, 17, 1137, 1138, 1141 474, 475, 479, 508 Selenomonas acidaminovorans, 1166, 1169, Soehngenia saccharolytica, 850, 861, sanguinicola (Aerococcus), 533, 534, 535 1176, 1177 1137–1139, 1141–1142, 1143, sanguinis (Fastidiosipila), 1028, 1029, 1031 Selenomonas artemidis, 1107, 1110 1144–1145, 1149 sanguinis (Gemella), 456–458, 459 Selenomonas dianae, 1078, 1107, 1110 solfataricum (Desulfotomaculum), 995 sanguinis (Globicatella), 539, 544, 545, 546, Selenomonas flueggei, 1078, 1107, 1110 soli (Bacillus), 58, 116 576, 709 Selenomonas infelix, 1078, 1107, 1111 soli (Paenibacillus), 295 sanguinis (Paenibacillus), 292 Selenomonas lacticifex, 1094, 1095, 1111, 1119 soli (Sporosarcina), 377, 378, 380 sanguinis (Streptococcus), 661, 662, 676, 677, Selenomonas lipolytica, 1078, 1106–1109, 1111 soli (Weissella), 643, 645, 647, 649 681, 692, 701, 706 Selenomonas noxia, 1078, 1107, 1111 solitarius (Enterococcus), 600, 611, 612, 616 sanguinis (Turicibacter), 962, 1314, 1315 Selenomonas ruminantium, 929, 931, 1069, solitarius (Tetragenococcus), 600, saperdae (Brevibacterium), 571 1075, 1091, 1093, 1100, 1101, 1104, 611–613, 616 saphenum (Eubacterium), 887, 1154, 1157, 1106–1109, 1111 Solobacterium, 12, 17, 1299, 1307, 1158 Selenomonas ruminantium subsp. 1311, 1312 sapovorans (Syntrophomonas), 1046, 1048, bryanti, 1112 Solobacterium moorei, 871, 1304, 1308, 1309, 1050 Selenomonas ruminantium subsp. lactilytica, 1311–1314, 1316 saprophyticus (Staphylococcus), 393, 1108, 1109, 1111, 1112 sonorensis (Bacillus), 58, 59, 78, 117, 123 397–399, 406, 414, 418, 419 Selenomonas ruminantium subsp. sordellii (Clostridium), 757, 758, 772, 778, saprophyticus subsp. bovis palpitans, 1112 781, 789, 790, 814, 819, 869 (Staphylococcus), 414 Selenomonas ruminantium subsp. sourekii (Facklamia), 541, 542, 544 saprophyticus subsp. saprophyticus ruminantium, 1075, 1111 sphaericus (Bacillus), 23, 24, 26, 27, 32–36, (Staphylococcus), 414, 415 Selenomonas sputigena, 1078, 38–40, 46–49, 54, 56–58, 65, 66, 69, 70, Sarcina, 6, 377, 378, 517, 737, 843, 869 1106–1109, 1110 78, 101, 103, 111, 114, 115, 117, 121, 126, Sarcina maxima, 837, 843–846, 847 seminis (Allofustis), 559, 560, 566, 568 299, 310, 365, 462 Sarcina ventriculi, 837, 843–846, 847, 1029 sendaiensis (Alicyclobacillus), 230, 238, 241 sphaericus (Lysinibacillus), 117 sardiniense (Clostridium), 750, 771, 810 seohaeanensis (Bacillus), 127 sphaeroides (Sporomusa), 1112, 1114 saromensis (Sporosarcina), 377, 378, 380 septicum (Clostridium), 762, 764, 767, 774, Sphaerotilus natans, 287, 327 sartagoforme (Clostridium), 766, 784, 785, 776, 785, 812, 821 sphenoides (Clostridium), 765, 780, 783, 791, 810, 821 sepulcri (Paenibacillus), 292 814, 990 satelles (Shuttleworthia), 922, 928, 949–951, seregens (Hallella), 1093 spicheri (Lactobacillus), 474, 494, 509 957–959, 962 seriolicida (Enterococcus), 600, 715 Spirillum, 1109 satsumensis (Lactobacillus), 475, 509 Serratia, 324 Spirillum sputigenum, 1106, 1108, 1110 scatologenes (Clostridium), 763, 773, 789, Serratia liquefaciens, 211 spiroforme (Clostridium), 770, 772, 801, 807, 790, 793, 811 shackletonii (Bacillus), 50, 58, 115 809, 815, 1299 schinkii (Pelotomaculum), 972, 973, 996–998 sharpeae (Lactobacillus), 479, 509 Sporacetigenium, 10 schinkii (Ruminococcus), 959, 960, 962, 1018 shiloi (Streptococcus), 696 Sporanaerobacter, 11, 1138, 1143 schirmacherense (Clostridium), 755, 812 Shimazuella, 5, 15, 434, 441, 448 Sporanaerobacter acetigenes, 850, 1143, schlegelii (Bacillus), 4, 21, 33, 34, 48, 57, 60, Shimazuella kribbensis, 434, 448 1144, 1145 78, 114, 148, 153 shizuokensis (Alicyclobacillus), 230, 231, Sporobacter, 6, 10, 959–961, 1016, 1022, schleiferi (Staphylococcus), 396, 398, 411, 238, 242 1031, 1033, 1034 412, 415 shriftii (Selenihalanaerobacter), 1192, 1221 Sporobacter termitidis, 959–961, 1031, 1032, schleiferi subsp. coagulans (Staphylococcus), Shuttleworthia, 8, 921, 926, 944, 951, 1034, 1035, 1036 393, 399, 415 957, 959 Sporobacterium, 8, 921, 926, 932, 941, 944, schleiferi subsp. schleiferi (Staphylococcus), Shuttleworthia satelles, 922, 928, 949–951, 952, 959, 962 415, 416 957–959, 962 Sporobacterium olearium, 952, 959, 960, Schwartzia, 1059, 1075, 1078, 1105, 1106, 1109 sibirica (Kurthia), 367–369, 370 961, 962 Schwartzia succinivorans, 1105, 1106 sibiricum (Anoxynatronum), 831, 832, 833 sporogenes (Caminicella), 763, 780, 840 scindens (Clostridium), 783, 812, 1034 sibiricus (Sulfobacillus), 1182, 1183, 1184 sporogenes (Clostridium), 40, 759, 760, 772, sciuri (Staphylococcus), 392, 393, 397, 399, siderophilus (Thermoanaerobacter), 1225, 795, 813, 816, 866, 972, 973, 1150 411, 416, 419, 422–424 1236, 1237 Sporohalobacter, 11, 1196, 1207, 1208, 1210, sciuri subsp. carnaticus (Staphylococcus), silesiacus (Enterococcus), 600, 606 1216, 1222 399, 416, 418 silvacetica (Sporomusa), 1113, 1115 Sporohalobacter lortetii, 1191, 1192, 1205, sciuri subsp. lentus (Staphylococcus), 411 silvestris (Bacillus), 33, 58, 115, 365 1207, 1219, 1221, 1222 sciuri subsp. rodentium (Staphylococcus), silvisoli (Alkalibacillus), 129 Sporohalobacter marismortui, 1217, 399, 416, 417 simiae (Staphylococcus), 420 1219, 1222 1446 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA

SPOROLACTOBACILLACEAE, 4, 5, 20, Staphylococcus chromogenes, 397, 399, Staphylococcus warneri, 392, 396–398, 419, 420 386, 388 404, 410 Staphylococcus xylosus, 393, 398–399, 406, Sporolactobacillus, 5, 71, 359, 386, 390 Staphylococcus cohnii, 393, 397, 398, 404, 406 407, 418–420 Sporolactobacillus inulinus, 386, 388, 389 Staphylococcus cohnii subsp. cohnii, 404 stearothermophilus (Bacillus), 70, 144, 148, Sporolactobacillus kofuensis, 389 Staphylococcus cohnii subsp. urealyticus, 398, 152–154, 191 Sporolactobacillus lactosus, 389 404, 405 stearothermophilus (Geobacillus), 39, 40, Sporolactobacillus laevolacticus, 386, 388, 390 Staphylococcus condimenti, 399, 405 144–148, 153, 154, 191, 1188, 1189 Sporolactobacillus nakayamae, 390 Staphylococcus delphini, 393, 399, 405, 412 stellifer (Paenibacillus), 292 Sporolactobacillus nakayamae subsp. Staphylococcus epidermidis, 392, 396–400, stercoraria (Vitreoscilla), 360, 361 nakayamae, 390 405, 410, 414, 537, 574, 578 stercorarium (Clostridium), 10, 817, 836, Sporolactobacillus nakayamae subsp. Staphylococcus equorum, 398, 399, 406, 1275, 1277 racemicus, 390 418, 419 stercorarium subsp. leptospartum Sporolactobacillus terrae, 390 Staphylococcus equorum subsp. equorum, (Clostridium), 818 Sporomusa, 11, 939, 1059, 1066, 1071, 1072, 406, 407 stercorarium subsp. stercorarium 1081, 1083, 1088, 1090, 1091, 1093, 1094, Staphylococcus equorum subsp. linens, (Clostridium), 818 1101, 1103, 1112, 1119, 1193, 1249 399, 406 stercorarium subsp. thermolacticum Sporomusa acidovorans, 1114 Staphylococcus felis, 397, 399, 407, 411 (Clostridium), 818 Sporomusa aerivorans, 1114 Staphylococcus fleurettii, 399, 407 stercoricanis (Allobaculum), 1306, 1307 Sporomusa malonica, 1113, 1114 Staphylococcus gallinarum, 398, 406, 407, 419 stercorihominis (Anaerofustis), 897, 899, 900 Sporomusa ovata, 1115 Staphylococcus haemolyticus, 392, stercorisuis (Hespellia), 944, 945 Sporomusa paucivorans, 1066, 1094, 396–399, 407 sticklandii (Clostridium), 818, 931, 1166, 1169 1113, 1115 Staphylococcus hominis, 392, 396–398, stilesii (Pediococcus), 513, 514, 516, 519 Sporomusa rhizae, 1113, 1114, 1115 408, 409 stomatis (Peptostreptococcus), 1009 Sporomusa silvacetica, 1113, 1115 Staphylococcus hominis subsp. hominis, 408 straminisolvens (Clostridium), 10, 12, 753, Sporomusa sphaeroides, 1112, 1114 Staphylococcus hominis subsp. 754, 819, 824 Sporomusa termitida, 1036, 1066, 1115 novobiosepticus, 398, 408, 409 stratosphericus (Bacillus), 123, 127–128 sporoproducens (Carboxydocella), Staphylococcus hyicus, 393, 397, 399, 404, STREPTOCOCCACEAE, 6, 464, 655, 711 1180, 1181 409, 416 Streptococcus, 6, 169, 258, 259, 457, 500, 513, Sporosarcina, 4, 24, 33, 49, 61, 70, 166, 348, Staphylococcus hyicus subsp. chromogenes, 515, 534, 544, 571, 575, 594, 607, 609, 349, 359, 361, 365, 371, 377, 847 404, 410 612, 655, 685, 687, 696, 710, 711, 714, Sporosarcina aquimarina, 377, 378 Staphylococcus hyicus subsp. hyicus, 409, 410 722, 1008 Sporosarcina globispora, 361, 377, 378, 379 Staphylococcus intermedius, 393, 398, 399, Streptococcus acidominimus, 655, 660, 678, Sporosarcina halophila, 164, 167, 179, 378 405, 410, 411, 416, 420 683, 690, 693, 703 Sporosarcina koreensis, 377, 378, 379 Staphylococcus kloosii, 398, 406, 410 Streptococcus adjacens, 537, 574, 575, 577 Sporosarcina macmurdoensis, 377, 378, 379 Staphylococcus lentus, 392, 393, 399, 406, Streptococcus agalactiae, 21, 249, 655–657, Sporosarcina pasteurii, 361, 377, 378, 380 411, 419, 422 659, 660, 662, 684, 685, 711, 799 Sporosarcina psychrophila, 54, 361, 377, Staphylococcus lugdunensis, 396–398, 411 Streptococcus alactolyticus, 594, 678, 685, 692 378, 380 Staphylococcus lutrae, 399, 411 Streptococcus anginosus, 663, 686, 707 Sporosarcina saromensis, 377, 378, 380 Staphylococcus muscae, 399, 412 Streptococcus australis, 676, 677, 686 Sporosarcina soli, 377, 378, 380 Staphylococcus nepalensis, 412 Streptococcus bovis, 477, 594, 597, 655, Sporosarcina ureae, 24, 70, 377, 378 Staphylococcus pasteuri, 398, 412 661, 676–678, 692, 693, 700, 702, 929, sporosphaeroides (Clostridium), 787, 817 Staphylococcus piscifermentans, 399, 405, 413 930, 1100 sporothermodurans (Bacillus), 33, 34, 38, 39, Staphylococcus pseudintermedius, 420 Streptococcus caballi, 711 48, 57, 59, 117 Staphylococcus pulvereri, 393, 413, 419 Streptococcus canis, 655, 662, 687 Sporotomaculum, 9, 969, 996, 997, 999 Staphylococcus saccharolyticus, 392, 413 Streptococcus caprinus, 678, 693 Sporotomaculum hydroxybenzoicum, 959, Staphylococcus saprophyticus, 393, 397–399, Streptococcus castoreus, 711 999, 1036 406, 414, 418, 419 Streptococcus cecorum, 603 Sporotomaculum syntrophicum, 999 Staphylococcus saprophyticus subsp. bovis, 414 Streptococcus constellatus, 663, 686, 687, 707 sputigena (Selenomonas), 1078, Staphylococcus saprophyticus subsp. Streptococcus constellatus subsp. constellatus, 1106–1109, 1110 saprophyticus, 414, 415 663, 687 sputigenum (Spirillum), 1106, 1108, 1110 Staphylococcus schleiferi, 396, 398, 411, Streptococcus constellatus subsp. pharyngis, stackebrandtii (Planococcus), 348, 350, 354 412, 415 663, 687 staleyi (Pirellula), 328 Staphylococcus schleiferi subsp. coagulans, Streptococcus cremoris, 720 STAPHYLOCOCCACEAE, 5, 20, 392, 396, 393, 399, 415 Streptococcus criceti, 661, 662, 663, 681, 688 397, 421, 423, 455 Staphylococcus schleiferi subsp. schleiferi, Streptococcus cristatus, 661, 676, 677, 688 Staphylococcus, 5, 349, 392, 402–408, 415, 416 Streptococcus defectivus, 575 410–415, 419–421, 423, 971 Staphylococcus sciuri, 392, 393, 397, 399, 411, Streptococcus dentirousetti, 711 Staphylococcus arlettae, 398, 401, 406, 419 416, 419, 422–424 Streptococcus devriesei, 660, 663, 688 Staphylococcus aureus, 26, 182, 246, 249, 392, Staphylococcus sciuri subsp. carnaticus, 399, Streptococcus didelphis, 656, 660, 662, 689 393, 397–399, 400, 408, 410, 414, 418, 416, 418 Streptococcus downei, 662, 663, 689 660, 684, 714, 930, 1133 Staphylococcus sciuri subsp. lentus, 411 Streptococcus durans, 604 Staphylococcus aureus subsp. anaerobius, Staphylococcus sciuri subsp. rodentium, 399, Streptococcus dysgalactiae, 662, 689 392, 393, 401, 416 416, 417 Streptococcus dysgalactiae subsp. Staphylococcus aureus subsp. aureus, 400, 416 Staphylococcus sciuri subsp. sciuri, 411, dysgalactiae, 662, 690 Staphylococcus auricularis, 398, 401, 423 416, 417 Streptococcus dysgalactiae subsp. equisimilis, Staphylococcus capitis, 392, 393, 397–399, 402 Staphylococcus simiae, 420 662, 690 Staphylococcus capitis subsp. capitis, 402, 403 Staphylococcus simulans, 392, 397, 399, 418 Streptococcus entericus, 678, 684, 690 Staphylococcus capitis subsp. urealyticus, 402 Staphylococcus succinus, 418 Streptococcus equi, 657, 662, 691 Staphylococcus caprae, 392, 396, 398, 403, 406 Staphylococcus succinus subsp. casei, 393, Streptococcus equi subsp. equi, 662, 691 Staphylococcus carnosus, 397, 399, 403, 418 399, 418 Streptococcus equi subsp. ruminatorum, 711 Staphylococcus carnosus subsp. carnosus, Staphylococcus succinus subsp. succinus, 393, Streptococcus equi subsp. zooepidemicus, 403, 405 418, 419 662, 691 Staphylococcus carnosus subsp. utilis, 403 Staphylococcus vitulinus, 392, 393, 413, Streptococcus equinus, 677, 678, 691 Staphylococcus caseolyticus, 400, 425 419, 422 Streptococcus faecalis, 594, 601, 607, 813 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1447

Streptococcus faecium, 604, 799, 813 Streptococcus salivarius subsp. sulfidifaciens (Globicatella), 544, 545, 546 Streptococcus ferus, 662, 663, 678, 692 thermophilus, 676 sulfidophilum (Heliobacterium), 914, 917 Streptococcus gallinaceus, 678, 692 Streptococcus sanguinis, 661, 662, 676, 677, Sulfobacillus, 4, 10, 11, 230, 231, 237, 238, Streptococcus gallinarum, 604 681, 692, 701, 706 1044, 1181, 1185, 1189 Streptococcus gallolyticus, 678, 692, 693 Streptococcus shiloi, 696 Sulfobacillus acidophilus, 1182, 1183 Streptococcus gallolyticus subsp. gallolyticus, Streptococcus sinensis, 676, 677, 700, 707 Sulfobacillus disulfidooxidans, 238, 1183 678, 693 Streptococcus sobrinus, 656, 659, 662, 663, 707 Sulfobacillus sibiricus, 1182, 1183, 1184 Streptococcus gallolyticus subsp. Streptococcus suis, 594, 655, 657, 678, 684, 707 Sulfobacillus thermosulfidooxidans, 238, macedonicus, 693 Streptococcus thermophilus, 475, 657, 676, 1182, 1183 Streptococcus gallolyticus subsp. 708, 717, 718 Sulfobacillus thermotolerans, 1182, 1183, 1184 pasteurianus, 678, 702 Streptococcus thoraltensis, 660, 678, 681, 695, sulfureus (Enterococcus), 597, 607 Streptococcus garvieae, 720 703, 708 sulfurigignens (Thermoanaerobacter), 1226, Streptococcus gordonii, 656, 657, 676, 677, Streptococcus uberis, 657, 660, 662, 701, 1228, 1229, 1231, 1237, 1280 694, 699, 707 702, 709 sulfurophilus (Thermoanaerobacter), Streptococcus halichoeri, 711 Streptococcus urinalis, 662, 709 1225, 1237 Streptococcus hansenii, 661, 1016, 1018 Streptococcus vestibularis, 676, 709 suntoryeus (Lactobacillus), 509 Streptococcus henryi, 711 Streptococcus waius, 678, 693, 694 suwonensis (Ureibacillus), 381, 382 Streptococcus hyointestinalis, 678, 694 Streptomyces, 205, 1266 Symbiobacterium, 11, 17, 1044, 1188 Streptococcus hyovaginalis, 660, 678, 695, Streptomyces albus, 659 Symbiobacterium thermophilum, 1188, 703, 709 Subdoligranulum, 10, 16, 1016, 1022, 1037 1189, 1190 Streptococcus ictaluri, 711 Subdoligranulum variabile, 1022, 1024, symbiosum (Clostridium), 820, 1068 Streptococcus infantarius, 678, 692, 695, 697 1037–1039, 1040 Synergistes, 1171, 1172 Streptococcus infantarius subsp. coli, 678, subterminale (Clostridium), 759, 761, 762, Synergistes jonesii, 1169 695, 697 812, 819, 826, 878, 1166, 1169 syntrophicum (Sporotomaculum), 999 Streptococcus infantarius subsp. infantarius, subterraneus (Bacillus), 34, 35, 47, 48, 59, Syntrophobacter, 1247 678, 697 78, 118 Syntrophobotulus, 9, 16, 969, 971, 978, 1000 Streptococcus infantis, 657, 676, 677, 695 subterraneus (Caldanaerobacter), 1232, Syntrophobotulus glycolicus, 974, 1000 Streptococcus iniae, 662, 696 1241, 1258 Syntrophococcus, 6, 8, 16, 893, 921, 926, Streptococcus intermedius, 656, 663, 686, subterraneus (Geobacillus), 146, 147, 153, 156 944, 961 696, 707 subterraneus (Thermaerobacter), 1185, 1186 Syntrophococcus sucromutans, 926, 961, Streptococcus intestinalis, 685, 686 subterraneus (Thermoanaerobacter), 1232, 962, 963 Streptococcus lactis, 711, 718, 719 1241, 1243 SYNTROPHOMONADACEAE, 2, 10, 11, Streptococcus lutetiensis, 678, 692, 695, 697 subterraneus subsp. pacificus 19, 736, 1044, 1047, 1049, 1051–1056, Streptococcus macacae, 662, 663, 697 (Caldanaerobacter), 1242, 1243, 1245 1161, 1162, 1165, 1171, 1172, 1176, 1180, Streptococcus macedonicus, 678, 693, 694 subterraneus subsp. subterraneus 1181, 1185 Streptococcus marimammalium, 711 (Caldanaerobacter), 1242, 1243 Syntrophomonas, 10, 1044, 1045, 1051–1053, Streptococcus massiliensis, 711 subterraneus subsp. tengcongensis 1055, 1161, 1165, 1180 Streptococcus minor, 655, 678, 697 (Caldanaerobacter), 1232, 1242, 1244 Syntrophomonas curvata, 1046, 1048, 1050 Streptococcus mitis, 655, 657, 676, 677, 681, subterraneus subsp. yonseiensis Syntrophomonas erecta, 1046, 1048, 1049, 1050 698, 704, 705 (Caldanaerobacter), 1232, 1242, 1244 Syntrophomonas erecta subsp. erecta, 1046, Streptococcus morbillorum, 457, 458, 661 subtilis (Bacillus), 4, 21, 23, 24, 26, 27, 29, 30, 1048, 1050 Streptococcus mutans, 655–657, 659, 660, 32–38, 40, 42, 45–50, 52, 56, 58–61, 64, Syntrophomonas erecta subsp. 662, 663, 682, 699, 705, 707 65, 68–71, 72, 78, 89, 93, 94, 108, 110, sporosyntropha, 1046, 1048, 1049, 1050 Streptococcus oligofermentans, 660, 676, 119, 128, 131, 166, 169, 182, 238, 244, Syntrophomonas sapovorans, 1046, 1048, 1050 677, 699 249, 252, 278, 299, 301, 310, 312, 317, Syntrophomonas wolfei, 1045, 1046, 1048, Streptococcus oralis, 655–657, 661, 676, 677, 319, 344, 473, 899, 914, 972, 979, 1162, 1049, 1053 681, 700, 704, 705, 723 1232, 1283 Syntrophomonas wolfei subsp. saponavida, Streptococcus orisratti, 663, 700 subtilis subsp. spizizenii (Bacillus), 59, 71, 72, 1046, 1048, 1050 Streptococcus orisuis, 711 94, 110, 119 Syntrophomonas wolfei subsp. wolfei, 1046, Streptococcus ovis, 678, 698, 701 subtilis subsp. subtilis (Bacillus), 71, 72, 94, 1048, 1050, 1161 Streptococcus parasanguinis, 661, 676, 677, 110, 119, 1283 Syntrophospora, 10, 16, 1044, 1051, 1052, 681, 701 Succiniclasticum, 17, 1106, 1116 1052, 1053, 1055 Streptococcus parauberis, 662, 701, 709 Succiniclasticum ruminis, 1100, 1106, 1116, Syntrophospora bryantii, 998, 1048, 1052, 1053 Streptococcus parvulus, 661 1117 Syntrophothermus, 10, 16, 1044, 1048, 1053 Streptococcus pasteurianus, 678, 692, 702 Succinispira, 11, 17, 1059, 1116, 1117 Syntrophothermus lipocalidus, 1048, 1054, Streptococcus peroris, 676, 677, 702 Succinispira mobilis, 1100, 1116, 1117 1055, 1056 Streptococcus phocae, 662, 702 Succinivibrio dextrinosolvens, 865 Syntrophus aciditrophicus, 959 Streptococcus plantarum, 721 succinivorans (Schwartzia), 1105, 1106 Syntrophus buswellii, 1034 Streptococcus pleomorphus, 12, 661, 710, succinogenes (Fibrobacter), 929 Syntrophus gentianae, 959 869, 1299 succinus (Staphylococcus), 418 Streptococcus pluranimalium, 660, 678, succinus subsp. casei (Staphylococcus), 393, tabaci (Atopococcus), 565, 566 684, 703 399, 418 tabacinasalis (Facklamia), 542, 544 Streptococcus pneumoniae, 26, 182, 655–660, succinus subsp. succinus (Staphylococcus), taeanensis (Bacillus), 128 662, 676, 677, 681, 685, 703, 711, 723, 930 393, 418, 419 taiwanensis (Paenibacillus), 295 Streptococcus porcinus, 662, 705 sucromutans (Syntrophococcus), 926, 961, tarantellae (Eubacterium), 774, 784, 801, 802, Streptococcus pseudopneumoniae, 711 962, 963 831, 869, 872, 888 Streptococcus pseudoporcinus, 711 suebicus (Lactobacillus), 470, 471, 475, tardum (Eubacterium), 881, 1157 Streptococcus pyogenes, 655–660, 662, 681, 482, 509 TENERICUTES, 12, 19 685, 687, 690, 722 sueciensis (Megasphaera), 1083, tengcongensis (Thermoanaerobacter), 1232, Streptococcus ratti, 655, 661, 662, 663, 705 1085–1089, 1090 1241, 1244 Streptococcus saccharolyticus, 606 suis (Streptococcus), 594, 655, 657, 678, tenue (Caryophanon), 356–358, 359 Streptococcus salivarius, 655, 659, 660, 684, 707 tenue (Eubacterium), 10, 758, 772, 778, 789, 676, 706 sulci (Eubacterium), 869, 881, 887, 1154 790, 814, 819, 869, 888 Streptococcus salivarius subsp. salivarius, 676 sulci (Fusobacterium), 887 Tenuibacillus, 4, 20, 71, 129, 181, 183, 191 1448 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA

Tenuibacillus multivorans, 192 Thermicanus aegyptius, 454, 1250 Thermoanaerobacter thermocopriae, 1225, tepidamans (Geobacillus), 135, 145, 146, 148, Thermincola, 10, 969, 971, 1001 1230, 1237 153, 157 Thermincola carboxydiphila, 1001, 1245 Thermoanaerobacter thermohydrosulfuricus, Tepidanaerobacter, 1044 Thermincola ferriacetica, 1001, 1002 1225, 1229, 1231, 1232, 1238, 1239 Tepidibacter, 6, 10, 1008, 1013 thermoacetica (Moorella), 454, 455, Thermoanaerobacter uzonensis, 1231 Tepidibacter formicigenes, 837, 1014, 1015 1247–1250, 1251 Thermoanaerobacter wiegelii, 1229, 1238 Tepidibacter thalassicus, 837, 1014 thermoacetoxidans (Desulfotomaculum), Thermoanaerobacter yonseiensis, 1232, Tepidimicrobium, 11, 1143 986, 995, 1254 1241, 1244 tepidiprofundi (Clostridium), 820 Thermoactinomyces, 5, 329, 434, 436–442, THERMOANAEROBACTERALES, 2, 6, 10, tequilensis (Bacillus), 21, 123, 128 443, 444–447, 454 11, 736, 737, 1056, 1224, 1232, 1245, terephthalicicum (Pelotomaculum ), 973, Thermoactinomyces candidus, 434, 442, 443 1272, 1282, 1287, 1296, 1297 996, 998 Thermoactinomyces dichotomicus, 434, Thermoanaerobacterium, 11, 12, 836, termitida (Sporomusa), 1036, 1066, 1115 436–442, 449 1145, 1225, 1231, 1242, 1249, 1275, termitidis (Clostridium), 10, 765, 766, 782, Thermoactinomyces intermedius, 434, 438, 1279, 1286, 1297 785, 796, 820, 1036 440, 442, 443 Thermoanaerobacterium aciditolerans, termitidis (Sporobacter), 959–961, 1031, Thermoactinomyces peptonophilus, 434, 437, 1279, 1284 1032, 1034, 1035, 1036 438, 440, 442, 447, 448 Thermoanaerobacterium aotearoense, 1237, termitis (Enterococcus), 600, 607 Thermoactinomyces putidus, 434, 436–440, 1279, 1282, 1284, 1296, 1297 terrae (Paenibacillus), 293 442, 445 Thermoanaerobacterium terrae (Sporolactobacillus), 390 Thermoactinomyces sacchari, 434–442, 444 polysaccharolyticum, 1281–1283, 1285 terranovensis (Aneurinibacillus), 299, 301 Thermoactinomyces thalpophilus, 434–444 Thermoanaerobacterium saccharolyticum, terrenus (Ureibacillus), 381 Thermoactinomyces vulgaris, 434–436, 1280–1282, 1285, 1286 Terribacillus, 20 438–440, 442, 443 Thermoanaerobacterium terrigena (Klebsiella), 34 THERMOACTINOMYCETACEAE, 4, 5, 20, thermosaccharolyticum, 1279–1282, 1285 terrigena (Paenibacillus), 295 434, 444, 446–449 Thermoanaerobacterium tertium (Clostridium), 764, 766, 767, 776, thermoaerophilus (Aneurinibacillus), 152, thermosulfurigenes, 1279–1282, 1283 777, 785, 794, 811, 813, 814, 821 298, 299, 301, 305 Thermoanaerobacterium xylanolyticum, 1286 testaceum (Brevibacterium), 571 thermoaerophilus (Bacillus), 70, 152, 153, Thermoanaerobacterium zeae, 1282, tetani (Clostridium), 714, 769, 813, 821 300, 305 1283, 1287 tetanomorphum (Clostridium), 749, 789, thermoalcaliphilum (Clostridium), 796, 823 Thermoanaerobium, 836, 1225 790, 822 thermoamylovorans (Bacillus), 34, 59, 61, 64, Thermoanaerobium acetigenum, 1276, 1278 tetradius (Anaerococcus), 1131 78, 118, 152, 153 Thermoanaerobium brockii, 1233, 1234 tetradius (Peptostreptococcus), 1008, 1131 Thermoanaerobacter, 2, 6, 9–11, 12, 736, 737, thermoautotrophica (Moorella), Tetragenococcus, 6, 421, 513, 514, 516, 564, 836, 849, 1056, 1145, 1166, 1167, 1224, 1248–1251, 1253 568, 594, 600, 607, 608, 610, 611, 615, 617 1225, 1241, 1242, 1245, 1249, 1250, 1257, Thermobacillus, 4, 71, 269, 317, 321 Tetragenococcus halophilus, 514, 607, 1258, 1263, 1269, 1275, 1279–1283, 1286, Thermobacillus xylanilyticus, 321, 322, 962 611–613, 614 1287, 1289, 1297, 1298 Thermobacterium, 500 Tetragenococcus koreensis, 611, 612, 615, 616 Thermoanaerobacter acetoethylicus, Thermobacterium bulgaricum, 490 Tetragenococcus muriaticus, 611–614, 615 1233, 1272 Thermobacterium lactis, 490 Tetragenococcus solitarius, 600, 611–613, 616 Thermoanaerobacter brockii, 1166, 1225, Thermobacteroides, 1225, 1272 texcoconensis (Tindallia), 851, 852, 854, 855 1226, 1229–1231, 1233, 1234 Thermobacteroides acetoethylicus, thailandensis (Halobacillus), 167 Thermoanaerobacter brockii subsp. brockii, 1233, 1272 thailandensis (Weissella), 643, 646, 647, 649 1166, 1225, 1229–1231, 1233, 1234 Thermobacteroides leptospartum, 818 thalassicus (Tepidibacter), 837, 1014 Thermoanaerobacter brockii subsp. finnii, Thermobacteroides proteolyticus, 1271, 1272 Thalassobacillus, 4, 20, 181, 183, 185, 193 1225, 1226, 1229, 1231, 1234 thermobenzoicum (Desulfotomaculum), Thalassobacillus devorans, 193 Thermoanaerobacter brockii subsp. 986, 995 thalpophilus (Thermoactinomyces), 434–444 lactiethylicus, 1226, 1234 thermobenzoicum subsp. thermobenzoicum Thermacetogenium, 11, 1225, 1249, 1253 Thermoanaerobacter ethanolicus, (Desulfotomaculum), 995 Thermacetogenium phaeum, 990, 1250, 1161, 1224–1226, 1229, 1230, 1231, Thermobrachium, 6, 736, 738, 848, 1056 1253–1255, 1256 1236, 1282 Thermobrachium celere, 736, 738, 834, 836, Thermaerobacter, 10, 11, 1044, 1184, Thermoanaerobacter italicus, 1226, 1229, 837, 848 1186, 1189 1230, 1234 thermobutyricum (Clostridium), 737, 780, Thermaerobacter marianensis, 1185 Thermoanaerobacter keratinophilus, 782, 823, 825 Thermaerobacter nagasakiensis, 1184, 1185, 1231, 1239 thermocatenulatus (Bacillus), 70, 148, 152, 1186 Thermoanaerobacter kivui, 1225, 1231, 1235, 153, 157, 159 Thermaerobacter subterraneus, 1185, 1186 1249, 1250 thermocatenulatus (Geobacillus), 121, thermalcaliphilum (Methanobacterium), 1057 Thermoanaerobacter mathranii, 1225, 146–148, 153, 157 Thermanaeromonas, 11, 1225, 1256 1229–1231, 1235 thermocellum (Clostridium), 10, 737, 753, Thermanaeromonas toyohensis, Thermoanaerobacter mathranii subsp. 754, 766, 819, 824, 836, 1202, 1229, 1231, 1256–1258, 1259 alimentarius, 1225, 1235, 1236 1238, 1249, 1275, 1277, 1281, 1282 Thermanaerovibrio, 10, 11, 1044, 1109, 1166, Thermoanaerobacter mathranii subsp. thermocisternum (Desulfotomaculum), 995 1167, 1169, 1176, 1178 mathranii, 1229–1231, 1235, 1236 thermocloacae (Bacillus), 4, 33, 34, 48, 59, Thermanaerovibrio acidaminovorans, 836, Thermoanaerobacter pseudethanolicus, 78, 118, 152, 153 1109, 1166, 1169, 1176, 1177, 1178 1229–1231, 1233, 1236 Thermococcus, 1245 Thermanaerovibrio velox, 1169, 1176, Thermoanaerobacter siderophilus, 1225, thermocopriae (Clostridium), 1237, 1275, 1277 1177, 1178 1236, 1237 thermocopriae (Thermoanaerobacter), 1225, thermantarcticus (Bacillus), 48, 71, 122, 152, Thermoanaerobacter subterraneus, 1232, 1230, 1237 153, 159 1241, 1243 thermodenitrificans (Bacillus), 70, 148, thermautotrophica (Carboxydocella), Thermoanaerobacter sulfurigignens, 1226, 152, 157 1180, 1245 1228, 1229, 1231, 1237, 1280 thermodenitrificans (Geobacillus), 121, 146, thermautotrophicus (Methanothermobacter), Thermoanaerobacter sulfurophilus, 147, 153, 157 1054, 1055, 1057, 1247, 1249, 1250, 1225, 1237 THERMODESULFOBACTERIA, 1271 1254, 1255 Thermoanaerobacter tengcongensis, 1232, Thermodesulfobacterium, 1269 Thermicanus, 4, 6, 269, 454 1241, 1244 Thermodesulfobacterium commune, 1240 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA 1449

Thermodesulfobacterium Thermosyntropha, 10, 1044, 1051, 1052, Turicibacter sanguinis, 962, 1314, 1315 hydrogeniphilum, 1269 1054, 1055 tusciae (Bacillus), 4, 21, 33, 34, 48, 60, 78, THERMODESULFOBIACEAE, 11, 1224, Thermosyntropha lipolytica, 1055, 1056 119, 152, 153 1268, 1272 Thermoterrabacterium ferrireducens, 1246, tyrobutyricum (Clostridium), 786, 789, Thermodesulfobium, 11, 1268, 1271 1253, 1256 826, 1161 Thermodesulfobium narugense, 1268, 1269 thermoterrenum (Anaerobaculum), 1166, Thermodesulfovibrio, 1269 1169–1172, 1173, 1177 uberis (Streptococcus), 657, 660, 662, 701, Thermoflavimicrobium, 5, 434, 436, 446, 449 Thermothrix, 11, 1195, 1196, 1201, 1202 702, 709 Thermoflavimicrobium dichotomicum, Thermotoga, 849 uliginosum (Clostridium), 760, 826 434, 449 THERMOTOGALES, 849 ultunense (Clostridium), 827, 850, 1143– thermoglucosidasius (Bacillus), 70, 152, 157 thermotolerans (Cohnella), 317, 319 1145, 1166, 1254, 1256 thermoglucosidasius (Geobacillus), 146–148, thermotolerans (Gracilibacter), 12, 910, ultunensis (Lactobacillus), 477, 510 153, 157 911, 912 undae (Exiguobacterium), 461, 462, 463 Thermohalobacter, 7, 737, 738, 848, 901 thermotolerans (Lactobacillus), 510 undosum (Heliobacterium), 914, 918 Thermohalobacter berrensis, 738, 839, thermotolerans (Sulfobacillus), 1182, uniforme (Eubacterium), 868, 889 840, 848, 849, 850, 901, 902, 1144, 1145, 1183, 1184 ureae (Sporosarcina), 24, 70, 377, 378 1192, 1203 Thermovenabulum, 12, 1044, 1282, 1287, 1290 Ureibacillus, 4, 24, 61, 70, 348, 381 Thermohydrogenium, 1044 Thermovenabulum ferriorganovorum, 1258, Ureibacillus suwonensis, 381, 382 thermohydrosulfuricum (Clostridium), 1238 1290, 1291 Ureibacillus terrenus, 381 thermohydrosulfuricus Thermovirga, 10, 1044, 1172 Ureibacillus thermosphaericus, 152, 381 (Thermoanaerobacter), 1225, 1229, Thermus aquaticus, 136, 854 urinae (Aerococcus), 533, 534, 535, 1134 1231, 1232, 1238, 1239 thiaminolyticus (Bacillus), 70, 293 urinaeequi (Aerococcus), 514 thermolacticum (Clostridium), 818, 836, 1249 thiaminolyticus (Paenibacillus), 42, 121, 293 urinaeequi (Pediococcus), 513, 514, 534, thermoleovorans (Bacillus), 70, 121, 152, 153, Thiomonas thermosulfata, 1269 611, 613 156–159 thioparans (Bacillus), 128 urinaehominis (Aerococcus), 533, 534, 535, thermoleovorans (Geobacillus), 145–148, thiosulfatigenes (Desulfonispora), 982 1134 153, 156, 158 thiosulfatireducens (Clostridium), 820, 825 urinalis (Paenibacillus), 295 thermoleovorans subsp. stromboliensis thoraltensis (Streptococcus), 660, 678, 681, urinalis (Streptococcus), 662, 709 (Geobacillus), 158, 160 695, 703, 708 uzenensis (Geobacillus), 146, 147, 153, Thermomonospora, 439, 441 thornei (Pasteuria), 329, 332, 335, 338, 340, 158, 962 Thermomonospora chromogena, 439 341, 343–345 uzonensis (Thermoanaerobacter), 1231 thermopalmarium (Clostridium), 780, 782, thuringiensis (Bacillus), 21, 23, 26, 27, 31, 32, 824, 836 34, 35, 37–42, 44–50, 59–61, 64, 67, 70, vaccinostercus (Lactobacillus), 479, thermopapyrolyticum (Clostridium), 825 78, 92, 96, 104, 110, 118, 121, 273 482, 510 thermophilum (Dictyoglomus), 1166 timidum (Eubacterium), 1157, 1159 vaginalis (Anaerococcus), 1131 thermophilum (Symbiobacterium), 1188, timidum (Mogibacterium), 869, 1154, 1157, vaginalis (Lactobacillus), 478, 479, 510 1189, 1190 1158, 1159 vaginalis (Peptostreptococcus), 899, 1131 thermophilus (Saccharococcus), 190, 191, 192 timonensis (Paenibacillus), 293 Vagococcus, 6, 513, 514, 564, 568, 594, 607, thermophilus (Streptococcus), 475, 657, 676, Tindallia, 6, 737, 832, 833, 842, 851, 855, 1152 608, 611, 612, 616, 618 708, 717, 718 Tindallia californiensis, 837, 851, 852, 854 Vagococcus fessus, 616, 617 thermopropionicum (Pelotomaculum), 970, Tindallia magadiensis, 837, 841, 842, 851, Vagococcus fluvialis, 600, 616, 617 973, 996, 997, 1001 852, 854, 1153, 1154 Vagococcus lutrae, 616, 617 thermoruber (Bacillus), 70, 152, 316 Tindallia texcoconensis, 851, 852, 854, 855 Vagococcus salmoninarum, 616, 617 thermoruber (Brevibacillus), 152, 300, 307, Tissierella, 11, 850, 939, 1137, 1143, 1144, validus (Bacillus), 62, 70, 293 308, 310, 312, 316 1146, 1147 validus (Paenibacillus), 70, 96, 271, 293 thermosaccharolyticum (Clostridium), 736, Tissierella creatinini, 1142, 1143, 1147 vallismortis (Bacillus), 59, 60, 71, 72, 78, 94, 1231, 1280, 1285 Tissierella creatinophila, 850, 1142, 1147 110, 119 thermosaccharolyticum Tissierella praeacuta, 1137, 1138, 1142, variabile (Subdoligranulum), 1022, 1024, (Thermoanaerobacterium), 1144, 1146 1037–1039, 1040 1279–1282, 1285 tolerans (Alicyclobacillus), 230, 231. 235, 237, vedderi (Bacillus), 26, 33, 48, 60, 78, 119 thermosapovorans (Desulfotomaculum), 238, 242, 1183 Veillonella, 6, 11, 19, 736, 962, 1059, 1064, 995, 999 tonsillarum (Erysipelothrix), 1299–1304, 1065, 1068, 1069, 1072, 1081, 1083, 1085, Thermosediminibacter, 11, 1044, 1282, 1287 1306, 1311 1088, 1091, 1094, 1108 Thermosediminibacter litoriperuensis, 1287, torques (Ruminococcus), 779, 795, 1018 Veillonella alcalescens, 1063, 1100 1288, 1289 tortuosum (Eubacterium), 784, 869, 889, 1299 Veillonella alcalescens subsp. Thermosediminibacter oceani, 1287, toyohensis (Thermanaeromonas), alcalescens, 1064 1288, 1289 1256–1258, 1259 Veillonella alcalescens subsp. criceti, 1064 Thermosinus, 11, 1059, 1118 transvaalensis (Alkaliphilus), 737, 829, Veillonella alcalescens subsp. dispar, 1064 Thermosinus carboxydivorans, 1118, 1245 837, 1153 Veillonella alcalescens subsp. ratti, 1065 Thermosipho, 1273 Treponema, 929 Veillonella atypica, 1062, 1063, 1064 thermosphacta (Brochothrix), 244, 257–259, Trichococcus, 6, 186, 513, 549, 555, 568, 576, Veillonella caviae, 1064 260, 261, 1303 577, 585, 1016 Veillonella criceti, 1059, 1062, 1063, 1064 thermosphaericus (Bacillus), 24, 70, 152, 381 Trichococcus collinsii, 585, 586, 587 Veillonella denticariosi, 1062, 1063, 1064 thermosphaericus (Ureibacillus), 152, 381 Trichococcus flocculiformis, 585, 586, 587 Veillonella dispar, 1060, 1062, 1063, 1064 thermosubterraneum Trichococcus palustris, 585–587, 588 Veillonella montpellierensis, 1061, (Desulfotomaculum), 996 Trichococcus pasteurii, 585–587, 588 1062, 1064 thermosuccinogenes (Clostridium), 10, Trichococcus patagoniensis, 585–587, 588 Veillonella parvula, 1059, 1062, 1063, 1064, 825, 910 trichodes (Lactobacillus), 497 1071, 1088, 1094 thermosulfata (Thiomonas), 1269 tropicus (Amphibacillus), 131, 132, 133, 187 Veillonella parvula subsp. atypica, 1064 thermosulfidooxidans (Sulfobacillus), 238, trueperi (Halobacillus), 164, 165, 167, 168 Veillonella parvula subsp. parvula, 1064 1182, 1183 Tuberibacillus, 5, 71 Veillonella parvula subsp. rodentium, 1065 thermosulfurigenes tundrae (Acetobacterium), 891, 895 Veillonella ratti, 1061–1063, 1065 (Thermoanaerobacterium), 1279–1282, turicensis (Paenibacillus), 293 Veillonella rodentium, 1062, 1065 1283 Turicibacter, 3, 12, 1299, 1314 Veillonella rogosae, 1065 1450 INDEX OF SCIENTIFIC NAMES OF ARCHAEA AND BACTERIA

VEILLONELLACEAE, 6, 11, 19, 736, 962, Viridibacillus, 71 wolfei subsp. wolfei (Syntrophomonas), 1046, 1059, 1063, 1066, 1068, 1071, 1072, 1075, Viridibacillus arenosi, 123 1048, 1050, 1161 1076, 1079, 1083, 1088, 1089, 1091, 1094, Viridibacillus arvi, 124 woodii (Acetobacterium), 891–893, 894, 904, 1096, 1098, 1100, 1102, 1109, 1116–1119 Viridibacillus neidei, 111 1000, 1156 velezensis (Bacillus), 128 viridis (Saccharomonospora), 441 woosongensis (Paenibacillus), 295 velox (Thermanaerovibrio), 1169, 1176, vitarumen (Brevibacterium), 571 wynnii (Paenibacillus), 294 1177, 1178 viterbiensis (Caloramator), 738, 834, 836, 838 ventriculi (Sarcina), 837, 843–846, 847, 1029 Vitreoscilla stercoraria, 360, 361 xinjiangensis (Paenibacillus), 294 ventriosum (Eubacterium), 868, 886, 889 vitulinus (Lactobacillus), 465, 1299, 1309 xylanilyticus (Paenibacillus), 291, 294 versmoldensis (Lactobacillus), 476, 510 vitulinus (Staphylococcus), 392, 393, 413, xylanilyticus (Thermobacillus), 321, vescum (Mogibacterium), 1157, 1158, 1160 419, 422 322, 962 vestibularis (Streptococcus), 676, 709 voinovskiensis (Anoxybacillus), 134–136, 141 xylanivorans (Pseudobutyrivibrio), 860, Vibrio, 927, 1020, 1075, 1104, 1174, 1176 vulcanalis (Alicyclobacillus), 230, 238, 242 934–936, 953, 962 Vibrio anguillarum, 553 vulcani (Bacillus), 152, 153, 159 xylanolyticum (Clostridium), 751, 753, 754, Vibrio ordalii, 553 vulcani (Geobacillus), 146, 148, 159 765, 828, 990 vibrioides (Propionispora), 1060, 1103, Vulcanibacillus, 20, 71 xylanolyticum (Thermoanaerobacterium), 1104, 1118 vulgaris (Desulfovibrio), 873, 1034 1286 vietnamensis (Bacillus), 60, 120 vulgaris (Thermoactinomyces), 434–436, xylanophilum (Eubacterium), 868, 890 villorum (Enterococcus), 597, 600, 607 438–440, 442, 443 xylanovorans (Clostridium), 785, 828 villosum (Clostridium), 1009, 1012 xylanus (Amphibacillus), 131, 132, 161, villosus (Filifactor), 1009, 1012 waius (Streptococcus), 678, 693, 694 169, 187 vincentii (Clostridium), 777, 797, 827 wakoensis (Bacillus), 128 xylosus (Lactobacillus), 480 vireti (Bacillus), 60, 120 warneri (Staphylococcus), 392, 396–398, xylosus (Staphylococcus), 393, 398, 399, 406, Virgibacillus, 4, 24, 47, 61, 67, 70, 142, 419, 420 407, 418–420 175–177, 181–183, 187, 189, 191, 193 weihenstephanensis (Bacillus), 48, 60, 78, 96, Virgibacillus carmonensis, 183, 194–196, 110, 119, 120 yamanashiensis (Lactobacillus), 502 200, 201 Weissella, 6, 465, 474, 476, 479, 480, 512, 516, yangpyeongensis (Lysobacter), 340 Virgibacillus dokdonensis, 183, 194, 195, 555, 624, 625, 627, 629, 640, 643, 649 yeomjeoni (Halobacillus), 168 200, 201 Weissella cibaria, 630, 643, 645, 646, 647 Yersinia ruckeri, 553 Virgibacillus halodenitrificans, 176, 183, 194, Weissella confusa, 629, 630, 643, 645, 646, 647 yonseiensis (Thermoanaerobacter), 1232, 195, 202 Weissella halotolerans, 629, 643, 647, 648 1241, 1244 Virgibacillus halophilus, 200 Weissella hellenica, 643, 645–647, 648 yurii (Eubacterium), 869, 890 Virgibacillus koreensis, 183, 194, 195, 200, 202 Weissella kandleri, 629, 643, 647, 648 yurii subsp. margaretiae (Eubacterium), 891 Virgibacillus marismortui, 167, 171, 176, 183, Weissella kimchii, 647 yurii subsp. schtitka (Eubacterium), 891 194, 195, 202 Weissella koreensis, 643, 645–647, 648 yurii subsp. yurii (Eubacterium), 890 Virgibacillus necropolis, 183, 194–196, Weissella minor, 629, 643, 647, 648 200, 202 Weissella paramesenteroides, 624, 627, 629, zanthoxyli (Paenibacillus), 295 Virgibacillus pantothenticus, 38, 166, 167, 636, 637, 643, 645–647, 648 zeae (Caldanaerobius), 1283, 1287 176, 183, 187, 195–197, 200 Weissella soli, 643, 645, 647, 649 zeae (Lactobacillus), 494, 510 Virgibacillus picturae, 177, 181, 183, 184, 200 Weissella thailandensis, 643, 646, 647, 649 zeae (Thermoanaerobacterium), 1282, Virgibacillus proomii, 167, 176, 183, 187, Weissella viridescens, 629, 630, 643, 645, 1283, 1287 194–196, 200, 203 646, 647 zopfii (Bacterium), 370 Virgibacillus salexigens, 167, 176, 183, 194, welchii (Bacterium), 799 zopfii (Kurthia), 356, 365–369, 370 195, 203 welshimeri (Listeria), 245, 246, 248, 250, 252, zymae (Lactobacillus), 511 viridans (Aerococcus), 533, 534, 535, 613, 253, 256 Zymomonas, 1098 1133, 1134 wiegelii (Thermoanaerobacter), 1229, 1238 Zymophilus, 11, 1059, 1075, 1076, 1089, 1094, viridans (Carnobacterium), 549–553, 557 wieringae (Acetobacterium), 891, 892, 895 1098, 1099, 1105, 1119 viride (Clostridium), 10, 827 wolfei (Syntrophomonas), 1045, 1046, 1048, Zymophilus paucivorans, 1094, 1095, viridescens (Lactobacillus), 629, 643, 647, 648 1049, 1053 1119, 1120 viridescens (Weissella), 629, 630, 643, 645, wolfei subsp. saponavida (Syntrophomonas), Zymophilus raffinosivorans, 1094, 1095, 646, 647 1046, 1048, 1050 1119, 1120