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Porpomyces Submucidus (Hydnodontaceae, Basidiomycota), a New Species from Tropical China Based on Morphological and Molecular Evidence
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/283034971 Porpomyces submucidus (Hydnodontaceae, Basidiomycota), a new species from tropical China based on morphological and molecular evidence Article in Phytotaxa · October 2015 DOI: 10.11646/phytotaxa.230.1.5 CITATIONS READS 2 186 2 authors, including: Fang Wu Beijing Forestry University 73 PUBLICATIONS 838 CITATIONS SEE PROFILE All content following this page was uploaded by Fang Wu on 30 May 2018. The user has requested enhancement of the downloaded file. Phytotaxa 230 (1): 061–068 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.230.1.5 Porpomyces submucidus (Hydnodontaceae, Basidiomycota), a new species from tropical China based on morphological and molecular evidence FANG WU*, YUAN YUAN & CHANG-LIN ZHAO 1Institute of Microbiology, PO Box 61, Beijing Forestry University, Beijing 100083, China * Corresponding authors’ e-mails: [email protected] (FW) Abstract A new species is described from tropical China as Porpomyces submucidus on the basis of both morphological characters and molecular evidence. Phylogenetic analyse based on the ITS sequence, LSU sequence and the ITS+LSU sequence show that the new species belongs to Porpomyces and forms a distict clade as a sister group of Porpomyces mucidus. The fungus is characterized by thin, white to cream, resupinate basidiome with cottony to rhizomorphic margin, small pores (7–9 per mm), a monomitic hyphal structure with clamped generative hyphae, usually ampullated at most septa, and small, hyaline, thin-walled, ellipsoid basidiospores measuring 2.2–2.8 × 1.2–1.8 μm. -
Fungal Community Structural and Functional Responses to Disturbances in a North Temperate Forest
Fungal Community Structural and Functional Responses to Disturbances in a North Temperate Forest By Buck Tanner Castillo A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Ecology and Evolutionary Biology) in The University of Michigan 2020 Doctoral Committee: Professor Timothy Y. James, Co-Chair Professor Knute J. Nadelhoffer, Co-Chair Associate Professor Vincent Denef Professor Donald R. Zak Buck T. Castillo [email protected] ORCID ID: 0000-0002-5426-3821 ©Buck T. Castillo 2020 Dedication To my mother: Melinda Kathryn Fry For always instilling in me a sense of wonder and curiosity. For all the adventures down dirt roads and imaginations of centuries past. For all your love, Thank you. ii Acknowledgements Many people have guided, encouraged and inspired me throughout this process. I am eternally grateful for this network of support. First, I must thank my advisors, Knute and Tim for all of the excellent advice, unfaltering confidence, and high expectations they continually provided and set for me. My committee members, Don Zak and Vincent Denef, have been fantastic sources of insight, inspiration, and encouragement. Thank you all so much for your time, knowledge, and most of all for always making me believe in myself. A special thanks to two incredible researchers that were always great mentors who became even better friends: Luke Nave and Jim Le Moine. Jim Le Moine has taught me so much about being a critical thinker and was always more than generous with his time, insight, and advice. Thank you, Jim, for midnight walks through bugcamp and full bowls of delicious popping corn. -
Re-Thinking the Classification of Corticioid Fungi
mycological research 111 (2007) 1040–1063 journal homepage: www.elsevier.com/locate/mycres Re-thinking the classification of corticioid fungi Karl-Henrik LARSSON Go¨teborg University, Department of Plant and Environmental Sciences, Box 461, SE 405 30 Go¨teborg, Sweden article info abstract Article history: Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or Received 30 November 2005 hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single Received in revised form family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi 29 June 2007 are distributed among all major clades within Agaricomycetes. There is a relative consensus Accepted 7 August 2007 concerning the higher order classification of basidiomycetes down to order. This paper Published online 16 August 2007 presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative Corresponding Editor: families were identified from published phylogenies and preliminary analyses of unpub- Scott LaGreca lished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phy- logenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly Keywords: supported and three unsupported clades were identified. These clades are treated as fam- Agaricomycetes ilies in a Linnean hierarchical classification and each family is briefly described. Three ad- Basidiomycota ditional families not covered by the phylogenetic analyses are also included in the Molecular systematics classification. All accepted corticioid genera are either referred to one of the families or Phylogeny listed as incertae sedis. Taxonomy ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Introduction develop a downward-facing basidioma. -
Trechispora Yunnanensis Sp. Nov. (Hydnodontaceae, Basidiomycota) from China
Phytotaxa 424 (4): 253–261 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2019 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.424.4.5 Trechispora yunnanensis sp. nov. (Hydnodontaceae, Basidiomycota) from China TAI-MIN XU2, YU-HUI CHEN2 & CHANG-LIN ZHAO1,3* 1Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming 650224, P.R. China 2College of Life Sciences, Southwest Forestry University, Kunming 650224, P.R. China 3College of Biodiversity Conservation, Southwest Forestry University, Kunming 650224, P.R. China *Corresponding author’s e-mail: [email protected] Abstract A new wood-inhabiting fungal species, Trechispora yunnanensis sp. nov., is proposed based on morphological characteristics and molecular phylogenetic analyses. The species is characterized by resupinate basidiomata, rigid and fragile up on drying, cream to pale greyish hymenial surface; a monomitic hyphal system with generative hyphae bearing clamp connections, IKI- , CB-; ellipsoid, hyaline, thick-walled, ornamented, IKI-, CB- basidiospores measuring as 7–8.5 × 5–5.5 μm. The internal transcribed spacer (ITS) and the large subunit (LSU) regions of nuclear ribosomal RNA gene sequences of the studied samples were generated, and phylogenetic analyses were performed with maximum likelihood (ML), maximum parsimony (MP) and bayesian inference methods (BPP). The phylogenetic analyses based on molecular data of ITS+nLSU sequences showed that T. yunnanensis formed a monophyletic lineage with a strong support (100% ML, 100% MP, 1.00 BPP) and was closely related to T. byssinella and T. laevis. -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
A Checklist of the Aphyllophoroid Fungi (Basidiomycota) Recorded from the Brazilian Atlantic Forest
Posted date: September 2009 Summary published in MYCOTAXON 109: 439–442 A checklist of the aphyllophoroid fungi (Basidiomycota) recorded from the Brazilian Atlantic Forest JULIANO MARCON BALTAZAR & TATIANA BAPTISTA GIBERTONI [email protected], [email protected] Universidade Federal de Pernambuco, Departamento de Micologia Av. Nelson Chaves s/n, CEP 50670-420, Recife, Pernambuco, Brazil Abstract — The Atlantic Forest is one of the most diverse and threatened biomes of the world. A list with 733 species of aphyllophoroid fungi reported from the Brazilian Altantic Forest is presented based on an intensive search of literature records. These species are distributed in 219 genera and 47 families. Polyporaceae is the most highly represented family with 153 species; Phellinus is the genus with the highest number of species (42). Key words — Aphyllophorales, macrofungi, neotropics Introduction The Atlantic Forest is a unique series of South American rainforest ecosystems, which also includes other distinct vegetation types, such as mangroves and ‘restinga’ (Mittermeier et al. 2005). This biome is located along the Atlantic coast of Brazil and inland into parts of Argentine and Paraguay. It once covered an area of approximately 1,300,000 km2 (Pôrto et al. 2006), and it was present in 17 of the 27 states of Brazil. This rainforest is one of the most diverse regions and one of the most threatened environments of the world, since its area is now home to 67% of the Brazilian population and it is currently reduced to 7.26% of its original size, placing it among the five most important hotspots (Mittermeier 2005, SOS Mata Atlântica/INPE 2008). -
An Overview of Aphyllophorales (Wood Rotting Fungi) from India
Int.J.Curr.Microbiol.App.Sci (2013) 2(12): 112-139 ISSN: 2319-7706 Volume 2 Number 12 (2013) pp. 112-139 http://www.ijcmas.com Review Article An overview of Aphyllophorales (wood rotting fungi) from India Kiran Ramchandra Ranadive* Waghire College, Saswad, Tal-Purandar, Dist. Pune, Maharashtra (India) *Corresponding author A B S T R A C T K e y w o r d s During field and literature surveys, a rich mycobiota was observed in the vegetation of India. The heavy rainfall and high humidity favours the growth of Fungi; Aphyllophoraceous fungi. The present work materially adds to our knowledge of Aphyllophorales; Poroid and Non-Poroid Aphyllophorales from all over India. A total of more than Basidiomycetes; 190 genera of 52 families and total 1175 species of from poroid and non-poroid semi-evergreen Aphyllophorales fungi were reported from Indian literature till 2012.The checklist gives the total count of aphyllophoraceous fungal diversity from India which is also forest.. a valued addition for comparing aphyllophoraceous diversity in the world. Introduction Aphyllophorales order was proposed by in culture are recognized by Stalper. Rea, after Patouillard, for Basidiomycetes (Stalper,1978). having macroscopic basidiocarps in which the hymenophore is flattened Much of the literature of the order is based (Thelephoraceae), club-like on the traditional family groupings and as (Clavariaceae), tooth-like (Hydnaceae) or under the current re-arrangements, one has the hymenium lining tubes family may exhibit several different types (Polyporaceae) or some times on lamellae, of hymenophore (e.g. Gomphaceae has the poroid or lamellate hymenophores effuse, clavarioid, hydnoid and being tough and not fleshy as in the cantharelloid hymenophores). -
Genera of Corticioid Fungi: Keys, Nomenclature and Taxonomy Article
Studies in Fungi 5(1): 125–309 (2020) www.studiesinfungi.org ISSN 2465-4973 Article Doi 10.5943/sif/5/1/12 Genera of corticioid fungi: keys, nomenclature and taxonomy Gorjón SP BIOCONS – Department of Botany and Plant Physiology, University of Salamanca, 37007 Salamanca, Spain Gorjón SP 2020 – Genera of corticioid fungi: keys, nomenclature, and taxonomy. Studies in Fungi 5(1), 125–309, Doi 10.5943/sif/5/1/12 Abstract A review of the worldwide corticioid homobasidiomycetes genera is presented. A total of 620 genera are considered with comments on their taxonomy and nomenclature. Of them, about 420 are accepted and keyed out, described in detail with remarks on their taxonomy and systematics. Key words – Corticiaceae – Crust fungi – Diversity – Homobasidiomycetes Introduction Corticioid fungi are a diverse and heterogeneous group of fungi mainly referred to basidiomycete fungi in which basidiomes are generally resupinate. Basidiome construction is often simple, and in most cases, only generative hyphae are found. In more structured basidiomes, those with a reflexed margin or with a pileate surface, more or less sclerified hyphae are usually found. Even the basidiome structure is apparently not very complex, hymenophore configuration should be highly variable finding smooth surfaces or different variations to increase the spore production area such as rugose, tuberculate, aculeate, merulioid, folded, or poroid hymenial surfaces. It is often thought that corticioid fungi produce unattractive and little variable forms and, in most cases, they go unnoticed by most mycologists as ungraceful forms that ‘cover sticks and look like a paint stain’. Although the macroscopic variability compared to other fungi is, but not always, usually limited, under the microscope they surprise with a great diversity of forms of basidia, cystidia, spores and other microscopic elements (Hjortstam et al. -
Of Himachal Pradesh I.B
Journal on New Biological Reports 2(2): 71-98 (2013) ISSN 2319 – 1104 (Online) A Checklist of Wood Rotting Fungi (non-gilled Agaricomycotina) of Himachal Pradesh I.B. Prasher* & Deepali Ashok Department of Botany, Punjab University, Chandigarh-1600014, India (Received on: 17 April, 2013; accepted on: 11 May, 2013) ABSTRACT Three hundred fifty five species of wood rotting fungi (non-gilled Agaricomycotina) are being recorded from state of Himachal Pradesh. These belong to 37 families spreading over 133 genera. These are recorded from 8 districts (Chamba, Kangra, Kinnaur, Kullu, Shimla, Solan, Bilaspur, and Mandi) of the study area. District Bilaspur and Mandi of Himachal Pradesh have been surveyed for the first time. Key Words: Wood rotting fungi, Agaricomycotina (non- gilled), Himachal Pradesh, North Western Himalayas. INTRODUCTION Wood rotting basidiomycetes include both gilled 2010, 2010a, 2010b, 2010c), Prasher et.al. (2011, and non-gilled fungi. The non-gilled 2012), etc. agaricomycotina includes members belonging to Polyporaceae and those belonging to Corticiaceae. MATERIALS AND METHODS These fungi degrade the wood chiefly by acting on cellulose and lignin through their enzyme system The data provided in this communication is based and have been classified as white rot or brown rot on the examination of the collections made by us as causing fungi. White rot fungi degrade lignin and well as collected by the previous workers and cellulose both, leaving white residue and brown rot deposited in the Herbarium of Botany Department, fungi which degrade only cellulose. White rot Panjab University, Chandigarh (PAN), India. The fungi account for 94% of the total known observations are based on the fresh as well as dry basidiomycetous fungi where as only 6% are brown specimens and those preserved in Formaldehyde, rot fungi (Gilbertson, 1980). -
Checklist of the Aphyllophoraceous Fungi (Agaricomycetes) of the Brazilian Amazonia
Posted date: June 2009 Summary published in MYCOTAXON 108: 319–322 Checklist of the aphyllophoraceous fungi (Agaricomycetes) of the Brazilian Amazonia ALLYNE CHRISTINA GOMES-SILVA1 & TATIANA BAPTISTA GIBERTONI1 [email protected] [email protected] Universidade Federal de Pernambuco, Departamento de Micologia Av. Nelson Chaves s/n, CEP 50760-420, Recife, PE, Brazil Abstract — A literature-based checklist of the aphyllophoraceous fungi reported from the Brazilian Amazonia was compiled. Two hundred and sixteen species, 90 genera, 22 families, and 9 orders (Agaricales, Auriculariales, Cantharellales, Corticiales, Gloeophyllales, Hymenochaetales, Polyporales, Russulales and Trechisporales) have been reported from the area. Key words — macrofungi, neotropics Introduction The aphyllophoraceous fungi are currently spread througout many orders of Agaricomycetes (Hibbett et al. 2007) and comprise species that function as major decomposers of plant organic matter (Alexopoulos et al. 1996). The Amazonian Forest (00°44'–06°24'S / 58°05'–68°01'W) covers an area of 7 × 106 km2 in nine South American countries. Around 63% of the forest is located in nine Brazilian States (Acre, Amazonas, Amapá, Pará, Rondônia, Roraima, Tocantins, west of Maranhão, and north of Mato Grosso) (Fig. 1). The Amazonian forest consists of a mosaic of different habitats, such as open ombrophilous, stational semi-decidual, mountain, “terra firme,” “várzea” and “igapó” forests, and “campinaranas” (Amazonian savannahs). Six months of dry season and six month of rainy season can be observed (Museu Paraense Emílio Goeldi 2007). Even with the high biodiversity of Amazonia and the well-documented importance of aphyllophoraceous fungi to all arboreous ecosystems, few studies have been undertaken in the Brazilian Amazonia on this group of fungi (Bononi 1981, 1992, Capelari & Maziero 1988, Gomes-Silva et al. -
Comparative Genomics of Early-Diverging Mushroom-Forming
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities Laszl oG.Nagy,* ,1 Robert Riley,2 Andrew Tritt,2 Catherine Adam,2 Chris Daum,2 Dimitrios Floudas,3 Hui Sun,2 Jagjit S. Yadav,4 Jasmyn Pangilinan,2 Karl-Henrik Larsson,5 Kenji Matsuura,6 Kerrie Barry,2 2 2 2,7 4 8 Kurt Labutti, Rita Kuo, Robin A. Ohm, Sukanta S. Bhattacharya, Takashi Shirouzu, Downloaded from https://academic.oup.com/mbe/article-abstract/33/4/959/2579459 by University of California, Berkeley user on 30 October 2019 Yuko Yoshinaga,2 Francis M. Martin,9 Igor V. Grigoriev,2 and David S. Hibbett*,10 1Synthetic and Systems Biology Unit, Institute of Biochemistry, BRC-HAS, Szeged, Hungary 2US Department of Energy (DOE) Joint Genome Institute, Walnut Creek, CA 3Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden 4Department of Environmental Health, University of Cincinnati College of Medicine 5Museum of Natural History, University of Oslo, Blindern, Oslo, Norway 6Laboratory of Insect Ecology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan 7Department of Microbiology, Utrecht University, Utrecht, The Netherlands 8National Museum of Nature and Science, Tsukuba, Ibaraki, Japan 9Institut National De La Recherche Agronomique, Unite Mixte De Recherche 1136 UniversiteHenriPoincar e, Interactions Arbres/Micro-Organismes, Champenoux, France 10Biology Department, Clark University, Worcester, MA *Corresponding author: E-mail: [email protected]; [email protected]. Associate editor: Takashi Gojobori Abstract Evolution of lignocellulose decomposition was one of the most ecologically important innovations in fungi. White-rot fungi in the Agaricomycetes (mushrooms and relatives) are the most effective microorganisms in degrading both cellulose and lignin components of woody plant cell walls (PCW). -
East Devon Pebblebed Heaths Providing Space for Nature Biodiversity Audit 2016 Space for Nature Report: East Devon Pebblebed Heaths
East Devon Pebblebed Heaths East Devon Pebblebed Providing Space for East Devon Nature Pebblebed Heaths Providing Space for Nature Dr. Samuel G. M. Bridgewater and Lesley M. Kerry Biodiversity Audit 2016 Site of Special Scientific Interest Special Area of Conservation Special Protection Area Biodiversity Audit 2016 Space for Nature Report: East Devon Pebblebed Heaths Contents Introduction by 22nd Baron Clinton . 4 Methodology . 23 Designations . 24 Acknowledgements . 6 European Legislation and European Protected Species and Habitats. 25 Summary . 7 Species of Principal Importance and Introduction . 11 Biodiversity Action Plan Priority Species . 25 Geology . 13 Birds of Conservation Concern . 26 Biodiversity studies . 13 Endangered, Nationally Notable and Nationally Scarce Species . 26 Vegetation . 13 The Nature of Devon: A Biodiversity Birds . 13 and Geodiversity Action Plan . 26 Mammals . 14 Reptiles . 14 Results and Discussion . 27 Butterflies. 14 Species diversity . 28 Odonata . 14 Heathland versus non-heathland specialists . 30 Other Invertebrates . 15 Conservation Designations . 31 Conservation Status . 15 Ecosystem Services . 31 Ownership of ‘the Commons’ and management . 16 Future Priorities . 32 Cultural Significance . 16 Vegetation and Plant Life . 33 Recreation . 16 Existing Condition of the SSSI . 35 Military training . 17 Brief characterisation of the vegetation Archaeology . 17 communities . 37 Threats . 18 The flora of the Pebblebed Heaths . 38 Military and recreational pressure . 18 Plants of conservation significance . 38 Climate Change . 18 Invasive Plants . 41 Acid and nitrogen deposition. 18 Funding and Management Change . 19 Appendix 1. List of Vascular Plant Species . 42 Management . 19 Appendix 2. List of Ferns, Horsetails and Clubmosses . 58 Scrub Clearance . 20 Grazing . 20 Appendix 3. List of Bryophytes . 58 Mowing and Flailing .