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Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
Introduction to Common Native & Invasive Freshwater Plants in Alaska
Introduction to Common Native & Potential Invasive Freshwater Plants in Alaska Cover photographs by (top to bottom, left to right): Tara Chestnut/Hannah E. Anderson, Jamie Fenneman, Vanessa Morgan, Dana Visalli, Jamie Fenneman, Lynda K. Moore and Denny Lassuy. Introduction to Common Native & Potential Invasive Freshwater Plants in Alaska This document is based on An Aquatic Plant Identification Manual for Washington’s Freshwater Plants, which was modified with permission from the Washington State Department of Ecology, by the Center for Lakes and Reservoirs at Portland State University for Alaska Department of Fish and Game US Fish & Wildlife Service - Coastal Program US Fish & Wildlife Service - Aquatic Invasive Species Program December 2009 TABLE OF CONTENTS TABLE OF CONTENTS Acknowledgments ............................................................................ x Introduction Overview ............................................................................. xvi How to Use This Manual .................................................... xvi Categories of Special Interest Imperiled, Rare and Uncommon Aquatic Species ..................... xx Indigenous Peoples Use of Aquatic Plants .............................. xxi Invasive Aquatic Plants Impacts ................................................................................. xxi Vectors ................................................................................. xxii Prevention Tips .................................................... xxii Early Detection and Reporting -
UNIVERSITY of CALIFORNIA SANTA CRUZ Refining Species
UNIVERSITY OF CALIFORNIA SANTA CRUZ Refining species distribution models for coevolving plant and insects using species interactions and phylogeography A thesis submitted in partial satisfaction of the requirements for the degree of MASTER OF ARTS in ECOLOGY AND EVOLUTIONARY BIOLOGY by Christopher Schwind December 2016 The Thesis of Christopher Schwind is approved: Professor John N. Thompson Professor Kristy Kroeker Professor Erika Zavaleta ________________________________ Tyrus Miller Vice Provost and Dean of Graduate Studies Table of Contents Abstract........................................................................................................................iv Acknowledgements......................................................................................................v Introduction..................................................................................................................1 Methods........................................................................................................................5 Results..........................................................................................................................12 Discussion....................................................................................................................21 Supplemental Information...........................................................................................28 References....................................................................................................................30 -
Aquatic Vascular Plant Species Distribution Maps
Appendix 11.5.1: Aquatic Vascular Plant Species Distribution Maps These distribution maps are for 116 aquatic vascular macrophyte species (Table 1). Aquatic designation follows habitat descriptions in Haines and Vining (1998), and includes submergent, floating and some emergent species. See Appendix 11.4 for list of species. Also included in Appendix 11.4 is the number of HUC-10 watersheds from which each taxon has been recorded, and the county-level distributions. Data are from nine sources, as compiled in the MABP database (plus a few additional records derived from ancilliary information contained in reports from two fisheries surveys in the Upper St. John basin organized by The Nature Conservancy). With the exception of the University of Maine herbarium records, most locations represent point samples (coordinates were provided in data sources or derived by MABP from site descriptions in data sources). The herbarium data are identified only to township. In the species distribution maps, town-level records are indicated by center-points (centroids). Figure 1 on this page shows as polygons the towns where taxon records are identified only at the town level. Data Sources: MABP ID MABP DataSet Name Provider 7 Rare taxa from MNAP lake plant surveys D. Cameron, MNAP 8 Lake plant surveys D. Cameron, MNAP 35 Acadia National Park plant survey C. Greene et al. 63 Lake plant surveys A. Dieffenbacher-Krall 71 Natural Heritage Database (rare plants) MNAP 91 University of Maine herbarium database C. Campbell 183 Natural Heritage Database (delisted species) MNAP 194 Rapid bioassessment surveys D. Cameron, MNAP 207 Invasive aquatic plant records MDEP Maps are in alphabetical order by species name. -
<I>Soyauxia</I> (Peridiscaceae, Formerly Medusandraceae)
Plant Ecology and Evolution 148 (3): 409–419, 2015 http://dx.doi.org/10.5091/plecevo.2015.1040 REGULAR PAPER A synopsis of Soyauxia (Peridiscaceae, formerly Medusandraceae) with a new species from Liberia Frans J. Breteler1,*, Freek T. Bakker2 & Carel C.H. Jongkind3 1Grintweg 303, NL-6704 AR Wageningen, The Netherlands (previously Herbarium Vadense, Wageningen) 2Biosystematics Group, Wageningen University, P.O. Box 647, NL-6700 AP, Wageningen, The Netherlands 3Botanic Garden Meise, Nieuwelaan 38, BE-1860 Meise, Belgium *Author for correspondence: [email protected] Background – Botanical exploration of the Sapo National Park in Liberia resulted in the discovery of a new species, which, after DNA investigation, was identified as belonging to Soyauxia of the small family Peridiscaceae. Methods – Normal practices of herbarium taxonomy and DNA sequence analysis have been applied. All the relevant herbarium material has been studied, mainly at BR, K, P, and WAG. The presented phylogenetic relationships of the new Soyauxia species is based on rbcL gene sequence comparison, inferred by a RAxML analysis including 100 replicates fast bootstrapping. The distribution maps have been produced using Map Maker Pro. Relevant collection data are stored in the NHN (Nationaal Herbarium Nederland) database. Key results − The new species Soyauxia kwewonii and an imperfectly known species are treated in the framework of a synopsis with the six other species of the genus. rbcL sequence comparison followed by RAxML analyses yielded a well-supported match of S. kwewonii with the Soyauxia clade. Its conservation status according to the IUCN red list criteria is assessed as Endangered. Its distribution as well as the distribution areas of the genus and of the remaining species are mapped. -
CDLT Mountain Home & USFS-Boundry Butte Plant List
CDLT Mountain Home Preserve- Boundary Butte Plant list CDLT Mountain Home & USFS-Boundry Butte Plant list Type Scientific Name Common Name Fern Pteridium aquilinum bracken fern Forb Achillea millefolium common yarrow Forb Agoseris heterophylla annual agoseris Forb Anemone oregana Oregon anemone Forb Antennaria racemosa raceme pussytoes Forb Boechera pauciflorus rockcress (Formerly Arabis) Forb Arnica cordifolia heart-leaf arnica Forb Balsamorhiza sagittata arrowleaf balsamroot Forb Brickellia oblongifolia Mojave brickellbush Forb Cacaliopsis nardosmia silvercrown (Formerly Luina) Forb Calochortus lyallii Lyall's mariposa lily Forb Camassia quamash common camas Forb Castilleja miniata scarlet Indian paintbrush Forb Claytonia lanceolata springbeauty Forb Collinsia parviflora small-flowered blue-eyed mary Forb Commandra umbellata bastard toadflax Forb Delphinium viridescens Wenatchee larkspur Forb Erythronium grandiflorum glacier lily Forb Erysimum species wallflower Forb Fragaria virginiana Virginia strawberry Forb Fritillaria affinis checker lily, chocolate lily Forb Fritillaria pudica yellow bells Forb Galium sp. bedstraw Forb Heuchera cylindrica roundleaf alumroot Forb Hydrophyllum capitatum ballhead waterleaf Forb Lathyrus pauciflorus few-flowered pea Forb Lithophragma parviflorum small-flowered woodland-star Forb Lithophragma glabrum bulbous woodland-star Forb Lithophragma tenellum slender woodland-star Forb Lomatium nudicaule barestem biscuitroot Forb Lomatium triternatum nineleaf biscuitroot Forb Lonicera ciliosa orange honeysuckle -
Resolution of Deep Angiosperm Phylogeny Using Conserved Nuclear Genes and Estimates of Early Divergence Times
ARTICLE Received 24 Mar 2014 | Accepted 11 Aug 2014 | Published 24 Sep 2014 DOI: 10.1038/ncomms5956 OPEN Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times Liping Zeng1, Qiang Zhang2, Renran Sun1, Hongzhi Kong3, Ning Zhang1,4 & Hong Ma1,5 Angiosperms are the most successful plants and support human livelihood and ecosystems. Angiosperm phylogeny is the foundation of studies of gene function and phenotypic evolution, divergence time estimation and biogeography. The relationship of the five divergent groups of the Mesangiospermae (B99.95% of extant angiosperms) remains uncertain, with multiple hypotheses reported in the literature. Here transcriptome data sets are obtained from 26 species lacking sequenced genomes, representing each of the five groups: eudicots, monocots, magnoliids, Chloranthaceae and Ceratophyllaceae. Phylogenetic analyses using 59 carefully selected low-copy nuclear genes resulted in highly supported relationships: sisterhood of eudicots and a clade containing Chloranthaceae and Ceratophyllaceae, with magnoliids being the next sister group, followed by monocots. Our topology allows a re-examination of the evolutionary patterns of 110 morphological characters. The molecular clock estimates of Mesangiospermae diversification during the late to middle Jurassic correspond well to the origins of some insects, which may have been a factor facilitating early angiosperm radiation. 1 State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, Ministry of Education Key Laboratoryof Biodiversity Sciences and Ecological Engineering, Institute of Plant Biology, Institute of Biodiversity Science, Center for Evolutionary Biology, School of Life Sciences, Fudan University, 220 Handan Road, Yangpu District, Shanghai 200433, China. 2 Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and the Chinese Academy of Sciences, Guilin 541006, China. -
Evolutionary History of Floral Key Innovations in Angiosperms Elisabeth Reyes
Evolutionary history of floral key innovations in angiosperms Elisabeth Reyes To cite this version: Elisabeth Reyes. Evolutionary history of floral key innovations in angiosperms. Botanics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS489. tel-01443353 HAL Id: tel-01443353 https://tel.archives-ouvertes.fr/tel-01443353 Submitted on 23 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS489 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de Doctorat : Biologie Par Mme Elisabeth Reyes Evolutionary history of floral key innovations in angiosperms Thèse présentée et soutenue à Orsay, le 13 décembre 2016 : Composition du Jury : M. Ronse de Craene, Louis Directeur de recherche aux Jardins Rapporteur Botaniques Royaux d’Édimbourg M. Forest, Félix Directeur de recherche aux Jardins Rapporteur Botaniques Royaux de Kew Mme. Damerval, Catherine Directrice de recherche au Moulon Président du jury M. Lowry, Porter Curateur en chef aux Jardins Examinateur Botaniques du Missouri M. Haevermans, Thomas Maître de conférences au MNHN Examinateur Mme. Nadot, Sophie Professeur à l’Université Paris-Sud Directeur de thèse M. -
South American Cacti in Time and Space: Studies on the Diversification of the Tribe Cereeae, with Particular Focus on Subtribe Trichocereinae (Cactaceae)
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2013 South American Cacti in time and space: studies on the diversification of the tribe Cereeae, with particular focus on subtribe Trichocereinae (Cactaceae) Lendel, Anita Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-93287 Dissertation Published Version Originally published at: Lendel, Anita. South American Cacti in time and space: studies on the diversification of the tribe Cereeae, with particular focus on subtribe Trichocereinae (Cactaceae). 2013, University of Zurich, Faculty of Science. South American Cacti in Time and Space: Studies on the Diversification of the Tribe Cereeae, with Particular Focus on Subtribe Trichocereinae (Cactaceae) _________________________________________________________________________________ Dissertation zur Erlangung der naturwissenschaftlichen Doktorwürde (Dr.sc.nat.) vorgelegt der Mathematisch-naturwissenschaftlichen Fakultät der Universität Zürich von Anita Lendel aus Kroatien Promotionskomitee: Prof. Dr. H. Peter Linder (Vorsitz) PD. Dr. Reto Nyffeler Prof. Dr. Elena Conti Zürich, 2013 Table of Contents Acknowledgments 1 Introduction 3 Chapter 1. Phylogenetics and taxonomy of the tribe Cereeae s.l., with particular focus 15 on the subtribe Trichocereinae (Cactaceae – Cactoideae) Chapter 2. Floral evolution in the South American tribe Cereeae s.l. (Cactaceae: 53 Cactoideae): Pollination syndromes in a comparative phylogenetic context Chapter 3. Contemporaneous and recent radiations of the world’s major succulent 86 plant lineages Chapter 4. Tackling the molecular dating paradox: underestimated pitfalls and best 121 strategies when fossils are scarce Outlook and Future Research 207 Curriculum Vitae 209 Summary 211 Zusammenfassung 213 Acknowledgments I really believe that no one can go through the process of doing a PhD and come out without being changed at a very profound level. -
First Phylogeny of Bitterbush Family, Picramniaceae (Picramniales)
plants Article First Phylogeny of Bitterbush Family, Picramniaceae (Picramniales) Alexey Shipunov 1,*, Shyla Carr 1, Spencer Furniss 1, Kyle Pay 1 and José Rubens Pirani 2 1 Minot State University, Minot, ND 58707, USA; [email protected] (S.C.); [email protected] (S.F.); [email protected] (K.P.) 2 University of São Paulo, São Paulo 01000-000, Brazil; [email protected] * Correspondence: [email protected] Received: 17 December 2019; Accepted: 19 February 2020; Published: 21 February 2020 Abstract: Picramniaceae is the only member of Picramniales which is sister to the clade (Sapindales (Huerteales (Malvales, Brassicales))) in the rosidsmalvids. Not much is known about most aspects of their ecology, geography, and morphology. The family is restricted to American tropics. Picramniaceae representatives are rich in secondary metabolites; some species are known to be important for pharmaceutical purposes. Traditionally, Picramniaceae was classified as a subfamily of Simaroubaceae, but from 1995 on, it has been segregated containing two genera, Picramnia and Alvaradoa, with the recent addition of a third genus, Nothotalisia, described in 2011. Only a few species of the family have been the subject of DNA-related research, and fewer than half of the species have been included in morphological phylogenetic analyses. It is clear that Picramniaceae remains a largely under-researched plant group. Here we present the first molecular phylogenetic tree of the group, based on both chloroplast and nuclear markers, widely adopted in the plant DNA barcoding. The main findings are: The family and its genera are monophyletic and Picramnia is sister to two other genera; some clades corroborate previous assumptions of relationships made on a morphological or geographical basis, while most parts of the molecular topology suggest high levels of homoplasy in the morphological evolution of Picramnia. -
Epiphyte Diversity and Biomass Loads of Canopy Emergent Trees in Chilean Temperate Rain Forests: a Neglected Functional Component
Forest Ecology and Management 259 (2010) 1490–1501 Contents lists available at ScienceDirect Forest Ecology and Management journal homepage: www.elsevier.com/locate/foreco Epiphyte diversity and biomass loads of canopy emergent trees in Chilean temperate rain forests: A neglected functional component Iva´nA.Dı´az a,b,c,*, Kathryn E. Sieving b, Maurice E. Pen˜a-Foxon c, Juan Larraı´n d, Juan J. Armesto c,e a Instituto de Silvicultura, Facultad de Ciencias Forestales y Recursos Naturales, Universidad Austral de Chile, P.O. Box 567, Valdivia, Chile b Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL USA c Institute of Ecology and Biodiversity IEB, Las Palmeras 3425, N˜un˜oa, Santiago, Chile d Departamento de Bota´nica, Universidad de Concepcio´n, Concepcio´n, Chile e Center for Advanced Studies in Ecology and Biodiversity, Departamento de Ecologı´a, Pontificia Universidad Cato´lica de Chile, Santiago, Chile ARTICLE INFO ABSTRACT Article history: We document for the first time the epiphytic composition and biomass of canopy emergent trees from Received 11 August 2009 temperate, old-growth coastal rainforests of Chile (428300S). Through tree-climbing techniques, we Received in revised form 13 January 2010 accessed the crown of two large (c. 1 m trunk diameter, 25–30 m tall) individuals of Eucryphia cordifolia Accepted 14 January 2010 (Cunoniaceae) and one large Aextoxicon punctatum (Aextoxicaceae) to sample all epiphytes from the base to the treetop. Epiphytes, with the exception of the hemi-epiphytic tree Raukaua laetevirens (Araliaceae), Keywords: were removed, weighed and subsamples dried to estimate total dry mass. We recorded 22 species of Epiphytes vascular epiphytes, and 22 genera of cryptogams, with at least 30 species of bryophytes, liverworts and Emergent canopy trees lichens.