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Characterizing Copepods and Its Food Variability in the Arabian Sea
CHARACTERIZING COPEPODS AND ITS FOOD VARIABILITY IN THE ARABIAN SEA Thesis Submitted to the Goa University For the Degree of Doctor of Philosophy In Marine Sciences By Ms. Analiza Maria D’souza Under the guidance of Dr. Mangesh Gauns Department of Marine Science Goa University, Goa 403206 April 2018 CHARACTERIZING COPEPODS AND ITS FOOD VARIABILITY IN THE ARABIAN SEA Thesis Submitted to the Goa University For the Degree of Doctor of Philosophy In Marine Sciences BY Analiza Maria D’souza Under the guidance of Dr. Mangesh U. Gauns SCHOOL OF EARTH, OCEAN AND ATMOSPHERIC SCIENCES Goa University, Goa 403206 APRIL 2018 Dedicated to Saint Francis and to my beloved family Dedicated to Saint Francis and to my beloved family Declaration As required under the university ordinance OB9.9, I state that the present thesis entitled “Characterizing copepods and its food variability in the Arabian Sea” is my original contribution and the same has not been submitted on any previous occasion. To the best of my knowledge the present study is the first comprehensive work of its kind from the area mentioned. The literature related to the problem of investigation has been cited. Due acknowledgements have been made wherever facilities and suggestions have been availed of. Place: Date: (Analiza Maria D’souza) STATEMENT I hereby state that all necessary corrections/modifications as advised by the examiners for my Ph.D thesis entitled “Characterizing copepods and its food variability in the Arabian Sea” are incorporated. Analiza D’souza ACKNOWLEDGEMENTS “Sing the praises of the LORD, you His faithful people, praise his holy name (Psalms 30:4).” I am completely obliged to the ALMIGHTY Lord for fulfilling my voyage of the doctoral degree. -
Tesis Estructura Comunitaria De Copepodos .Pdf
Universidad de Concepción Dirección de Postgrado Facultad de Ciencias Naturales y Oceanográficas Programa de Magister en Ciencias mención Oceanografía Estructura comunitaria de copépodos pelágicos asociados a montes submarinos de la Dorsal Juan Fernández (32-34°S) en el Pacífico Sur Oriental Tesis para optar al grado de Magíster en Ciencias con mención en Oceanografía PAMELA ANDREA FIERRO GONZÁLEZ CONCEPCIÓN-CHILE 2019 Profesora Guía: Pamela Hidalgo Díaz Departamento de Oceanografía, Facultad de Ciencias Naturales y Oceanográficas Universidad de Concepción Profesor Co-guía: Rubén Escribano Departamento de Oceanografía, Facultad de Ciencias Naturales y Oceanográficas Universidad de Concepción La Tesis de “Magister en Ciencias con mención en Oceanografía” titulada “Estructura comunitaria de copépodos pelágicos asociados a montes submarinos de la Dorsal Juan Fernández (32-34°S) en el Pacífico sur oriental”, de la Srta. “PAMELA ANDREA FIERRO GONZÁLEZ” y realizada bajo la Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, ha sido aprobada por la siguiente Comisión de Evaluación: Dra. Pamela Hidalgo Díaz Profesora Guía Universidad de Concepción Dr. Rubén Escribano Profesor Co-Guía Universidad de Concepción Dr. Samuel Hormazábal Miembro de la Comisión Evaluadora Pontificia Universidad Católica de Valparaíso Dr. Fabián Tapia Director Programa de Magister en Oceanografía Universidad de Concepción ii A Juan Carlos y Sebastián iii AGRADECIMIENTOS Agradezco a quienes con su colaboración y apoyo hicieron posible el desarrollo y término de esta tesis. En primer lugar, agradezco a los miembros de mi comisión de tesis. A mi profesora guía, Dra. Pamela Hidalgo, por apoyarme y guiarme en este largo camino de formación académica, por su gran calidad humana, contención y apoyo personal. -
Subclase Copepoda (Crustacea: Maxillopoda)
Rev. Biol. Trop. 49. Supl. 2: 115-133, 2001 www.rtb.ac.cr, www.ucr.ac.cr Biodiversidad marina de Costa Rica, los microcrustáceos: Subclase Copepoda (Crustacea: Maxillopoda) 1-2-3 Alvaro Morales-Ramírez 1Centro de Investigación en Ciencias del May y Limnología (CIMAR), Universidad de Costa Rica, 2060 San José, Costa Rica. Fax (506) 207 3280. 2Escuela de Biología. Universidad de Costa Rica, 2060 San José, Costa Rica. 3Sede del Pacífico, Universidad de Costa Rica, Costa Rica. Correo electrónico: [email protected] (Recibido 01-II-2000. Corregido 31-VIII-2000. Aceptado 07-II-2001) Abstract : This report is part of a series that summarizes the species and localities of Costa Rican marine taxa. A review of the literature on copepods, both pelagic and benthic for the Pacific and Caribbean coast of Costa Rica, includes eigthy species. Sixty seven pelagic species have been found, distributed between sixteen calanoid, one cyclopoid, three harparticoid and four poecilostomatoid families. Moreover, thirteen benthonic species distributed into six families, all harparticoids, are reported. Among the pelagic families, Pontellidae has six species, while Paracalanidae and Eucalanidae had five each. Other families, like Calanidae, Pseudodiaptomidae and Acartiidae had four species and most families only one. Forty five species are reported only for the Pacific coast, thirteen for the Caribbean coast, only nine species occurred in both coasts; being a direct consequence of the more intensive research effort in the Pacific. Pelagic copepod biodiversity reflects different oceanographic conditions in both coasts.Typical estuarine species were found in the lower region of the Gulf of Nicoya, while a mixture of estuarine and oceanic species were found in Golfo Dulce. -
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific Dissertation by Sofya Mudrova In Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy of Science King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia November, 2018 2 EXAMINATION COMMITTEE PAGE The dissertation of Sofya Mudrova is approved by the examination committee. Committee Chairperson: Dr. Michael Lee Berumen Committee Co-Chair: Dr. Viatcheslav Ivanenko Committee Members: Dr. James Davis Reimer, Dr. Takashi Gojobori, Dr. Manuel Aranda Lastra 3 COPYRIGHT PAGE © November, 2018 Sofya Mudrova All rights reserved 4 ABSTRACT Molecular diversity, phylogeny and biogeographic patterns of crustacean copepods associated with scleractinian corals of the Indo-Pacific Sofya Mudrova Biodiversity of coral reefs is higher than in any other marine ecosystem, and significant research has focused on studying coral taxonomy, physiology, ecology, and coral-associated fauna. Yet little is known about symbiotic copepods, abundant and numerous microscopic crustaceans inhabiting almost every living coral colony. In this thesis, I investigate the genetic diversity of different groups of copepods associated with reef-building corals in distinct parts of the Indo-Pacific; determine species boundaries; and reveal patterns of biogeography, endemism, and host-specificity in these symbiotic systems. A non-destructive method of DNA extraction allowed me to use an integrated approach to conduct a diversity assessment of different groups of copepods and to determine species boundaries using molecular and taxonomical methods. Overall, for this thesis, I processed and analyzed 1850 copepod specimens, representing 269 MOTUs collected from 125 colonies of 43 species of scleractinian corals from 11 locations in the Indo-Pacific. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Orden POECILOSTOMATOIDA Manual
Revista IDE@ - SEA, nº 97 (30-06-2015): 1-15. ISSN 2386-7183 1 Ibero Diversidad Entomológica @ccesible www.sea-entomologia.org/IDE@ Clase: Maxillopoda: Copepoda Orden POECILOSTOMATOIDA Manual CLASE MAXILLOPODA: SUBCLASE COPEPODA: Orden Poecilostomatoida Antonio Melic Sociedad Entomológica Aragonesa (SEA). Avda. Francisca Millán Serrano, 37; 50012 Zaragoza [email protected] 1. Breve definición del grupo y principales caracteres diagnósticos El orden Poecilostomatoida Thorell, 1859 tiene una posición sistemática discutida. Tradicionalmente ha sido considerado un orden independiente, dentro de los 10 que conforman la subclase Copepoda; no obstante, algunos autores consideran que no existen diferencias suficientes respeto al orden Cyclopoida, del que vendrían a ser un suborden (Stock, 1986 o Boxshall & Halsey, 2004, entre otros). No obstante, en el presente volumen se ha considerado un orden independiente y válido. Antes de entrar en las singularidades del orden es preciso tratar sucintamente la morfología, ecolo- gía y biología de Copepoda, lo que se realiza en los párrafos siguientes. 1.1. Introducción a Copepoda Los copépodos se encuentran entre los animales más abundantes en número de individuos del planeta. El plancton marino puede alcanzar proporciones de un 90 por ciento de copépodos respecto a la fauna total presente. Precisamente por su número y a pesar de su modesto tamaño (forman parte de la micro y meiofauna) los copépodos representan una papel fundamental en el funcionamiento de los ecosistemas marinos. En su mayor parte son especies herbívoras –u omnívoras– y por lo tanto transformadoras de fito- plancton en proteína animal que, a su vez, sirve de alimento a todo un ejército de especies animales, inclu- yendo gran número de larvas de peces. -
A New Species of Clausidiidae (Copepoda, Poecilostomatoida) Associated with the Bivalve Ruditapes Philippinarum in Korea
Cah. Biol. Mar. (1996)37: 1-6 A new species of Clausidiidae (Copepoda, Poecilostomatoida) associated with the bivalve Ruditapes philippinarum in Korea Il-Hoi KIM(1) AND Jan H. STOCK(2) (1)Department of Biology, Kangreung National University, Kangreung, 210-702, South Korea (2)c/o Institute of Systematics and Population Biology, University of Amsterdam, P.O.Box 94766, 1090 GT Amsterdam, The Netherlands Abstract : A small-sized clausidiid copepod was found associated with the commercially important bivalve, Ruditapes phi- lippinarum, from a Korean coastal lagoon. Since it resembles morphologically a European form known as Hersiliodes late- ricius, it is attributed to a new species, H. exiguus n. sp., of the same genus. The uneasy distinction between the genera Hersiliodes and the very similar Hemicyclops is discussed. Résumé : Un Copépode de petite taille a été découvert associé à un bivalve commercialement important, Ruditapes philip- pinarum, provenant d'un lagon côtier coréen. Parce qu'il ressemble morphologiquement à une forme européenne connue comme Hersiliodes latericius, il a été attribué au même genre, avec le nom d'espèce H. exiguus n. sp. La distinction délica- te entre les genres Hersiliodes et Hemicyclops, très similaires l'un de l'autre, est discutée. Keywords : Copepoda Clausidiidae, Hersiliodes exiguus n. sp., Hemicyclops, Ruditapes, Korea Introduction and 1 S (paratypes, partially dissected). Holotype, allotype The short-necked clam, Ruditapes philippinarum and 4 paratypes preserved in Zoölogisch Museum (Adams & Reeve, 1850) is an edible and commercially Amsterdam (cat. no. ZMA Co. 201.813), 2 9 and 1 3 kept important bivalve, originally inhabiting southeast Asian and by I.-H. -
A Trait Database for Marine Copepods
Downloaded from orbit.dtu.dk on: Oct 09, 2021 A trait database for marine copepods Brun, Philipp Georg; Payne, Mark; Kiørboe, Thomas Published in: Earth System Science Data Link to article, DOI: 10.5194/essd-9-99-2017 Publication date: 2017 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Brun, P. G., Payne, M., & Kiørboe, T. (2017). A trait database for marine copepods. Earth System Science Data, 9(1), 99-113. https://doi.org/10.5194/essd-9-99-2017 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Earth Syst. Sci. Data, 9, 99–113, 2017 www.earth-syst-sci-data.net/9/99/2017/ doi:10.5194/essd-9-99-2017 © Author(s) 2017. CC Attribution 3.0 License. A trait database for marine copepods Philipp Brun, Mark R. Payne, and Thomas Kiørboe Centre for Ocean Life, National Institute of Aquatic Resources, Technical University of Denmark, Kavalergården 6, 2920 Charlottenlund, Denmark Correspondence to: Philipp Brun ([email protected]) Received: 12 July 2016 – Discussion started: 26 July 2016 Revised: 13 December 2016 – Accepted: 26 January 2017 – Published: 14 February 2017 Abstract. -
Myzomolgus Sipunculensis Sp. Nov. (Cyclopoida, (Cyclopoida, (Cyclopoida, Catiniidae), Catiniidae), a New Copepod Associated
Myzomolgus sipunculensis sp. nov. (Cyclopoida, Catiniidae), a new copepod associated with sipunculan worms from Brazil Terue C. Kihara 1; Tagea K. S. Björnberg 2 & Gisele Y. Kawauchi 3 1 Departamento de Zoologia, Universidade de São Paulo. Rua do Matão, Travessa 14, 101, São Paulo, São Paulo, Brasil. E-mail: [email protected] 2 Centro de Biologia Marinha, Universidade de São Paulo. Caixa Postal 71, 11600-970 São Sebastião, São Paulo, Brasil. 3 Department of Organismic and Evolutionary Biology, Harvard University. 16 Divinity Avenue, BioLabs, room 1119, Cambridge, MA 02138, USA. ABSTRACT. Catiniid copepods are characterized by the presence of a pedunculate sucker on the antenna. Four genera are currently included in the family Catiniidae: Catinia, Cotylemyzon, Cotylomolgus and Myzomolgus, the most speciose. Within the framework of the Special Research Program “Conservation and Sustainable Use of the Biodiversity of the State of São Paulo – Biota/FAPESP”, a new species of Myzomolgus was found as an external associate of Sipunculus nudus and S. phalloides phalloides. The sipunculan worms were collected during the low tide in Araçá Beach, State of São Paulo, Brazil (23º49’02”S, 45º24’19”W). The new species differs from its three congeners, namely M. stupendus from France and M. tenuis and M. orientalis from Korea, by the peculiar ornamen- tation of the third antennal segment, morphology of mandible and leg 6 and presence of denticulate area between maxillipeds. The description of this new species raises to four the number of catiniid species (one of Catinia and two of Myzomolgus) associated with the widely distributed S. nudus. In Brazil, this is the first record of Myzomolgus and the second species associated with sipunculan worms (a new species of Catinia found on S. -
Tesis Variabilidad Oceanográfica Espacialprog
Universidad de Concepción Dirección de Postgrado Facultad de Ciencias Naturales y Oceanográficas Programa de Doctorado en Oceanografía Variabilidad oceanográfica espacial y su impacto sobre la estructura comunitaria, filogeografía y biogeoquímica del zooplancton pelágico en el Pacífico Suroriental CAROLINA ANDREA GONZÁLEZ ESPINOZA CONCEPCIÓN-CHILE 2019 Profesor Guía: Rubén Escribano Veloso Profesor Co-guía: Pedro Victoriano Departamento de Oceanografía Facultad de Ciencias Naturales y Oceanográficas Universidad de Concepción Universidad de Concepción Dirección de Postgrado La Tesis de “Doctorado en Oceanografía” titulada “Variabilidad oceanográfica espacial y su impacto sobre la estructura comunitaria, filogeografía y biogeoquímica del zooplancton pelágico en el Pacífico Sur Oriental”, del Srta. CAROLINA GONZÁLEZ y realizada bajo la Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, ha sido aprobada por la siguiente Comisión de Evaluación: Dr. Rubén Escribano V. Profesor Guía Universidad de Concepción, Chile ____________________________ Dr. Pedro Victoriano S. Profesor Co-guía Universidad de Concepción, Chile ____________________________ Dr. Osvaldo Ulloa Miembro Comité de Tesis Universidad de Concepción, Chile ____________________________ Dra. Peter von Dassow Miembro Comité de Tesis Pontificia Universidad Católica, Chile ____________________________ Dr. Sylvain Faugeron Evaluador Externo ____________________________ Pontificia Universidad Católica, Chile Dra. Pamela Hidalgo Directora Programas de Postgrados -
Title Studies on the Phylogenetic Implications of Ontogenetic
Studies on the Phylogenetic Implications of Ontogenetic Title Features in the Poecilostome Nauplii (Copepoda : Cyclopoida) Author(s) Izawa, Kunihiko PUBLICATIONS OF THE SETO MARINE BIOLOGICAL Citation LABORATORY (1987), 32(4-6): 151-217 Issue Date 1987-12-26 URL http://hdl.handle.net/2433/176145 Right Type Departmental Bulletin Paper Textversion publisher Kyoto University Studies on the Phylogenetic Implications of Ontogenetic Features in the Poecilostome Nauplii (Copepoda: Cyclopoida) By Kunihiko Izawa Faculty ofBioresources, Mie University, Tsu, Mie 514, Japan With Text-figures 1-17 and Tables 1-3 Introduction The Copepoda includes a number of species that are parasitic or semi-parasitic onjin various aquatic animals (see Wilson, 1932). They live in association with par ticular hosts and exhibit various reductive tendencies (Gotto, 1979; Kabata, 1979). The reductive tendencies often appear as simplification and/or reduction of adult appendages, which have been considered as important key characters in their tax onomy and phylogeny (notably Wilson, op. cit.; Kabata, op. cit.). Larval morpholo gy has not been taken into taxonomic and phylogenetic consideration. This is par ticularly unfortunate when dealing with the poecilostome Cyclopoida, which include many species with transformed adults. Our knowledge on the ontogeny of the Copepoda have been accumulated through the efforts of many workers (see refer ences), but still it covers only a small part of the Copepoda. History of study on the nauplii of parasitic copepods goes back to the 1830's, as seen in the description of a nauplius of Lernaea (see Nordmann, 1832). I have been studying the ontogeny of the parasitic and semi-parasitic Copepoda since 1969 and have reported larval stages of various species (Izawa, 1969; 1973; 1975; 1986a, b). -
A Trait Database for Marine Copepods
Discussions Earth Syst. Sci. Data Discuss., doi:10.5194/essd-2016-30, 2016 Earth System Manuscript under review for journal Earth Syst. Sci. Data Science Published: 26 July 2016 c Author(s) 2016. CC-BY 3.0 License. Open Access Open Data 1 A trait database for marine copepods 2 Philipp Brun1, Mark R. Payne1 and Thomas Kiørboe1 3 [1]{ Centre for Ocean Life, National Institute of Aquatic Resources, Technical University of 4 Denmark, DK-2920 Charlottenlund, Denmark } 5 Correspondence to: P. Brun ([email protected]) 6 Abstract 7 The trait-based approach is gaining increasing popularity in marine plankton ecology but the 8 field urgently needs more and easier accessible trait data to advance. We compiled trait 9 information on marine pelagic copepods, a major group of zooplankton, from the published 10 literature and from experts, and organised the data into a structured database. We collected 11 9345 records for 14 functional traits. Particular attention was given to body size, feeding 12 mode, egg size, spawning strategy, respiration rate and myelination (presence of nerve 13 sheathing). Most records were reported on the species level, but some phylogenetically 14 conserved traits, such as myelination, were reported on higher taxonomic levels, allowing the 15 entire diversity of around 10 800 recognized marine copepod species to be covered with few 16 records. Besides myelination, data coverage was highest for spawning strategy and body size 17 while information was more limited for quantitative traits related to reproduction and 18 physiology. The database may be used to investigate relationships between traits, to produce 19 trait biogeographies, or to inform and validate trait-based marine ecosystem models.