Tuberous Sclerosis Complex: Molecular Pathogenesis and Animal Models

Total Page:16

File Type:pdf, Size:1020Kb

Tuberous Sclerosis Complex: Molecular Pathogenesis and Animal Models Neurosurg Focus 20 (1):E4, 2006 Tuberous sclerosis complex: molecular pathogenesis and animal models LEANDRO R. PIEDIMONTE, M.D., IAN K. WAILES, M.D., AND HOWARD L. WEINER, M.D. Division of Pediatric Neurosurgery, Department of Neurosurgery, New York University School of Medicine, New York, New York Mutations in one of two genes, TSC1 and TSC2, result in a similar disease phenotype by disrupting the normal inter- action of their protein products, hamartin and tuberin, which form a functional signaling complex. Disruption of these genes in the brain results in abnormal cellular differentiation, migration, and proliferation, giving rise to the charac- teristic brain lesions of tuberous sclerosis complex (TSC) called cortical tubers. The most devastating complications of TSC affect the central nervous system and include epilepsy, mental retardation, autism, and glial tumors. Relevant animal models, including conventional and conditional knockout mice, are valuable tools for studying the normal func- tions of tuberin and hamartin and the way in which disruption of their expression gives rise to the variety of clinical features that characterize TSC. In the future, these animals will be invaluable preclinical models for the development of highly specific and efficacious treatments for children affected with TSC. KEY WORDS • tuberous sclerosis • pathogenesis • animal model Tuberous sclerosis complex is an autosomal-dominant zures, mental retardation, and autism.1,51 The number and tumor predisposition syndrome that affects approximately location of cortical tubers and the patient’s age at seizure 1 in 7500 individuals worldwide.19 The TSC is character- onset are highly correlated with neurological outcomes.1,30 ized by benign hamartomatous growths in multiple organs, Epilepsy occurs in approximately 80% of affected indi- including the kidney, skin, retina, lung, and brain. Rarely, viduals. Infants affected with TSC commonly present with malignant tumors, including renal cell carcinoma, can partial motor seizures or infantile spasms within the 1st develop. Although it has been nearly a decade since link- year of life.9 An increase in seizure frequency and severity age analyses first revealed the two genetic loci associated is common during early childhood. With maturity, TSC- with TSC, the mechanism by which disruption of these associated infantile spasms frequently evolve into other seizure types, including partial motor, complex partial, and genes produces associated abnormalities remains poorly 8 understood. The current efforts aimed at developing pre- secondarily generalized ones. Epileptogenic foci identified by electroencephalography frequently correlate with corti- clinical animal models have provided important insights 9,20 into the pathogenesis of TSC and will continue to provide cal tubers visualized on magnetic resonance imaging. In useful tools for studying potential clinical therapies. addition, the progression from infantile spasms to other seizure types might reflect the formation of tubers at dif- ferent times during cortical development. Thus, tubers in CLINICAL ASPECTS areas of the brain that become functionally mature earlier Neurological Manifestations and Brain Lesions can become epileptogenic before tubers located in brain regions that mature more slowly. Finally, due to the prema- Clinically, cortical tubers (pathognomonic lesions) cause turity of the patient, some as young as 20 weeks of gesta- extremely disabling CNS complications, which character- tion, physicians cannot accurately visualize each of these ize the TSC. Tubers are detected as high-intensity signals lesions, thus making the progression of epilepsy in patients that are often located in the junctions between the gray and with TSC extremely difficult to predict. white matter on T2-weighted magnetic resonance images. Tuberous sclerosis complex–associated seizures are The size and location of cortical tubers have been suggest- often refractory to conventional pharmacological therapies.␥ ed to correlate with the major CNS manifestations: sei- Improved seizure control has been achieved using the - aminobutyric acid agonist vigabatrin in some patients with 23 Abbreviations used in this paper: CNS = central nervous system; TSC. Pathological evidence suggests that cortical tubers GDP = guanosine diphosphate; GTP = guanosine triphosphate; represent areas of abnormal differentiation and migration. GTPase = guanosine triphosphatase; mTOR = mammalian target of Nevertheless, because surrounding areas of cortex are not rapamycin; Rheb = Ras homolog enriched in brain; TSC = tuberous disrupted and because tubers often disrupt normal cortical sclerosis complex. lamination, it has been hypothesized that these lesions Neurosurg. Focus / Volume 20 / January, 2006 1 Unauthenticated | Downloaded 10/01/21 02:46 AM UTC L. R. Piedimonte, I. K. Wailes, and H. L. Weiner result from the defective differentiation, migration, and high frequency of TSC2 mutation might reflect a higher proliferation of a subpopulation of precursor cells (Fig. 1). intrinsic mutation rate for the TSC2 gene. Tubers contain dysmorphic neurons and an increased Individuals who are born with a mutated copy of the number of astrocytes; thus they are characterized as “giant TSC1 or TSC2 gene in all cells of their bodies are predis- cells.” The cellular origin of these giant cells is unknown; posed to the development of tumors in numerous organs; however, they may arise from a neuroglial precursor cell, this suggests that these genes act as tumor suppressors. Tu- because giant cells often express both mature neuronal and mors develop in these individuals when one or more somat- astrocytic proteins. Many giant cells also express proteins ic cells undergo a “second hit” and the remaining wild-type found in immature CNS cells, including nestin and TSC gene is inactivated. This loss of TSC1 or TSC2 expres- vimentin.6,35 Similarly, the morphological features of giant sion results in abnormal cell growth and proliferation. cells are variable.40 Recent evidence supports the proposal Indeed, hamartomas from patients with both familial and that cells of cortical tubers can undergo active proliferation sporadic forms of the disease have displayed a loss of the and that, despite their early formation, these lesions can be normal copy of TSC1 or TSC2, known as a loss of hetero- 35 zygosity, which indicates that these genes act as classic tu- more dynamic than previously assumed. 24,41,59 In addition to cortical tubers, low-grade astrocytic neo- mor suppressors. In vitro studies have also supported plasms develop in individuals affected with TSC. Subepen- the role of these genes as tumor suppressors. When either tuberin or hamartin is overexpressed in cultured cells, the dymal nodules are benign proliferative lesions that line the 2,37 surface of the lateral ventricles. Unlike the cortical tubers, cells undergo growth arrest. Similarly, downregulation of TSC2 expression in culture fibroblasts by antisense inhi- these lesions are often asymptomatic, but can develop into 54 subependymal giant cell astrocytomas. Although not frank- bition has been shown to increase cell proliferation. Tuberin and hamartin are highly expressed in the CNS of ly malignant, subependymal giant cell astrocytomas can 21,39 cause ventricular obstruction and hydrocephalus, which re- humans and mice in both neurons and glial cells. Both quire neurosurgical intervention.52 In addition to glial cells, of these proteins appear to be required for CNS develop- ment, and tuberin may be essential for neuronal differen- subependymal nodules and subependymal giant cell astro- 53 cytomas can also contain giant cells. These lesions, like cor- tiation. The effect these proteins have in the CNS is prob- tical tubers, are thought to develop early in life and have ably the same as they have where they act as tumor 38 suppressors. This is hypothesized because tuberin expres- been identified as early as 27 weeks of gestation. Like cor- 61 tical tubers, these lesions are thought to arise from abnormal sion is reduced or absent in 30% of sporadic astrocytomas. development of precursor cells during brain formation. There is conflicting evidence whether somatic mutations of the wild-type TSC1 or TSC2 allele in a precursor cell are required for cortical tuber formation in patients who have Genetics and Molecular Pathogenesis 24,41,49 only one normal copy of one of the two TSC genes. Linkage studies have identified two distinct loci that 48 Because these lesions are composed of many different cell undergo mutational inactivation in individuals with TSC. types, it can be difficult to identify the subset of cells that The phenotypic expression of TSC is demonstrated when has undergone a second mutational event. In support of the mutations occur in one of the two genes, TSC1 or TSC2. hypothesis that two genetic “hits” are required for TSC- The TSC1 gene is located on 9q43; this gene contains 23 59 associated tuber formation, recent evidence suggests that, exons and encodes the 130-kD hamartin protein. Hamar- in mice, neuroepithelial cell progenitors that lack TSC2 tin has little sequence homology to other known proteins. expression have many features of the giant cells found in The TSC2 gene on 16p13 encodes the 180- to 200-kD cortical tubers.42 tuberin protein. Tuberin contains a small region with The two abnormal cellular phenotypes in TSC involve sequence similarity to proteins with GTPase–activating an increase in both cellular proliferation and cell size. In-
Recommended publications
  • Regulation of the Mammalian Target of Rapamycin Complex 2 (Mtorc2)
    Regulation of the Mammalian Target Of Rapamycin Complex 2 (mTORC2) Inauguraldissertation Zur Erlangung der Würde eines Doktors der Philosophie vorgelegt der Philosophisch-Naturwissenschaftlichen Fakultät der Universität Basel von Klaus-Dieter Molle aus Heilbronn, Deutschland Basel, 2006 Genehmigt von der Philosophisch-Naturwissenschaftlichen Fakultät Auf Antrag von Prof. Michael N. Hall und Prof. Markus Affolter. Basel, den 21.11.2006 Prof. Hans-Peter Hauri Dekan Summary The growth controlling mammalian Target of Rapamycin (mTOR) is a conserved Ser/Thr kinase found in two structurally and functionally distinct complexes, mTORC1 and mTORC2. The tumor suppressor TSC1-TSC2 complex inhibits mTORC1 by acting on the small GTPase Rheb, but the role of TSC1-TSC2 and Rheb in the regulation of mTORC2 is unclear. Here we examined the role of TSC1-TSC2 in the regulation of mTORC2 in human embryonic kidney 293 cells. Induced knockdown of TSC1 and TSC2 (TSC1/2) stimulated mTORC2-dependent actin cytoskeleton organization and Paxillin phosphorylation. Furthermore, TSC1/2 siRNA increased mTORC2-dependent Ser473 phosphorylation of plasma membrane bound, myristoylated Akt/PKB. This suggests that loss of Akt/PKB Ser473 phosphorylation in TSC mutant cells, as reported previously, is due to inhibition of Akt/PKB localization rather than inhibition of mTORC2 activity. Amino acids and overexpression of Rheb failed to stimulate mTORC2 signaling. Thus, TSC1-TSC2 also inhibits mTORC2, but possibly independently of Rheb. Our results suggest that mTORC2 hyperactivation may contribute to the pathophysiology of diseases such as cancer and Tuberous Sclerosis Complex. i Acknowledgement During my PhD studies in the Biozentrum I received a lot of support from many people around me who I mention here to express my gratefulness.
    [Show full text]
  • Lymphocyte/WBC-Based Comprehensive Testing Via Next-Gen Sequencing NF1/SPRED1 and Other Rasopathy Related Conditions on Blood/Saliva
    Last Updated October 2019 Institutional Price TAT Genetic Test CPT Codes Z codes Specimen Requirements (USD$) (working days) Lymphocyte/WBC-based Comprehensive Testing via Next-Gen Sequencing NF1/SPRED1 and Other RASopathy Related Conditions on Blood/Saliva NF1- only NGS testing and copy number analysis for the NF1 gene (NF1-NG) This testing includes an average coverage of >1600x to allow for the identification of (1) 3-6ml whole blood in EDTA (purple topped) tubes mosaicism as low as 3-5% of the alleles. In addition, novel variants identified in the $1,000 81408 25 (2) Oragene 575 saliva kit (provided by the MGL) ZB6A9 NF1 gene will be confirmed via RNA-based analysis at no additional charge. RNA- $1,600 (RUSH) 81479 15 (RUSH) (3) DNA sample (25ul volume at 3ug, O.D. value at based testing will also be provided to non-founder, multigenerational families with 260:280 ≥1.8) “classic” NF1 at no additional charge if next-generation sequencing is found negative. (1) 3-6ml whole blood in EDTA (purple topped) tubes SPRED1-only NGS testing and copy number analysis for SPRED1 (SPD1-NG) $800 81405 25 (2) Oragene 575 saliva kit (provided by the MGL) This testing includes an average coverage of >1600x to allow for the identification of ZB6AC $1,400 (RUSH) 81479 15 (RUSH) (3) DNA sample (25ul volume at 3ug, O.D. value at mosaicism as low as 3-5% of the alleles after comprehensive NF1 analysis. 260:280 ≥1.8) NF1/SPRED1 NGS testing and copy number analysis for NF1 and SPRED1 (NFSP-NG) (1) 3-6ml whole blood in EDTA (purple topped) tubes 81408 This testing includes an average coverage of >1600x to allow for the identification of $1,100 25 (2) Oragene 575 saliva kit (provided by the MGL) 81405 ZB6A8 mosaicism as low as 3-5% of the alleles.
    [Show full text]
  • TSC1/TSC2 Signaling in the CNS ⇑ Juliette M
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector FEBS Letters 585 (2011) 973–980 journal homepage: www.FEBSLetters.org Review TSC1/TSC2 signaling in the CNS ⇑ Juliette M. Han, Mustafa Sahin The F.M. Kirby Neurobiology Center, Department of Neurology, Children’s Hospital Boston, Harvard Medical School, Boston, MA 02115, USA article info abstract Article history: Over the past several years, the study of a hereditary tumor syndrome, tuberous sclerosis complex Received 5 January 2011 (TSC), has shed light on the regulation of cellular proliferation and growth. TSC is an autosomal Revised 1 February 2011 dominant disorder that is due to inactivating mutations in TSC1 or TSC2 and characterized by benign Accepted 1 February 2011 tumors (hamartomas) involving multiple organ systems. The TSC1/2 complex has been found to play Available online 15 February 2011 a crucial role in an evolutionarily-conserved signaling pathway that regulates cell growth: the Edited by Wilhelm Just mTORC1 pathway. This pathway promotes anabolic processes and inhibits catabolic processes in response to extracellular and intracellular factors. Findings in cancer biology have reinforced the critical role for TSC1/2 in cell growth and proliferation. In contrast to cancer cells, in the CNS, the Keywords: mTOR TSC1/2 complex not only regulates cell growth/proliferation, but also orchestrates an intricate and Autism finely tuned system that has distinctive roles under different conditions, depending on cell type, Translation stage of development, and subcellular localization. Overall, TSC1/2 signaling in the CNS, via its multi-faceted roles, contributes to proper neural connectivity.
    [Show full text]
  • Mtor: a Pharmacologic Target for Autophagy Regulation
    mTOR: a pharmacologic target for autophagy regulation Young Chul Kim, Kun-Liang Guan J Clin Invest. 2015;125(1):25-32. https://doi.org/10.1172/JCI73939. Review mTOR, a serine/threonine kinase, is a master regulator of cellular metabolism. mTOR regulates cell growth and proliferation in response to a wide range of cues, and its signaling pathway is deregulated in many human diseases. mTOR also plays a crucial role in regulating autophagy. This Review provides an overview of the mTOR signaling pathway, the mechanisms of mTOR in autophagy regulation, and the clinical implications of mTOR inhibitors in disease treatment. Find the latest version: https://jci.me/73939/pdf The Journal of Clinical Investigation REVIEW SERIES: AUTOPHAGY Series Editor: Guido Kroemer mTOR: a pharmacologic target for autophagy regulation Young Chul Kim and Kun-Liang Guan Department of Pharmacology and Moores Cancer Center, UCSD, La Jolla, California, USA. mTOR, a serine/threonine kinase, is a master regulator of cellular metabolism. mTOR regulates cell growth and proliferation in response to a wide range of cues, and its signaling pathway is deregulated in many human diseases. mTOR also plays a crucial role in regulating autophagy. This Review provides an overview of the mTOR signaling pathway, the mechanisms of mTOR in autophagy regulation, and the clinical implications of mTOR inhibitors in disease treatment. Overview of mTOR signaling pathway such as insulin and IGF activate their cognate receptors (recep- Nutrients, growth factors, and cellular energy levels are key deter- tor tyrosine kinases [RTKs]) and subsequently activate the PI3K/ minants of cell growth and proliferation. mTOR, a serine/threon- AKT signaling axis.
    [Show full text]
  • Mutational Spectrum of the TSC1 Gene in a Cohort of 225 Tuberous Sclerosis Complex Patients: J Med Genet: First Published As 10.1136/Jmg.36.4.285 on 1 April 1999
    J Med Genet 1999;36:285–289 285 Mutational spectrum of the TSC1 gene in a cohort of 225 tuberous sclerosis complex patients: J Med Genet: first published as 10.1136/jmg.36.4.285 on 1 April 1999. Downloaded from no evidence for genotype-phenotype correlation Marjon van Slegtenhorst, Senno Verhoef, Anita Tempelaars, Lida Bakker, Qi Wang, Marja Wessels, Remco Bakker, Mark Nellist, Dick Lindhout, Dicky Halley, Ans van den Ouweland Abstract TSC1 locus on chromosome 9q34 and the Tuberous sclerosis complex is an inherited other half to the TSC2 locus on chromosome tumour suppressor syndrome, caused by a 16p13.67 The TSC1 and TSC2 genes were mutation in either the TSC1 or TSC2 identified by positional cloning89 and there is gene. The disease is characterised by a abundant evidence that both genes act as broad phenotypic spectrum that can in- tumour suppressor genes.10–13 clude seizures, mental retardation, renal The TSC2 gene consists of 41 exons, dysfunction, and dermatological abnor- spanning 43 kb of genomic DNA.14 It encodes malities. The TSC1 gene was recently a 200 kDa protein, tuberin, which has a identified and has 23 exons, spanning 45 putative GAP activity for rab515 and rap1,16 two kb of genomic DNA, and encoding an 8.6 members of the ras superfamily of small kb mRNA. After screening all 21 coding GTPases. The mutational spectrum of TSC2 exons in our collection of 225 unrelated includes a number of large deletions often dis- 17 18 patients, only 29 small mutations were rupting the PKD1 gene as well, but also 19–27 detected, suggesting that TSC1 mutations point mutations and a number of missense 28 are under-represented among TSC pa- changes.
    [Show full text]
  • Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association Between BMI and Adult-Onset Non- Atopic
    Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association between BMI and Adult-Onset Non- Atopic Asthma Ayoung Jeong 1,2, Medea Imboden 1,2, Akram Ghantous 3, Alexei Novoloaca 3, Anne-Elie Carsin 4,5,6, Manolis Kogevinas 4,5,6, Christian Schindler 1,2, Gianfranco Lovison 7, Zdenko Herceg 3, Cyrille Cuenin 3, Roel Vermeulen 8, Deborah Jarvis 9, André F. S. Amaral 9, Florian Kronenberg 10, Paolo Vineis 11,12 and Nicole Probst-Hensch 1,2,* 1 Swiss Tropical and Public Health Institute, 4051 Basel, Switzerland; [email protected] (A.J.); [email protected] (M.I.); [email protected] (C.S.) 2 Department of Public Health, University of Basel, 4001 Basel, Switzerland 3 International Agency for Research on Cancer, 69372 Lyon, France; [email protected] (A.G.); [email protected] (A.N.); [email protected] (Z.H.); [email protected] (C.C.) 4 ISGlobal, Barcelona Institute for Global Health, 08003 Barcelona, Spain; [email protected] (A.-E.C.); [email protected] (M.K.) 5 Universitat Pompeu Fabra (UPF), 08002 Barcelona, Spain 6 CIBER Epidemiología y Salud Pública (CIBERESP), 08005 Barcelona, Spain 7 Department of Economics, Business and Statistics, University of Palermo, 90128 Palermo, Italy; [email protected] 8 Environmental Epidemiology Division, Utrecht University, Institute for Risk Assessment Sciences, 3584CM Utrecht, Netherlands; [email protected] 9 Population Health and Occupational Disease, National Heart and Lung Institute, Imperial College, SW3 6LR London, UK; [email protected] (D.J.); [email protected] (A.F.S.A.) 10 Division of Genetic Epidemiology, Medical University of Innsbruck, 6020 Innsbruck, Austria; [email protected] 11 MRC-PHE Centre for Environment and Health, School of Public Health, Imperial College London, W2 1PG London, UK; [email protected] 12 Italian Institute for Genomic Medicine (IIGM), 10126 Turin, Italy * Correspondence: [email protected]; Tel.: +41-61-284-8378 Int.
    [Show full text]
  • Whole Exome Sequencing in Families at High Risk for Hodgkin Lymphoma: Identification of a Predisposing Mutation in the KDR Gene
    Hodgkin Lymphoma SUPPLEMENTARY APPENDIX Whole exome sequencing in families at high risk for Hodgkin lymphoma: identification of a predisposing mutation in the KDR gene Melissa Rotunno, 1 Mary L. McMaster, 1 Joseph Boland, 2 Sara Bass, 2 Xijun Zhang, 2 Laurie Burdett, 2 Belynda Hicks, 2 Sarangan Ravichandran, 3 Brian T. Luke, 3 Meredith Yeager, 2 Laura Fontaine, 4 Paula L. Hyland, 1 Alisa M. Goldstein, 1 NCI DCEG Cancer Sequencing Working Group, NCI DCEG Cancer Genomics Research Laboratory, Stephen J. Chanock, 5 Neil E. Caporaso, 1 Margaret A. Tucker, 6 and Lynn R. Goldin 1 1Genetic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD; 2Cancer Genomics Research Laboratory, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD; 3Ad - vanced Biomedical Computing Center, Leidos Biomedical Research Inc.; Frederick National Laboratory for Cancer Research, Frederick, MD; 4Westat, Inc., Rockville MD; 5Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD; and 6Human Genetics Program, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD, USA ©2016 Ferrata Storti Foundation. This is an open-access paper. doi:10.3324/haematol.2015.135475 Received: August 19, 2015. Accepted: January 7, 2016. Pre-published: June 13, 2016. Correspondence: [email protected] Supplemental Author Information: NCI DCEG Cancer Sequencing Working Group: Mark H. Greene, Allan Hildesheim, Nan Hu, Maria Theresa Landi, Jennifer Loud, Phuong Mai, Lisa Mirabello, Lindsay Morton, Dilys Parry, Anand Pathak, Douglas R. Stewart, Philip R. Taylor, Geoffrey S. Tobias, Xiaohong R. Yang, Guoqin Yu NCI DCEG Cancer Genomics Research Laboratory: Salma Chowdhury, Michael Cullen, Casey Dagnall, Herbert Higson, Amy A.
    [Show full text]
  • Immersion Course Lecture Kelly
    Genomic Counseling in the research setting Kelly East, MS CGC Genetic Counselor HudsonAlpha Institute for Biotechnology single gene disorders • mutation in a single gene leads to disease • often has characteristic family inheritance patterns J Neurol Neurosurg Psychiatry 2002;73:ii5-ii11 Genes that code for hemoglobin 1 2 3 4 5 HBB 6 7 8 9 10 11 12 HBA2 13 14 15 16 17 18 19 20 21 22 X Y http://www.genome.gov/glossary/resources/karyotype.pdf TARDBP Genes associated ALS2 with ALS 1 2 3 4 5 C9ORF72 OPTN FIG4 ATXN2 SETX 6 7 8 9 10 11 12 ANG SPG11 FUS 13 14 15 16 17 18 VAPB UBQLN2 SOD1 19 20 21 22 X Y http://www.genome.gov/glossary/resources/karyotype.pdf complex traits • most common traits and diseases have a complex etiology • causative risks can include genetic changes (both large and small scale) environmental factors (head injury, nutrition, exposure to toxins) societal factors (death of family member, abuse, hardships) • in most cases - not triggered by a change in a single gene but rather by the interaction of several genetic, environmental and societal risks spectrum of human genetic conditions CGTATACCGGGTCATGCACGTGTAGAGCGAGTTAGCTCGCTGGCTAAAGAGGGTCGAC ATCCGCGAGTTTATGAGGAAGAATCGGCAGCTTGACCGAAGAGGCGTGGTAAGACCCG TTAGGGATCGTATACCGGGTCATGCACGTGTAGAGCGAGTTAGCTCGCTGGCTAAAGA GGGTCGACATCCGCGAGTTTATGAGGAAGAATCGGCAGCTTGACCGAAGAGGCGTGGT AAGACCCGTTAGGGATCGTATACCGGGTCATGCACGTGTAGAGCGAGTTAGCTCGCTG GCTAAAGAGGGTCGACATCCGCGAGTTTATGAGGAAGAATCGGCAGCTTGACCGAAGA GGCGTGGTAAGACCCGTTAGGGATCGTATACCGGGTCATGCACGTGTAGAGCGAGTTA in patients with a suspected genetic
    [Show full text]
  • Supplementary Table 2
    Supplementary Table 2. Differentially Expressed Genes following Sham treatment relative to Untreated Controls Fold Change Accession Name Symbol 3 h 12 h NM_013121 CD28 antigen Cd28 12.82 BG665360 FMS-like tyrosine kinase 1 Flt1 9.63 NM_012701 Adrenergic receptor, beta 1 Adrb1 8.24 0.46 U20796 Nuclear receptor subfamily 1, group D, member 2 Nr1d2 7.22 NM_017116 Calpain 2 Capn2 6.41 BE097282 Guanine nucleotide binding protein, alpha 12 Gna12 6.21 NM_053328 Basic helix-loop-helix domain containing, class B2 Bhlhb2 5.79 NM_053831 Guanylate cyclase 2f Gucy2f 5.71 AW251703 Tumor necrosis factor receptor superfamily, member 12a Tnfrsf12a 5.57 NM_021691 Twist homolog 2 (Drosophila) Twist2 5.42 NM_133550 Fc receptor, IgE, low affinity II, alpha polypeptide Fcer2a 4.93 NM_031120 Signal sequence receptor, gamma Ssr3 4.84 NM_053544 Secreted frizzled-related protein 4 Sfrp4 4.73 NM_053910 Pleckstrin homology, Sec7 and coiled/coil domains 1 Pscd1 4.69 BE113233 Suppressor of cytokine signaling 2 Socs2 4.68 NM_053949 Potassium voltage-gated channel, subfamily H (eag- Kcnh2 4.60 related), member 2 NM_017305 Glutamate cysteine ligase, modifier subunit Gclm 4.59 NM_017309 Protein phospatase 3, regulatory subunit B, alpha Ppp3r1 4.54 isoform,type 1 NM_012765 5-hydroxytryptamine (serotonin) receptor 2C Htr2c 4.46 NM_017218 V-erb-b2 erythroblastic leukemia viral oncogene homolog Erbb3 4.42 3 (avian) AW918369 Zinc finger protein 191 Zfp191 4.38 NM_031034 Guanine nucleotide binding protein, alpha 12 Gna12 4.38 NM_017020 Interleukin 6 receptor Il6r 4.37 AJ002942
    [Show full text]
  • Rho Guanine Nucleotide Exchange Factors: Regulators of Rho Gtpase Activity in Development and Disease
    Oncogene (2014) 33, 4021–4035 & 2014 Macmillan Publishers Limited All rights reserved 0950-9232/14 www.nature.com/onc REVIEW Rho guanine nucleotide exchange factors: regulators of Rho GTPase activity in development and disease DR Cook1, KL Rossman2,3 and CJ Der1,2,3 The aberrant activity of Ras homologous (Rho) family small GTPases (20 human members) has been implicated in cancer and other human diseases. However, in contrast to the direct mutational activation of Ras found in cancer and developmental disorders, Rho GTPases are activated most commonly in disease by indirect mechanisms. One prevalent mechanism involves aberrant Rho activation via the deregulated expression and/or activity of Rho family guanine nucleotide exchange factors (RhoGEFs). RhoGEFs promote formation of the active GTP-bound state of Rho GTPases. The largest family of RhoGEFs is comprised of the Dbl family RhoGEFs with 70 human members. The multitude of RhoGEFs that activate a single Rho GTPase reflects the very specific role of each RhoGEF in controlling distinct signaling mechanisms involved in Rho activation. In this review, we summarize the role of Dbl RhoGEFs in development and disease, with a focus on Ect2 (epithelial cell transforming squence 2), Tiam1 (T-cell lymphoma invasion and metastasis 1), Vav and P-Rex1/2 (PtdIns(3,4,5)P3 (phosphatidylinositol (3,4,5)-triphosphate)-dependent Rac exchanger). Oncogene (2014) 33, 4021–4035; doi:10.1038/onc.2013.362; published online 16 September 2013 Keywords: Rac1; RhoA; Cdc42; guanine nucleotide exchange factors; cancer;
    [Show full text]
  • Mir-126-3P Contributes to Sorafenib Resistance in Hepatocellular Carcinoma Via Downregulating SPRED1
    38 Original Article Page 1 of 14 miR-126-3p contributes to sorafenib resistance in hepatocellular carcinoma via downregulating SPRED1 Wenliang Tan1,2#, Zhirong Lin1,2#, Xianqing Chen3, Wenxin Li4, Sicong Zhu1,5, Yingcheng Wei1,2, Liyun Huo1,2, Yajin Chen1,2, Changzhen Shang1,2 1Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Sun Yat-sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China; 2Department of Hepatobiliary Surgery, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, China; 3Department of Hepatobiliary Surgery, the Eighth Affiliated Hospital, Sun Yat-sen University, Shenzhen, China; 4Department of Cardiology, the Eighth Affiliated Hospital, Sun Yat-sen University, Shenzhen, China; 5Department of Surgical Intensive Care Unit, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, China Contributions: (I) Conception and design: C Shang, Y Chen; (II) Administrative support: C Shang, Y Chen; (III) Provision of study materials or patients: W Tan, Z Lin; (IV) Collection and assembly of data: S Zhu, Y Wei, L Huo; (V) Data analysis and interpretation: X Chen, W Li; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors. #These authors contributed equally to this work. Correspondence to: Changzhen Shang; Yajin Chen. Department of Hepatobiliary Surgery, Sun Yat-sen Memorial Hospital of Sun Yat-sen University, Guangzhou 510120, China. Email: [email protected]; [email protected]. Background: Sorafenib can prolong the survival of patients with advanced hepatocellular carcinoma (HCC). However, drug resistance remains the main obstacle to improving its efficiency. This study aimed to explore the likely molecular mechanism of sorafenib resistance. Methods: Differentially expressed microRNAs (miRNAs) related to sorafenib response were analyzed with the Limma package in R software.
    [Show full text]
  • Neurofibromatosis-1 Regulates Mtor-Mediated Astrocyte Growth
    Neurofibromatosis-1 regulates mTOR-mediated astrocyte growth and glioma formation in a TSC/Rheb-independent manner Sutapa Banerjee, Nikkilina R. Crouse, Ryan J. Emnett, Scott M. Gianino, and David H. Gutmann1 Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110 Edited* by Webster K. Cavenee, Ludwig Institute, University of California at San Diego, La Jolla, CA, and approved August 15, 2011 (received for review December 17, 2010) Converging evidence from the analysis of human brain tumors seizures and death, whereas Nf1 loss in these same neuroglial and genetically engineered mice has revealed that the mamma- progenitors has no effect on mouse viability or epileptogenesis (16, lian target of rapamycin (mTOR) pathway is a central regulator of 17). Importantly, although Pten-, hamartin-, and neurofibromin- glial and glioma cell growth. In this regard, mutational inactiva- deficient glial phenotypes have different biological effects, each tion of neurofibromatosis-1 (NF1), tuberous sclerosis complex is completely inhibited by rapamycin in vitro and in vivo (15, 18– (TSC), and PTEN genes is associated with glioma formation, such 21). Collectively, these observations support a model in which fi that pharmacologic inhibition of mTOR signaling results in atten- neuro bromin-regulated mTOR-dependent growth regulation uated tumor growth. This shared dependence on mTOR suggests is distinct from TSC/Rheb-mediated mTOR-dependent growth that PTEN and NF1 (neurofibromin) glial growth regulation regulation in the brain. To
    [Show full text]