Addendum to Microalgae Culture Collection 1986
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Periodic and Coordinated Gene Expression Between a Diazotroph and Its Diatom Host
The ISME Journal (2019) 13:118–131 https://doi.org/10.1038/s41396-018-0262-2 ARTICLE Periodic and coordinated gene expression between a diazotroph and its diatom host 1 1,2 1 3 4 Matthew J. Harke ● Kyle R. Frischkorn ● Sheean T. Haley ● Frank O. Aylward ● Jonathan P. Zehr ● Sonya T. Dyhrman1,2 Received: 11 April 2018 / Revised: 28 June 2018 / Accepted: 28 July 2018 / Published online: 16 August 2018 © International Society for Microbial Ecology 2018 Abstract In the surface ocean, light fuels photosynthetic carbon fixation of phytoplankton, playing a critical role in ecosystem processes including carbon export to the deep sea. In oligotrophic oceans, diatom–diazotroph associations (DDAs) play a keystone role in ecosystem function because diazotrophs can provide otherwise scarce biologically available nitrogen to the diatom host, fueling growth and subsequent carbon sequestration. Despite their importance, relatively little is known about the nature of these associations in situ. Here we used metatranscriptomic sequencing of surface samples from the North Pacific Subtropical Gyre (NPSG) to reconstruct patterns of gene expression for the diazotrophic symbiont Richelia and we – 1234567890();,: 1234567890();,: examined how these patterns were integrated with those of the diatom host over day night transitions. Richelia exhibited significant diel signals for genes related to photosynthesis, N2 fixation, and resource acquisition, among other processes. N2 fixation genes were significantly co-expressed with host nitrogen uptake and metabolism, as well as potential genes involved in carbon transport, which may underpin the exchange of nitrogen and carbon within this association. Patterns of expression suggested cell division was integrated between the host and symbiont across the diel cycle. -
Outer Continental Shelf Environmental Assessment Program, Final Reports of Principal Investigators. Volume 71
Outer Continental Shelf Environmental Assessment Program Final Reports of Principal Investigators Volume 71 November 1990 U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Ocean Service Office of Oceanography and Marine Assessment Ocean Assessments Division Alaska Office U.S. DEPARTMENT OF THE INTERIOR Minerals Management Service Alaska OCS Region OCS Study, MMS 90-0094 "Outer Continental Shelf Environmental Assessment Program Final Reports of Principal Investigators" ("OCSEAP Final Reports") continues the series entitled "Environmental Assessment of the Alaskan Continental Shelf Final Reports of Principal Investigators." It is suggested that reports in this volume be cited as follows: Horner, R. A. 1981. Bering Sea phytoplankton studies. U.S. Dep. Commer., NOAA, OCSEAP Final Rep. 71: 1-149. McGurk, M., D. Warburton, T. Parker, and M. Litke. 1990. Early life history of Pacific herring: 1989 Prince William Sound herring egg incubation experiment. U.S. Dep. Commer., NOAA, OCSEAP Final Rep. 71: 151-237. McGurk, M., D. Warburton, and V. Komori. 1990. Early life history of Pacific herring: 1989 Prince William Sound herring larvae survey. U.S. Dep. Commer., NOAA, OCSEAP Final Rep. 71: 239-347. Thorsteinson, L. K., L. E. Jarvela, and D. A. Hale. 1990. Arctic fish habitat use investi- gations: nearshore studies in the Alaskan Beaufort Sea, summer 1988. U.S. Dep. Commer., NOAA, OCSEAP Final Rep. 71: 349-485. OCSEAP Final Reports are published by the U.S. Department of Commerce, National Oceanic and Atmospheric Administration, National Ocean Service, Ocean Assessments Division, Alaska Office, Anchorage, and primarily funded by the Minerals Management Service, U.S. Department of the Interior, through interagency agreement. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Control of Phytoplankton Growth in Nutrient Recycling Ecosystems
MARINE ECOLOGY PROGRESS SERIES Published May 29 Mar. Ecol. Prog. Ser. Control of phytoplankton growth in nutrient recycling ecosystems. Theory and terminology T. Frede ~hingstadl,Egil sakshaug2 ' Department of Microbiology and Plant Physiology, University of Bergen, Jahnebk. 5,N-5007 Bergen, Norway Trondhjem Biological Station, The Museum. University of Trondheim, Bynesvn. 46, N-7018 Trondheim, Norway ABSTRACT: Some of the principles governing phytoplankton growth, biomass, and species composi- tion in 2-layered pelagic ecosystems are explored using an idealized, steady-state, mathematical model, based on simple extensions of Lotka-Volterra type equations. In particular, the properties of a food web based on 'small' and 'large' phytoplankton are investigated. Features of the phytoplankton community that may be derived from this conceptually simple model include CO-existenceof more than one species on one limiting nutrient, a rapid growth rate for a large fraction of the phytoplankton community in oligotrophic waters, a long food chain starting from a population of small phytoplankton in waters with moderate mixing over the nutricline, and a transition to dominance of a food chain based on large phytoplankton when mixing is increased. As pointed out by other authors, careless use of the concept of one limiting factor may be potentially confusing in such systems. To avoid this, a distinction in terminology between 'controlling' and 'limiting' factors is suggested. INTRODUCTION dominance of short food chains in upwelling areas (Ryther 1969). Various aspects of nutrient cycling in pelagic ecosys- Many authors have addressed various aspects of the tems are of prime importance to our understanding of planktonic ecosystem using mathematical models how productivity of the oceans is controlled, and to our which are idealized and conceptual. -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
Marine Plankton Diatoms of the West Coast of North America
MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. CUPP UNIVERSITY OF CALIFORNIA PRESS BERKELEY AND LOS ANGELES 1943 BULLETIN OF THE SCRIPPS INSTITUTION OF OCEANOGRAPHY OF THE UNIVERSITY OF CALIFORNIA LA JOLLA, CALIFORNIA EDITORS: H. U. SVERDRUP, R. H. FLEMING, L. H. MILLER, C. E. ZoBELL Volume 5, No.1, pp. 1-238, plates 1-5, 168 text figures Submitted by editors December 26,1940 Issued March 13, 1943 Price, $2.50 UNIVERSITY OF CALIFORNIA PRESS BERKELEY, CALIFORNIA _____________ CAMBRIDGE UNIVERSITY PRESS LONDON, ENGLAND [CONTRIBUTION FROM THE SCRIPPS INSTITUTION OF OCEANOGRAPHY, NEW SERIES, No. 190] PRINTED IN THE UNITED STATES OF AMERICA Taxonomy and taxonomic names change over time. The names and taxonomic scheme used in this work have not been updated from the original date of publication. The published literature on marine diatoms should be consulted to ensure the use of current and correct taxonomic names of diatoms. CONTENTS PAGE Introduction 1 General Discussion 2 Characteristics of Diatoms and Their Relationship to Other Classes of Algae 2 Structure of Diatoms 3 Frustule 3 Protoplast 13 Biology of Diatoms 16 Reproduction 16 Colony Formation and the Secretion of Mucus 20 Movement of Diatoms 20 Adaptations for Flotation 22 Occurrence and Distribution of Diatoms in the Ocean 22 Associations of Diatoms with Other Organisms 24 Physiology of Diatoms 26 Nutrition 26 Environmental Factors Limiting Phytoplankton Production and Populations 27 Importance of Diatoms as a Source of food in the Sea 29 Collection and Preparation of Diatoms for Examination 29 Preparation for Examination 30 Methods of Illustration 33 Classification 33 Key 34 Centricae 39 Pennatae 172 Literature Cited 209 Plates 223 Index to Genera and Species 235 MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. -
Diversity and Dynamics of Relevant Nanoplanktonic Diatoms in The
Diversity and dynamics of relevant nanoplanktonic diatoms in the Western English Channel Laure Arsenieff, Florence Le Gall, Fabienne Rigaut-Jalabert, Frédéric Mahé, Diana Sarno, Léna Gouhier, Anne-Claire Baudoux, Nathalie Simon To cite this version: Laure Arsenieff, Florence Le Gall, Fabienne Rigaut-Jalabert, Frédéric Mahé, Diana Sarno, etal.. Diversity and dynamics of relevant nanoplanktonic diatoms in the Western English Channel. ISME Journal, Nature Publishing Group, 2020, 14 (8), pp.1966-1981. 10.1038/s41396-020-0659-6. hal- 02888711 HAL Id: hal-02888711 https://hal.sorbonne-universite.fr/hal-02888711 Submitted on 3 Jul 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 5 9 / w b [ ! ! " C [ D ! " C % w &W % (" C) ) a ) +" 5 , -" [) D ." ! &/ . 0 " b , ,% 1 )" /bw," 1aw 2 -- & 9 a t " , .4 w" (5678 w" C (,% 1 )" /bw," C) ) w Cw(-(-" , .4 w" (5768 w" C +/9w!5" 1aw .Dt9" +-+56 a " C -, : ; ! 5 " < / " 68 ( b " 9 .,% 1 )" /bw," Cw(-(-" w / / " , .4 w" (5768 w" C ! = % 4 / [ ! , .4 w 1aw 2 -- /bw,&,% 1 ) t D = (5768 w C >%&? @++ ( 56 (5 (+ (+ ! b , , .4 w 1aw 2 -- /bw,&,% 1 ) t D = (5768 w C >%&? @++ ( 56 (5 (. -
Diatoms As Environmental Indicators: a Case Study in the Bioluminescent Bays of Vieques, Puerto Rico
Hunter, J. 2007. 20th Annual Keck Symposium; http://keck.wooster.edu/publications DIATOMS AS ENVIRONMENTAL INDICATORS: A CASE STUDY IN THE BIOLUMINESCENT BAYS OF VIEQUES, PUERTO RICO JENNA M. HUNTER Beloit College Advisors: Tim Ku; Anna Martini; Carl Mendelson INTRODUCTION Index (IDP). Although slightly different in taxonomic specificity, all indices are similar Diatoms, microscopic, unicellular, eukaryotic in that they yield a numerical value that is algae abundant in most aquatic habitats, are constrained by both a minimum and a maximum useful proxies for the ecological analysis of value. The IDP, as suggested and utilized by three bays on the island of Vieques, Puerto Rico. Levêque Prygiel in 1996, provided the most Acutely sensitive to changes in pH, salinity, straightforward guide during the analysis of temperature, hydrodynamic conditions, and diatoms in this study. The paleoecological value nutrient concentrations, marine diatoms can of the diatoms has also been well demonstrated be identified by their distinct assemblages and by Koizumi (1975). Unfortunately, diatom frustule shape. The ubiquitous distribution assessment is challenging due to the developing of diatoms, their high species diversity, and nature of a formal taxonomy and nomenclature. their siliceous frustule all enable the diatoms to function as sound environmental indicators. Diatoms (Bacillariophyta) are markedly Samples were taken from ten of twenty-seven distinguishable into two orders, the Centrales extruded cores within the three bays, Bahía and the Pennales. The Centrales, or centric Tapón (BT), Puerto Ferro (PF), and Puerto diatoms, have a radial symmetry and are Mosquito (PM), and then investigated for the successful as plankton in marine waters. Their presence and abundance of mid- and late- frustules, or shells, can also be triangular or Holocene marine diatoms. -
PHYCOLOGICAL REVIEWS 18 the Species Concept in Diatoms
Phycologia (1999) Volume 38 (6), 437-495 Published 10 December 1999 PHYCOLOGICAL REVIEWS 18 The species concept in diatoms DAVID G. MANN* Royal Botanic Garden, Edinburgh EH3 5LR, Scotland, UK D.G. MANN. 1999. Phycological reviews 18. The species concept in diatoms. Phycologia 38: 437-495. Diatoms are the most species-rich group of algae. They are ecologically widespread and have global significance in the carbon and silicon cycles, and are used increasingly in ecological monitoring, paleoecological reconstruction, and stratigraphic corre lation. Despite this, the species taxonomy of diatoms is messy and lacks a satisfactory practical or conceptual basis, hindering further advances in all aspects of diatom biology. Several model systems have provided valuable insights into the nature of diatom species. A consilience of evidence (the 'Waltonian species concept') from morphology, genetic data, mating systems, physiology, ecology, and crossing behavior suggests that species boundaries have traditionally been drawn too broadly; many species probably contain several reproductively isolated entities that are worth taxonomic recognition at species level. Pheno typic plasticity, although present, is not a serious problem for diatom taxonomy. However, although good data are now available for demes living in sympatry, we have barely begun to extend studies to take into account variation between allopatric demes, which is necessary if a global taxonomy is to be built. Endemism has been seriously underestimated among diatoms, but biogeographical and stratigraphic patterns are difficult to discern, because of a lack of trustwOlthy data and because the taxonomic concepts of many authors are undocumented. Morphological diversity may often be a largely accidental consequence of physiological differentiation, as a result of the peculiarities of diatom cell division and the life cycle. -
Improved Protocol for the Preparation of Tetraselmis Suecica Axenic
36 The Open Biotechnology Journal, 2010, 4, 36-46 Open Access Improved Protocol for the Preparation of Tetraselmis suecica Axenic Culture and Adaptation to Heterotrophic Cultivation Mojtaba Azma1, Rosfarizan Mohamad1, Raha Abdul Rahim2 and Arbakariya B. Ariff*,1 1Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia 2Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia Abstract: The effectiveness of various physical and chemical methods for the removal of contaminants from the microal- gae, Tetraselmis suecica, culture was investigated. The information obtained was used as the basis for the development of improved protocol for the preparation of axenic culture to be adapted to heterotrophic cultivation. Repeated centrifugation and rinsing effectively removed the free bacterial contaminants from the microalgae culture while sonication helped to loosen up the tightly attached bacterial contaminants on the microalgae cells. Removal of bacterial spores was accom- plished using a mixture of two antibiotics, 5 mg/mL vancomycine and 10 mg/mL neomycine. Walne medium formulation with natural seawater was preferred for the enhancement of growth of T. suecica. Adaptation of growth from photoautot- rophic to heterotrophic conditions was achieved by the repeated cultivation of photoautotrophic culture with sequential reduction in illumination time, and finally the culture was inoculated into the medium containing 10 g/L glucose, incu- bated in total darkness to obtain heterotrophic cells. Changes in the morphology and composition of T. suecica cells dur- ing the adaptation from photoautotrophic to heterotrophic condition, as examined under Transmission Electron Micro- scope, were also reported. -
Gc – Ms) Analysis
Academic Sciences International Journal of Pharmacy and Pharmaceutical Sciences ISSN- 0975-1491 Vol 5, Issue 3, 2013 Research Article EVALUATION OF ANTIMICROBIAL METABOLITES FROM MARINE MICROALGAE TETRASELMIS SUECICA USING GAS CHROMATOGRAPHY – MASS SPECTROMETRY (GC – MS) ANALYSIS V. DOOSLIN MERCY BAI1 AND S. KRISHNAKUMAR2* 1Department of Biomedical Engineering Rajiv Gandhi College of Enginnering and Technology.Puducherry 607402, India, 2Department of Biomedical Engineering, Sathyabama University, Chennai 600119, Tamil Nadu, India. Email: [email protected] Received: 15 Mar 2013, Revised and Accepted: 23 Apr 2013 ABSTRACT Objective: Marine natural products have been considered as one of the most promising sources of antimicrobial compounds in recent years. Marine microalgae Tetraselmis suecica (Kylin) was selected for the present antimicrobial investigation. Methods: The effects of pH, temperature and salinity were tested for the growth of microalgae. The antibacterial effect of different solvent extracts of marine microalgae Tetraselmis suecica against selected human pathogens such as Vibrio cholerae, Klebsiella pneumoniae, Escherichia coli, Pseudomonas aeruginosa, Salmonella sp, Proteus sp., Streptococcus pyogens, Staphylococcus aureus, Bacillus megaterium and Bacillus subtilis were investigated. The GC-MS analysis was done with standard specification to identify the active principle of bioactive compound. Results: The highest cell density was observed when the medium adjusted with 40ppt of salinity in pH of 9.0 at 250C during 9th day of incubation period. Methanol + chloroform (1:1) crude extract of Tetraselmis suecica was confirmed considerable activity against gram negative bacteria than gram positive human pathogen. GC-MS analysis revealed the presence of unique chemical compounds like 1-ethyl butyl 3-hexyl hydroperoxide (MW: 100) and methyl heptanate (MW: 186) respectively for the crude extract of Tetraselmis suecica.