International Journal of Universal Pharmacy and Bio Sciences 2(1): January-February 2013 INTERNATIONAL JOURNAL of UNIVERSAL PHARMACY and BIO SCIENCES

Total Page:16

File Type:pdf, Size:1020Kb

International Journal of Universal Pharmacy and Bio Sciences 2(1): January-February 2013 INTERNATIONAL JOURNAL of UNIVERSAL PHARMACY and BIO SCIENCES International Standard Serial Number (ISSN): 2319-8141 International Journal of Universal Pharmacy and Bio Sciences 2(1): January-February 2013 INTERNATIONAL JOURNAL OF UNIVERSAL PHARMACY AND BIO SCIENCES Bio Sciences Research Article……!!! Received: 21-02-2013; Accepted: 23-02-2013 BENCH SCALE PRODUCTION OF PHENYLACETIC ACID USING ALCALIGENES SP. MTCC 10675 Bhatia S.K, Kumar D, Bhatia R.K and Bhalla T.C* Department of Biotechnology, Himachal Pradesh University, Summer Hill, Shimla- 171005 (India). ABSTRACT KEYWORDS: The intracellular nitrilase of Alcaligenes sp. MTCC 10675 has Arylacetonitrilase, exhibited very high arylacetonitrilase activity and it has been Biotransformation, explored for the biotransformation of phenylacetonitrile in to a Phenylacetonitrile, pharmaceutical important compound phenylacetic acid. This Phenylacetic Acid. enzyme has maximum activity at pH 6.5 and 45 ºC. However the For Correspondence: enzyme was stable at 35 ºC for 16.9 h. Phenylacetonitrile Bhalla T.C* hydrolyzing activity of Alcaligenes sp. MTCC 10675 decrease up Address: Department of to 91.6 % at 55 ºC. Vmax and Km value for phenylacetonitrile as Biotechnology, Himachal - - substrate were respectively 0.34 µmol emg min and 28 mM. The Pradesh University, 0.47 U resting cell showed full conversion of 40 mM Summer Hill, Shimla- 171005 (India). phenylacetonitrile into phenylacetic acid in 80 min. Fed batch reaction at 1L scale having 200 mM phenylacetonitrile as substrate Tel: +91-177-2831948, added in five feeds resulted into 5.0 gg-dcw phenylacetic acid with Fax: +91-177-2831954. catalytic productivity of 0.75 gh-g-dcw. 16 Full Text Available On www.ijupbs.com International Standard Serial Number (ISSN): 2319-8141 1. INTRODUCTION : Nitriles are organic cyanides, containing –C≡N group and are widespread in nature and used by a large number of industries as organic solvents, herbicides, organic feed stocks, extractants, recrystallizing agents, precursors in the synthesis of plastics, synthetic fibers, resin, dye stuffs, emulsifiers and pharmaceuticals [1,2]. Nitrilases (nitrile aminohydrolases, EC 3.5.5.1) catalyses the hydrolysis of triple bond of cyano group (-C≡N) of nitriles to form corresponding carboxylic acids. This enzyme is distributed in microbes (bacteria, cyanobacteria and fungi), plants and animals. The nitrilases are capable of hydrolysing various aliphatic/aromatic nitriles, arylacetonitriles, aminonitriles and hydroxynitriles at physiological pH and temperature [3-5]. In recent years some of the fine chemicals of pharmaceutical importance are being commercially produced using nitrile hydrolysing enzymes e.g. α-hydroxyisobutyric acid, phenyl acetic acid (PAA), (R)-mandelic acid, (R)-4-cyano-3-hydroxybutyric acid and (S)- ibuprofen from their corresponding nitriles [3,6,7]. PAA is one of the important organic acid, which is widely used in the field of medicine, pesticide and aromatizer [8]. Its derivatives are valuable intermediates in the manufacture of pharmaceuticals and cosmetics [9]. It had also exhibits antimicrobial activity [10] and is used as important constituent of medium or reaction for the synthesis penicillin G salt [11] and for making phenobarbital, primidone, pesticide and fungicide (3-chlorophenylacetic acid and rodenticide). Phenylacetic acid esters are also used as flavouring agents in food industries and in cosmetics. In medicine, phenylacetic acid esters have been used for the synthesis of isochromanes which exhibit a wide variety of pharmacological activities [12]. PAA is the major metabolite of phenylethylamine, a "trace amine" which has become the focus of considerable clinical attention [13]. Chemically phenylacetic acid is synthesized by various methods i.e. cyanobenzyl hydrolysis, phenylacetamide hydrolysis, electrochemical process, carbonyl process [8]. These routes requires harsh conditions either alkali/acid treatment or requirement of very high temperature, pressure and expensive catalysts. In contrast to the chemical routes, the enzymatic processes for the synthesis of industrially important chemicals are gaining importance. Mild reaction conditions, ease of biocatalyst production and stereoselective transformation are the main advantages of the enzyme based processes. Keeping in view the wide applications of phenylacetic acid, a bench scale process for the conversion of phenylacetonitrile into phenylacetic acid using resting cell of Alcaligenes sp. MTCC 10675 has developed in the present study. Full Text Available On www.ijupbs.com 17 International Standard Serial Number (ISSN): 2319-8141 2. MATERIAL AND METHODS: 2.1 Chemicals: Isobutyronitrile and phenylacetonitrile were purchased from Alfa Aesar, Johnson Matthey Company (previously Lanchaster Synthesis). Media components were obtained from Hi- Media (Mumbai, India). All other chemicals used were of analytical grade and procured from standard companies. 2.2 Preparation of resting cells: Alcaligenes sp. MTCC 10675 has been used as source of nitrilase. The bacterium was routinely sub cultured on nutrient agar slants at 30°C and maintained at 4°C. A loopfull of bacterial cells of Alcaligenes sp. MTCC 10675 from the slant was inoculated in 50 ml of seed medium containing (per litre) 25 g nutrient broth L-, and incubated at 30°C for 18 h in an incubater shaker (160 rpm). One milliliter of 18 h preculture was added into 50 ml of nitrilase production medium containing 5 g peptone, 3 g yeast extract and 3 g malt extract L- supplemented with 0.3% (v/v) isobutyronitrile in 250 ml Erlenmeyer flask and incubated at 30°C for 24 h in an incubator shaker at 160 rpm. The cells from the culture were harvested by centrifugation at 10,000 g for 10 min at 4°C washed with 0.1 M sodium phosphate buffer (6.5 pH) and resuspended in the same buffer. 2.3 Nitrilase assay: The nitrilase assay was carried out in a reaction mixture (1.0 ml) containing 0.1 M NaH2PO4/Na2HPO4 buffer (pH 6.5), 50 mM nitrile and resting cells at 30˚C. After 60 min of incubation, reaction was stopped with equal volume of 0.1 N HCl. The amount of ammonia released in the reaction mixture was estimated calorimetrically through a phenate- hypochlorite method [14]. One unit of nitrilase activity was defined as that amount of enzyme which catalysed the release of one micromole of ammonia per min by the hydrolysis of phenylacetonitrile under assay conditions. 2.4 Optimization of reaction conditions: 2.4.1 Buffer pH and molarity To study the effect of buffer systems and pH on the nitrilase activity, various buffers were screened e.g. citrate buffer (pH 4.0-6.0), sodium phosphate buffer (pH 6.0-8.0), potassium phosphate buffer (pH 6.5-8.0), borate buffer (pH 7.5-9.0), sodium carbonate buffer (pH 9.5- 10.5). Molarity of selected buffer was further varied from 25 mM to 150 mM to select optimum strength of buffer. Full Text Available On www.ijupbs.com 18 International Standard Serial Number (ISSN): 2319-8141 2.4.2 Substrate concentration and incubation temperature Different concentrations of phenylacetonitrile were used (10 mM to 100 mM) in potassium phosphate buffer to study the effect of substrate concentration on nitrilase activity. To find out the optimum temperature of nitrilase the enzyme activity was estimated at different temperature from 25°C to 55°C. 2.5 Biocatalyst amount In order to work out the optimum amount of biocatalyst for hydrolysis of phenylacetonitrile the resting cells ranging from 3 mg to 28 mg dcw/ml were used in the reaction. 2.6 Time course of incubation The optimization of reaction time at 45°C was investigated by terminating the reaction after 5, 10, 15, 30, 60, 80, 100 and 120 min. 2.7 Stability of enzyme To evaluate the stability of enzyme, resting cell suspension were incubated at different temperature (25ºC, 35ºC, 45ºC and 55ºC) up to 10 h and the enzyme activity was assayed after an interval of one hour. 2.8 Effect of substrate on the activity of nitrilase Alcaligenes sp. MTCC 10675 The effect of substrate concentration on the activity of nitrilase was studied by adding different concentrations of phenylacetonitrile (20mM-80mM) in the reaction. 2.9 Bench scale production of phenylacetic acid The resting cells of Alcaligenes sp. MTCC 10675 were used for the development of bioprocess for the production of phenylacetic acid at bench scale. 2.10 Time course of phenylacetonitrile conversion To achieve 100% conversion of the substrate (40 mM phenylacetonitrile) to product (phenylacetic acid) the reaction mixture at 100 ml scale was incubated at 35°C for about 150 min by using resting cells and samples were withdrawn after every 10 min for HPLC analysis. 2.11 Fed batch reaction at 100 ml To achieve maximum product formation 40 mM of phenylacetonitrile was added at zero time and subsequent feedings were made at an interval of 80 min in 250 ml conical flask containing 100 ml of the reaction mixture. 2.12 Bench scale at 1L scale On the basis of results at 100 ml, the conversion of phenylacetonitrile to phenylacetic acid was scaled up to 1L and carried out in a bio-flow C-32 fermenter (New Brunswick Scientific, U.S.A.). The initial reaction contained potassium phosphate buffer (pH 6.5, 100 mM), 470 U Full Text Available On www.ijupbs.com 19 International Standard Serial Number (ISSN): 2319-8141 (1.8 g resting cell) and 40 mM phenylacetonitrile was added in each feed. The temperature of the vessel was maintained at 35°C and the impeller speed was set to 160 rpm. At the end of reaction, the cells were separated by centrifugation at 6000g and phenyl acetic acid was recovered from the supernatant by using diethyl ether as solvent. Lypholization (Flexi-Dry TMFTS systems, Stone Ridge, New York, USA) and vaccum drying of reaction supernatant was done to dry the phenyl acetic acid formed in the reaction. 3. RESULTS AND DISCUSSION: Optimization of reaction condition Buffer pH and molarity: Optimum phenylacetonitrile hydrolyzing activity (0.25 U/mg dcw) of Alcaligenes sp.
Recommended publications
  • (12) United States Patent (10) Patent No.: US 9,689,046 B2 Mayall Et Al
    USOO9689046B2 (12) United States Patent (10) Patent No.: US 9,689,046 B2 Mayall et al. (45) Date of Patent: Jun. 27, 2017 (54) SYSTEM AND METHODS FOR THE FOREIGN PATENT DOCUMENTS DETECTION OF MULTIPLE CHEMICAL WO O125472 A1 4/2001 COMPOUNDS WO O169245 A2 9, 2001 (71) Applicants: Robert Matthew Mayall, Calgary (CA); Emily Candice Hicks, Calgary OTHER PUBLICATIONS (CA); Margaret Mary-Flora Bebeselea, A. et al., “Electrochemical Degradation and Determina Renaud-Young, Calgary (CA); David tion of 4-Nitrophenol Using Multiple Pulsed Amperometry at Christopher Lloyd, Calgary (CA); Lisa Graphite Based Electrodes', Chem. Bull. “Politehnica” Univ. Kara Oberding, Calgary (CA); Iain (Timisoara), vol. 53(67), 1-2, 2008. Fraser Scotney George, Calgary (CA) Ben-Yoav. H. et al., “A whole cell electrochemical biosensor for water genotoxicity bio-detection”. Electrochimica Acta, 2009, 54(25), 6113-6118. (72) Inventors: Robert Matthew Mayall, Calgary Biran, I. et al., “On-line monitoring of gene expression'. Microbi (CA); Emily Candice Hicks, Calgary ology (Reading, England), 1999, 145 (Pt 8), 2129-2133. (CA); Margaret Mary-Flora Da Silva, P.S. et al., “Electrochemical Behavior of Hydroquinone Renaud-Young, Calgary (CA); David and Catechol at a Silsesquioxane-Modified Carbon Paste Elec trode'. J. Braz. Chem. Soc., vol. 24, No. 4, 695-699, 2013. Christopher Lloyd, Calgary (CA); Lisa Enache, T. A. & Oliveira-Brett, A. M., "Phenol and Para-Substituted Kara Oberding, Calgary (CA); Iain Phenols Electrochemical Oxidation Pathways”, Journal of Fraser Scotney George, Calgary (CA) Electroanalytical Chemistry, 2011, 1-35. Etesami, M. et al., “Electrooxidation of hydroquinone on simply prepared Au-Pt bimetallic nanoparticles'. Science China, Chem (73) Assignee: FREDSENSE TECHNOLOGIES istry, vol.
    [Show full text]
  • Bioactive Principles in Two Polyherbal Traditional Anti- Diabeteic Formulations
    IOSR Journal of Pharmacy and Biological Sciences (IOSR-JPBS) e-ISSN:2278-3008, p-ISSN:2319-7676. Volume 12, Issue 5 Ver. III (Sep. – Oct. 2017), PP 75-83 www.iosrjournals.org Bioactive Principles in Two Polyherbal Traditional Anti- Diabeteic Formulations *Ogbuji C A., 1 Ndulaka J.C. 2 Onuh, Emeka F 2 . and Eke Ugorji I. 3 1. Department of food Science and Technology, Abia State Polytechnic. Aba. Nigeria. 2. Department of Chemistry, Abia State Polytechnic, Aba. 3. Department of Medical Biochemistry, Abia State University, Uturu. Corresponding Author: Ogbuji C A., Abstract: Bioactive principles in two polyherbal traditional anti diabetic formulations of different plants used in the treatment of diabetes mellitus mixed in different ratios were characterized using Infrared spectroscopy. Six medicinal plants with proven anti diabetic and related beneficial effects were selected for the preparation of two mixtures Acanthus montanus, Asystasia gangetica, Emilia coccinea, Hibiscus rosa-sinesis, Momordica charantia (Bitter melon), and Venonia amygdalina. Mixtures of the All- Six (AS) herbal leaves recorded these compounds 3-beta-acetoxy-5-etienic, acid dihydroxyacetone, acetobromo-alpha-D-galactose, dihydroxyacetone, ethylacetohydroxomate, P-tolyacetonitrile, 4-aminoacetophenone, dihydroxyacetone,ethylacetohydroxomate, ethyl-4-chloro-2-cyanoacetoacetate while mixtures of All-four (AF) herbal leaves recorded ethylacetohydroxamate, ethyl-4,4,4-trichloroacetate, 4 – amino – acetophenone, ethylacetohydroxamate, p – tolyacetonitrile, thiophene-2-acetonitrile, ethyl-4-chloro-2-cyanoacetoacetate, acetobromo-alpha-D-galactose, ethylacetohydroxamate, 4-aminoacetophenone and thiophene-2-acetonitrile. Functional groups such as those of the nitriles, benzene, acetals, cyano-compounds, amines, amides, substituted and conjugated ketones and aldehydes, alkaloids, phenyl groups, chlorocompounds, bromo sugar, glycosides, thiophene derivatives, amino substituted compounds and indoles were identified.
    [Show full text]
  • Comparison of Nitrile Hydratases in Rhodococcus Rhodochrous DAP 96253 and DAP 96622 Growing on Inducing and Non- Inducing Media
    Georgia State University ScholarWorks @ Georgia State University Biology Dissertations Department of Biology Spring 4-26-2013 Comparison of Nitrile Hydratases in Rhodococcus Rhodochrous DAP 96253 and DAP 96622 Growing on Inducing and Non- Inducing Media Fengkun Du Georgia State University Follow this and additional works at: https://scholarworks.gsu.edu/biology_diss Recommended Citation Du, Fengkun, "Comparison of Nitrile Hydratases in Rhodococcus Rhodochrous DAP 96253 and DAP 96622 Growing on Inducing and Non-Inducing Media." Dissertation, Georgia State University, 2013. https://scholarworks.gsu.edu/biology_diss/130 This Dissertation is brought to you for free and open access by the Department of Biology at ScholarWorks @ Georgia State University. It has been accepted for inclusion in Biology Dissertations by an authorized administrator of ScholarWorks @ Georgia State University. For more information, please contact [email protected]. COMPARISON OF NITRILE HYDRATASES IN RHODOCOCCUS RHODOCHROUS DAP 96253 AND DAP 96622 GROWING ON INDUCING AND NON INDUCING MEDIA by FENGKUN DU Under the Direction of George E. Pierce ABSTRACT Nitrile hydratase activity in Rhodococcus rhodochrous DAP 96253 can be induced with multiple inducers that include urea, cobalt (Co), iron (Fe) and nickel (Ni). When induced with Co/urea, cells of R. rhodochrous DAP 96253 expressed the highest level of nitrile hydratase activity (~200 units/min·mg-cdw) when compared with the other inducers tested. Cells induced with Co had the second highest nitrile hydratase activity (~7 units/min·mg-cdw), whereas in the uninduced cells, nitrile hydratase activity was lower than 1 unit/min·mg-cdw. Similarly in R. rhodochrous DAP 96622, when induced with Co/urea, the nitrile hydratase activity of R.
    [Show full text]
  • Analysis of the Sll0783 Function in PHB Synthesis in Synechocystis PCC 6803: a Crucial Role of NADPH
    Analysis of the Sll0783 Function in PHB Synthesis in Synechocystis PCC 6803: a Crucial Role of NADPH in N-Starvation Dissertation der Mathematisch-Naturwissenschaftlichen Fakultät der Eberhard Karls Universität Tübingen zur Erlangung des Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) vorgelegt von Maximilian Schlebusch aus Engelskirchen Tübingen 2012 Tag der mündlichen Qualifikation: 03.02.2012 Dekan: Prof. Dr. Wolfgang Rosenstiel 1. Berichterstatter: Prof. Dr. Karl Forchhammer 2. Berichterstatter: Prof. Dr. Wolfgang Wohlleben Abstract Nitrogen frequently is a limiting nutrient in natural habitats. Therefore, cyanobac- teria as well as other autotrophic organisms have developed multiple strategies to adapt to nitrogen deficiency. Transcriptomic analyses of the strain Synechocys- tis PCC 6803 under nitrogen-deficient conditions revealed a highly induced gene (sll0783 ), which is annotated as conserved protein with unknown function. This gene is part of a cluster with seven genes and in the upstream region lies a pre- dicted NtcA-binding site. Homologues of this cluster occur in some unicellular, non-diazotrophic cyanobacteria, in several α-, β- and γ-proteobacteria as well as in some gram-positives. The common link between the heterotrophic bacteria seems to be the ability of nitrogen fixation and production of polyhydroxybu- tyrate (PHB), whereas among the cyanobacteria only Synechocystis PCC 6803 can accumulate PHB. In this work, a knockout mutant of this gene in Synechocystis PCC 6803 was characterised. This mutant was unable to accumulate PHB, a carbon and en- ergy storage compound. The levels of precursor metabolites such as glycogen and acetyl-CoA were not reduced. The impairment in PHB accumulation cor- related with a loss of PHB synthase activity during prolonged nitrogen starva- tion.
    [Show full text]
  • 12) United States Patent (10
    US007635572B2 (12) UnitedO States Patent (10) Patent No.: US 7,635,572 B2 Zhou et al. (45) Date of Patent: Dec. 22, 2009 (54) METHODS FOR CONDUCTING ASSAYS FOR 5,506,121 A 4/1996 Skerra et al. ENZYME ACTIVITY ON PROTEIN 5,510,270 A 4/1996 Fodor et al. MICROARRAYS 5,512,492 A 4/1996 Herron et al. 5,516,635 A 5/1996 Ekins et al. (75) Inventors: Fang X. Zhou, New Haven, CT (US); 5,532,128 A 7/1996 Eggers Barry Schweitzer, Cheshire, CT (US) 5,538,897 A 7/1996 Yates, III et al. s s 5,541,070 A 7/1996 Kauvar (73) Assignee: Life Technologies Corporation, .. S.E. al Carlsbad, CA (US) 5,585,069 A 12/1996 Zanzucchi et al. 5,585,639 A 12/1996 Dorsel et al. (*) Notice: Subject to any disclaimer, the term of this 5,593,838 A 1/1997 Zanzucchi et al. patent is extended or adjusted under 35 5,605,662 A 2f1997 Heller et al. U.S.C. 154(b) by 0 days. 5,620,850 A 4/1997 Bamdad et al. 5,624,711 A 4/1997 Sundberg et al. (21) Appl. No.: 10/865,431 5,627,369 A 5/1997 Vestal et al. 5,629,213 A 5/1997 Kornguth et al. (22) Filed: Jun. 9, 2004 (Continued) (65) Prior Publication Data FOREIGN PATENT DOCUMENTS US 2005/O118665 A1 Jun. 2, 2005 EP 596421 10, 1993 EP 0619321 12/1994 (51) Int. Cl. EP O664452 7, 1995 CI2O 1/50 (2006.01) EP O818467 1, 1998 (52) U.S.
    [Show full text]
  • (12) Patent Application Publication (10) Pub. No.: US 2012/0266329 A1 Mathur Et Al
    US 2012026.6329A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2012/0266329 A1 Mathur et al. (43) Pub. Date: Oct. 18, 2012 (54) NUCLEICACIDS AND PROTEINS AND CI2N 9/10 (2006.01) METHODS FOR MAKING AND USING THEMI CI2N 9/24 (2006.01) CI2N 9/02 (2006.01) (75) Inventors: Eric J. Mathur, Carlsbad, CA CI2N 9/06 (2006.01) (US); Cathy Chang, San Marcos, CI2P 2L/02 (2006.01) CA (US) CI2O I/04 (2006.01) CI2N 9/96 (2006.01) (73) Assignee: BP Corporation North America CI2N 5/82 (2006.01) Inc., Houston, TX (US) CI2N 15/53 (2006.01) CI2N IS/54 (2006.01) CI2N 15/57 2006.O1 (22) Filed: Feb. 20, 2012 CI2N IS/60 308: Related U.S. Application Data EN f :08: (62) Division of application No. 1 1/817,403, filed on May AOIH 5/00 (2006.01) 7, 2008, now Pat. No. 8,119,385, filed as application AOIH 5/10 (2006.01) No. PCT/US2006/007642 on Mar. 3, 2006. C07K I4/00 (2006.01) CI2N IS/II (2006.01) (60) Provisional application No. 60/658,984, filed on Mar. AOIH I/06 (2006.01) 4, 2005. CI2N 15/63 (2006.01) Publication Classification (52) U.S. Cl. ................... 800/293; 435/320.1; 435/252.3: 435/325; 435/254.11: 435/254.2:435/348; (51) Int. Cl. 435/419; 435/195; 435/196; 435/198: 435/233; CI2N 15/52 (2006.01) 435/201:435/232; 435/208; 435/227; 435/193; CI2N 15/85 (2006.01) 435/200; 435/189: 435/191: 435/69.1; 435/34; CI2N 5/86 (2006.01) 435/188:536/23.2; 435/468; 800/298; 800/320; CI2N 15/867 (2006.01) 800/317.2: 800/317.4: 800/320.3: 800/306; CI2N 5/864 (2006.01) 800/312 800/320.2: 800/317.3; 800/322; CI2N 5/8 (2006.01) 800/320.1; 530/350, 536/23.1: 800/278; 800/294 CI2N I/2 (2006.01) CI2N 5/10 (2006.01) (57) ABSTRACT CI2N L/15 (2006.01) CI2N I/19 (2006.01) The invention provides polypeptides, including enzymes, CI2N 9/14 (2006.01) structural proteins and binding proteins, polynucleotides CI2N 9/16 (2006.01) encoding these polypeptides, and methods of making and CI2N 9/20 (2006.01) using these polynucleotides and polypeptides.
    [Show full text]
  • All Enzymes in BRENDA™ the Comprehensive Enzyme Information System
    All enzymes in BRENDA™ The Comprehensive Enzyme Information System http://www.brenda-enzymes.org/index.php4?page=information/all_enzymes.php4 1.1.1.1 alcohol dehydrogenase 1.1.1.B1 D-arabitol-phosphate dehydrogenase 1.1.1.2 alcohol dehydrogenase (NADP+) 1.1.1.B3 (S)-specific secondary alcohol dehydrogenase 1.1.1.3 homoserine dehydrogenase 1.1.1.B4 (R)-specific secondary alcohol dehydrogenase 1.1.1.4 (R,R)-butanediol dehydrogenase 1.1.1.5 acetoin dehydrogenase 1.1.1.B5 NADP-retinol dehydrogenase 1.1.1.6 glycerol dehydrogenase 1.1.1.7 propanediol-phosphate dehydrogenase 1.1.1.8 glycerol-3-phosphate dehydrogenase (NAD+) 1.1.1.9 D-xylulose reductase 1.1.1.10 L-xylulose reductase 1.1.1.11 D-arabinitol 4-dehydrogenase 1.1.1.12 L-arabinitol 4-dehydrogenase 1.1.1.13 L-arabinitol 2-dehydrogenase 1.1.1.14 L-iditol 2-dehydrogenase 1.1.1.15 D-iditol 2-dehydrogenase 1.1.1.16 galactitol 2-dehydrogenase 1.1.1.17 mannitol-1-phosphate 5-dehydrogenase 1.1.1.18 inositol 2-dehydrogenase 1.1.1.19 glucuronate reductase 1.1.1.20 glucuronolactone reductase 1.1.1.21 aldehyde reductase 1.1.1.22 UDP-glucose 6-dehydrogenase 1.1.1.23 histidinol dehydrogenase 1.1.1.24 quinate dehydrogenase 1.1.1.25 shikimate dehydrogenase 1.1.1.26 glyoxylate reductase 1.1.1.27 L-lactate dehydrogenase 1.1.1.28 D-lactate dehydrogenase 1.1.1.29 glycerate dehydrogenase 1.1.1.30 3-hydroxybutyrate dehydrogenase 1.1.1.31 3-hydroxyisobutyrate dehydrogenase 1.1.1.32 mevaldate reductase 1.1.1.33 mevaldate reductase (NADPH) 1.1.1.34 hydroxymethylglutaryl-CoA reductase (NADPH) 1.1.1.35 3-hydroxyacyl-CoA
    [Show full text]
  • (12) Patent Application Publication (10) Pub. No.: US 2015/0240226A1 Mathur Et Al
    US 20150240226A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2015/0240226A1 Mathur et al. (43) Pub. Date: Aug. 27, 2015 (54) NUCLEICACIDS AND PROTEINS AND CI2N 9/16 (2006.01) METHODS FOR MAKING AND USING THEMI CI2N 9/02 (2006.01) CI2N 9/78 (2006.01) (71) Applicant: BP Corporation North America Inc., CI2N 9/12 (2006.01) Naperville, IL (US) CI2N 9/24 (2006.01) CI2O 1/02 (2006.01) (72) Inventors: Eric J. Mathur, San Diego, CA (US); CI2N 9/42 (2006.01) Cathy Chang, San Marcos, CA (US) (52) U.S. Cl. CPC. CI2N 9/88 (2013.01); C12O 1/02 (2013.01); (21) Appl. No.: 14/630,006 CI2O I/04 (2013.01): CI2N 9/80 (2013.01); CI2N 9/241.1 (2013.01); C12N 9/0065 (22) Filed: Feb. 24, 2015 (2013.01); C12N 9/2437 (2013.01); C12N 9/14 Related U.S. Application Data (2013.01); C12N 9/16 (2013.01); C12N 9/0061 (2013.01); C12N 9/78 (2013.01); C12N 9/0071 (62) Division of application No. 13/400,365, filed on Feb. (2013.01); C12N 9/1241 (2013.01): CI2N 20, 2012, now Pat. No. 8,962,800, which is a division 9/2482 (2013.01); C07K 2/00 (2013.01); C12Y of application No. 1 1/817,403, filed on May 7, 2008, 305/01004 (2013.01); C12Y 1 1 1/01016 now Pat. No. 8,119,385, filed as application No. PCT/ (2013.01); C12Y302/01004 (2013.01); C12Y US2006/007642 on Mar. 3, 2006.
    [Show full text]
  • Supplementary Material (ESI) for Natural Product Reports
    Electronic Supplementary Material (ESI) for Natural Product Reports. This journal is © The Royal Society of Chemistry 2014 Supplement to the paper of Alexey A. Lagunin, Rajesh K. Goel, Dinesh Y. Gawande, Priynka Pahwa, Tatyana A. Gloriozova, Alexander V. Dmitriev, Sergey M. Ivanov, Anastassia V. Rudik, Varvara I. Konova, Pavel V. Pogodin, Dmitry S. Druzhilovsky and Vladimir V. Poroikov “Chemo- and bioinformatics resources for in silico drug discovery from medicinal plants beyond their traditional use: a critical review” Contents PASS (Prediction of Activity Spectra for Substances) Approach S-1 Table S1. The lists of 122 known therapeutic effects for 50 analyzed medicinal plants with accuracy of PASS prediction calculated by a leave-one-out cross-validation procedure during the training and number of active compounds in PASS training set S-6 Table S2. The lists of 3,345 mechanisms of action that were predicted by PASS and were used in this study with accuracy of PASS prediction calculated by a leave-one-out cross-validation procedure during the training and number of active compounds in PASS training set S-9 Table S3. Comparison of direct PASS prediction results of known effects for phytoconstituents of 50 TIM plants with prediction of known effects through “mechanism-effect” and “target-pathway- effect” relationships from PharmaExpert S-79 S-1 PASS (Prediction of Activity Spectra for Substances) Approach PASS provides simultaneous predictions of many types of biological activity (activity spectrum) based on the structure of drug-like compounds. The approach used in PASS is based on the suggestion that biological activity of any drug-like compound is a function of its structure.
    [Show full text]
  • Springer Handbook of Enzymes
    Dietmar Schomburg Ida Schomburg (Eds.) Springer Handbook of Enzymes Alphabetical Name Index 1 23 © Springer-Verlag Berlin Heidelberg New York 2010 This work is subject to copyright. All rights reserved, whether in whole or part of the material con- cerned, specifically the right of translation, printing and reprinting, reproduction and storage in data- bases. The publisher cannot assume any legal responsibility for given data. Commercial distribution is only permitted with the publishers written consent. Springer Handbook of Enzymes, Vols. 1–39 + Supplements 1–7, Name Index 2.4.1.60 abequosyltransferase, Vol. 31, p. 468 2.7.1.157 N-acetylgalactosamine kinase, Vol. S2, p. 268 4.2.3.18 abietadiene synthase, Vol. S7,p.276 3.1.6.12 N-acetylgalactosamine-4-sulfatase, Vol. 11, p. 300 1.14.13.93 (+)-abscisic acid 8’-hydroxylase, Vol. S1, p. 602 3.1.6.4 N-acetylgalactosamine-6-sulfatase, Vol. 11, p. 267 1.2.3.14 abscisic-aldehyde oxidase, Vol. S1, p. 176 3.2.1.49 a-N-acetylgalactosaminidase, Vol. 13,p.10 1.2.1.10 acetaldehyde dehydrogenase (acetylating), Vol. 20, 3.2.1.53 b-N-acetylgalactosaminidase, Vol. 13,p.91 p. 115 2.4.99.3 a-N-acetylgalactosaminide a-2,6-sialyltransferase, 3.5.1.63 4-acetamidobutyrate deacetylase, Vol. 14,p.528 Vol. 33,p.335 3.5.1.51 4-acetamidobutyryl-CoA deacetylase, Vol. 14, 2.4.1.147 acetylgalactosaminyl-O-glycosyl-glycoprotein b- p. 482 1,3-N-acetylglucosaminyltransferase, Vol. 32, 3.5.1.29 2-(acetamidomethylene)succinate hydrolase, p. 287 Vol.
    [Show full text]
  • CYANIDE DEGRADATION by Bacillus Pumilus Cl: CELLULAR and MOLECULAR CHARACTERIZATION
    \. CYANIDE DEGRADATION BY Bacillus pumilus Cl: CELLULAR AND MOLECULAR CHARACTERIZATION by Paul Robert Meyers A thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy m the Department of Microbiology, Faculty of Science, University of Cape Town, South Africa. University of Cape Town Cape Town August 1993 The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgement of the source. The thesis is to be used for private study or non- commercial research purposes only. Published by the University of Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University of Cape Town CERTIFICATION OF SUPERVISOR In termsof paragraph GP 8 of "General Rules for the degree of Doctor of Philosophy (PhD)" I, as supervisor of the candidate Paul R. Meyers, certify that I approve of the incorporationin this thesis of material that has already been published or submitted for publication. Pro essor D.R. Woods Deputy Vice Chancellor (Research) Uruversityof Cape Town Director of Microbial Research Units ACKNOWLEDGEMENTS I wish to record my grateful thanks to my supervisors Professor Dave Woods and Professor Doug Rawlings for supervising this research. Thank you for your enthusiasm and expert guidance in directing me to this goal. Special thanks are due to Dr George Lindsey of the Department of Biochemistry who was always available for discussion and who enthusiastically supervised a large section of this work. Thanks to Pravin Gokool of National Chemical Products for his assistance in establishing this project at the University of Cape Town and for his helpful advice and discussions.
    [Show full text]
  • U. C. Banerjee, Ph.D. 1
    UTTAM CHAND BANERJEE, Ph.D. Professor and Head Department of Pharmaceutical Technology National Institute of Pharmaceutical Education and Research (NIPER) Sector 67, SAS Nagar 160 062, Punjab Telephone #: 0172-2214682-687, Mobile: 09417474790 Email: [email protected] RESEARCH INTEREST Pharmaceutical Biotechnology, Bioprocess engineering, Enzymatic Chiral Drug Synthesis, Fermentation and Downstream processing, Nanobiotechnology PROFESSIONAL DETAILS Research Experience : 37 years PhD Thesis Guided : 42 (3 students are enrolled) M.Tech/M Pharm Thesis : 145 ACADEMIC QUALIFICATIONS B.Sc. Chemistry Honours,Visva Bharati University, Shantineketan, 1977 B.Tech Food Technology and Biochemical Engineering, Jadavpur University, Kolkata, 1980 M.Tech Biochemical Engineering and Biotechnology, Indian Institute of Technology, Delhi, 1982 Ph.D. Chemical Engineering and Technology, Panjab University, Chandigarh, 1991 PROFFESIONAL EXPERIENCE Dean (2011-2014) NationalInstitute of Pharmaceutical Education and Research, SAS Nagar Professor and Head (2003-Till date) Department of Pharmaceutical Technology, NIPER, SAS Nagar In Charge, Biotechnology (2011- Till date) Department of Biotechnology, NIPER, SAS Nagar Professor and Head (2000-2003) Department of Biotechnology, NIPER, SAS Nagar Scientist EII (1997-2000) Institute of Microbial Technology, Chandigarh Scientist EI (1990-1997) Institute of Microbial Technology, Chandigarh Scientist C (1987-1990) Institute of Microbial Technology, Chandigarh Scientist B (1984-1987) Institute of Microbial Technology,
    [Show full text]