The Impact of Hydraulic Blade Dredging on a Benthic Megafaunal Community in the Clyde Sea Area, Scotland
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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Paleoenvironmental Interpretation of Late Glacial and Post
PALEOENVIRONMENTAL INTERPRETATION OF LATE GLACIAL AND POST- GLACIAL FOSSIL MARINE MOLLUSCS, EUREKA SOUND, CANADIAN ARCTIC ARCHIPELAGO A Thesis Submitted to the College of Graduate Studies and Research in Partial Fulfillment of the Requirements for the Degree of Master of Science in the Department of Geography University of Saskatchewan Saskatoon By Shanshan Cai © Copyright Shanshan Cai, April 2006. All rights reserved. i PERMISSION TO USE In presenting this thesis in partial fulfillment of the requirements for a Postgraduate degree from the University of Saskatchewan, I agree that the Libraries of this University may make it freely available for inspection. I further agree that permission for copying of this thesis in any manner, in whole or in part, for scholarly purposes may be granted by the professor or professors who supervised my thesis work or, in their absence, by the Head of the Department or the Dean of the College in which my thesis work was done. It is understood that any copying or publication or use of this thesis or parts thereof for financial gain shall not be allowed without my written permission. It is also understood that due recognition shall be given to me and to the University of Saskatchewan in any scholarly use which may be made of any material in my thesis. Requests for permission to copy or to make other use of material in this thesis in whole or part should be addressed to: Head of the Department of Geography University of Saskatchewan Saskatoon, Saskatchewan S7N 5A5 i ABSTRACT A total of 5065 specimens (5018 valves of bivalve and 47 gastropod shells) have been identified and classified into 27 species from 55 samples collected from raised glaciomarine and estuarine sediments, and glacial tills. -
Impact of Windfarm OWEZ on the Local Macrobenthos Communiy
Impact of windfarm OWEZ on the local macrobenthos community report OWEZ_R_261_T1_20090305 R. Daan, M. Mulder, M.J.N. Bergman Koninklijk Nederlands Instituut voor Zeeonderzoek (NIOZ) This project is carried out on behalf of NoordzeeWind, through a sub contract with Wageningen-Imares Contents Summary and conclusions 3 Introduction 5 Methods 6 Results boxcore 11 Results Triple-D dredge 13 Discussion 16 References 19 Tables 21 Figures 33 Appendix 1 44 Appendix 2 69 Appendix 3 72 Photo’s by Hendricus Kooi 2 Summary and conclusions In this report the results are presented of a study on possible short‐term effects of the construction of Offshore Windfarm Egmond aan Zee (OWEZ) on the composition of the local benthic fauna living in or on top of the sediment. The study is based on a benthic survey carried out in spring 2007, a few months after completion of the wind farm. During this survey the benthic fauna was sampled within the wind farm itself and in 6 reference areas lying north and south of it. Sampling took place mainly with a boxcorer, but there was also a limited programme with a Triple‐D dredge. The occurrence of possible effects was analyzed by comparing characteristics of the macrobenthos within the wind farm with those in the reference areas. A quantitative comparison of these characteristics with those observed during a baseline survey carried out 4 years before was hampered by a difference in sampling design and methodological differences. The conclusions of this study can be summarized as follows: 1. Based on the Bray‐Curtis index for percentage similarity there appeared to be great to very great similarity in the fauna composition of OWEZ and the majority of the reference areas. -
Performance of the New England Hydraulic Dredge for the Harvest Of'stimpson~Surf Clams
PERFORMANCE OF THE NEW ENGLAND HYDRAULIC DREDGE FOR THE HARVEST OF'STIMPSON~SURF CLAMS Inv d Experimental Biology Division*. Deparhnent of Fisheries and Oceans Canada Maurice Lamontagne Instihite 850 route de la Mer f O00 Mont-Joli (~uébec) G5H 324 Canadian Industry Report of isheries and Aquatic Sciences 235 ? nadian Industry Report of Fisheries and Aquatic Sciences canaain the ~e?iaIts:Bf ramh and develotrment iradustq fof MkF irnmedia~elar Iutuw1appdkashn. They are da.r.ected pfimarbly tmard indiziduak .h $ha primary and secondary çccrors of the fishing and marine mduaries. ?i,o ratlrMhn k phced on sulbjmt mcta and the series reflects the broad inoemrs and p~2ek5&oh Department d Fisher& and Oceans. aamely. fishiesad aqwticsc+awe~,. .' 1t@u~rr5reprts m. be cimed & full pnsblicatbns. The cornkt citatian aowars . abri the abatracr of each report. Eacb rekl is a&rrxad in Awair %ie.nr& ifid . technical publicatio . Sumber;l-9li e lndustrial Devel- opsnent BranCh. Technical Reports of th. lndiausrrkf ikxelo~mentÉranch. a& - ,Tecknical Reports of the &-sk*an's Servk Branch. kumkrs 62- I tO Giztaisseed as . Dapan~enzof Fishsies and the Em-i~onment.Fisher& and Màrine Service fndustry Reports. The current ysies name kas chmgel ~ithreport number 111. lndwsrr! reports are produc& rqiortdk bur are numkred nationrtlty. Requests .for indi\ idual rqporfs w il1 be fifkd by the issuing~rqblishmentl~tcdon the front cûvw and title page. Out-of-stwk feports-will k svpplied for fw? b'J; commacia~agents. Les rapporis 4 1'indlasrrk am t knmf k résultats des acîivitis de mher&c et de diveloppern-enl qui peuvent &se utiles a I'industrie gour des applications immédiates ou fatures. -
Circular 162. the Soft-Shell Clam
HE OFT iHELL 'LAM UNITED STATES DEPARTMENT 8F THE INTERIOR FISH AND WILDLIFE SERVICE BUREAU OF COMMERCIAL FISHERIES Circular 162 CONTENTS Page 1 Intr oduc tion. • • • . 2 Natural history • . ~ . 2 Distribution. 3 Taxonomy. · . Anatomy. • • • •• . · . 3 4 Life cycle. • • • • • . • •• Predators, diseases, and parasites . 7 Fishery - methods and management .•••.••• • 9 New England area. • • • • • . • • • • • . .. 9 Chesapeake area . ........... 1 1 Special problem s of paralytic shellfish poisoning and pollution . .............. 13 Summary . .... 14 Acknowledgment s •••• · . 14 Selected bibliography •••••• 15 ABSTRACT Describes the soft- shell cla.1n industry of the Atlantic coast; reviewing past and present economic importance, fishery methods, fishery management programs, and special problems associated with shellfish culture and marketing. Provides a summary of soft- shell clam natural history in- eluding distribution, taxonomy, anatomy, and life cycle. l THE SOFT -SHELL CLAM by Robert W. Hanks Bureau of Commercial Fisheries Biological Labor ator y U.S. Fish and Wildlife Serv i c e Boothbay Harbor, Maine INTRODUCTION for s a lted c l a m s used as bait by cod fishermen on t he G r and Bank. For the next The soft-shell clam, Myaarenaria L., has 2 5 years this was the most important outlet played an important role in the history and for cla ms a nd was a sour ce of wealth to economy of the eastern coast of our country . some coastal communities . Many of the Long before the first explorers reached digg ers e a rne d up t o $10 per day in this our shores, clams were important in the busin ess during October to March, when diet of some American Indian tribes. -
(Spatangoida) Abatus Agassizii
fmicb-11-00308 February 27, 2020 Time: 15:33 # 1 ORIGINAL RESEARCH published: 28 February 2020 doi: 10.3389/fmicb.2020.00308 Characterization of the Gut Microbiota of the Antarctic Heart Urchin (Spatangoida) Abatus agassizii Guillaume Schwob1,2*, Léa Cabrol1,3, Elie Poulin1 and Julieta Orlando2* 1 Laboratorio de Ecología Molecular, Instituto de Ecología y Biodiversidad, Facultad de Ciencias, Universidad de Chile, Santiago, Chile, 2 Laboratorio de Ecología Microbiana, Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Santiago, Chile, 3 Aix Marseille University, Univ Toulon, CNRS, IRD, Mediterranean Institute of Oceanography (MIO) UM 110, Marseille, France Abatus agassizii is an irregular sea urchin species that inhabits shallow waters of South Georgia and South Shetlands Islands. As a deposit-feeder, A. agassizii nutrition relies on the ingestion of the surrounding sediment in which it lives barely burrowed. Despite the low complexity of its feeding habit, it harbors a long and twice-looped digestive tract suggesting that it may host a complex bacterial community. Here, we characterized the gut microbiota of specimens from two A. agassizii populations at the south of the King George Island in the West Antarctic Peninsula. Using a metabarcoding approach targeting the 16S rRNA gene, we characterized the Abatus microbiota composition Edited by: David William Waite, and putative functional capacity, evaluating its differentiation among the gut content Ministry for Primary Industries, and the gut tissue in comparison with the external sediment. Additionally, we aimed New Zealand to define a core gut microbiota between A. agassizii populations to identify potential Reviewed by: Cecilia Brothers, keystone bacterial taxa. -
Xoimi AMERICAN COXCIIOLOGY
S31ITnS0NIAN MISCEllANEOUS COLLECTIOXS. BIBLIOGIIAPHY XOimi AMERICAN COXCIIOLOGY TREVIOUS TO THE YEAR 18G0. PREPARED FOR THE SMITHSONIAN INSTITUTION BY . W. G. BINNEY. PART II. FOKEIGN AUTHORS. WASHINGTON: SMITHSONIAN INSTITUTION. JUNE, 1864. : ADYERTISEMENT, The first part of the Bibliography of American Conchology, prepared for the Smithsonian Institution by Mr. Binuey, was published in March, 1863, and embraced the references to de- scriptions of shells by American authors. The second part of the same work is herewith presented to the public, and relates to species of North American shells referred to by European authors. In foreign works binomial authors alone have been quoted, and no species mentioned which is not referred to North America or some specified locality of it. The third part (in an advanced stage of preparation) will in- clude the General Index of Authors, the Index of Generic and Specific names, and a History of American Conchology, together with any additional references belonging to Part I and II, that may be met with. JOSEPH HENRY, Secretary S. I. Washington, June, 1864. (" ) PHILADELPHIA COLLINS, PRINTER. CO]^TENTS. Advertisement ii 4 PART II.—FOREIGN AUTHORS. Titles of Works and Articles published by Foreign Authors . 1 Appendix II to Part I, Section A 271 Appendix III to Part I, Section C 281 287 Appendix IV .......... • Index of Authors in Part II 295 Errata ' 306 (iii ) PART II. FOEEIGN AUTHORS. ( V ) BIBLIOGRxVPHY NOETH AMERICAN CONCHOLOGY. PART II. Pllipps.—A Voyage towards the North Pole, &c. : by CON- STANTiNE John Phipps. Loudou, ITTJc. Pa. BIBLIOGRAPHY OF [part II. FaliricillS.—Fauna Grcenlandica—systematice sistens ani- malia GrcEulandite occidentalis liactenus iudagata, &c., secun dum proprias observatioues Othonis Fabricii. -
Spatial Variability in Recruitment of an Infaunal Bivalve
Spatial Variability in Recruitment of an Infaunal Bivalve: Experimental Effects of Predator Exclusion on the Softshell Clam (Mya arenaria L.) along Three Tidal Estuaries in Southern Maine, USA Author(s): Brian F. Beal, Chad R. Coffin, Sara F. Randall, Clint A. Goodenow Jr., Kyle E. Pepperman, Bennett W. Ellis, Cody B. Jourdet and George C. Protopopescu Source: Journal of Shellfish Research, 37(1):1-27. Published By: National Shellfisheries Association https://doi.org/10.2983/035.037.0101 URL: http://www.bioone.org/doi/full/10.2983/035.037.0101 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Journal of Shellfish Research, Vol. 37, No. 1, 1–27, 2018. SPATIAL VARIABILITY IN RECRUITMENT OF AN INFAUNAL BIVALVE: EXPERIMENTAL EFFECTS OF PREDATOR EXCLUSION ON THE SOFTSHELL CLAM (MYA ARENARIA L.) ALONG THREE TIDAL ESTUARIES IN SOUTHERN MAINE, USA 1,2 3 2 3 BRIAN F. -
Processing of 13C-Labelled Phytoplankton in a Fine-Grained Sandy-Shelf Sediment (North Sea): Relative Importance of Different Macrofauna Species
MARINE ECOLOGY PROGRESS SERIES Vol. 297: 61–70, 2005 Published August 1 Mar Ecol Prog Ser Processing of 13C-labelled phytoplankton in a fine-grained sandy-shelf sediment (North Sea): relative importance of different macrofauna species Anja Kamp1, 2,*, Ursula Witte1, 3 1Max Planck Institute for Marine Microbiology, Celsiusstr. 1, 28359 Bremen, Germany 2Present address: Institute for Microbiology, University of Hannover, Schneiderberg 50, 30167 Hannover, Germany 3Present address: Oceanlab, University of Aberdeen, Newburgh, Aberdeen AB41 6AA, UK ABSTRACT: On-board and in situ experiments with 13C-labelled diatoms were carried out to inves- tigate the processing of algal carbon by the macrofauna community of a fine sandy-shelf site in the southern German Bight (North Sea). The time series (12, 30, 32 and 132 h incubations) was supple- mented by additional laboratory experiments on the role of the dominant macrofauna organism, the bivalve Fabulina fabula (Bivalvia: Tellinidae), for particulate organic matter subduction to deeper sediment layers. The specific uptake of algal 13C by macrofauna organisms was visible after 12 h and constantly increased during the incubation periods. F. fabula, a facultative (surface) deposit- and suspension-feeder, Lanice conchilega (Polychaeta: Terebellidae), a suspension-feeder and the (sur- face) deposit-feeder Echinocardium cordatum (Echinodermata: Spatangidae) were responsible for the majority of macrofaunal carbon processing. Predatory macrofauna organisms like Nephtys spp. (Polychaeta: Nephtyidae) also quickly became labelled. The rapid subduction of fresh organic matter by F. fabula down to ca. 4 to 7 cm sediment depth could be demonstrated, and it is suggested that entrainment by macrofauna in this fine-grained sand is much more efficient than advective transport. -
Mining the Transcriptomes of Four Commercially Important Shellfish
Marine Genomics 27 (2016) 17–23 Contents lists available at ScienceDirect Marine Genomics Cells to Shells: The genomics of mollusc exoskeletons Mining the transcriptomes of four commercially important shellfish species for single nucleotide polymorphisms within biomineralization genes David L.J. Vendrami a,⁎, Abhijeet Shah a,LucaTelescab,JosephI.Hoffmana a Department of Animal Behaviour, University of Bielefeld, Postfach 100131, 33501 Bielefeld, Germany b Department of Earth Sciences, University of Cambridge, Downing Street, Cambridge, Cambridgeshire CB2 3EQ, UK article info abstract Article history: Transcriptional profiling not only provides insights into patterns of gene expression, but also generates sequences Received 8 October 2015 that can be mined for molecular markers, which in turn can be used for population genetic studies. As part of a Received in revised form 17 December 2015 large-scale effort to better understand how commercially important European shellfish species may respond to Accepted 23 December 2015 ocean acidification, we therefore mined the transcriptomes of four species (the PacificoysterCrassostrea gigas, Available online 21 January 2016 the blue mussel Mytilus edulis, the great scallop Pecten maximus and the blunt gaper Mya truncata)forsinglenu- Keywords: cleotide polymorphisms (SNPs). Illumina data for C. gigas, M. edulis and P. maximus and 454 data for M. truncata Crassostrea gigas were interrogated using GATK and SWAP454 respectively to identify between 8267 and 47,159 high quality SNPs Mya truncata per species (total = 121,053 SNPs residing within 34,716 different contigs). We then annotated the transcripts Mytilus edulis containing SNPs to reveal homology to diverse genes. Finally, as oceanic pH affects the ability of organisms to in- Pecten maximus corporate calcium carbonate, we honed in on genes implicated in the biomineralization process to identify a total Non-model organism of 1899 SNPs in 157 genes. -
National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
National monitoring program for biodiversity and non-indigenous species in Egypt January 2016 1 TABLE OF CONTENTS page Acknowledgements 3 Preamble 4 Chapter 1: Introduction 8 Overview of Egypt Biodiversity 37 Chapter 2: Institutional and regulatory aspects 39 National Legislations 39 Regional and International conventions and agreements 46 Chapter 3: Scientific Aspects 48 Summary of Egyptian Marine Biodiversity Knowledge 48 The Current Situation in Egypt 56 Present state of Biodiversity knowledge 57 Chapter 4: Development of monitoring program 58 Introduction 58 Conclusions 103 Suggested Monitoring Program Suggested monitoring program for habitat mapping 104 Suggested marine MAMMALS monitoring program 109 Suggested Marine Turtles Monitoring Program 115 Suggested Monitoring Program for Seabirds 117 Suggested Non-Indigenous Species Monitoring Program 121 Chapter 5: Implementation / Operational Plan 128 Selected References 130 Annexes 141 2 AKNOWLEGEMENTS 3 Preamble The Ecosystem Approach (EcAp) is a strategy for the integrated management of land, water and living resources that promotes conservation and sustainable use in an equitable way, as stated by the Convention of Biological Diversity. This process aims to achieve the Good Environmental Status (GES) through the elaborated 11 Ecological Objectives and their respective common indicators. Since 2008, Contracting Parties to the Barcelona Convention have adopted the EcAp and agreed on a roadmap for its implementation. First phases of the EcAp process led to the accomplishment of 5 steps of the scheduled 7-steps process such as: 1) Definition of an Ecological Vision for the Mediterranean; 2) Setting common Mediterranean strategic goals; 3) Identification of an important ecosystem properties and assessment of ecological status and pressures; 4) Development of a set of ecological objectives corresponding to the Vision and strategic goals; and 5) Derivation of operational objectives with indicators and target levels. -
MOLLUSCS Species Names – for Consultation 1
MOLLUSCS species names – for consultation English name ‘Standard’ Gaelic name Gen Scientific name Notes Neologisms in italics der MOLLUSC moileasg m MOLLUSCS moileasgan SEASHELL slige mhara f SEASHELLS sligean mara SHELLFISH (singular) maorach m SHELLFISH (plural) maoraich UNIVALVE SHELLFISH aon-mhogalach m (singular) UNIVALVE SHELLFISH aon-mhogalaich (plural) BIVALVE SHELLFISH dà-mhogalach m (singular) BIVALVE SHELLFISH dà-mhogalaich (plural) LIMPET (general) bàirneach f LIMPETS bàirnich common limpet bàirneach chumanta f Patella vulgata ‘common limpet’ slit limpet bàirneach eagach f Emarginula fissura ‘notched limpet’ keyhole limpet bàirneach thollta f Diodora graeca ‘holed limpet’ china limpet bàirneach dhromanach f Patella ulyssiponensis ‘ridged limpet’ blue-rayed limpet copan Moire m Patella pellucida ‘The Virgin Mary’s cup’ tortoiseshell limpet bàirneach riabhach f Testudinalia ‘brindled limpet’ testudinalis white tortoiseshell bàirneach bhàn f Tectura virginea ‘fair limpet’ limpet TOP SHELL brùiteag f TOP SHELLS brùiteagan f painted top brùiteag dhotamain f Calliostoma ‘spinning top shell’ zizyphinum turban top brùiteag thurbain f Gibbula magus ‘turban top shell’ grey top brùiteag liath f Gibbula cineraria ‘grey top shell’ flat top brùiteag thollta f Gibbula umbilicalis ‘holed top shell’ pheasant shell slige easaig f Tricolia pullus ‘pheasant shell’ WINKLE (general) faochag f WINKLES faochagan f banded chink shell faochag chlaiseach bhannach f Lacuna vincta ‘banded grooved winkle’ common winkle faochag chumanta f Littorina littorea ‘common winkle’ rough winkle (group) faochag gharbh f Littorina spp. ‘rough winkle’ small winkle faochag bheag f Melarhaphe neritoides ‘small winkle’ flat winkle (2 species) faochag rèidh f Littorina mariae & L. ‘flat winkle’ 1 MOLLUSCS species names – for consultation littoralis mudsnail (group) seilcheag làthaich f Fam.