The Taxonomic Position of the Psilotales in the Light of Our Knowledge of Devonian Plant Life*
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History and Philosophy of Systematic Biology
History and Philosophy of Systematic Biology Bock, W. J. (1973) Philosophical foundations of classical evolutionary classification Systematic Zoology 22: 375-392 Part of a general symposium on "Contemporary Systematic Philosophies," there are some other interesting papers here. Brower, A. V. Z. (2000) Evolution Is Not a Necessary Assumption of Cladistics Cladistics 16: 143- 154 Dayrat, Benoit (2005) Ancestor-descendant relationships and the reconstruction of the Tree of Lif Paleobiology 31: 347-353 Donoghue, M.J. and J.W. Kadereit (1992) Walter Zimmermann and the growth of phylogenetic theory Systematic Biology 41: 74-84 Faith, D. P. and J. W. H. Trueman (2001) Towards an inclusive philosophy for phylogenetic inference Systematic Biology 50: 331-350 Gaffney, E. S. (1979) An introduction to the logic of phylogeny reconstruction, pp. 79-111 in Cracraft, J. and N. Eldredge (eds.) Phylogenetic Analysis and Paleontology Columbia University Press, New York. Gilmour, J. S. L. (1940) Taxonomy and philosophy, pp. 461-474 in J. Huxley (ed.) The New Systematics Oxford Hull, D. L. (1978) A matter of individuality Phil. of Science 45: 335-360 Hull, D. L. (1978) The principles of biological classification: the use and abuse of philosophy Hull, D. L. (1984) Cladistic theory: hypotheses that blur and grow, pp. 5-23 in T. Duncan and T. F. Stuessy (eds.) Cladistics: Perspectives on the Reconstruction of Evolutionary History Columbia University Press, New York * Hull, D. L. (1988) Science as a process: an evolutionary account of the social and conceptual development of science University of Chicago Press. An already classic work on the recent, violent history of systematics; used as data for Hull's general theories about scientific change. -
1 Ophioglossidae (PDF, 873
Ophioglossidae 1 Polypodiopsida Ophioglossidae – Gabelblattgewächse (Polypodiopsida) Zu den Ophioglossidae werden 2 rezente Ordnungen gestellt, die Psilotales (Gabelfarne) und die Ophioglossales (Natternzungenartigen). Die Ophioglossidae sind eine sehr alte Landpflanzengruppe. Die Blätter sind, anders als dies für viele makrophylle Farnpflanzen typisch ist, zu Beginn nicht eingerollt. Ein gemeinsames Merkmal der Psilotales mit den Ophioglossales sind eusporangiate Sporangien, d. h. die Sporangienwand weist mehrere Zellschichten auf (Unterschied lepto- sporangiate Farne, hier einschichtig). Bei einigen Arten der Psilotales fehlt eine echte Wurzel. Alle Arten sind mykotroph (Ernährung mittels Pilzsymbiose im Boden, Mykorrhiza). 1. Ordnung: Psilotales (Gabelfarne) 1.1 Systematik und Verbreitung Die Ordnung der Psilotales enthält nur 1 Familie, die Psilotaceae mit nur 2 Gattungen und 17 Arten (Psilotum 2 und Tmesipteris 15 Arten). Die Familie ist überwiegend tropisch verbreitet. 1.2 Morphologie 1.2.1 Habitus Die Arten der Psilotales sind ausschließlich krautige Pflanzen mit einem kräftigen, unterirdischen Kriechspross (Rhizom), das zahlreiche Rhizoide ausbildet. Echte Wurzeln fehlen. Die vollständige Reduktion der Wurzel wird hier als sekundäres, abgeleitetes Merkmal angesehen. Wie der Gametophyt ist auch der Sporophyt mykotroph, was erst die morphologische Reduktion der Wurzel erlaubte. Die oberirdischen sparrig dichotom verzweigten Sprossachsen weisen eine (angedeutete) Siphonostele mit einem holzigen Mark auf. Die unterirdischen Rhizome haben hingegen eine Protostele. 1.2.2 Blatt Arten aus den Psilotales haben ausschließlich schraubig angeordnete Mikrophylle. Bei Psilotum sind nur die Sporophylle Gabelblätter (im Unterschied zu den sterilen © PD DR. VEIT M. DÖRKEN, Universität Konstanz, FB Biologie Ophioglossidae 2 Polypodiopsida Blättern). Die Photosynthese erfolgt daher hauptsächlich über die chlorophyllreichen Sprossachsen (Rutenstrauch-Prinzip). Abb. 1 & 2: Psilotum nudum, dichotom verzweigte Sprossachse (links); Querschnitt einer Sprossachse (rechts). -
Embryophytic Sporophytes in the Rhynie and Windyfield Cherts
Transactions of the Royal Society of Edinburgh: Earth Sciences http://journals.cambridge.org/TRE Additional services for Transactions of the Royal Society of Edinburgh: Earth Sciences: Email alerts: Click here Subscriptions: Click here Commercial reprints: Click here Terms of use : Click here Embryophytic sporophytes in the Rhynie and Windyeld cherts Dianne Edwards Transactions of the Royal Society of Edinburgh: Earth Sciences / Volume 94 / Issue 04 / December 2003, pp 397 - 410 DOI: 10.1017/S0263593300000778, Published online: 26 July 2007 Link to this article: http://journals.cambridge.org/abstract_S0263593300000778 How to cite this article: Dianne Edwards (2003). Embryophytic sporophytes in the Rhynie and Windyeld cherts. Transactions of the Royal Society of Edinburgh: Earth Sciences, 94, pp 397-410 doi:10.1017/S0263593300000778 Request Permissions : Click here Downloaded from http://journals.cambridge.org/TRE, IP address: 131.251.254.13 on 25 Feb 2014 Transactions of the Royal Society of Edinburgh: Earth Sciences, 94, 397–410, 2004 (for 2003) Embryophytic sporophytes in the Rhynie and Windyfield cherts Dianne Edwards ABSTRACT: Brief descriptions and comments on relationships are given for the seven embryo- phytic sporophytes in the cherts at Rhynie, Aberdeenshire, Scotland. They are Rhynia gwynne- vaughanii Kidston & Lang, Aglaophyton major D. S. Edwards, Horneophyton lignieri Barghoorn & Darrah, Asteroxylon mackiei Kidston & Lang, Nothia aphylla Lyon ex Høeg, Trichopherophyton teuchansii Lyon & Edwards and Ventarura lyonii Powell, Edwards & Trewin. The superb preserva- tion of the silica permineralisations produced in the hot spring environment provides remarkable insights into the anatomy of early land plants which are not available from compression fossils and other modes of permineralisation. -
Flora of South Australia 5Th Edition | Edited by Jürgen Kellermann
Flora of South Australia 5th Edition | Edited by Jürgen Kellermann KEY TO FAMILIES1 J.P. Jessop2 The sequence of families used in this Flora follows closely the one adopted by the Australian Plant Census (www.anbg.gov. au/chah/apc), which in turn is based on that of the Angiosperm Phylogeny Group (APG III 2009) and Mabberley’s Plant Book (Mabberley 2008). It differs from previous editions of the Flora, which were mainly based on the classification system of Engler & Gilg (1919). A list of all families recognised in this Flora is printed in the inside cover pages with families already published highlighted in bold. The up-take of this new system by the State Herbarium of South Australia is still in progress and the S.A. Census database (www.flora.sa.gov.au/census.shtml) still uses the old classification of families. The Australian Plant Census web-site presents comparison tables of the old and new systems on family and genus level. A good overview of all families can be found in Heywood et al. (2007) and Stevens (2001–), although these authors accept a slightly different family classification. A number of names with which people using this key may be familiar but are not employed in the system used in this work have been included for convenience and are enclosed on quotation marks. 1. Plants reproducing by spores and not producing flowers (“Ferns and lycopods”) 2. Aerial shoots either dichotomously branched, with scale leaves and 3-lobed sporophores or plants with fronds consisting of a simple or divided sterile blade and a simple or branched spikelike sporophore .................................................................................. -
Pterido Classes General Characters
1. Class: Psilotopsida: The members of the class Psilotopsida show close resemblance in fundamental characteristics to the Silurian and Devonian members of Rhyniopsida (e.g., Rhynia, Cooksonia), Zostero- phyllopsida (e.g., Zosterophyllum) and Trimero- phytopsida (e.g., Trimerophyton, Psilophyton). Psilotopsida includes only two living genera viz., Psilotum and Tmesipteris. Characteristic Features of Class Psilotopsida: 1. The plant body is a rootless sporophyte that differentiates into a subterranean rhizome and an aerial erect shoot. 2. Branching is dichotomous in both subterranean rhizome and aerial shoot. 3. The large rhizoids borne on the rhizome absorb water and nutrients from the soil. 4. On the aerial shoots, spirally arranged scale-like (e.g., Psilotum) or leaf-like appendages (e.g., Tmesipteris) are borne. 5. Stele is protostelic or siphonostelic with sclerenchymatous pith. 6. Secondary growth is absent. 7. Bi- or trilocular sporangia are borne in the axils of leaf-like appendages. 8. Mode of sporangial development is of eusporangiate type. 9. Spores are of equal sizes and shapes i.e., homosporous. 10. The gametophytes are non-green, cylindrical, branched and subterranean. They grow as saprophytes with an associated endophytic fungus. 11.Antherozoids are spirally coiled and multi- flagellated. 2. Class. Lycopsida: This class has a long evolutionary history and is represented both by extant and extinct genera. This group first originated during the Lower Devonian period of Palaeozoic Era (ca 390 my). This class is represented by five living genera — Lycopodium, Selaginella, Phylloglossum, Styhtes, and Isoetes, and fourteen extinct genera — Asteroxylon, Baragwanathia, Protolepido- dendron, Lepidodendron, Sigillaria etc. Salient Features of the Class Lycopsida: (a) The sporophyte plant body is differentiated into definite root, stem and leaves. -
Classification, Molecular Phylogeny, Divergence Time, And
The JapaneseSocietyJapanese Society for Plant Systematics ISSN 1346-7565 Acta Phytotax. Geobot. 56 (2): 111-126 (2005) Invited article and Classification,MolecularPhylogeny,DivergenceTime, Morphological Evolution of Pteridophytes with Notes on Heterospory and and Monophyletic ParaphyleticGroups MASAHIRO KATO* Department ofBiotogicat Sciences,Graduate Schoot ofScience,Universitv. of7bkyo, Hongo, 7bk)]o IJ3- O033, lapan Pteridophytes are free-sporing vascular land plants that evolutionarily link bryophytes and seed plants. Conventiona], group (taxon)-based hierarchic classifications ofptcridophytes using phenetic characters are briefiy reviewcd. Review is also made for recent trcc-based cladistic analyses and molecular phy- logenetic analyses with increasingly large data sets ofmultiplc genes (compared to single genes in pre- vious studies) and increasingly large numbers of spccies representing major groups of pteridophytes (compared to particular groups in previous studies), and it is cxtended to most recent analyses of esti- mating divergcnce times ofpteridephytes, These c]assifications, phylogenetics, and divergcncc time esti- mates have improved our understanding of the diversity and historical structure of pteridophytes. Heterospory is noted with referencc to its origins, endospory, fertilization, and dispersal. Finally, menophylctic and paraphyletic groups rccently proposed or re-recognized are briefly dcscribcd. Key words: classification, divergence timc estimate. fems,heterospory, molecular phylogcny, pteri- dophytcs. Morphological -
Psilotum Nudum Skeleton Fork-Fern
PLANT Psilotum nudum Skeleton Fork-fern AUS SA AMLR Endemism Life History Centre and are now held in captivity due to fears of rock destabilisation and habitat modification causing - E E - Perennial further decline (J. Quarmby pers. comm. 2009). A propagation program is being implemented and Family PSILOTACEAE plants will be reintroduced in the future (J. Quarmby pers. comm. 2009). There are no pre-1983 records.2 Habitat Occurs on seeping rock faces.4 At Mount Bold Reservoir plants occurred in crevice just above head height (near high water mark in winter), growing under an overhang of rock on vertical rock face.3 Type of rock substrate may be a limiting factor in distribution (T. Jury pers. comm.). Within the AMLR the preferred broad vegetation group is Riparian.2 Within the AMLR the species’ degree of habitat specialisation is classified as ‘Very High’.2 Biology and Ecology Primitive system of absorbing nutrients and water Photo: © Peter Lang through rhizomes is inefficient so the plant forms a relationship with a mycorrhizal fungus.5 Conservation Significance In SA, the distribution is confined within the AMLR, Aboriginal Significance disjunct from the remaining extant distribution in other Post-1983 records indicate the entire AMLR distribution States. Within the AMLR the species’ relative area of occurs in Peramangk Nation (bordering Kaurna occupancy is classified as ‘Extremely Restricted’. Nation). Relative to all AMLR extant species, the species' taxonomic uniqueness is classified as ‘Very High’.2 Threats Proposed increase in the storage capacity of Mount Description Bold Reservoir posed a significant threat (D. Duval pers. Low-growing fern devoid of any roots or true leaves. -
Horsetails and Ferns Are a Monophyletic Group and the Closest Living Relatives to Seed Plants
letters to nature joining trees and the amino-acid maximum parsimony phylogenies, and 100 replicates for ................................................................. the nucleotide maximum likelihood tree and the amino-acid distance-based analyses (Dayhoff PAM matrix) (see Supplementary Information for additional trees and summary Horsetails and ferns are a of bootstrap support). We performed tests of alternative phylogenetic hypotheses using Kishino±Hasegawa29 (parsimony and likelihood) and Templeton's non-parametric30 tests. monophyletic group and the Received 30 October; accepted 4 December 2000. closestlivingrelativestoseedplants 1. Eisenberg, J. F. The Mammalian Radiations (Chicago Univ. Press, Chicago, 1981). 2. Novacek, M. J. Mammalian phylogeny: shaking the tree. Nature 356, 121±125 (1992). 3. O'Brien, S. J. et al. The promise of comparative genomics in mammals. Science 286, 458±481 (1999). Kathleen M. Pryer*, Harald Schneider*, Alan R. Smith², 4. Springer, M. S. et al. Endemic African mammals shake the phylogenetic tree. Nature 388, 61±64 (1997). Raymond Cran®ll², Paul G. Wolf³, Jeffrey S. Hunt* & Sedonia D. Sipes³ 5. Stanhope, M. J. et al. Highly congruent molecular support for a diverse clade of endemic African mammals. Mol. Phylogenet. Evol. 9, 501±508 (1998). * Department of Botany, The Field Museum of Natural History, 6. McKenna, M. C. & Bell, S. K. Classi®cation of Mammals above the Species Level (Columbia Univ. Press, New York, 1997). 1400 S. Lake Shore Drive, Chicago, Illinois 60605, USA 7. Mouchatty, S. K., Gullberg, A., Janke, A. & Arnason, U. The phylogenetic position of the Talpidae ² University Herbarium, University of California, 1001 Valley Life Sciences within Eutheria based on analysis of complete mitochondrial sequences. Mol. -
An Alternative Model for the Earliest Evolution of Vascular Plants
1 1 An alternative model for the earliest evolution of vascular plants 2 3 BORJA CASCALES-MINANA, PHILIPPE STEEMANS, THOMAS SERVAIS, KEVIN LEPOT 4 AND PHILIPPE GERRIENNE 5 6 Land plants comprise the bryophytes and the polysporangiophytes. All extant polysporangiophytes are 7 vascular plants (tracheophytes), but to date, some basalmost polysporangiophytes (also called 8 protracheophytes) are considered non-vascular. Protracheophytes include the Horneophytopsida and 9 Aglaophyton/Teruelia. They are most generally considered phylogenetically intermediate between 10 bryophytes and vascular plants, and are therefore essential to elucidate the origins of current vascular 11 floras. Here, we propose an alternative evolutionary framework for the earliest tracheophytes. The 12 supporting evidence comes from the study of the Rhynie chert historical slides from the Natural History 13 Museum of Lille (France). From this, we emphasize that Horneophyton has a particular type of tracheid 14 characterized by narrow, irregular, annular and/or, possibly spiral wall thickenings of putative secondary 15 origin, and hence that it cannot be considered non-vascular anymore. Accordingly, our phylogenetic 16 analysis resolves Horneophyton and allies (i.e., Horneophytopsida) within tracheophytes, but as sister 17 to eutracheophytes (i.e., extant vascular plants). Together, horneophytes and eutracheophytes form a 18 new clade called herein supereutracheophytes. The thin, irregular, annular to helical thickenings of 19 Horneophyton clearly point to a sequential acquisition of the characters of water-conducting cells. 20 Because of their simple conducting cells and morphology, the horneophytophytes may be seen as the 21 precursors of all extant vascular plant biodiversity. 22 23 Keywords: Rhynie chert, Horneophyton, Tracheophyte, Lower Devonian, Cladistics. -
Fern Classification
16 Fern classification ALAN R. SMITH, KATHLEEN M. PRYER, ERIC SCHUETTPELZ, PETRA KORALL, HARALD SCHNEIDER, AND PAUL G. WOLF 16.1 Introduction and historical summary / Over the past 70 years, many fern classifications, nearly all based on morphology, most explicitly or implicitly phylogenetic, have been proposed. The most complete and commonly used classifications, some intended primar• ily as herbarium (filing) schemes, are summarized in Table 16.1, and include: Christensen (1938), Copeland (1947), Holttum (1947, 1949), Nayar (1970), Bierhorst (1971), Crabbe et al. (1975), Pichi Sermolli (1977), Ching (1978), Tryon and Tryon (1982), Kramer (in Kubitzki, 1990), Hennipman (1996), and Stevenson and Loconte (1996). Other classifications or trees implying relationships, some with a regional focus, include Bower (1926), Ching (1940), Dickason (1946), Wagner (1969), Tagawa and Iwatsuki (1972), Holttum (1973), and Mickel (1974). Tryon (1952) and Pichi Sermolli (1973) reviewed and reproduced many of these and still earlier classifica• tions, and Pichi Sermolli (1970, 1981, 1982, 1986) also summarized information on family names of ferns. Smith (1996) provided a summary and discussion of recent classifications. With the advent of cladistic methods and molecular sequencing techniques, there has been an increased interest in classifications reflecting evolutionary relationships. Phylogenetic studies robustly support a basal dichotomy within vascular plants, separating the lycophytes (less than 1 % of extant vascular plants) from the euphyllophytes (Figure 16.l; Raubeson and Jansen, 1992, Kenrick and Crane, 1997; Pryer et al., 2001a, 2004a, 2004b; Qiu et al., 2006). Living euphyl• lophytes, in turn, comprise two major clades: spermatophytes (seed plants), which are in excess of 260 000 species (Thorne, 2002; Scotland and Wortley, Biology and Evolution of Ferns and Lycopliytes, ed. -
M.Sc. BOTANY SEMESTER - I BO- 7115 PAPER - I DIVERSITY of VIRUSES, MYCOPLASMA, BACTERIA and FUNGI (60 Hrs)
ST. JOSEPH'S COLLEGE (AUTONOMOUS) M.Sc. BOTANY SEMESTER - I BO- 7115 PAPER - I DIVERSITY OF VIRUSES, MYCOPLASMA, BACTERIA AND FUNGI (60 Hrs) Unit I Five kingdom, Eight kingdom classification and Three domains of 02 hrs living organisms. Unit -II Viruses – general characters, nomenclature, classification; 08 hrs morphology, structure, transmission and replication. Purification of plant viruses. Symptoms of viral diseases in plants Mycoplasma – General characters , classification ,ultrastructure 05 hrs Unit-III and reproduction. Brief account of mycoplasmal diseases of plants- Little leaf of Brinjal. Unit -IV Bacteria –Forms, distribution and classification according to 12 hrs Bergy’s System, Classification based on DNA-DNA hybridization, 16s rRNA sequencing; Nutritional types: Autotrophic, heterotrophic, photosynthetic,chemosynthetic,saprophytic,parasitic and symbiotic ; A brief account on methonogenic bacteria ; Brief account of Actinomycetes and their importance in soil and medical microbiology. Unit – V Fungi 20 hrs General characteristics, Classification (Ainsworth 1973, McLaughlin 2001), structure and reproduction. Salient features of Myxomycota, Mastigomycotina, Zygomycotina, Ascomycotina, Basidiomycotina and Deuteromycotina and their classificafion upto class level. Unit - VI Brief account of fungal heterothallism, sex hormones and 09 hrs Parasexual cycle. Brief account of mycorrhizae,lichens, fungal symbionts in insects, fungi as biocontrol agents ( Trichoderma and nematophagous). Unit – VII Isolation, purification and culturing of microorganisms 04 hrs (bacteria and fungi). 1 PRACTICALS: Micrometry. Haemocytometer. Isolation, culture and staining techniques of Bacteria and Fungi. Type study: Stemonites, Synchytrium, Saprolegnia, Albugo, Phytophthora, Mucor/Rhizopus , Erysiphe, Aspergillus, Chaetomium, Pencillium, Morchella, Hamileia, Ustilago Lycoperdon, Cyathes, Dictyophora, Polyporus, Trichoderma, Curvularia, Alternaria, Drechslera and Pestalotia. Study of few bacterial, viral, mycoplasmal diseases in plants (based on availability). -
Devonian As a Time of Major Innovation in Plants and Their Communities
1 Back to the Beginnings: The Silurian- 2 Devonian as a Time of Major Innovation 15 3 in Plants and Their Communities 4 Patricia G. Gensel, Ian Glasspool, Robert A. Gastaldo, 5 Milan Libertin, and Jiří Kvaček 6 Abstract Silurian, with the Early Silurian Cooksonia barrandei 31 7 Massive changes in terrestrial paleoecology occurred dur- from central Europe representing the earliest vascular 32 8 ing the Devonian. This period saw the evolution of both plant known, to date. This plant had minute bifurcating 33 9 seed plants (e.g., Elkinsia and Moresnetia), fully lami- aerial axes terminating in expanded sporangia. Dispersed 34 10 nate∗ leaves and wood. Wood evolved independently in microfossils (spores and phytodebris) in continental and 35AU2 11 different plant groups during the Middle Devonian (arbo- coastal marine sediments provide the earliest evidence for 36 12 rescent lycopsids, cladoxylopsids, and progymnosperms) land plants, which are first reported from the Early 37 13 resulting in the evolution of the tree habit at this time Ordovician. 38 14 (Givetian, Gilboa forest, USA) and of various growth and 15 architectural configurations. By the end of the Devonian, 16 30-m-tall trees were distributed worldwide. Prior to the 17 appearance of a tree canopy habit, other early plant groups 15.1 Introduction 39 18 (trimerophytes) that colonized the planet’s landscapes 19 were of smaller stature attaining heights of a few meters Patricia G. Gensel and Milan Libertin 40 20 with a dense, three-dimensional array of thin lateral 21 branches functioning as “leaves”. Laminate leaves, as we We are now approaching the end of our journey to vegetated 41 AU3 22 now know them today, appeared, independently, at differ- landscapes that certainly are unfamiliar even to paleontolo- 42 23 ent times in the Devonian.