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History and Philosophy of Systematic Biology
History and Philosophy of Systematic Biology Bock, W. J. (1973) Philosophical foundations of classical evolutionary classification Systematic Zoology 22: 375-392 Part of a general symposium on "Contemporary Systematic Philosophies," there are some other interesting papers here. Brower, A. V. Z. (2000) Evolution Is Not a Necessary Assumption of Cladistics Cladistics 16: 143- 154 Dayrat, Benoit (2005) Ancestor-descendant relationships and the reconstruction of the Tree of Lif Paleobiology 31: 347-353 Donoghue, M.J. and J.W. Kadereit (1992) Walter Zimmermann and the growth of phylogenetic theory Systematic Biology 41: 74-84 Faith, D. P. and J. W. H. Trueman (2001) Towards an inclusive philosophy for phylogenetic inference Systematic Biology 50: 331-350 Gaffney, E. S. (1979) An introduction to the logic of phylogeny reconstruction, pp. 79-111 in Cracraft, J. and N. Eldredge (eds.) Phylogenetic Analysis and Paleontology Columbia University Press, New York. Gilmour, J. S. L. (1940) Taxonomy and philosophy, pp. 461-474 in J. Huxley (ed.) The New Systematics Oxford Hull, D. L. (1978) A matter of individuality Phil. of Science 45: 335-360 Hull, D. L. (1978) The principles of biological classification: the use and abuse of philosophy Hull, D. L. (1984) Cladistic theory: hypotheses that blur and grow, pp. 5-23 in T. Duncan and T. F. Stuessy (eds.) Cladistics: Perspectives on the Reconstruction of Evolutionary History Columbia University Press, New York * Hull, D. L. (1988) Science as a process: an evolutionary account of the social and conceptual development of science University of Chicago Press. An already classic work on the recent, violent history of systematics; used as data for Hull's general theories about scientific change. -
RI Equisetopsida and Lycopodiopsida.Indd
IIntroductionntroduction byby FFrancisrancis UnderwoodUnderwood Rhode Island Equisetopsida, Lycopodiopsida and Isoetopsida Special Th anks to the following for giving permission for the use their images. Robbin Moran New York Botanical Garden George Yatskievych and Ann Larson Missouri Botanical Garden Jan De Laet, plantsystematics.org Th is pdf is a companion publication to Rhode Island Equisetopsida, Lycopodiopsida & Isoetopsida at among-ri-wildfl owers.org Th e Elfi n Press 2016 Introduction Formerly known as fern allies, Horsetails, Club-mosses, Fir-mosses, Spike-mosses and Quillworts are plants that have an alternate generation life-cycle similar to ferns, having both sporophyte and gametophyte stages. Equisetopsida Horsetails date from the Devonian period (416 to 359 million years ago) in earth’s history where they were trees up to 110 feet in height and helped to form the coal deposits of the Carboniferous period. Only one genus has survived to modern times (Equisetum). Horsetails Horsetails (Equisetum) have jointed stems with whorls of thin narrow leaves. In the sporophyte stage, they have a sterile and fertile form. Th ey produce only one type of spore. While the gametophytes produced from the spores appear to be plentiful, the successful reproduction of the sporophyte form is low with most Horsetails reproducing vegetatively. Lycopodiopsida Lycopodiopsida includes the clubmosses (Dendrolycopodium, Diphasiastrum, Lycopodiella, Lycopodium , Spinulum) and Fir-mosses (Huperzia) Clubmosses Clubmosses are evergreen plants that produce only microspores that develop into a gametophyte capable of producing both sperm and egg cells. Club-mosses can produce the spores either in leaf axils or at the top of their stems. Th e spore capsules form in a cone-like structures (strobili) at the top of the plants. -
Introduction to Botany. Lecture 29
Kingdom Vegetabilia: plants Introduction to Botany. Lecture 29 Alexey Shipunov Minot State University November 12th, 2010 Shipunov BIOL 154.29 Kingdom Vegetabilia: plants Outline 1 Kingdom Vegetabilia: plants Bryophyta: mosses Pteridophyta: ferns and allies Shipunov BIOL 154.29 Bryophyta: mosses Kingdom Vegetabilia: plants Pteridophyta: ferns and allies Life cycle of mosses (picture from the board) Shipunov BIOL 154.29 Bryophyta: mosses Kingdom Vegetabilia: plants Pteridophyta: ferns and allies Three main groups (subphyla) Hepaticae—liverworts. Three classes, most primitive are Haplomitriopsida. Body has dorsal and ventral parts, sporogon bag-like, without columella, spores with elaters. Bryophytina—true mosses. Six classes, most important are Sphagnopsida (peat mosses), Polytrichopsida (haircap mosses) and Bryopsida. Body radial, sporogon long, with columella, spores without elaters. Anthocerotophytina—hornworts. One class. Body flattened, sporogon long, green, with columella and stomata, spores with elaters. Shipunov BIOL 154.29 Bryophyta: mosses Kingdom Vegetabilia: plants Pteridophyta: ferns and allies Haplomitrium gibbsiae, primitive liverwort Shipunov BIOL 154.29 Bryophyta: mosses Kingdom Vegetabilia: plants Pteridophyta: ferns and allies Elaters of liverworts (Lepidozia sp.) Shipunov BIOL 154.29 Bryophyta: mosses Kingdom Vegetabilia: plants Pteridophyta: ferns and allies Sphagnum sp. (Bryophyta, Sphagnopsida) with sporogons Shipunov BIOL 154.29 Bryophyta: mosses Kingdom Vegetabilia: plants Pteridophyta: ferns and allies Dawsonia -
Embryophytic Sporophytes in the Rhynie and Windyfield Cherts
Transactions of the Royal Society of Edinburgh: Earth Sciences http://journals.cambridge.org/TRE Additional services for Transactions of the Royal Society of Edinburgh: Earth Sciences: Email alerts: Click here Subscriptions: Click here Commercial reprints: Click here Terms of use : Click here Embryophytic sporophytes in the Rhynie and Windyeld cherts Dianne Edwards Transactions of the Royal Society of Edinburgh: Earth Sciences / Volume 94 / Issue 04 / December 2003, pp 397 - 410 DOI: 10.1017/S0263593300000778, Published online: 26 July 2007 Link to this article: http://journals.cambridge.org/abstract_S0263593300000778 How to cite this article: Dianne Edwards (2003). Embryophytic sporophytes in the Rhynie and Windyeld cherts. Transactions of the Royal Society of Edinburgh: Earth Sciences, 94, pp 397-410 doi:10.1017/S0263593300000778 Request Permissions : Click here Downloaded from http://journals.cambridge.org/TRE, IP address: 131.251.254.13 on 25 Feb 2014 Transactions of the Royal Society of Edinburgh: Earth Sciences, 94, 397–410, 2004 (for 2003) Embryophytic sporophytes in the Rhynie and Windyfield cherts Dianne Edwards ABSTRACT: Brief descriptions and comments on relationships are given for the seven embryo- phytic sporophytes in the cherts at Rhynie, Aberdeenshire, Scotland. They are Rhynia gwynne- vaughanii Kidston & Lang, Aglaophyton major D. S. Edwards, Horneophyton lignieri Barghoorn & Darrah, Asteroxylon mackiei Kidston & Lang, Nothia aphylla Lyon ex Høeg, Trichopherophyton teuchansii Lyon & Edwards and Ventarura lyonii Powell, Edwards & Trewin. The superb preserva- tion of the silica permineralisations produced in the hot spring environment provides remarkable insights into the anatomy of early land plants which are not available from compression fossils and other modes of permineralisation. -
Additional Observations on Zosterophyllum Yunnanicum Hsü from the Lower Devonian of Yunnan, China
This is an Open Access document downloaded from ORCA, Cardiff University's institutional repository: http://orca.cf.ac.uk/77818/ This is the author’s version of a work that was submitted to / accepted for publication. Citation for final published version: Edwards, Dianne, Yang, Nan, Hueber, Francis M. and Li, Cheng-Sen 2015. Additional observations on Zosterophyllum yunnanicum Hsü from the Lower Devonian of Yunnan, China. Review of Palaeobotany and Palynology 221 , pp. 220-229. 10.1016/j.revpalbo.2015.03.007 file Publishers page: http://dx.doi.org/10.1016/j.revpalbo.2015.03.007 <http://dx.doi.org/10.1016/j.revpalbo.2015.03.007> Please note: Changes made as a result of publishing processes such as copy-editing, formatting and page numbers may not be reflected in this version. For the definitive version of this publication, please refer to the published source. You are advised to consult the publisher’s version if you wish to cite this paper. This version is being made available in accordance with publisher policies. See http://orca.cf.ac.uk/policies.html for usage policies. Copyright and moral rights for publications made available in ORCA are retained by the copyright holders. @’ Additional observations on Zosterophyllum yunnanicum Hsü from the Lower Devonian of Yunnan, China Dianne Edwardsa, Nan Yangb, Francis M. Hueberc, Cheng-Sen Lib a*School of Earth and Ocean Sciences, Cardiff University, Park Place, Cardiff CF10 3AT, UK b Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China cNational Museum of Natural History, Smithsonian Institution, Washington D.C. 20560-0121, USA * Corresponding author, Tel.: +44 29208742564, Fax.: +44 2920874326 E-mail address: [email protected] ABSTRACT Investigation of unfigured specimens in the original collection of Zosterophyllum yunnanicum Hsü 1966 from the Lower Devonian (upper Pragian to basal Emsian) Xujiachong Formation, Qujing District, Yunnan, China has provided further data on both sporangial and stem anatomy. -
This Article Appeared in a Journal Published by Elsevier. the Attached Copy Is Furnished to the Author for Internal Non-Commerci
This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/authorsrights Author's personal copy International Journal of Paleopathology 4 (2014) 1–16 Contents lists available at ScienceDirect International Journal of Paleopathology jo urnal homepage: www.elsevier.com/locate/ijpp Invited Commentary Plant paleopathology and the roles of pathogens and insects a,b,c,d,∗ b,1 Conrad C. Labandeira , Rose Prevec a Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA b Department of Geology, Rhodes University, P.O. Box 94, Grahamstown 6140, South Africa c College of Life Sciences, Capital Normal University, Beijing, 100048, China d Department of Entomology and BEES Program, University of Maryland, College Park, MD 29742, USA a r t i c l e i n f o a b s t r a c t Article history: Plant pathologies are the consequence of physical and chemical responses by plants to invasive microor- Received 1 June 2013 ganisms or to imbalances in nutritional or environmental conditions. -
JUDD W.S. Et. Al. (2002) Plant Systematics: a Phylogenetic Approach. Chapter 7. an Overview of Green
UNCORRECTED PAGE PROOFS An Overview of Green Plant Phylogeny he word plant is commonly used to refer to any auto- trophic eukaryotic organism capable of converting light energy into chemical energy via the process of photosynthe- sis. More specifically, these organisms produce carbohydrates from carbon dioxide and water in the presence of chlorophyll inside of organelles called chloroplasts. Sometimes the term plant is extended to include autotrophic prokaryotic forms, especially the (eu)bacterial lineage known as the cyanobacteria (or blue- green algae). Many traditional botany textbooks even include the fungi, which differ dramatically in being heterotrophic eukaryotic organisms that enzymatically break down living or dead organic material and then absorb the simpler products. Fungi appear to be more closely related to animals, another lineage of heterotrophs characterized by eating other organisms and digesting them inter- nally. In this chapter we first briefly discuss the origin and evolution of several separately evolved plant lineages, both to acquaint you with these important branches of the tree of life and to help put the green plant lineage in broad phylogenetic perspective. We then focus attention on the evolution of green plants, emphasizing sev- eral critical transitions. Specifically, we concentrate on the origins of land plants (embryophytes), of vascular plants (tracheophytes), of 1 UNCORRECTED PAGE PROOFS 2 CHAPTER SEVEN seed plants (spermatophytes), and of flowering plants dons.” In some cases it is possible to abandon such (angiosperms). names entirely, but in others it is tempting to retain Although knowledge of fossil plants is critical to a them, either as common names for certain forms of orga- deep understanding of each of these shifts and some key nization (e.g., the “bryophytic” life cycle), or to refer to a fossils are mentioned, much of our discussion focuses on clade (e.g., applying “gymnosperms” to a hypothesized extant groups. -
Introduction to Botany. Lecture 35
Questions and answers Spermatophyta, seed plants Introduction to Botany. Lecture 35 Alexey Shipunov Minot State University November 28, 2011 Shipunov BIOL 154.35 Questions and answers Spermatophyta, seed plants Outline 1 Questions and answers 2 Spermatophyta, seed plants Classes of seed plants Conifers Gnetophytes Shipunov BIOL 154.35 Questions and answers Spermatophyta, seed plants Outline 1 Questions and answers 2 Spermatophyta, seed plants Classes of seed plants Conifers Gnetophytes Shipunov BIOL 154.35 Leaves-emergencies Leaves of lycopods Questions and answers Spermatophyta, seed plants Previous final question: the answer What are microphylls? Shipunov BIOL 154.35 Questions and answers Spermatophyta, seed plants Previous final question: the answer What are microphylls? Leaves-emergencies Leaves of lycopods Shipunov BIOL 154.35 Questions and answers Spermatophyta, seed plants Pteridophyta classes 1 2 3 4 5 6 7 8 9 10 Lycopodiopsida 1 0 0 1 0 0 1 1 0 0 Equisetopsida 0 1 0 1 0 1 0 1 0 1 Psilotopsida 0 1 1 0 0 0 0 0 0 1 Ophioglossopsida 0 1 0 0 0 0 1 0 0 0 Marattiopsida 0 1 1 0 0 1 0 1 1 0 Pteridopsida 1 1 0 0 1 1 0 1 1 0 1 Big (> 1,000 species); 2 Megaphyllous; 3 Synangia; 4 Strobilus; 5 Leptosporangia; 6 Terrestrial gametophyte; 7 Biflagellate sperm; 8 Roots; 9 Fronds; 10 Reduced leaves (enatia and scales). Characters are not necessary relevant to all members of class. Shipunov BIOL 154.35 Classes of seed plants Questions and answers Conifers Spermatophyta, seed plants Gnetophytes Spermatophyta, seed plants Classes of seed plants Shipunov BIOL 154.35 Classes of seed plants Questions and answers Conifers Spermatophyta, seed plants Gnetophytes Spermatophyta: seed plants ≈ 600 species of non-angiosperms and ≈ 250; 000 species of angiosperms Sporic life cycle with sporophyte predominance and seed Gametophyte is reduced to cells inside ovule or inside pollen grain. -
The Taxonomic Position of the Psilotales in the Light of Our Knowledge of Devonian Plant Life*
THE TAXONOMIC POSITION OF THE PSILOTALES IN THE LIGHT OF OUR KNOWLEDGE OF DEVONIAN PLANT LIFE* F. P. JONKER Laboratory of Palaeobotany and Palynology, Utrecht, The Netherlands ABSTRACT exclusively Devonian Psilophytales and of the latter the Rhyniaceae are regarded The order Psilotales, containing the two recent genera Psilatum and Tnzesiptel'is only, is usually usually as the closest relatives. Among classified by taxonomists and palaeo botanists those who take this st?nd I mention G. M. in the phylum Psiiophyta. This concept is, Smith (1955), Magdefra.u in Strasburger in spite of the synangia, based on the primitive (1971) and Lcmoigne (1968c). The concept general appearance reminding one of that of the of the last mentioned author will be dis• Devonian Rhyniaceae. Numerous attempts have been made to derive both genera, including their cussed further on. Darrah (1960) states synangia, from either the Rhvniaceae or from other that the status of the putative primitive Psilophyta. These attempts' sometimes led to the nature of the plant body in the Psilotaceae acceptance of a series of missing Jinks but this concept is, however, not supported bv palaeo· is controversial although there is a strong botanical data. tendency to accept the family as a pel'sis• In the opinion of the present reporter the order tent remnant of the Psilopsida. Andrews has kept a primitive general appearance of its (1961) states that Psilatum has been reaarded Devonian ancestors but in its synangia and in its monolete spores it is more advanced. by some botanists as a very simpl~ land In its anatomy, its microphyllous leaves, and in its plant, possibly a very ancient type that gametophyte perhaps, it shows more affiinity to the has managed to survive for several hundreds phylum Lycopodiophyta. -
Curitiba, Southern Brazil
data Data Descriptor Herbarium of the Pontifical Catholic University of Paraná (HUCP), Curitiba, Southern Brazil Rodrigo A. Kersten 1,*, João A. M. Salesbram 2 and Luiz A. Acra 3 1 Pontifical Catholic University of Paraná, School of Life Sciences, Curitiba 80.215-901, Brazil 2 REFLORA Project, Curitiba, Brazil; [email protected] 3 Pontifical Catholic University of Paraná, School of Life Sciences, Curitiba 80.215-901, Brazil; [email protected] * Correspondence: [email protected]; Tel.: +55-41-3721-2392 Academic Editor: Martin M. Gossner Received: 22 November 2016; Accepted: 5 February 2017; Published: 10 February 2017 Abstract: The main objective of this paper is to present the herbarium of the Pontifical Catholic University of Parana’s and its collection. The history of the HUCP had its beginning in the middle of the 1970s with the foundation of the Biology Museum that gathered both botanical and zoological specimens. In April 1979 collections were separated and the HUCP was founded with preserved specimens of algae (green, red, and brown), fungi, and embryophytes. As of October 2016, the collection encompasses nearly 25,000 specimens from 4934 species, 1609 genera, and 297 families. Most of the specimens comes from the state of Paraná but there were also specimens from many Brazilian states and other countries, mainly from South America (Chile, Argentina, Uruguay, Paraguay, and Colombia) but also from other parts of the world (Cuba, USA, Spain, Germany, China, and Australia). Our collection includes 42 fungi, 258 gymnosperms, 299 bryophytes, 2809 pteridophytes, 3158 algae, 17,832 angiosperms, and only one type of Mimosa (Mimosa tucumensis Barneby ex Ribas, M. -
Mississippi Natural Heritage Program Special Plants - Tracking List -2018
MISSISSIPPI NATURAL HERITAGE PROGRAM SPECIAL PLANTS - TRACKING LIST -2018- Approximately 3300 species of vascular plants (fern, gymnosperms, and angiosperms), and numerous non-vascular plants may be found in Mississippi. Many of these are quite common. Some, however, are known or suspected to occur in low numbers; these are designated as species of special concern, and are listed below. There are 495 special concern plants, which include 4 non- vascular plants, 28 ferns and fern allies, 4 gymnosperms, and 459 angiosperms 244 dicots and 215 monocots. An additional 100 species are designated “watch” status (see “Special Plants - Watch List”) with the potential of becoming species of special concern and include 2 fern and fern allies, 54 dicots and 44 monocots. This list is designated for the primary purposes of : 1) in environmental assessments, “flagging” of sensitive species that may be negatively affected by proposed actions; 2) determination of protection priorities of natural areas that contain such species; and 3) determination of priorities of inventory and protection for these plants, including the proposed listing of species for federal protection. GLOBAL STATE FEDERAL SPECIES NAME COMMON NAME RANK RANK STATUS BRYOPSIDA Callicladium haldanianum Callicladium Moss G5 SNR Leptobryum pyriforme Leptobryum Moss G5 SNR Rhodobryum roseum Rose Moss G5 S1? Trachyxiphium heteroicum Trachyxiphium Moss G2? S1? EQUISETOPSIDA Equisetum arvense Field Horsetail G5 S1S2 FILICOPSIDA Adiantum capillus-veneris Southern Maidenhair-fern G5 S2 Asplenium -
Conservation Assessment for Groundcedar and Stiff Clubmoss In
United States Department of Agriculture Conservation Assessment Forest Service for Groundcedar and Stiff Rocky Mountain Region Clubmoss in the Black Black Hills National Forest Hills National Forest South Custer, South Dakota Dakota and Wyoming March 2003 J.Hope Hornbeck, Deanna J. Reyher, Carolyn Sieg and Reed W. Crook Species Assessment of Groundcedar and Stiff Clubmoss in the Black Hills National Forest, South Dakota and Wyoming J. Hope Hornbeck, Deanna J. Reyher, Carolyn Hull Sieg and Reed W. Crook J. Hope Hornbeck is a Botanist with the Black Hills National Forest in Custer, South Dakota. She completed a B.S. in Environmental Biology at The University of Montana and a M.S. in Plant Biology at the University of Minnesota. Deanna J. Reyher is an Ecologist/Soil Scientist with the Black Hills National Forest in Custer, South Dakota. She completed a B.S. degree in Agronomy from the University of Nebraska. Carolyn Hull Sieg is a Research Plant Ecologist with the Rocky Mountain Research Station in Flagstaff, Arizona. She completed a B.S. in Wildlife Biology and M.S. in Range Science from Colorado State University and a Ph.D. in Range and Wildlife Management at Texas Tech University. Reed W. Crook is a Botanist with the Black Hills National Forest in Custer, South Dakota. He completed a B.S. in Botany at Brigham Young University, and a M.S. in Plant Morphology and Ph.D. in Plant Systematics at the University of Georgia. EXECUTIVE SUMMARY Stiff clubmoss (Lycopodium annotinum L.) and groundcedar (Lycopodium complanatum L.; synonym = Diphasiastrum complanatum [L.] Holub.) (Lycopodiaceae) are circumboreal clubmoss species that are widely distributed in North American boreal habitats.