A New Species of Clausidiidae (Copepoda, Poecilostomatoida) Associated with the Bivalve Ruditapes Philippinarum in Korea
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The Plankton Lifeform Extraction Tool: a Digital Tool to Increase The
Discussions https://doi.org/10.5194/essd-2021-171 Earth System Preprint. Discussion started: 21 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data The Plankton Lifeform Extraction Tool: A digital tool to increase the discoverability and usability of plankton time-series data Clare Ostle1*, Kevin Paxman1, Carolyn A. Graves2, Mathew Arnold1, Felipe Artigas3, Angus Atkinson4, Anaïs Aubert5, Malcolm Baptie6, Beth Bear7, Jacob Bedford8, Michael Best9, Eileen 5 Bresnan10, Rachel Brittain1, Derek Broughton1, Alexandre Budria5,11, Kathryn Cook12, Michelle Devlin7, George Graham1, Nick Halliday1, Pierre Hélaouët1, Marie Johansen13, David G. Johns1, Dan Lear1, Margarita Machairopoulou10, April McKinney14, Adam Mellor14, Alex Milligan7, Sophie Pitois7, Isabelle Rombouts5, Cordula Scherer15, Paul Tett16, Claire Widdicombe4, and Abigail McQuatters-Gollop8 1 10 The Marine Biological Association (MBA), The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. 2 Centre for Environment Fisheries and Aquacu∑lture Science (Cefas), Weymouth, UK. 3 Université du Littoral Côte d’Opale, Université de Lille, CNRS UMR 8187 LOG, Laboratoire d’Océanologie et de Géosciences, Wimereux, France. 4 Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. 5 15 Muséum National d’Histoire Naturelle (MNHN), CRESCO, 38 UMS Patrinat, Dinard, France. 6 Scottish Environment Protection Agency, Angus Smith Building, Maxim 6, Parklands Avenue, Eurocentral, Holytown, North Lanarkshire ML1 4WQ, UK. 7 Centre for Environment Fisheries and Aquaculture Science (Cefas), Lowestoft, UK. 8 Marine Conservation Research Group, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK. 9 20 The Environment Agency, Kingfisher House, Goldhay Way, Peterborough, PE4 6HL, UK. 10 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, AB11 9DB, UK. -
Diversity and Life-Cycle Analysis of Pacific Ocean Zooplankton by Video Microscopy and DNA Barcoding: Crustacea
Journal of Aquaculture & Marine Biology Research Article Open Access Diversity and life-cycle analysis of Pacific Ocean zooplankton by video microscopy and DNA barcoding: Crustacea Abstract Volume 10 Issue 3 - 2021 Determining the DNA sequencing of a small element in the mitochondrial DNA (DNA Peter Bryant,1 Timothy Arehart2 barcoding) makes it possible to easily identify individuals of different larval stages of 1Department of Developmental and Cell Biology, University of marine crustaceans without the need for laboratory rearing. It can also be used to construct California, USA taxonomic trees, although it is not yet clear to what extent this barcode-based taxonomy 2Crystal Cove Conservancy, Newport Coast, CA, USA reflects more traditional morphological or molecular taxonomy. Collections of zooplankton were made using conventional plankton nets in Newport Bay and the Pacific Ocean near Correspondence: Peter Bryant, Department of Newport Beach, California (Lat. 33.628342, Long. -117.927933) between May 2013 and Developmental and Cell Biology, University of California, USA, January 2020, and individual crustacean specimens were documented by video microscopy. Email Adult crustaceans were collected from solid substrates in the same areas. Specimens were preserved in ethanol and sent to the Canadian Centre for DNA Barcoding at the Received: June 03, 2021 | Published: July 26, 2021 University of Guelph, Ontario, Canada for sequencing of the COI DNA barcode. From 1042 specimens, 544 COI sequences were obtained falling into 199 Barcode Identification Numbers (BINs), of which 76 correspond to recognized species. For 15 species of decapods (Loxorhynchus grandis, Pelia tumida, Pugettia dalli, Metacarcinus anthonyi, Metacarcinus gracilis, Pachygrapsus crassipes, Pleuroncodes planipes, Lophopanopeus sp., Pinnixa franciscana, Pinnixa tubicola, Pagurus longicarpus, Petrolisthes cabrilloi, Portunus xantusii, Hemigrapsus oregonensis, Heptacarpus brevirostris), DNA barcoding allowed the matching of different life-cycle stages (zoea, megalops, adult). -
Subclase Copepoda (Crustacea: Maxillopoda)
Rev. Biol. Trop. 49. Supl. 2: 115-133, 2001 www.rtb.ac.cr, www.ucr.ac.cr Biodiversidad marina de Costa Rica, los microcrustáceos: Subclase Copepoda (Crustacea: Maxillopoda) 1-2-3 Alvaro Morales-Ramírez 1Centro de Investigación en Ciencias del May y Limnología (CIMAR), Universidad de Costa Rica, 2060 San José, Costa Rica. Fax (506) 207 3280. 2Escuela de Biología. Universidad de Costa Rica, 2060 San José, Costa Rica. 3Sede del Pacífico, Universidad de Costa Rica, Costa Rica. Correo electrónico: [email protected] (Recibido 01-II-2000. Corregido 31-VIII-2000. Aceptado 07-II-2001) Abstract : This report is part of a series that summarizes the species and localities of Costa Rican marine taxa. A review of the literature on copepods, both pelagic and benthic for the Pacific and Caribbean coast of Costa Rica, includes eigthy species. Sixty seven pelagic species have been found, distributed between sixteen calanoid, one cyclopoid, three harparticoid and four poecilostomatoid families. Moreover, thirteen benthonic species distributed into six families, all harparticoids, are reported. Among the pelagic families, Pontellidae has six species, while Paracalanidae and Eucalanidae had five each. Other families, like Calanidae, Pseudodiaptomidae and Acartiidae had four species and most families only one. Forty five species are reported only for the Pacific coast, thirteen for the Caribbean coast, only nine species occurred in both coasts; being a direct consequence of the more intensive research effort in the Pacific. Pelagic copepod biodiversity reflects different oceanographic conditions in both coasts.Typical estuarine species were found in the lower region of the Gulf of Nicoya, while a mixture of estuarine and oceanic species were found in Golfo Dulce. -
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific Dissertation by Sofya Mudrova In Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy of Science King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia November, 2018 2 EXAMINATION COMMITTEE PAGE The dissertation of Sofya Mudrova is approved by the examination committee. Committee Chairperson: Dr. Michael Lee Berumen Committee Co-Chair: Dr. Viatcheslav Ivanenko Committee Members: Dr. James Davis Reimer, Dr. Takashi Gojobori, Dr. Manuel Aranda Lastra 3 COPYRIGHT PAGE © November, 2018 Sofya Mudrova All rights reserved 4 ABSTRACT Molecular diversity, phylogeny and biogeographic patterns of crustacean copepods associated with scleractinian corals of the Indo-Pacific Sofya Mudrova Biodiversity of coral reefs is higher than in any other marine ecosystem, and significant research has focused on studying coral taxonomy, physiology, ecology, and coral-associated fauna. Yet little is known about symbiotic copepods, abundant and numerous microscopic crustaceans inhabiting almost every living coral colony. In this thesis, I investigate the genetic diversity of different groups of copepods associated with reef-building corals in distinct parts of the Indo-Pacific; determine species boundaries; and reveal patterns of biogeography, endemism, and host-specificity in these symbiotic systems. A non-destructive method of DNA extraction allowed me to use an integrated approach to conduct a diversity assessment of different groups of copepods and to determine species boundaries using molecular and taxonomical methods. Overall, for this thesis, I processed and analyzed 1850 copepod specimens, representing 269 MOTUs collected from 125 colonies of 43 species of scleractinian corals from 11 locations in the Indo-Pacific. -
Veronica Fernandes
Mesozooplankton Community Structure: Its Seasonal Shifts, Grazing and Growth Potential in the Bay of Bengal -60 -30 0 30 60 0-40 40-200 200-300 300-500 500-1000 0-MLD TT-BT BT-300 m 300-500 m 500-1000 m 9 11 13 15 17 19 ■ 0-MLD ■ TT-BT ❑ 200- 300 • 300- 500 ■ 500- 1000 H' CBI CB2 CB3 CB4 CBS Thesis submitted to Goa University for the degree of 'Doctor of Philosophy in-Marine Sciences Veronica Fernandes National Institute of Oceanography Council of Scientific and Industrial Research Dona Paula, Goa- 403 004, India June 2008 CERTIFICATE This is to certify that Ms. Veronica Fernandes has duly completed the thesis entitled `Mesozooplankton community Structure: Its seasonal shifts, grazing and growth potential in the Bay of Bengal ' under my supervision for the award of the degree of Doctor of Philosophy. This thesis being submitted to the Goa University, Taleigao Plateau, Goa for the award of the degree of Doctor of Philosophy in Marine Sciences is based on original studies carried out by her. The thesis or any part thereof has not been previously submitted for any other degree or diploma in any Universities or Institutions. N. Ramaiah Research Guide Scientist Date: June 16, 2008 National Institute of Oceanography Place: Dona Paula Dona Paula, Goa-403 004 -44 jr- yikazit N t e. \, t' P1114 /414 o , 77 Ko-ce'dP 578 F EA/ e--5 4ci 2 DECLARATION As required under the University Ordinance 0.19.8 (iv), I hereby declare that the present thesis entitled `Mesozooplankton community structure: Its seasonal shifts, grazing and growth potential in the Bay of Bengal ' is my original work carried out in the National Institute of Oceanography, Dona-Paula, Goa and the same has not been submitted in part or in full elsewhere for any other degree or diploma. -
Orden POECILOSTOMATOIDA Manual
Revista IDE@ - SEA, nº 97 (30-06-2015): 1-15. ISSN 2386-7183 1 Ibero Diversidad Entomológica @ccesible www.sea-entomologia.org/IDE@ Clase: Maxillopoda: Copepoda Orden POECILOSTOMATOIDA Manual CLASE MAXILLOPODA: SUBCLASE COPEPODA: Orden Poecilostomatoida Antonio Melic Sociedad Entomológica Aragonesa (SEA). Avda. Francisca Millán Serrano, 37; 50012 Zaragoza [email protected] 1. Breve definición del grupo y principales caracteres diagnósticos El orden Poecilostomatoida Thorell, 1859 tiene una posición sistemática discutida. Tradicionalmente ha sido considerado un orden independiente, dentro de los 10 que conforman la subclase Copepoda; no obstante, algunos autores consideran que no existen diferencias suficientes respeto al orden Cyclopoida, del que vendrían a ser un suborden (Stock, 1986 o Boxshall & Halsey, 2004, entre otros). No obstante, en el presente volumen se ha considerado un orden independiente y válido. Antes de entrar en las singularidades del orden es preciso tratar sucintamente la morfología, ecolo- gía y biología de Copepoda, lo que se realiza en los párrafos siguientes. 1.1. Introducción a Copepoda Los copépodos se encuentran entre los animales más abundantes en número de individuos del planeta. El plancton marino puede alcanzar proporciones de un 90 por ciento de copépodos respecto a la fauna total presente. Precisamente por su número y a pesar de su modesto tamaño (forman parte de la micro y meiofauna) los copépodos representan una papel fundamental en el funcionamiento de los ecosistemas marinos. En su mayor parte son especies herbívoras –u omnívoras– y por lo tanto transformadoras de fito- plancton en proteína animal que, a su vez, sirve de alimento a todo un ejército de especies animales, inclu- yendo gran número de larvas de peces. -
Host Selection of the Symbiotic Copepod Clausidium Dissimile in Two Sympatric Populations of Ghost Shrimp
MARINE ECOLOGY PROGRESS SERIES Vol. 256: 151–159, 2003 Published July 17 Mar Ecol Prog Ser Host selection of the symbiotic copepod Clausidium dissimile in two sympatric populations of ghost shrimp J. L. Corsetti1, K. M. Strasser 2,* 1Department of Biology, University of Tampa, 401 W Kennedy Blvd., Tampa, Florida 33606, USA 2Biological Sciences Department, Ferris State University, 820 Campus Drive, ASC 2004, Big Rapids, Michigan 49307, USA ABSTRACT: Ghost shrimp, Lepidophthalmus louisianensis (Schmitt 1935) and Sergio trilobata (Biffar 1970) are 2 common burrowing decapod crustaceans in Tampa Bay, Florida, which affect the benthic community through bioturbation. The burrow also plays a crucial role in determining benthic com- munity structure, since it may house several symbionts, one of which is the copepod Clausidium dis- simile Wilson, 1921. This study was conducted to investigate factors that affect the density of C. dis- simile on ghost shrimp specimens both in the field and in the laboratory. Collections of L. louisianensis and S. trilobata were made over a 15 mo period to determine the prevalence of C. dis- simile in the field. Analysis of monthly field data showed that host shrimp (p = 0.0001), and sampling month (p = 0.0310) were significantly correlated with the host-size adjusted density of the symbiont C. dissimile, with more copepods preferring specimens of S. trilobata over L. louisianensis. Although host sex did not have a significant effect on host-size adjusted copepod density, percentage preva- lence of copepods was significantly higher for females than males in S. trilobata (p < 0.0001). Labora- tory experiments supported observations from the field in that C. -
Life History of the Copepod Hemicyclops Spinulosus (Poecilostomatoida, Clausidiidae) Associated with Crab Burrows with Notes On
Plankton Benthos Res 3(4): 189–201, 2008 Plankton & Benthos Research © The Plankton Society of Japan Life history of the copepod Hemicyclops spinulosus (Poecilostomatoida, Clausidiidae) associated with crab burrows with notes on male polymorphism and precopulatory mate guarding HIROSHI ITOH1 &SHUHEI NISHIDA2* 1 Suidosha Co. Ltd, 8–11–11 Ikuta, Tama, Kawasaki 214–0038, Japan 2 Ocean Research Institute, University of Tokyo, 1–15–1 Minamidai, Nakano, Tokyo 164–8639, Japan Received 9 January 2008; Accepted 30 May 2008 Abstract: A 25-month field survey was conducted to investigate the life cycle and seasonal population fluctuations in the poecilostomatoid copepod Hemicyclops spinulosus in the burrows of the ocypodid crab Macrophthalmus japonicus in the mud-flats of the Tama-River estuary, central Japan. On the basis of sample collections in the water column and from the crab burrows, it was confirmed that H. spinulosus is planktonic during the naupliar stages and settles on the bottom during the first copepodid stage to inhabit the burrows. Furthermore, the copepods’ reproduction took place mainly during early summer to autumn with a successive decrease from autumn to winter. A supplementary observation on the burrows of the polychaete Tylorrhynchus heterochaetus suggested that these burrows are another important habi- tat of H. spinulosus. There were additional discoveries of male polymorphism and precopulatory mate guarding behav- ior by males, suggesting an adaptation in the reproductive strategy of this copepod to their narrow habitat spaces and low population densities, in contrast to the congeneric species H. gomsoensis, which co-occurs in the estuary but attains much larger population sizes and is associated with hosts having much larger burrow spaces. -
Copepoda, Cyclopoida, Clausidiidae) from Korea
Korean J. Syst. Zool. Vol. 26, No. 3: 279-293, November 2010 Three New Species of Hemicyclops (Copepoda, Cyclopoida, Clausidiidae) from Korea Seong Yong Moon and Il-Hoi Kim* Department of Biology, Kangnung National University, Gangneung 210-702, Korea ABSTRACT Three new species of Hemicyclops, H. parilis, H. nasutus and H. membranatus are described from Korean coasts. Hemicyclops parilis n. sp. is closely similar to H. gomsoensis Ho and Kim, but distinguishable from the latter species by having the different shape of genital double somite and spermatophore. Hemicyclops nasutus n. sp. is distinguishable from congeners by having five setae on the first segment of antennule and the ratio 4.26 : 1 of the length to width of caudal ramus. Hemicyclops membranatus n. sp. is characterized by the possession of the membranous fringe along margins of cephalothorax and a claw on the third antennal segment. Keywords: Hemicyclops, sibling species, association, Crustacea, Polychaeta INTRODUCTION Yellow Sea coasts of Korea. One of three described species was collected from crustacean burrows, and other two were Hemicyclops Boeck, 1873 is the largest and primitive genus extracted from washings of polychaetes dug out on beaches. in the family Clausidiidae. Species of this genus are diverse Specimens of Hemicyclops gomsoensis Ho and Kim, 1991, ecologically, with some of them living free but mostly in which were examined for a comparison with H. parilis n. association with a great variety of marine invertebrates (Ka- sp., were collected from burrows of the thalassinidean cru- ranovic, 2008). Kim (2009) counted 38 species in Hemicy- stacean Upogebia major (De Haan) at Muchangpo (36�14′ clops including three species he described as new. -
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources http://www.dnr.sc.gov/marine/sertc/ Southeastern Regional Taxonomic Center Invertebrate Literature Library (updated 9 May 2012, 4056 entries) (1958-1959). Proceedings of the salt marsh conference held at the Marine Institute of the University of Georgia, Apollo Island, Georgia March 25-28, 1958. Salt Marsh Conference, The Marine Institute, University of Georgia, Sapelo Island, Georgia, Marine Institute of the University of Georgia. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Caprellidea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Gammaridea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1981). Stomatopods. FAO species identification sheets for fishery purposes. Eastern Central Atlantic; fishing areas 34,47 (in part).Canada Funds-in Trust. Ottawa, Department of Fisheries and Oceans Canada, by arrangement with the Food and Agriculture Organization of the United Nations, vols. 1-7. W. Fischer, G. Bianchi and W. B. Scott. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume II. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume III. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. -
Myzomolgus Sipunculensis Sp. Nov. (Cyclopoida, (Cyclopoida, (Cyclopoida, Catiniidae), Catiniidae), a New Copepod Associated
Myzomolgus sipunculensis sp. nov. (Cyclopoida, Catiniidae), a new copepod associated with sipunculan worms from Brazil Terue C. Kihara 1; Tagea K. S. Björnberg 2 & Gisele Y. Kawauchi 3 1 Departamento de Zoologia, Universidade de São Paulo. Rua do Matão, Travessa 14, 101, São Paulo, São Paulo, Brasil. E-mail: [email protected] 2 Centro de Biologia Marinha, Universidade de São Paulo. Caixa Postal 71, 11600-970 São Sebastião, São Paulo, Brasil. 3 Department of Organismic and Evolutionary Biology, Harvard University. 16 Divinity Avenue, BioLabs, room 1119, Cambridge, MA 02138, USA. ABSTRACT. Catiniid copepods are characterized by the presence of a pedunculate sucker on the antenna. Four genera are currently included in the family Catiniidae: Catinia, Cotylemyzon, Cotylomolgus and Myzomolgus, the most speciose. Within the framework of the Special Research Program “Conservation and Sustainable Use of the Biodiversity of the State of São Paulo – Biota/FAPESP”, a new species of Myzomolgus was found as an external associate of Sipunculus nudus and S. phalloides phalloides. The sipunculan worms were collected during the low tide in Araçá Beach, State of São Paulo, Brazil (23º49’02”S, 45º24’19”W). The new species differs from its three congeners, namely M. stupendus from France and M. tenuis and M. orientalis from Korea, by the peculiar ornamen- tation of the third antennal segment, morphology of mandible and leg 6 and presence of denticulate area between maxillipeds. The description of this new species raises to four the number of catiniid species (one of Catinia and two of Myzomolgus) associated with the widely distributed S. nudus. In Brazil, this is the first record of Myzomolgus and the second species associated with sipunculan worms (a new species of Catinia found on S. -
Brooding in Cocculiniform Limpets (Gastropoda) and Familial Distinctiveness of the Nucellicolidae (Copepoda): Misconceptions Reviewed from a Chitonophilid Perspective
Biological Journal of the Linnean Society, 2002, 75, 187-217. With 16 figures Brooding in cocculiniform limpets (Gastropoda) and familial distinctiveness of the Nucellicolidae (Copepoda): misconceptions reviewed from a chitonophilid perspective RONY HUYS FLS1*, PABLO J. LÓPEZ-GONZÁLEZ2, ELISA ROLDÁN3 a n d ÁNGEL A. LUQUE3 1Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, UK 2Departamento de Fisiología y Zoología, Facultad de Biología, Universidad de Sevilla, Reina Mercedes, 6,41012 Sevilla, Spain 3Laboratorio de Biología Marina, Departamento de Biología, Universidad Autónoma, 28049 Madrid, Spain Received 21 January 2001; accepted for publication 16 August 2001 Nauplii, copepodids and adults of a new mesoparasitic genus and species of Chitonophilidae,Lepetellicola brescia nii, are described from the palliai cavity of a deepwater cocculiniform limpet,Lepetella sierrai, collected in the Bay of Biscay and Gulf of Cádiz. Re-examination of the type material of the recently established Nucellicolidae revealed several important observational errors in the original description, such as the oversight of the rootlet system in the adult female and misinterpretations of the tagmosis and antennulary segmentation in the late copepodid. Lamb et al.’s (1996) criteria used to justify the familial distinctiveness of the Nucellicolidae are all invalid. The family is relegated to a junior synonym of the Chitonophilidae on the basis of overwhelming support provided by copepodid and adult morphology. The impact of heterochrony on the body plan of adults and developmental stages is discussed. Phylogenetic analysis supports a basal dichotomy dividing the Chitonophilidae into a mesoparasitic clade, utilizing exclusively polyplacophoran hosts, and a sisterclade grouping genera associated with chitons, prosobranch gas tropods and cocculiniform limpets.