Embryonic and Larval Development of the Soft-Shell Clam Mya Arenaria L., 1758 (Heterodonta: Myidae) in the White Sea Эмбри
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Analysis of Synonymous Codon Usage Patterns in Sixty-Four Different Bivalve Species
Analysis of synonymous codon usage patterns in sixty-four diVerent bivalve species Marco Gerdol1, Gianluca De Moro1, Paola Venier2 and Alberto Pallavicini1 1 Department of Life Sciences, University of Trieste, Trieste, Italy 2 Department of Biology, University of Padova, Padova, Italy ABSTRACT Synonymous codon usage bias (CUB) is a defined as the non-random usage of codons encoding the same amino acid across diVerent genomes. This phenomenon is common to all organisms and the real weight of the many factors involved in its shaping still remains to be fully determined. So far, relatively little attention has been put in the analysis of CUB in bivalve mollusks due to the limited genomic data available. Taking advantage of the massive sequence data generated from next generation sequencing projects, we explored codon preferences in 64 diVerent species pertaining to the six major evolutionary lineages in Bivalvia. We detected remarkable diVerences across species, which are only partially dependent on phylogeny. While the intensity of CUB is mild in most organisms, a heterogeneous group of species (including Arcida and Mytilida, among the others) display higher bias and a strong preference for AT-ending codons. We show that the relative strength and direction of mutational bias, selection for translational eYciency and for translational accuracy contribute to the establishment of synonymous codon usage in bivalves. Although many aspects underlying bivalve CUB still remain obscure, we provide for the first time an overview of this phenomenon -
Paleoenvironmental Interpretation of Late Glacial and Post
PALEOENVIRONMENTAL INTERPRETATION OF LATE GLACIAL AND POST- GLACIAL FOSSIL MARINE MOLLUSCS, EUREKA SOUND, CANADIAN ARCTIC ARCHIPELAGO A Thesis Submitted to the College of Graduate Studies and Research in Partial Fulfillment of the Requirements for the Degree of Master of Science in the Department of Geography University of Saskatchewan Saskatoon By Shanshan Cai © Copyright Shanshan Cai, April 2006. All rights reserved. i PERMISSION TO USE In presenting this thesis in partial fulfillment of the requirements for a Postgraduate degree from the University of Saskatchewan, I agree that the Libraries of this University may make it freely available for inspection. I further agree that permission for copying of this thesis in any manner, in whole or in part, for scholarly purposes may be granted by the professor or professors who supervised my thesis work or, in their absence, by the Head of the Department or the Dean of the College in which my thesis work was done. It is understood that any copying or publication or use of this thesis or parts thereof for financial gain shall not be allowed without my written permission. It is also understood that due recognition shall be given to me and to the University of Saskatchewan in any scholarly use which may be made of any material in my thesis. Requests for permission to copy or to make other use of material in this thesis in whole or part should be addressed to: Head of the Department of Geography University of Saskatchewan Saskatoon, Saskatchewan S7N 5A5 i ABSTRACT A total of 5065 specimens (5018 valves of bivalve and 47 gastropod shells) have been identified and classified into 27 species from 55 samples collected from raised glaciomarine and estuarine sediments, and glacial tills. -
Taxonomy and Paleoecology of a New Species of Sphenia (Bivalvia; Myidae) from the Pleistocene of Florida Jackson E
TAXONOMY AND PALEOECOLOGY OF A NEW SPECIES OF SPHENIA (BIVALVIA; MYIDAE) FROM THE PLEISTOCENE OF FLORIDA JACKSON E. LEWIS TULANE UNIVERSITY CONTENTS Page ABSTRACT ------------------------- ----------- -- --- --· ---- ----------· --- --- ------------- ---· --- -----· ·-- 23 I. INTRODUCTION ______________________ ________________ __ -------------------------------------- ·---- ____________ ____ _ 2 3 II. SYSTEMATIC PALEONTOLOGY __________________ _________________ __________________________ __ ___ ___________ 24 III. pALEOECOLOGICAL IMPLICATIONS ___________________________________________________________________ 30 IV. LITERATURE CITED _ _______________ ___________________ ______ ___________ ________________ ___ _ ___ ___ 31 ABSTRACT T 12 S, R 29 E; this site, designated Uni The new species, Sphenia tumida} is de versity of Florida Locality 5, is approxi scribed from the Pleistocene of Flagler mately eight miles west of Bunnell. Al County, Florida, an occurrence believed to though the specimens were assigned tenta represent the last known appearance of the tively to the genus Cuspidaria in the original genus in the western Atlantic waters im report (Lewis, 1964), their true affinities mediately adjacent to the North American are with species of Sphenia} a genus whose continent. Taxonomic characters of the genus living representatives are found in the west are reviewed, as are the geographic distribu ern Atlantic only in the vicinity of Puerto tion and ecology of living species and the Rico. It is known in eastern North America, -
The Impact of Hydraulic Blade Dredging on a Benthic Megafaunal Community in the Clyde Sea Area, Scotland
Journal of Sea Research 50 (2003) 45–56 www.elsevier.com/locate/seares The impact of hydraulic blade dredging on a benthic megafaunal community in the Clyde Sea area, Scotland C. Hauton*, R.J.A. Atkinson, P.G. Moore University Marine Biological Station Millport (UMBSM), Isle of Cumbrae, Scotland, KA28 0EG, UK Received 4 December 2002; accepted 13 February 2003 Abstract A study was made of the impacts on a benthic megafaunal community of a hydraulic blade dredge fishing for razor clams Ensis spp. within the Clyde Sea area. Damage caused to the target species and the discard collected by the dredge as well as the fauna dislodged by the dredge but left exposed at the surface of the seabed was quantified. The dredge contents and the dislodged fauna were dominated by the burrowing heart urchin Echinocardium cordatum, approximately 60–70% of which survived the fishing process intact. The next most dominant species, the target razor clam species Ensis siliqua and E. arcuatus as well as the common otter shell Lutraria lutraria, did not survive the fishing process as well as E. cordatum, with between 20 and 100% of individuals suffering severe damage in any one dredge haul. Additional experiments were conducted to quantify the reburial capacity of dredged fauna that was returned to the seabed as discard. Approximately 85% of razor clams retained the ability to rapidly rebury into both undredged and dredged sand, as did the majority of those heart urchins Echinocardium cordatum which did not suffer aerial exposure. Individual E. cordatum which were brought to surface in the dredge collecting cage were unable to successfully rebury within three hours of being returned to the seabed. -
Bankia Setacea Class: Bivalvia, Heterodonta, Euheterodonta
Phylum: Mollusca Bankia setacea Class: Bivalvia, Heterodonta, Euheterodonta Order: Imparidentia, Myida The northwest or feathery shipworm Family: Pholadoidea, Teredinidae, Bankiinae Taxonomy: The original binomen for Bankia the presence of long siphons. Members of setacea was Xylotrya setacea, described by the family Teredinidae are modified for and Tryon in 1863 (Turner 1966). William Leach distiguished by a wood-boring mode of life described several molluscan genera, includ- (Sipe et al. 2000), pallets at the siphon tips ing Xylotrya, but how his descriptions were (see Plate 394C, Coan and Valentich-Scott interpreted varied. Although Menke be- 2007) and distinct anterior shell indentation. lieved Xylotrya to be a member of the Phola- They are commonly called shipworms (though didae, Gray understood it as a member of they are not worms at all!) and bore into many the Terdinidae and synonyimized it with the wooden structures. The common name ship- genus Bankia, a genus designated by the worm is based on their vermiform morphology latter author in 1842. Most authors refer to and a shell that only covers the anterior body Bankia setacea (e.g. Kozloff 1993; Sipe et (Ricketts and Calvin 1952; see images in al. 2000; Coan and Valentich-Scott 2007; Turner 1966). Betcher et al. 2012; Borges et al. 2012; Da- Body: Bizarrely modified bivalve with re- vidson and de Rivera 2012), although one duced, sub-globular body. For internal anato- recent paper sites Xylotrya setacea (Siddall my, see Fig. 1, Canadian…; Fig. 1 Betcher et et al. 2009). Two additional known syno- al. 2012. nyms exist currently, including Bankia Color: osumiensis, B. -
The Effects of Environment on Arctica Islandica Shell Formation and Architecture
Biogeosciences, 14, 1577–1591, 2017 www.biogeosciences.net/14/1577/2017/ doi:10.5194/bg-14-1577-2017 © Author(s) 2017. CC Attribution 3.0 License. The effects of environment on Arctica islandica shell formation and architecture Stefania Milano1, Gernot Nehrke2, Alan D. Wanamaker Jr.3, Irene Ballesta-Artero4,5, Thomas Brey2, and Bernd R. Schöne1 1Institute of Geosciences, University of Mainz, Joh.-J.-Becherweg 21, 55128 Mainz, Germany 2Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany 3Department of Geological and Atmospheric Sciences, Iowa State University, Ames, Iowa 50011-3212, USA 4Royal Netherlands Institute for Sea Research and Utrecht University, P.O. Box 59, 1790 AB Den Burg, Texel, the Netherlands 5Department of Animal Ecology, VU University Amsterdam, Amsterdam, the Netherlands Correspondence to: Stefania Milano ([email protected]) Received: 27 October 2016 – Discussion started: 7 December 2016 Revised: 1 March 2017 – Accepted: 4 March 2017 – Published: 27 March 2017 Abstract. Mollusks record valuable information in their hard tribution, and (2) scanning electron microscopy (SEM) was parts that reflect ambient environmental conditions. For this used to detect changes in microstructural organization. Our reason, shells can serve as excellent archives to reconstruct results indicate that A. islandica microstructure is not sen- past climate and environmental variability. However, animal sitive to changes in the food source and, likely, shell pig- physiology and biomineralization, which are often poorly un- ment are not altered by diet. However, seawater temperature derstood, can make the decoding of environmental signals had a statistically significant effect on the orientation of the a challenging task. -
Spatial Variability in Recruitment of an Infaunal Bivalve
Spatial Variability in Recruitment of an Infaunal Bivalve: Experimental Effects of Predator Exclusion on the Softshell Clam (Mya arenaria L.) along Three Tidal Estuaries in Southern Maine, USA Author(s): Brian F. Beal, Chad R. Coffin, Sara F. Randall, Clint A. Goodenow Jr., Kyle E. Pepperman, Bennett W. Ellis, Cody B. Jourdet and George C. Protopopescu Source: Journal of Shellfish Research, 37(1):1-27. Published By: National Shellfisheries Association https://doi.org/10.2983/035.037.0101 URL: http://www.bioone.org/doi/full/10.2983/035.037.0101 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Journal of Shellfish Research, Vol. 37, No. 1, 1–27, 2018. SPATIAL VARIABILITY IN RECRUITMENT OF AN INFAUNAL BIVALVE: EXPERIMENTAL EFFECTS OF PREDATOR EXCLUSION ON THE SOFTSHELL CLAM (MYA ARENARIA L.) ALONG THREE TIDAL ESTUARIES IN SOUTHERN MAINE, USA 1,2 3 2 3 BRIAN F. -
Siliqua Patula Class: Bivalvia; Heterodonta Order: Veneroida the Flat Razor Clam Family: Pharidae
Phylum: Mollusca Siliqua patula Class: Bivalvia; Heterodonta Order: Veneroida The flat razor clam Family: Pharidae Taxonomy: The familial designation of this (see Plate 397G, Coan and Valentich-Scott species has changed frequently over time. 2007). Previously in the Solenidae, current intertidal Body: (see Plate 29 Ricketts and Calvin guides include S. patula in the Pharidae (e.g., 1952; Fig 259 Kozloff 1993). Coan and Valentich-Scott 2007). The superfamily Solenacea includes infaunal soft Color: bottom dwelling bivalves and contains the two Interior: (see Fig 5, Pohlo 1963). families: Solenidae and Pharidae (= Exterior: Cultellidae, von Cosel 1993) (Remacha- Byssus: Trivino and Anadon 2006). In 1788, Dixon Gills: described S. patula from specimens collected Shell: The shell in S. patula is thin and with in Alaska (see Range) and Conrad described sharp (i.e., razor-like) edges and a thin profile the same species, under the name Solen (Fig. 4). Thin, long, fragile shell (Ricketts and nuttallii from specimens collected in the Calvin 1952), with gapes at both ends Columbia River in 1838 (Weymouth et al. (Haderlie and Abbott 1980). Shell smooth 1926). These names were later inside and out (Dixon 1789), elongate, rather synonymized, thus known synonyms for cylindrical and the length is about 2.5 times Siliqua patula include Solen nuttallii, the width. Solecurtus nuttallii. Occasionally, researchers Interior: Prominent internal vertical also indicate a subspecific epithet (e.g., rib extending from beak to margin (Haderlie Siliqua siliqua patula) or variations (e.g., and Abbott 1980). Siliqua patula var. nuttallii, based on rib Exterior: Both valves are similar and morphology, see Possible gape at both ends. -
Softshell Clam
REFEqENCE COPY Do Not Remove from the Library 11 S. Fish and Wildlife Service Biological Report 82 (11.53) NationalWetlands Research Center TR EL-82-4 June 1986 700 Cajun Dome Boulevard Lafcryette, Louisiana 70506 Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (North Atlantic) SOFTSHELL CLAM Coastal Ecology Group Fish and Wildlife Service Waterways ~xperimentStation U.S. Department of the Interior U.S. Army Corps of Engineers Biological Report 82(11.53) TR EL-82-4 June 1986 Species Profiles: Life Histories and Environmental Requirements of Coastal Fish and Invertebrates (North Atlantic) SOFTSHELL CLAM Carter R. Newel1 Maine She1 lfish Research and Development Damariscotta, ME 04543 and Herbert Hidu Department of Ani ma1 and Veterinary Sciences University of Maine Orono, ME 04469 Project Officer John Parsons National Coastal Ecosystems Team U.S. Fish and Wildlife Service 1010 Gause Boulevard Slidell, LA 70458 Performed for Coastal Ecology Group Waterways Experiment Station U.S. Army Corps of Engineers Vicksburg, MS 39180 and National .Coastal Ecosystems Team Research and Development Fish and Wildlife Service U.S. Department of the Interior Washington, DC 20240 This series should be referenced as follows: U.S. Fish and Wildlife Service. 1983-19 . Species profiles: life histories and environmental requirements of coaxal fishes and invertebrates. U. S. Fish Wildl. Serv. Biol. Rep. 82(11). U. S. Army Corps of Engineers, TR EL-82-4. This profile should be cited as follows: Newell, C.R., and H. Hidu. 1986. Species profiles: life histories and envi ronmental requi rements of coastal fishes and invertebrates (North Atlantic) -- softshell clam. -
The Global Biodiversity Information Facility (GBIF) Is a Worldwide
This PDF file contains all parts of GBIF Training Manual 1: Digitisation of Natural History Collections This book contains many hyperlinks. Most are to websites (if you are using the document offline, you will not be able to follow these). Some of the links are internal to the document (particularly in the Introduction). Î To go to a different place in the document + Mouse over a link and click to jump to the part of the book that is of interest, or + Click on the Bookmark in the bookmarks sidebar Î To return to your previous place, either * Click on its Bookmark in the bookmarks sidebar, or * Hit Alt + left arrow (or right click and select “previous view”) START HERE GBIF TRAINIING MANUAL 1: DIGITISATION OF NATURAL HISTORY COLLECTIONS DATA GBIF Training Manual 1: Digitisation of Natural History Collections Data Published by: Global Biodiversity Information Facility http://www.gbif.org © 2008, Global Biodiversity Information Facility Digitisation of Natural History Collections Data ISBN: 87‐92020‐07‐0 Permission to copy and/or distribute all or part of the information contained herein is granted, provided that such copies carry due attribution to the Global Biodiversity Information Facility (GBIF). Recommended citation: Global Biodiversity Information Facility. 2008. GBIF Training Manual 1: Digitisation of Digitisation ofNatural History Collections Data, version 1.0. Copenhagen: Global Biodiversity Information Facility. While the editor, authors and the publisher have attempted to make this book as accurate and as thorough as possible, the information contained herein is provided on an ʺAs Isʺ basis, and without any warranties with respect to its accuracy or completeness. -
Biodiversità Ed Evoluzione
Allma Mater Studiiorum – Uniiversiità dii Bollogna DOTTORATO DI RICERCA IN BIODIVERSITÀ ED EVOLUZIONE Ciclo XXIII Settore/i scientifico-disciplinare/i di afferenza: BIO - 05 A MOLECULAR PHYLOGENY OF BIVALVE MOLLUSKS: ANCIENT RADIATIONS AND DIVERGENCES AS REVEALED BY MITOCHONDRIAL GENES Presentata da: Dr Federico Plazzi Coordinatore Dottorato Relatore Prof. Barbara Mantovani Dr Marco Passamonti Esame finale anno 2011 of all marine animals, the bivalve molluscs are the most perfectly adapted for life within soft substrata of sand and mud. Sir Charles Maurice Yonge INDEX p. 1..... FOREWORD p. 2..... Plan of the Thesis p. 3..... CHAPTER 1 – INTRODUCTION p. 3..... 1.1. BIVALVE MOLLUSKS: ZOOLOGY, PHYLOGENY, AND BEYOND p. 3..... The phylum Mollusca p. 4..... A survey of class Bivalvia p. 7..... The Opponobranchia: true ctenidia for a truly vexed issue p. 9..... The Autobranchia: between tenets and question marks p. 13..... Doubly Uniparental Inheritance p. 13..... The choice of the “right” molecular marker in bivalve phylogenetics p. 17..... 1.2. MOLECULAR EVOLUTION MODELS, MULTIGENE BAYESIAN ANALYSIS, AND PARTITION CHOICE p. 23..... CHAPTER 2 – TOWARDS A MOLECULAR PHYLOGENY OF MOLLUSKS: BIVALVES’ EARLY EVOLUTION AS REVEALED BY MITOCHONDRIAL GENES. p. 23..... 2.1. INTRODUCTION p. 28..... 2.2. MATERIALS AND METHODS p. 28..... Specimens’ collection and DNA extraction p. 30..... PCR amplification, cloning, and sequencing p. 30..... Sequence alignment p. 32..... Phylogenetic analyses p. 37..... Taxon sampling p. 39..... Dating p. 43..... 2.3. RESULTS p. 43..... Obtained sequences i p. 44..... Sequence analyses p. 45..... Taxon sampling p. 45..... Maximum Likelihood p. 47..... Bayesian Analyses p. 50..... Dating the tree p.