THE SUBLITTORAL FAUNA of TWO SANDY BAYS on the ISLE of CUMBRAE, FIRTH of CLYDE by R
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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Impact of Windfarm OWEZ on the Local Macrobenthos Communiy
Impact of windfarm OWEZ on the local macrobenthos community report OWEZ_R_261_T1_20090305 R. Daan, M. Mulder, M.J.N. Bergman Koninklijk Nederlands Instituut voor Zeeonderzoek (NIOZ) This project is carried out on behalf of NoordzeeWind, through a sub contract with Wageningen-Imares Contents Summary and conclusions 3 Introduction 5 Methods 6 Results boxcore 11 Results Triple-D dredge 13 Discussion 16 References 19 Tables 21 Figures 33 Appendix 1 44 Appendix 2 69 Appendix 3 72 Photo’s by Hendricus Kooi 2 Summary and conclusions In this report the results are presented of a study on possible short‐term effects of the construction of Offshore Windfarm Egmond aan Zee (OWEZ) on the composition of the local benthic fauna living in or on top of the sediment. The study is based on a benthic survey carried out in spring 2007, a few months after completion of the wind farm. During this survey the benthic fauna was sampled within the wind farm itself and in 6 reference areas lying north and south of it. Sampling took place mainly with a boxcorer, but there was also a limited programme with a Triple‐D dredge. The occurrence of possible effects was analyzed by comparing characteristics of the macrobenthos within the wind farm with those in the reference areas. A quantitative comparison of these characteristics with those observed during a baseline survey carried out 4 years before was hampered by a difference in sampling design and methodological differences. The conclusions of this study can be summarized as follows: 1. Based on the Bray‐Curtis index for percentage similarity there appeared to be great to very great similarity in the fauna composition of OWEZ and the majority of the reference areas. -
The Impact of Hydraulic Blade Dredging on a Benthic Megafaunal Community in the Clyde Sea Area, Scotland
Journal of Sea Research 50 (2003) 45–56 www.elsevier.com/locate/seares The impact of hydraulic blade dredging on a benthic megafaunal community in the Clyde Sea area, Scotland C. Hauton*, R.J.A. Atkinson, P.G. Moore University Marine Biological Station Millport (UMBSM), Isle of Cumbrae, Scotland, KA28 0EG, UK Received 4 December 2002; accepted 13 February 2003 Abstract A study was made of the impacts on a benthic megafaunal community of a hydraulic blade dredge fishing for razor clams Ensis spp. within the Clyde Sea area. Damage caused to the target species and the discard collected by the dredge as well as the fauna dislodged by the dredge but left exposed at the surface of the seabed was quantified. The dredge contents and the dislodged fauna were dominated by the burrowing heart urchin Echinocardium cordatum, approximately 60–70% of which survived the fishing process intact. The next most dominant species, the target razor clam species Ensis siliqua and E. arcuatus as well as the common otter shell Lutraria lutraria, did not survive the fishing process as well as E. cordatum, with between 20 and 100% of individuals suffering severe damage in any one dredge haul. Additional experiments were conducted to quantify the reburial capacity of dredged fauna that was returned to the seabed as discard. Approximately 85% of razor clams retained the ability to rapidly rebury into both undredged and dredged sand, as did the majority of those heart urchins Echinocardium cordatum which did not suffer aerial exposure. Individual E. cordatum which were brought to surface in the dredge collecting cage were unable to successfully rebury within three hours of being returned to the seabed. -
(Spatangoida) Abatus Agassizii
fmicb-11-00308 February 27, 2020 Time: 15:33 # 1 ORIGINAL RESEARCH published: 28 February 2020 doi: 10.3389/fmicb.2020.00308 Characterization of the Gut Microbiota of the Antarctic Heart Urchin (Spatangoida) Abatus agassizii Guillaume Schwob1,2*, Léa Cabrol1,3, Elie Poulin1 and Julieta Orlando2* 1 Laboratorio de Ecología Molecular, Instituto de Ecología y Biodiversidad, Facultad de Ciencias, Universidad de Chile, Santiago, Chile, 2 Laboratorio de Ecología Microbiana, Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Santiago, Chile, 3 Aix Marseille University, Univ Toulon, CNRS, IRD, Mediterranean Institute of Oceanography (MIO) UM 110, Marseille, France Abatus agassizii is an irregular sea urchin species that inhabits shallow waters of South Georgia and South Shetlands Islands. As a deposit-feeder, A. agassizii nutrition relies on the ingestion of the surrounding sediment in which it lives barely burrowed. Despite the low complexity of its feeding habit, it harbors a long and twice-looped digestive tract suggesting that it may host a complex bacterial community. Here, we characterized the gut microbiota of specimens from two A. agassizii populations at the south of the King George Island in the West Antarctic Peninsula. Using a metabarcoding approach targeting the 16S rRNA gene, we characterized the Abatus microbiota composition Edited by: David William Waite, and putative functional capacity, evaluating its differentiation among the gut content Ministry for Primary Industries, and the gut tissue in comparison with the external sediment. Additionally, we aimed New Zealand to define a core gut microbiota between A. agassizii populations to identify potential Reviewed by: Cecilia Brothers, keystone bacterial taxa. -
RECON: Reef Effect Structures in the North Sea, Islands Or Connections?
RECON: Reef effect structures in the North Sea, islands or connections? Summary Report Authors: Coolen, J.W.P. & R.G. Jak (eds.). Wageningen University & Research Report C074/17A RECON: Reef effect structures in the North Sea, islands or connections? Summary Report Revised Author(s): Coolen, J.W.P. & R.G. Jak (eds.). With contributions from J.W.P. Coolen, B.E. van der Weide, J. Cuperus, P. Luttikhuizen, M. Schutter, M. Dorenbosch, F. Driessen, W. Lengkeek, M. Blomberg, G. van Moorsel, M.A. Faasse, O.G. Bos, I.M. Dias, M. Spierings, S.G. Glorius, L.E. Becking, T. Schol, R. Crooijmans, A.R. Boon, H. van Pelt, F. Kleissen, D. Gerla, R.G. Jak, S. Degraer, H.J. Lindeboom Publication date: January 2018 Wageningen Marine Research Den Helder, January 2018 Wageningen Marine Research report C074/17A Coolen, J.W.P. & R.G. Jak (eds.) 2017. RECON: Reef effect structures in the North Sea, islands or connections? Summary Report Wageningen, Wageningen Marine Research, Wageningen Marine Research report C074/17A. 33 pp. Client: INSITE joint industry project Attn.: Richard Heard 6th Floor East, Portland House, Bressenden Place London SW1E 5BH, United Kingdom This report can be downloaded for free from https://doi.org/10.18174/424244 Wageningen Marine Research provides no printed copies of reports Wageningen Marine Research is ISO 9001:2008 certified. Photo cover: Udo van Dongen. © 2017 Wageningen Marine Research Wageningen UR Wageningen Marine Research The Management of Wageningen Marine Research is not responsible for resulting institute of Stichting Wageningen damage, as well as for damage resulting from the application of results or Research is registered in the Dutch research obtained by Wageningen Marine Research, its clients or any claims traderecord nr. -
Processing of 13C-Labelled Phytoplankton in a Fine-Grained Sandy-Shelf Sediment (North Sea): Relative Importance of Different Macrofauna Species
MARINE ECOLOGY PROGRESS SERIES Vol. 297: 61–70, 2005 Published August 1 Mar Ecol Prog Ser Processing of 13C-labelled phytoplankton in a fine-grained sandy-shelf sediment (North Sea): relative importance of different macrofauna species Anja Kamp1, 2,*, Ursula Witte1, 3 1Max Planck Institute for Marine Microbiology, Celsiusstr. 1, 28359 Bremen, Germany 2Present address: Institute for Microbiology, University of Hannover, Schneiderberg 50, 30167 Hannover, Germany 3Present address: Oceanlab, University of Aberdeen, Newburgh, Aberdeen AB41 6AA, UK ABSTRACT: On-board and in situ experiments with 13C-labelled diatoms were carried out to inves- tigate the processing of algal carbon by the macrofauna community of a fine sandy-shelf site in the southern German Bight (North Sea). The time series (12, 30, 32 and 132 h incubations) was supple- mented by additional laboratory experiments on the role of the dominant macrofauna organism, the bivalve Fabulina fabula (Bivalvia: Tellinidae), for particulate organic matter subduction to deeper sediment layers. The specific uptake of algal 13C by macrofauna organisms was visible after 12 h and constantly increased during the incubation periods. F. fabula, a facultative (surface) deposit- and suspension-feeder, Lanice conchilega (Polychaeta: Terebellidae), a suspension-feeder and the (sur- face) deposit-feeder Echinocardium cordatum (Echinodermata: Spatangidae) were responsible for the majority of macrofaunal carbon processing. Predatory macrofauna organisms like Nephtys spp. (Polychaeta: Nephtyidae) also quickly became labelled. The rapid subduction of fresh organic matter by F. fabula down to ca. 4 to 7 cm sediment depth could be demonstrated, and it is suggested that entrainment by macrofauna in this fine-grained sand is much more efficient than advective transport. -
National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
National monitoring program for biodiversity and non-indigenous species in Egypt January 2016 1 TABLE OF CONTENTS page Acknowledgements 3 Preamble 4 Chapter 1: Introduction 8 Overview of Egypt Biodiversity 37 Chapter 2: Institutional and regulatory aspects 39 National Legislations 39 Regional and International conventions and agreements 46 Chapter 3: Scientific Aspects 48 Summary of Egyptian Marine Biodiversity Knowledge 48 The Current Situation in Egypt 56 Present state of Biodiversity knowledge 57 Chapter 4: Development of monitoring program 58 Introduction 58 Conclusions 103 Suggested Monitoring Program Suggested monitoring program for habitat mapping 104 Suggested marine MAMMALS monitoring program 109 Suggested Marine Turtles Monitoring Program 115 Suggested Monitoring Program for Seabirds 117 Suggested Non-Indigenous Species Monitoring Program 121 Chapter 5: Implementation / Operational Plan 128 Selected References 130 Annexes 141 2 AKNOWLEGEMENTS 3 Preamble The Ecosystem Approach (EcAp) is a strategy for the integrated management of land, water and living resources that promotes conservation and sustainable use in an equitable way, as stated by the Convention of Biological Diversity. This process aims to achieve the Good Environmental Status (GES) through the elaborated 11 Ecological Objectives and their respective common indicators. Since 2008, Contracting Parties to the Barcelona Convention have adopted the EcAp and agreed on a roadmap for its implementation. First phases of the EcAp process led to the accomplishment of 5 steps of the scheduled 7-steps process such as: 1) Definition of an Ecological Vision for the Mediterranean; 2) Setting common Mediterranean strategic goals; 3) Identification of an important ecosystem properties and assessment of ecological status and pressures; 4) Development of a set of ecological objectives corresponding to the Vision and strategic goals; and 5) Derivation of operational objectives with indicators and target levels. -
882 NATURE S
882 NATURE November 19, 1949 Vol. 164 tial spring tides. From an examination of living IN reply to Prof. Graham Cannon, I neither stated material, the animal was identified as S. cambrensis at the British Association, nor have I ever held, Brambell and Cole, only minor differences in colora that all characters must possess 'selection value': tion being apparent. Mr. Burdon Jones, who is precisely the contrary, since I took some care to working on the group, has seen preserved specimens explain that the spread of non-adaptive characters, and agrees with this identification. which certainly exist, cannot be responsible for It is of great interest that S. cambrensis should be evolution in wild populations. At the same time I found at Dale Fort, thus supporting the view of pointed out the danger of stating that any particular Brambell and Cole that the species might prove to character is non-adaptive, since even a I per cent be widely distributed. At Dale Fort it occurs advantage can rarely be detectable by the most in an environment similar to that described by accurate experiments, though it is considerable from Brambell and Cole, with a few minor differences an evolutionary point of view. It is genes, not which are worthy of note. The beds are at and below characters, that must very seldom be of neutral chart datum and are inaccessible during many months survival value. That is by no means to say that they of the year. Soil analysis of the surface two inches of are never so, but, as stressed at the meeting, such sand from adjacent parts of the beach have indicated genes cannot spread in a semi-isolated population in general about 95 per cent of fine sand and only so as to produce the 'Sewall Wright effect' unless it small quantities of silt, clay and organic matter. -
An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department. -
Validation Des Caractéristiques Biologiques Et Fonctionnelles Des Communautés Benthiques Associées À Des Habitats Côtiers Dans L’Arctique Canadien
Validation des caractéristiques biologiques et fonctionnelles des communautés benthiques associées à des habitats côtiers dans l’Arctique canadien Mémoire présenté dans le cadre du programme de maîtrise en océanographie en vue de l’obtention du grade de maître ès sciences (M.Sc.) PAR © Valérie Cypihot Octobre 2018 ii iii Composition du jury : Gesche Winkler, présidente du jury, UQAR-ISMER Philippe Archambault, directeur de recherche, Université Laval Kimberly L. Howland, codirectrice de recherche, Fisheries and Oceans Canada Mathieu Cusson, examinateur externe, Université du Québec à Chicoutimi Dépôt initial le 19 juin 2018 Dépôt final le 18 octobre 2018 iv v UNIVERSITÉ DU QUÉBEC À RIMOUSKI Service de la bibliothèque Avertissement La diffusion de ce mémoire ou de cette thèse se fait dans le respect des droits de son auteur, qui a signé le formulaire « Autorisation de reproduire et de diffuser un rapport, un mémoire ou une thèse ». En signant ce formulaire, l’auteur concède à l’Université du Québec à Rimouski une licence non exclusive d’utilisation et de publication de la totalité ou d’une partie importante de son travail de recherche pour des fins pédagogiques et non commerciales. Plus précisément, l’auteur autorise l’Université du Québec à Rimouski à reproduire, diffuser, prêter, distribuer ou vendre des copies de son travail de recherche à des fins non commerciales sur quelque support que ce soit, y compris l’Internet. Cette licence et cette autorisation n’entraînent pas une renonciation de la part de l’auteur à ses droits moraux ni à ses droits de propriété intellectuelle. Sauf entente contraire, l’auteur conserve la liberté de diffuser et de commercialiser ou non ce travail dont il possède un exemplaire. -
Offshore Spread and Toxic Effects of Detergents Sprayed on Shores
CHAPTER 6 OFFSHORE SPREAD AND TOXIC EFFECTS OF DETERGENTS SPRAYED ON SHORES The shore surveys reported in the previous chapter have shown that detergent cleansing of rocks and sands causes extensive damage to, and often total destruction of, the populations of intertidal plants and animals in and immediately adjacent to areas of intensive spraying. There was also evidence that, as a result of movements of toxic water, organisms living a quarter of a mile or more from the area of spraying may be damaged or killed .. It seemed important therefore to investigate in greater detail the patterns of flow of shore-originating polluted water under different conditions of wind and tide; the concentration and persistence of the component deter• gent fractions; and their possible effects on organisms living in the off• shore waters. The investigations were undertaken during the month of April by teams working mainly in the Porthleven (South Cornwall) area. The teams, comprising shore-based parties and underwater divers, were aided by a ship survey (R.V. 'Sarsia' inshore stations A-M of 13 April, see Fig. 19) which included Agassiz-trawl sampling of the offshore benthic fauna. Laboratory measurements were made of the concentration of the component fractions of detergents present in the area of long-shore and offshore spread of the detergent-charged water. Oil reached PORTHLEVENon 25 March in considerable quantities during a period of spring tides and onshore winds so that in some places it was distributed well above the high-water mark. Very large amounts of deter• gent were subsequently used to combat the oil. -
Sequences of Mitochondrial DNA Suggest That Echinocardium Cordatum Is a Complex of Several Sympatric Or Hybridizing Species: a Pilot Study
Echinoderm Research 2001, Fral David (eds.) O 2003 Swets Zeitlinger, Lisse, ISBN 90 5809 528 2 Sequences of mitochondrial DNA suggest that Echinocardium cordatum is a complex of several sympatric or hybridizing species: A pilot study A. Chenuil & J.-P Féral Observatoire Océanologique, Banyuls-sur-mer, France ABSTRACT: Sequence data from the 16S ribosomal gene of the mitochondrial genome were obtained for 10 individuals of the irregular sea urchin Echinocardium cordatum (Pennant 1777) [Loveniidae, Spatangoida], with one individual of Echinocardium flavescens (O.F. Müller, 1776) as an outgroup, plus one individual of Abatus cordatus (Verrill, 1876) [Schizasteridae, Spatangoida] as a more distant outgroup. Eighteen additional individuals were analysed for their Taa 1 restriction digestion profile at the same locus. This preliminary data set gave unexpected results. Eight different E. cordatum haplotypes were found and their phylogenetic relation- ships were established. They form two well supported monophyletic groups, clades A and B. Haplotypes of Glade A were found only in the samples from the Atlantic ocean, whereas haplotypes of Glade B were found in both Mediterranean and Atlantic locations. A and B haplotypes are found sympatrically in an Atlantic sample. Clade B can be divided in Glade B1 (two haplotypes) and Glade B2 (four haplotypes). Using fossil evidence within the genus Echinocardium, we inferred that more than six million years separate clades A and B, and more than two million years separate clades B 1 and B2. These large divergence times, the absence of haplotypes dis- playing nucleotide sequences intermediate between these groups of haplotypes, and the reduced divergence within each Glade suggest that they belong to different taxa, which were probably geographically separated in the past.