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Porpomyces Submucidus (Hydnodontaceae, Basidiomycota), a New Species from Tropical China Based on Morphological and Molecular Evidence
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/283034971 Porpomyces submucidus (Hydnodontaceae, Basidiomycota), a new species from tropical China based on morphological and molecular evidence Article in Phytotaxa · October 2015 DOI: 10.11646/phytotaxa.230.1.5 CITATIONS READS 2 186 2 authors, including: Fang Wu Beijing Forestry University 73 PUBLICATIONS 838 CITATIONS SEE PROFILE All content following this page was uploaded by Fang Wu on 30 May 2018. The user has requested enhancement of the downloaded file. Phytotaxa 230 (1): 061–068 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.230.1.5 Porpomyces submucidus (Hydnodontaceae, Basidiomycota), a new species from tropical China based on morphological and molecular evidence FANG WU*, YUAN YUAN & CHANG-LIN ZHAO 1Institute of Microbiology, PO Box 61, Beijing Forestry University, Beijing 100083, China * Corresponding authors’ e-mails: [email protected] (FW) Abstract A new species is described from tropical China as Porpomyces submucidus on the basis of both morphological characters and molecular evidence. Phylogenetic analyse based on the ITS sequence, LSU sequence and the ITS+LSU sequence show that the new species belongs to Porpomyces and forms a distict clade as a sister group of Porpomyces mucidus. The fungus is characterized by thin, white to cream, resupinate basidiome with cottony to rhizomorphic margin, small pores (7–9 per mm), a monomitic hyphal structure with clamped generative hyphae, usually ampullated at most septa, and small, hyaline, thin-walled, ellipsoid basidiospores measuring 2.2–2.8 × 1.2–1.8 μm. -
Fungal Community Structural and Functional Responses to Disturbances in a North Temperate Forest
Fungal Community Structural and Functional Responses to Disturbances in a North Temperate Forest By Buck Tanner Castillo A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Ecology and Evolutionary Biology) in The University of Michigan 2020 Doctoral Committee: Professor Timothy Y. James, Co-Chair Professor Knute J. Nadelhoffer, Co-Chair Associate Professor Vincent Denef Professor Donald R. Zak Buck T. Castillo [email protected] ORCID ID: 0000-0002-5426-3821 ©Buck T. Castillo 2020 Dedication To my mother: Melinda Kathryn Fry For always instilling in me a sense of wonder and curiosity. For all the adventures down dirt roads and imaginations of centuries past. For all your love, Thank you. ii Acknowledgements Many people have guided, encouraged and inspired me throughout this process. I am eternally grateful for this network of support. First, I must thank my advisors, Knute and Tim for all of the excellent advice, unfaltering confidence, and high expectations they continually provided and set for me. My committee members, Don Zak and Vincent Denef, have been fantastic sources of insight, inspiration, and encouragement. Thank you all so much for your time, knowledge, and most of all for always making me believe in myself. A special thanks to two incredible researchers that were always great mentors who became even better friends: Luke Nave and Jim Le Moine. Jim Le Moine has taught me so much about being a critical thinker and was always more than generous with his time, insight, and advice. Thank you, Jim, for midnight walks through bugcamp and full bowls of delicious popping corn. -
Comparative and Population Genomics Landscape of Phellinus Noxius
bioRxiv preprint doi: https://doi.org/10.1101/132712; this version posted September 17, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Comparative and population genomics landscape of Phellinus noxius: 2 a hypervariable fungus causing root rot in trees 3 4 Chia-Lin Chung¶1,2, Tracy J. Lee3,4,5, Mitsuteru Akiba6, Hsin-Han Lee1, Tzu-Hao 5 Kuo3, Dang Liu3,7, Huei-Mien Ke3, Toshiro Yokoi6, Marylette B Roa3,8, Meiyeh J Lu3, 6 Ya-Yun Chang1, Pao-Jen Ann9, Jyh-Nong Tsai9, Chien-Yu Chen10, Shean-Shong 7 Tzean1, Yuko Ota6,11, Tsutomu Hattori6, Norio Sahashi6, Ruey-Fen Liou1,2, Taisei 8 Kikuchi12 and Isheng J Tsai¶3,4,5,7 9 10 1Department of Plant Pathology and Microbiology, National Taiwan University, Taiwan 11 2Master Program for Plant Medicine, National Taiwan University, Taiwan 12 3Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 13 4Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and 14 National Taiwan Normal University 15 5Department of Life Science, National Taiwan Normal University 16 6Department of Forest Microbiology, Forestry and Forest Products Research Institute, 17 Tsukuba, Japan 18 7Genome and Systems Biology Degree Program, National Taiwan University and Academia 19 Sinica, Taipei, Taiwan 20 8Philippine Genome Center, University of the Philippines, Diliman, Quezon City, Philippines 21 1101 -
Fungal Diversity in the Mediterranean Area
Fungal Diversity in the Mediterranean Area • Giuseppe Venturella Fungal Diversity in the Mediterranean Area Edited by Giuseppe Venturella Printed Edition of the Special Issue Published in Diversity www.mdpi.com/journal/diversity Fungal Diversity in the Mediterranean Area Fungal Diversity in the Mediterranean Area Editor Giuseppe Venturella MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editor Giuseppe Venturella University of Palermo Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Diversity (ISSN 1424-2818) (available at: https://www.mdpi.com/journal/diversity/special issues/ fungal diversity). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03936-978-2 (Hbk) ISBN 978-3-03936-979-9 (PDF) c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Editor .............................................. vii Giuseppe Venturella Fungal Diversity in the Mediterranean Area Reprinted from: Diversity 2020, 12, 253, doi:10.3390/d12060253 .................... 1 Elias Polemis, Vassiliki Fryssouli, Vassileios Daskalopoulos and Georgios I. -
A Preliminary Checklist of Arizona Macrofungi
A PRELIMINARY CHECKLIST OF ARIZONA MACROFUNGI Scott T. Bates School of Life Sciences Arizona State University PO Box 874601 Tempe, AZ 85287-4601 ABSTRACT A checklist of 1290 species of nonlichenized ascomycetaceous, basidiomycetaceous, and zygomycetaceous macrofungi is presented for the state of Arizona. The checklist was compiled from records of Arizona fungi in scientific publications or herbarium databases. Additional records were obtained from a physical search of herbarium specimens in the University of Arizona’s Robert L. Gilbertson Mycological Herbarium and of the author’s personal herbarium. This publication represents the first comprehensive checklist of macrofungi for Arizona. In all probability, the checklist is far from complete as new species await discovery and some of the species listed are in need of taxonomic revision. The data presented here serve as a baseline for future studies related to fungal biodiversity in Arizona and can contribute to state or national inventories of biota. INTRODUCTION Arizona is a state noted for the diversity of its biotic communities (Brown 1994). Boreal forests found at high altitudes, the ‘Sky Islands’ prevalent in the southern parts of the state, and ponderosa pine (Pinus ponderosa P.& C. Lawson) forests that are widespread in Arizona, all provide rich habitats that sustain numerous species of macrofungi. Even xeric biomes, such as desertscrub and semidesert- grasslands, support a unique mycota, which include rare species such as Itajahya galericulata A. Møller (Long & Stouffer 1943b, Fig. 2c). Although checklists for some groups of fungi present in the state have been published previously (e.g., Gilbertson & Budington 1970, Gilbertson et al. 1974, Gilbertson & Bigelow 1998, Fogel & States 2002), this checklist represents the first comprehensive listing of all macrofungi in the kingdom Eumycota (Fungi) that are known from Arizona. -
Bibliotheksliste-Aarau-Dezember 2016
Bibliotheksverzeichnis VSVP + Nur im Leesesaal verfügbar, * Dissert. Signatur Autor Titel Jahrgang AKB Myc 1 Ricken Vademecum für Pilzfreunde. 2. Auflage 1920 2 Gramberg Pilze der Heimat 2 Bände 1921 3 Michael Führer für Pilzfreunde, Ausgabe B, 3 Bände 1917 3 b Michael / Schulz Führer für Pilzfreunde. 3 Bände 1927 3 Michael Führer für Pilzfreunde. 3 Bände 1918-1919 4 Dumée Nouvel atlas de poche des champignons. 2 Bände 1921 5 Maublanc Les champignons comestibles et vénéneux. 2 Bände 1926-1927 6 Negri Atlante dei principali funghi comestibili e velenosi 1908 7 Jacottet Les champignons dans la nature 1925 8 Hahn Der Pilzsammler 1903 9 Rolland Atlas des champignons de France, Suisse et Belgique 1910 10 Crawshay The spore ornamentation of the Russulas 1930 11 Cooke Handbook of British fungi. Vol. 1,2. 1871 12/ 1,1 Winter Die Pilze Deutschlands, Oesterreichs und der Schweiz.1. 1884 12/ 1,5 Fischer, E. Die Pilze Deutschlands, Oesterreichs und der Schweiz. Abt. 5 1897 13 Migula Kryptogamenflora von Deutschland, Oesterreich und der Schweiz 1913 14 Secretan Mycographie suisse. 3 vol. 1833 15 Bourdot / Galzin Hymenomycètes de France (doppelt) 1927 16 Bigeard / Guillemin Flore des champignons supérieurs de France. 2 Bände. 1913 17 Wuensche Die Pilze. Anleitung zur Kenntnis derselben 1877 18 Lenz Die nützlichen und schädlichen Schwämme 1840 19 Constantin / Dufour Nouvelle flore des champignons de France 1921 20 Ricken Die Blätterpilze Deutschlands und der angr. Länder. 2 Bände 1915 21 Constantin / Dufour Petite flore des champignons comestibles et vénéneux 1895 22 Quélet Les champignons du Jura et des Vosges. P.1-3+Suppl. -
Re-Thinking the Classification of Corticioid Fungi
mycological research 111 (2007) 1040–1063 journal homepage: www.elsevier.com/locate/mycres Re-thinking the classification of corticioid fungi Karl-Henrik LARSSON Go¨teborg University, Department of Plant and Environmental Sciences, Box 461, SE 405 30 Go¨teborg, Sweden article info abstract Article history: Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or Received 30 November 2005 hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single Received in revised form family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi 29 June 2007 are distributed among all major clades within Agaricomycetes. There is a relative consensus Accepted 7 August 2007 concerning the higher order classification of basidiomycetes down to order. This paper Published online 16 August 2007 presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative Corresponding Editor: families were identified from published phylogenies and preliminary analyses of unpub- Scott LaGreca lished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phy- logenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly Keywords: supported and three unsupported clades were identified. These clades are treated as fam- Agaricomycetes ilies in a Linnean hierarchical classification and each family is briefly described. Three ad- Basidiomycota ditional families not covered by the phylogenetic analyses are also included in the Molecular systematics classification. All accepted corticioid genera are either referred to one of the families or Phylogeny listed as incertae sedis. Taxonomy ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Introduction develop a downward-facing basidioma. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
New Data on Aphyllophoroid Fungi (Basidiomycota) in Forest-Steppe Introduction Communities of the Lipetsk Region, European Russia
Acta Mycologica DOI: 10.5586/am.1112 ORIGINAL RESEARCH PAPER Publication history Received: 2018-06-05 Accepted: 2018-09-30 New data on aphyllophoroid fungi Published: 2018-12-28 (Basidiomycota) in forest-steppe Handling editor Anna Kujawa, Institute for Agricultural and Forest communities of the Lipetsk region, Environment, Polish Academy of Sciences, Poland European Russia Authors’ contributions SV designed the research, 1 2 1 collected and identifed the Sergey Volobuev *, Alexandra Arzhenenko , Sergey Bolshakov , material; AA collected and Nataliya Shakhova3, Lyudmila Sarycheva4 identifed the material; SB 1 Laboratory of Systematics and Geography of Fungi, Komarov Botanical Institute, Russian identifed the material; NS and Academy of Sciences, Professor Popov Str. 2, St. Petersburg 197376, Russia LS collected the material; all 2 Botany Chair, Biological Department, Saint Petersburg State University, Universitetskaya authors contributed to the Embankment 7–9 Str., Petersburg 199034, Russia manuscript preparation 3 Laboratory of Biochemistry of Fungi, Komarov Botanical Institute, Russian Academy of Sciences, Professor Popov Str. 2, St. Petersburg 197376, Russia Funding 4 Laboratory of Mycology, Galichya Gora Nature Reserve, Voronezh State University, Donskoye The work was supported by the village, Zadonsky District, Lipetsk region 399240, Russia program of basic research of the Russian Academy of Sciences, * Corresponding author. Email: [email protected] project “Biological diversity and dynamics of the fora and vegetation of Russia”, using equipment of the Core Facility Abstract Center of the Komarov Botanical Te data on 150 species of aphyllophoroid fungi from the Lipetsk region, Central Institute “Cell and Molecular Russian Upland, European Russia, are presented. Te annotated species list based Technologies in Plant Science”. -
Trechispora Yunnanensis Sp. Nov. (Hydnodontaceae, Basidiomycota) from China
Phytotaxa 424 (4): 253–261 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2019 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.424.4.5 Trechispora yunnanensis sp. nov. (Hydnodontaceae, Basidiomycota) from China TAI-MIN XU2, YU-HUI CHEN2 & CHANG-LIN ZHAO1,3* 1Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming 650224, P.R. China 2College of Life Sciences, Southwest Forestry University, Kunming 650224, P.R. China 3College of Biodiversity Conservation, Southwest Forestry University, Kunming 650224, P.R. China *Corresponding author’s e-mail: [email protected] Abstract A new wood-inhabiting fungal species, Trechispora yunnanensis sp. nov., is proposed based on morphological characteristics and molecular phylogenetic analyses. The species is characterized by resupinate basidiomata, rigid and fragile up on drying, cream to pale greyish hymenial surface; a monomitic hyphal system with generative hyphae bearing clamp connections, IKI- , CB-; ellipsoid, hyaline, thick-walled, ornamented, IKI-, CB- basidiospores measuring as 7–8.5 × 5–5.5 μm. The internal transcribed spacer (ITS) and the large subunit (LSU) regions of nuclear ribosomal RNA gene sequences of the studied samples were generated, and phylogenetic analyses were performed with maximum likelihood (ML), maximum parsimony (MP) and bayesian inference methods (BPP). The phylogenetic analyses based on molecular data of ITS+nLSU sequences showed that T. yunnanensis formed a monophyletic lineage with a strong support (100% ML, 100% MP, 1.00 BPP) and was closely related to T. byssinella and T. laevis. -
(Basidiomycetes) in Taiwan
The Corticiaceae (Basidiomycetes) in Taiwan Dissertation zur Erlangung des Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) im Fachbereich 18 Naturwissenschaften am Institut für Biologie der Universität Kassel vorgelegt von I-Shu Lee aus Taiwan 2010 Tag der Mündlichen Prüfung: Kassel, am 26. Mai 2010 1. Berichterstatter: Prof. Dr. Ewald Langer 2. Berichterstatter: PD Dr. Roland Kirschner 3. Berichterstatter: Prof. Dr. Kurt Weising 4. Berichterstatter: Prof. Dr. Friedrich Schmidt Acknowledgement i Acknowledgement It was Prof. Dr. Chee-Jen Chen who introduced me to fungal field, and sent me to Germany for learning further knowledge. I am greatly indebted to Prof. Dr. Ewald Langer, the leader of Ecology department in Biology institute, Kassel University. He taught me the principles and fundamentals of mycology, and has concentrated my attention towards the Corticiaceae in Taiwan. I own them both much thankfulness for their support and teaching during all these years. I also want to express my sincere thanks to Dr. Clovis Douanla-Meli, who has willing to guide me on fungi determination. Moreover, thanks to Torsten Bernauer, who with Dr. C. Douanla-Meli together helped me correct this thesis. We have discussed several collections and text descriptions. My special thanks go to all members of Ecology department. Carola Weißkopf, Inge Aufenanger, and Ulrike Frieling taught me the skills of fungal cultures and related molecular technology. I am also grateful to be the partner with them in this department. Collections came available for study thanks to the kind help of Prof. Dr. C. J. Chen, Prof. Dr. E. Langer, and Dr. Gitta Langer. I render my thanks to Dr. -
Lycoperdon Pers
UNIVERSIDADE FEDERAL DO RIO GRANDE DO NORTE CENTRO DE BIOCIÊNCIAS PROGRAMA DE PÓS-GRADUAÇÃO EM SISTEMÁTICA E EVOLUÇÃO REVISÃO DO GÊNERO LYCOPERDON PERS. (LYCOPERDACEAE, AGARICALES) MEDIANTE ANÁLISES MORFOLÓGICAS E MOLECULARES DÔNIS DA SILVA ALFREDO ________________________________________________ Tese de Doutorado Natal/RN, março de 2017 DÔNIS DA SILVA ALFREDO REVISÃO DO GÊNERO LYCOPERDON PERS. (LYCOPERDACEAE, AGARICALES) MEDIANTE ANÁLISES MORFOLÓGICAS E MOLECULARES Tese de doutorado apresentada ao Programa de Pós-Graduação em Sistemática e Evolução da Universidade Federal do Rio Grande do Norte, em cumprimento às exigências para a obtenção do título de Doutor em Sistemática e Evolução Área de concentração: taxonomia e sistemática Orientador: Dr. Iuri Goulart Baseia Coorientadora: Dra. María Paz Martín Coorientador: Dr. Paulo Marinho NATAL – RN 2017 0 Universidade Federal do Rio Grande do Norte - UFRN Sistema de Bibliotecas - SISBI Catalogação de Publicação na Fonte. UFRN - Biblioteca Setorial Prof. Leopoldo Nelson - •Centro de Biociências - CB Alfredo, Dônis da Silva. Revisão do gênero Lycoperdon Pers. (Lycoperdaceae, Agaricales) mediante análises morfológicas e moleculares / Dônis da Silva Alfredo. - Natal, 2017. 298 f.: il. Tese (Doutorado) - Universidade Federal do Rio Grande do Norte. Centro de Biociências. Programa de Pós-Graduação em Sistemática e Evolução. Orientador: Dr. Iuri Goulart Baseia. Coorientadora: Dra. María Paz Martín. Coorientador: Dr. Paulo Marinho. 1. Basidiomycota - Tese. 2. Fungos gasteroides - Tese. 3. ITS barcode