Two New Families of the Pezizales: Karstenellaceae and Pseudor Hizinaceae
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Pezizales, Pyronemataceae), Is Described from Australia Pamela S
Swainsona 31: 17–26 (2017) © 2017 Board of the Botanic Gardens & State Herbarium (Adelaide, South Australia) A new species of small black disc fungi, Smardaea australis (Pezizales, Pyronemataceae), is described from Australia Pamela S. Catcheside a,b, Samra Qaraghuli b & David E.A. Catcheside b a State Herbarium of South Australia, GPO Box 1047, Adelaide, South Australia 5001 Email: [email protected] b School of Biological Sciences, Flinders University, PO Box 2100, Adelaide, South Australia 5001 Email: [email protected], [email protected] Abstract: A new species, Smardaea australis P.S.Catches. & D.E.A.Catches. (Ascomycota, Pezizales, Pyronemataceae) is described and illustrated. This is the first record of the genus in Australia. The phylogeny of Smardaea and Marcelleina, genera of violaceous-black discomycetes having similar morphological traits, is discussed. Keywords: Fungi, discomycete, Pezizales, Smardaea, Marcelleina, Australia Introduction has dark coloured apothecia and globose ascospores, but differs morphologically from Smardaea in having Small black discomycetes are often difficult or impossible dark hairs on the excipulum. to identify on macro-morphological characters alone. Microscopic examination of receptacle and hymenial Marcelleina and Smardaea tissues has, until the relatively recent use of molecular Four genera of small black discomycetes with purple analysis, been the method of species and genus pigmentation, Greletia Donad., Pulparia P.Karst., determination. Marcelleina and Smardaea, had been separated by characters in part based on distribution of this Between 2001 and 2014 five collections of a small purple pigmentation, as well as on other microscopic black disc fungus with globose spores were made in characters. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Pseudotsuga Menziesii)
120 - PART 1. CONSENSUS DOCUMENTS ON BIOLOGY OF TREES Section 4. Douglas-Fir (Pseudotsuga menziesii) 1. Taxonomy Pseudotsuga menziesii (Mirbel) Franco is generally called Douglas-fir (so spelled to maintain its distinction from true firs, the genus Abies). Pseudotsuga Carrière is in the kingdom Plantae, division Pinophyta (traditionally Coniferophyta), class Pinopsida, order Pinales (conifers), and family Pinaceae. The genus Pseudotsuga is most closely related to Larix (larches), as indicated in particular by cone morphology and nuclear, mitochondrial and chloroplast DNA phylogenies (Silen 1978; Wang et al. 2000); both genera also have non-saccate pollen (Owens et al. 1981, 1994). Based on a molecular clock analysis, Larix and Pseudotsuga are estimated to have diverged more than 65 million years ago in the Late Cretaceous to Paleocene (Wang et al. 2000). The earliest known fossil of Pseudotsuga dates from 32 Mya in the Early Oligocene (Schorn and Thompson 1998). Pseudostuga is generally considered to comprise two species native to North America, the widespread Pseudostuga menziesii and the southwestern California endemic P. macrocarpa (Vasey) Mayr (bigcone Douglas-fir), and in eastern Asia comprises three or fewer endemic species in China (Fu et al. 1999) and another in Japan. The taxonomy within the genus is not yet settled, and more species have been described (Farjon 1990). All reported taxa except P. menziesii have a karyotype of 2n = 24, the usual diploid number of chromosomes in Pinaceae, whereas the P. menziesii karyotype is unique with 2n = 26. The two North American species are vegetatively rather similar, but differ markedly in the size of their seeds and seed cones, the latter 4-10 cm long for P. -
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes 1 DONALD H. PFISTER CONTENTS 5. Discinaceae . 47 6. Glaziellaceae. 47 I. Introduction ................................ 35 7. Helvellaceae . 47 II. Orbiliomycetes: An Overview.............. 37 8. Karstenellaceae. 47 III. Occurrence and Distribution .............. 37 9. Morchellaceae . 47 A. Species Trapping Nematodes 10. Pezizaceae . 48 and Other Invertebrates................. 38 11. Pyronemataceae. 48 B. Saprobic Species . ................. 38 12. Rhizinaceae . 49 IV. Morphological Features .................... 38 13. Sarcoscyphaceae . 49 A. Ascomata . ........................... 38 14. Sarcosomataceae. 49 B. Asci. ..................................... 39 15. Tuberaceae . 49 C. Ascospores . ........................... 39 XIII. Growth in Culture .......................... 50 D. Paraphyses. ........................... 39 XIV. Conclusion .................................. 50 E. Septal Structures . ................. 40 References. ............................. 50 F. Nuclear Division . ................. 40 G. Anamorphic States . ................. 40 V. Reproduction ............................... 41 VI. History of Classification and Current I. Introduction Hypotheses.................................. 41 VII. Growth in Culture .......................... 41 VIII. Pezizomycetes: An Overview............... 41 Members of two classes, Orbiliomycetes and IX. Occurrence and Distribution .............. 41 Pezizomycetes, of Pezizomycotina are consis- A. Parasitic Species . ................. 42 tently shown -
Unclassified ENV/JM/MONO(2008)30
Unclassified ENV/JM/MONO(2008)30 Organisation de Coopération et de Développement Economiques Organisation for Economic Co-operation and Development 28-Nov-2008 ___________________________________________________________________________________________ English - Or. English ENVIRONMENT DIRECTORATE JOINT MEETING OF THE CHEMICALS COMMITTEE AND Unclassified ENV/JM/MONO(2008)30 THE WORKING PARTY ON CHEMICALS, PESTICIDES AND BIOTECHNOLOGY SERIES ON HARMONISATION OF REGULATORY OVERSIGHT IN BIOTECHNOLOGY Number 43 CONSENSUS DOCUMENT ON THE BIOLOGY OF DOUGLAS-FIR (Pseudotsuga menziesii (Mirb.) Franco) English - Or. English JT03256472 Document complet disponible sur OLIS dans son format d'origine Complete document available on OLIS in its original format ENV/JM/MONO(2008)30 Also published in the Series on Harmonisation of Regulatory Oversight in Biotechnology: No. 1, Commercialisation of Agricultural Products Derived through Modern Biotechnology: Survey Results (1995) No. 2, Analysis of Information Elements Used in the Assessment of Certain Products of Modern Biotechnology (1995) No. 3, Report of the OECD Workshop on the Commercialisation of Agricultural Products Derived through Modern Biotechnology (1995) No. 4, Industrial Products of Modern Biotechnology Intended for Release to the Environment: The Proceedings of the Fribourg Workshop (1996) No. 5, Consensus Document on General Information concerning the Biosafety of Crop Plants Made Virus Resistant through Coat Protein Gene-Mediated Protection (1996) No. 6, Consensus Document on Information Used in the Assessment of Environmental Applications Involving Pseudomonas (1997) No. 7, Consensus Document on the Biology of Brassica napus L. (Oilseed Rape) (1997) No. 8, Consensus Document on the Biology of Solanum tuberosum subsp. tuberosum (Potato) (1997) No. 9, Consensus Document on the Biology of Triticum aestivum (Bread Wheat) (1999) No. -
A Monograph of Otidea (Pyronemataceae, Pezizomycetes)
Persoonia 35, 2015: 166–229 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X688000 A monograph of Otidea (Pyronemataceae, Pezizomycetes) I. Olariaga1, N. Van Vooren2, M. Carbone3, K. Hansen1 Key words Abstract The easily recognised genus Otidea is subjected to numerous problems in species identification. A number of old names have undergone various interpretations, materials from different continents have not been compared and Flavoscypha misidentifications occur commonly. In this context, Otidea is monographed, based on our multiple gene phylogenies ITS assessing species boundaries and comparative morphological characters (see Hansen & Olariaga 2015). All names ITS1 minisatellites combined in or synonymised with Otidea are dealt with. Thirty-three species are treated, with full descriptions and LSU colour illustrations provided for 25 of these. Five new species are described, viz. O. borealis, O. brunneo parva, O. ore- Otideopsis gonensis, O. pseudoleporina and O. subformicarum. Otidea cantharella var. minor and O. onotica var. brevispora resinous exudates are elevated to species rank. Otideopsis kaushalii is combined in the genus Otidea. A key to the species of Otidea is given. An LSU dataset containing 167 sequences (with 44 newly generated in this study) is analysed to place collections and determine whether the named Otidea sequences in GenBank were identified correctly. Fourty-nine new ITS sequences were generated in this study. The ITS region is too variable to align across Otidea, but had low intraspecific variation and it aided in species identifications. Thirty type collections were studied, and ITS and LSU sequences are provided for 12 of these. A neotype is designated for O. -
Truffle Trouble: What Happened to the Tuberales?
mycological research 111 (2007) 1075–1099 journal homepage: www.elsevier.com/locate/mycres Truffle trouble: what happened to the Tuberales? Thomas LÆSSØEa,*, Karen HANSENb,y aDepartment of Biology, Copenhagen University, DK-1353 Copenhagen K, Denmark bHarvard University Herbaria – Farlow Herbarium of Cryptogamic Botany, Cambridge, MA 02138, USA article info abstract Article history: An overview of truffles (now considered to belong in the Pezizales, but formerly treated in Received 10 February 2006 the Tuberales) is presented, including a discussion on morphological and biological traits Received in revised form characterizing this form group. Accepted genera are listed and discussed according to a sys- 27 April 2007 tem based on molecular results combined with morphological characters. Phylogenetic Accepted 9 August 2007 analyses of LSU rDNA sequences from 55 hypogeous and 139 epigeous taxa of Pezizales Published online 25 August 2007 were performed to examine their relationships. Parsimony, ML, and Bayesian analyses of Corresponding Editor: Scott LaGreca these sequences indicate that the truffles studied represent at least 15 independent line- ages within the Pezizales. Sequences from hypogeous representatives referred to the fol- Keywords: lowing families and genera were analysed: Discinaceae–Morchellaceae (Fischerula, Hydnotrya, Ascomycota Leucangium), Helvellaceae (Balsamia and Barssia), Pezizaceae (Amylascus, Cazia, Eremiomyces, Helvellaceae Hydnotryopsis, Kaliharituber, Mattirolomyces, Pachyphloeus, Peziza, Ruhlandiella, Stephensia, Hypogeous Terfezia, and Tirmania), Pyronemataceae (Genea, Geopora, Paurocotylis, and Stephensia) and Pezizaceae Tuberaceae (Choiromyces, Dingleya, Labyrinthomyces, Reddellomyces, and Tuber). The different Pezizales types of hypogeous ascomata were found within most major evolutionary lines often nest- Pyronemataceae ing close to apothecial species. Although the Pezizaceae traditionally have been defined mainly on the presence of amyloid reactions of the ascus wall several truffles appear to have lost this character. -
Pezizomycetes, Ascomycota) Clarifies Relationships and Evolution of Selected Life History Traits ⇑ Karen Hansen , Brian A
Molecular Phylogenetics and Evolution 67 (2013) 311–335 Contents lists available at SciVerse ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A phylogeny of the highly diverse cup-fungus family Pyronemataceae (Pezizomycetes, Ascomycota) clarifies relationships and evolution of selected life history traits ⇑ Karen Hansen , Brian A. Perry 1, Andrew W. Dranginis, Donald H. Pfister Department of Organismic and Evolutionary Biology, Harvard University, 22 Divinity Ave., Cambridge, MA 02138, USA article info abstract Article history: Pyronemataceae is the largest and most heterogeneous family of Pezizomycetes. It is morphologically and Received 26 April 2012 ecologically highly diverse, comprising saprobic, ectomycorrhizal, bryosymbiotic and parasitic species, Revised 24 January 2013 occurring in a broad range of habitats (on soil, burnt ground, debris, wood, dung and inside living bryo- Accepted 29 January 2013 phytes, plants and lichens). To assess the monophyly of Pyronemataceae and provide a phylogenetic Available online 9 February 2013 hypothesis of the group, we compiled a four-gene dataset including one nuclear ribosomal and three pro- tein-coding genes for 132 distinct Pezizomycetes species (4437 nucleotides with all markers available for Keywords: 80% of the total 142 included taxa). This is the most comprehensive molecular phylogeny of Pyronemata- Ancestral state reconstruction ceae, and Pezizomycetes, to date. Three hundred ninety-four new sequences were generated during this Plotting SIMMAP results Introns project, with the following numbers for each gene: RPB1 (124), RPB2 (99), EF-1a (120) and LSU rDNA Carotenoids (51). The dataset includes 93 unique species from 40 genera of Pyronemataceae, and 34 species from 25 Ectomycorrhizae genera representing an additional 12 families of the class. -
Diseases of Cotton X
INTERIM REPORT 2010 to 2012 Diseases of Cotton X Karen Kirkby Peter Lonergan Bethany Cooper Locked Bag 1000, Narrabri, NSW, 2390, Australia 1 Contents Contents .........................................................................................................................2 Contact Details ..............................................................................................................3 Intellectual Property developed within the projects. .....................................................4 Acknowledgements.........................................................................................................4 Background....................................................................................................................5 Objectives and extent to which they have been achieved ..............................................7 Chapter 1 - Disease Surveys..........................................................................................9 Introduction: ................................................................................................................9 Method and Materials:................................................................................................16 Results & Discussion:..................................................................................................17 Conclusions:...............................................................................................................32 Chapter 2 - Seed Treatments .......................................................................................34 -
Final Report 2013
FINAL REPORT 2013 Part 1 - Summary Details Please use your TAB key to complete Parts 1 & 2. CRDC Project Number: CRC1002A Project Title: Diseases of Cotton X Project Commencement Date: 2009 Project Completion Date: 2013 CRDC Program: Crop Protection Part 2 – Contact Details Administrator: Dr Cara Brooks Organisation: NSW DPI Postal Address: Locked Bag 21, Orange, NSW, 2800 Ph: 0263 913651 Fax: E-mail: [email protected] Principal Researcher: Dr Karen Kirkby Organisation: NSW DPI Postal Address: ACRI, Locked Bag 1000, Narrabri, NSW, 2390 Ph: 0267 992454 Fax: 0267 991503 E-mail: [email protected] Supervisor: Dr Leigh Pilkington Organisation: NSW DPI Postal Address: Private Bag 4008, Narellan, NSW, 2567 Ph: 0246 406333 Fax: E-mail: [email protected] Signature of Research Provider Representative: 1 of 135 Part 3 – Final Report Acknowledgements The principal researcher extends sincere thanks to Peter Lonergan, Bethany Cooper and Sharlene Roser who have each provided invaluable technical assistance across all aspects of the project. Your efforts made achieving the project milestones possible. The principle researcher thanks all of the grower co-operators whose assistance and collaboration made this project possible. The principle researcher also extends gratitude to Cotton Catchment Communities CRC, Cotton Research and Development Corporation and Cotton Australia, who provided substantial investment in the professional development of the principle researcher, and in the project. Background 1. Outline the background to the project. Three of the most economically damaging and recalcitrant diseases affecting cotton in New South Wales are Fusarium Wilt, Verticillium Wilt and black root rot. -
<I>Phymatotrichopsis Omnivora</I>
Persoonia 22, 2009: 63 –74 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158509X430930 Molecular systematics of the cotton root rot pathogen, Phymatotrichopsis omnivora S.M. Marek1, K. Hansen2, M. Romanish3, 4, R.G. Thorn3 Key words Abstract Cotton root rot is an important soilborne disease of cotton and numerous dicot plants in the south-western United States and Mexico. The causal organism, Phymatotrichopsis omnivora (= Phymatotrichum omnivorum), is Ozonium known only as an asexual, holoanamorphic (mitosporic) fungus, and produces conidia resembling those of Botrytis. Pezizales Although the corticoid basidiomycetes Phanerochaete omnivora (Polyporales) and Sistotrema brinkmannii (Cantharel Phylogeny lales; both Agaricomycetes) have been suggested as teleomorphs of Phymatotrichopsis omnivora, phylogenetic Phymatotrichum root rot analyses of nuclear small- and large-subunit ribosomal DNA and subunit 2 of RNA polymerase II from multiple Pulchromyces fimicola isolates indicate that it is neither a basidiomycete nor closely related to other species of Botrytis (Sclerotiniaceae, rDNA Leotiomycetes). Phymatotrichopsis omnivora is a member of the family Rhizinaceae, Pezizales (Ascomycota: RPB2 Pezizomycetes) allied to Psilopezia and Rhizina. Texas Article info Received: 29 May 2008; Accepted: 23 February 2009; Published: 11 March 2009. INTRODUCTION Taxonomy The confused taxonomic history of the cotton root rot fungus A devastating disease of cotton in Texas, which caused large goes back more than a century. The causal agent was first numbers of plants in affected areas to suddenly wilt and die, identified by W.G. Farlow as Ozonium auricomum Link, based was first reported in the 1880s (Pammel 1888, 1889). The on nonsporulating mycelium associated with diseased roots disease has been variably called cotton root rot (after the (Pammel 1888). -
On Phymatotrichopsis Omnivora (Cotton Root Rot)
EFFECTS OF OILSEED MEALS AND ISOTHIOCYANATES (ITCS) ON PHYMATOTRICHOPSIS OMNIVORA (COTTON ROOT ROT) AND SOIL MICROBIAL COMMUNITIES A Dissertation by PING HU Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY May 2012 Major Subject: Soil Science Effects of Oilseed Meals and Isothiocyanates (ITCS) on Phymatotrichopsis omnivora (Cotton Root Rot) and Soil Microbial Communities Copyright 2012 Ping Hu EFFECTS OF OILSEED MEALS AND ISOTHIOCYANATES (ITCS) ON PHYMATOTRICHOPSIS OMNIVORA (COTTON ROOT ROT) AND SOIL MICROBIAL COMMUNITIES A Dissertation by PING HU Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Approved by: Co-chairs of Committee, Terry J. Gentry Frank M. Hons Committee Members, Hongbin Zhang Shuhua Yuan Emily B. Hollister Head of Department, David Baltensperger May 2012 Major Subject: Soil Science iii ABSTRACT Effects of Oilseed Meals and Isothiocyanates (ITCS) on Phymatotrichopsis omnivora (Cotton Root Rot) and Soil Microbial Communities. (May 2012) Ping Hu, B.S., Nankai University; M.S., Kansas State University Co-Chairs of Advisory Committee: Dr. Terry J. Gentry Dr. Frank M. Hons The meals from many oilseed crops contain biocidal chemicals that are known to inhibit the growth and activity of several soil pathogens, though little is known concerning impacts on whole soil microbial communities. We investigated the effect of oilseed meals (SMs) from both brassicaceous plants, including mustard and camelina, as well as non-brassicaceous plants, including jatropha and flax, on P. omnivora (the casual agent of cotton root rot) in Branyon clay soil (at 1 and 5% application rates).