2 Pezizomycotina: Pezizomycetes, Orbiliomycetes
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Ascomyceteorg 06-05 Ascomyceteorg
“The story so far...” An Interim Bibliography of Hans-Otto Baral for the Years 1981-2014 Martin BEMMANN Ascomycete.org, 6 (5) : 95-98. Décembre 2014 Mise en ligne le 18/12/2014 Hans-Otto Baral, aka “Zotto”, has contributed a vast amount of pa- BARAL H.-O. 1987. — Der Apikalapparat der Helotiales. Eine lichtmi- pers and digital publications which have inspired not only his aca- kroskopische Studie über Arten mit Amyloidring. Zeitschrift für demic colleagues but also the community of amateur mycologists, Mykologie, 53 (1): 119-135. whose efforts he has included in his ascomycete research for de- [http://www.dgfm-ev.de/sites/default/files/ZM531119Baral.pdf] cades, thus helping stimulate their own work. This compilation of BARAL H.-O. 1989. — Beiträge zur Taxonomie der Discomyceten I. his publications and ephemeral works to date is also intended as a Zeitschrift für Mykologie, 55 (1): 119-130. guide for all those who are unaware of its extent, and includes keys [http://www.dgfm-ev.de/sites/default/files/ZM551119Baral.pdf] and some otherwise unpublished papers shared on the DVD “In Vivo BARAL H.-O. 1989. — Beiträge zur Taxonomie der Discomyceten II. Veritas 2005”. Die Calycellina-Arten mit 4sporigen Asci. Beiträge zur Kenntnis der The form “H.-O.” Baral as opposed to “H. O.” Baral has been used Pilze Mitteleuropas, 5: 209-236. consistently throughout, though it varies in the different publica- BARAL H.-O. 1992. — Vital versus herbarium taxonomy: morphologi- tions. Only names of genera and species are set in italics even if this cal differences between living and dead cells of Ascomycetes, and deviates from the original titles. -
Peziza and Pezizaceae Inferred from Multiple Nuclear Genes: RPB2, -Tubulin, and LSU Rdna
Molecular Phylogenetics and Evolution 36 (2005) 1–23 www.elsevier.com/locate/ympev Evolutionary relationships of the cup-fungus genus Peziza and Pezizaceae inferred from multiple nuclear genes: RPB2, -tubulin, and LSU rDNA Karen Hansen ¤, Katherine F. LoBuglio, Donald H. PWster Harvard University Herbaria, Cambridge, MA 02138, USA Received 5 May 2004; revised 17 December 2004 Available online 22 April 2005 Abstract To provide a robust phylogeny of Pezizaceae, partial sequences from two nuclear protein-coding genes, RPB2 (encoding the sec- ond largest subunit of RNA polymerase II) and -tubulin, were obtained from 69 and 72 specimens, respectively, to analyze with nuclear ribosomal large subunit RNA gene sequences (LSU). The three-gene data set includes 32 species of Peziza, and 27 species from nine additional epigeous and six hypogeous (truZe) pezizaceous genera. Analyses of the combined LSU, RPB2, and -tubulin data set using parsimony, maximum likelihood, and Bayesian approaches identify 14 Wne-scale lineages within Pezizaceae. Species of Peziza occur in eight of the lineages, spread among other genera of the family, conWrming the non-monophyly of the genus. Although parsimony analyses of the three-gene data set produced a nearly completely resolved strict consensus tree, with increased conWdence, relationships between the lineages are still resolved with mostly weak bootstrap support. Bayesian analyses of the three- gene data, however, show support for several more inclusive clades, mostly congruent with Bayesian analyses of RPB2. No strongly supported incongruence was found among phylogenies derived from the separate LSU, RPB2, and -tubulin data sets. The RPB2 region appeared to be the most informative single gene region based on resolution and clade support, and accounts for the greatest number of potentially parsimony informative characters within the combined data set, followed by the LSU and the -tubulin region. -
Reproductive Isolation: Evidence That Ascobolus Stercorarius and Ascobolus Furfuraceus Are Two Species, Not One
Fungal Genetics Reports Volume 51 Article 10 Reproductive Isolation: Evidence that Ascobolus stercorarius and Ascobolus furfuraceus are two species, not one G. N. Bistis Drew University Follow this and additional works at: https://newprairiepress.org/fgr This work is licensed under a Creative Commons Attribution-Share Alike 4.0 License. Recommended Citation Bistis, G. N. (2004) "Reproductive Isolation: Evidence that Ascobolus stercorarius and Ascobolus furfuraceus are two species, not one," Fungal Genetics Reports: Vol. 51, Article 10. https://doi.org/ 10.4148/1941-4765.1140 This Regular Paper is brought to you for free and open access by New Prairie Press. It has been accepted for inclusion in Fungal Genetics Reports by an authorized administrator of New Prairie Press. For more information, please contact [email protected]. Reproductive Isolation: Evidence that Ascobolus stercorarius and Ascobolus furfuraceus are two species, not one Abstract Strains obtained from the germination of 30-40 year old ascospores from seven stocks of the heterothallicAscobolus stercorarius - furfuraceous complex were mated in all combinations. All st X st and fu X fu pairings were fertile (ascospores) whereas all st X fu pairings were sterile (no ascospores). Based on this reproductive isolation between st and fu strains I conclude that the complex consists of two species. The block that segregated the two species is probably some stage in the establishment of the dikaryotic phase in ascogenous hyphae. One hypothesis is that this block is at the stage of nuclear recognition. This regular paper is available in Fungal Genetics Reports: https://newprairiepress.org/fgr/vol51/iss1/10 Bistis: Reproductive Isolation: Evidence that Ascobolus stercorarius and Number 51, 2004 23 Reproductive Isolation: Evidence that Ascobolus stercorarius and Ascobolus furfuraceus are two species, not one. -
Pezizales, Pyronemataceae), Is Described from Australia Pamela S
Swainsona 31: 17–26 (2017) © 2017 Board of the Botanic Gardens & State Herbarium (Adelaide, South Australia) A new species of small black disc fungi, Smardaea australis (Pezizales, Pyronemataceae), is described from Australia Pamela S. Catcheside a,b, Samra Qaraghuli b & David E.A. Catcheside b a State Herbarium of South Australia, GPO Box 1047, Adelaide, South Australia 5001 Email: [email protected] b School of Biological Sciences, Flinders University, PO Box 2100, Adelaide, South Australia 5001 Email: [email protected], [email protected] Abstract: A new species, Smardaea australis P.S.Catches. & D.E.A.Catches. (Ascomycota, Pezizales, Pyronemataceae) is described and illustrated. This is the first record of the genus in Australia. The phylogeny of Smardaea and Marcelleina, genera of violaceous-black discomycetes having similar morphological traits, is discussed. Keywords: Fungi, discomycete, Pezizales, Smardaea, Marcelleina, Australia Introduction has dark coloured apothecia and globose ascospores, but differs morphologically from Smardaea in having Small black discomycetes are often difficult or impossible dark hairs on the excipulum. to identify on macro-morphological characters alone. Microscopic examination of receptacle and hymenial Marcelleina and Smardaea tissues has, until the relatively recent use of molecular Four genera of small black discomycetes with purple analysis, been the method of species and genus pigmentation, Greletia Donad., Pulparia P.Karst., determination. Marcelleina and Smardaea, had been separated by characters in part based on distribution of this Between 2001 and 2014 five collections of a small purple pigmentation, as well as on other microscopic black disc fungus with globose spores were made in characters. -
Evolution of Nematode-Trapping Cells of Predatory Fungi of the Orbiliaceae Based on Evidence from Rrna-Encoding DNA and Multiprotein Sequences
Evolution of nematode-trapping cells of predatory fungi of the Orbiliaceae based on evidence from rRNA-encoding DNA and multiprotein sequences Ying Yang†‡, Ence Yang†‡, Zhiqiang An§, and Xingzhong Liu†¶ †Key Laboratory of Systematic Mycology and Lichenology, Institute of Microbiology, Chinese Academy of Sciences 3A Datun Rd, Chaoyang District, Beijing 100101, China; ‡Graduate University of Chinese Academy of Sciences, Beijing 100049, China; and §Merck Research Laboratories, WP26A-4000, 770 Sumneytown Pike, West Point, PA 19486-0004 Communicated by Joan Wennstrom Bennett, Rutgers, The State University of New Jersey, New Brunswick, NJ, March 27, 2007 (received for review October 28, 2006) Among fungi, the basic life strategies are saprophytism, parasitism, These trapping devices all capture nematodes by means of an and predation. Fungi in Orbiliaceae (Ascomycota) prey on animals adhesive layer covering part or all of the device surfaces. The by means of specialized trapping structures. Five types of trapping constricting ring (CR), the fifth and most sophisticated trapping devices are recognized, but their evolutionary origins and diver- device (Fig. 1D) captures prey in a different way. When a gence are not well understood. Based on comprehensive phylo- nematode enters a CR, the three ring cells are triggered to swell genetic analysis of nucleotide sequences of three protein-coding rapidly inwards and firmly lasso the victim within 1–2 sec. genes (RNA polymerase II subunit gene, rpb2; elongation factor 1-␣ Phylogenetic analysis of ribosomal RNA gene sequences indi- ␣ gene, ef1- ; and ß tubulin gene, bt) and ribosomal DNA in the cates that fungi possessing the same trapping device are in the internal transcribed spacer region, we have demonstrated that the same clade (3, 8–11). -
Studies of Coprophilous Ascomycetes in Kenya – Ascobolus Species from Wildlife Dung
Current Research in Environmental & Applied Mycology Doi 10.5943/cream/2/1/1 Studies of coprophilous ascomycetes in Kenya – Ascobolus species from wildlife dung Mungai PG1,2,3, Njogu JG3, Chukeatirote E1,2 and Hyde KD1,2* 1Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand 3Biodiversity Research and Monitoring Division, Kenya Wildlife Service, P.O. Box 40241 00100 Nairobi, Kenya Mungai PG, Njogu JG, Chukeatirote E, Hyde KD 2012 – Studies of coprophilous ascomycetes in Kenya – Ascobolus species from wildlife dung. Current Research in Environmental & Applied Mycology 2(1), 1-16, Doi 10.5943/cream/2/1/1 Species of coprophilous Ascobolus were examined in a study of coprophilous fungi in different habitats and wildlife dung types from National Parks in Kenya. Dung samples were collected in the field and returned to the laboratory where they were incubated in moist chamber culture. Coprophilous Ascobolus were isolated from giraffe, impala, common zebra, African elephant dung, Cape buffalo, dikdik, hippopotamus, black rhinoceros and waterbuck dung. Six species, Ascobolus amoenus, A. bistisii, A. calesco, A. immersus, A. nairobiensis and A. tsavoensis are identified and described. Ascobolus calesco, A. amoenus and A. bistisii were the most common. Two new species, Ascobolus nairobiensis and A. tsavoensis are introduced in this paper. In addition, two others, Ascobolus bistisii and A. calesco are new records in Kenya and are described and illustrated. The diversity of coprophilous Ascobolus from wildlife dung in Kenya as deduced from this study is very high. Key words – Ascobolus amoenus – A. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Orbilia Fimicola, a Nematophagous Discomycete and Its Arthrobotrys Anamorph
Mycologia, 86(3), 1994, pp. 451-453. ? 1994, by The New York Botanical Garden, Bronx, NY 10458-5126 Orbilia fimicola, a nematophagous discomycete and its Arthrobotrys anamorph Donald H. Pfister range of fungi observed. In field studies, Angel and Farlow Reference Library and Herbarium, Harvard Wicklow (1983), for example, showed the presence of University, Cambridge, Massachusetts 02138 coprophilous fungi for as long as 54 months. Deer dung was placed in a moist chamber 1 day after it was collected. The moist chamber was main? Abstract: Cultures derived from a collection of Orbilia tained at room temperature and in natural light. It fimicola produced an Arthrobotrys anamorph. This ana? underwent periodic drying. Cultures were derived from morph was identified as A. superba. A discomycete ascospores gathered by fastening ascomata to the in? agreeing closely with 0. fimicola was previously re?side of a petri plate lid which contained corn meal ported to be associated with a culture of A. superba agar (BBL). Germination of deposited ascospores was but no definitive connection was made. In the present observed through the bottom of the petri plate. Cul? study, traps were formed in the Arthrobotrys cultures tures were kept at room temperature in natural light. when nematodes were added. The hypothesis is put Ascomata from the moist chamber collection are de? forth that other Orbilia species might be predators posited of in FH. nematodes or invertebrates based on their ascospore The specimen of Orbilia fimicola was studied and and conidial form. compared with the original description. The mor? Key Words: Arthrobotrys, nematophagy, Orbilia phology of the Massachusetts collection agrees with the original description; diagnostic features are shown in Figs. -
Wood Staining Fungi Revealed Taxonomic Novelties in Pezizomycotina: New Order Superstratomycetales and New Species Cyanodermella Oleoligni
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 85: 107–124. Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni E.J. van Nieuwenhuijzen1, J.M. Miadlikowska2*, J.A.M.P. Houbraken1*, O.C.G. Adan3, F.M. Lutzoni2, and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Department of Biology, Duke University, Durham, NC 27708, USA; 3Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, The Netherlands *Correspondence: J.M. Miadlikowska, [email protected]; J.A.M.P. Houbraken, [email protected] Abstract: A culture-based survey of staining fungi on oil-treated timber after outdoor exposure in Australia and the Netherlands uncovered new taxa in Pezizomycotina. Their taxonomic novelty was confirmed by phylogenetic analyses of multi-locus sequences (ITS, nrSSU, nrLSU, mitSSU, RPB1, RPB2, and EF-1α) using multiple reference data sets. These previously unknown taxa are recognised as part of a new order (Superstratomycetales) potentially closely related to Trypetheliales (Dothideomycetes), and as a new species of Cyanodermella, C. oleoligni in Stictidaceae (Ostropales) part of the mostly lichenised class Lecanoromycetes. Within Superstratomycetales a single genus named Superstratomyces with three putative species: S. flavomucosus, S. atroviridis, and S. albomucosus are formally described. Monophyly of each circumscribed Superstratomyces species was highly supported and the intraspecific genetic variation was substantially lower than interspecific differences detected among species based on the ITS, nrLSU, and EF-1α loci. Ribosomal loci for all members of Superstratomyces were noticeably different from all fungal sequences available in GenBank. -
New Records of Aspergillus Allahabadii and Penicillium Sizovae
MYCOBIOLOGY 2018, VOL. 46, NO. 4, 328–340 https://doi.org/10.1080/12298093.2018.1550169 RESEARCH ARTICLE Four New Records of Ascomycete Species from Korea Thuong T. T. Nguyen, Monmi Pangging, Seo Hee Lee and Hyang Burm Lee Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture & Life Sciences, Chonnam National University, Gwangju, Korea ABSTRACT ARTICLE HISTORY While evaluating fungal diversity in freshwater, grasshopper feces, and soil collected at Received 3 July 2018 Dokdo Island in Korea, four fungal strains designated CNUFC-DDS14-1, CNUFC-GHD05-1, Revised 27 September 2018 CNUFC-DDS47-1, and CNUFC-NDR5-2 were isolated. Based on combination studies using Accepted 28 October 2018 phylogenies and morphological characteristics, the isolates were confirmed as Ascodesmis KEYWORDS sphaerospora, Chaetomella raphigera, Gibellulopsis nigrescens, and Myrmecridium schulzeri, Ascomycetes; fecal; respectively. This is the first records of these four species from Korea. freshwater; fungal diversity; soil 1. Introduction Paraphoma, Penicillium, Plectosphaerella, and Stemphylium [7–11]. However, comparatively few Fungi represent an integral part of the biomass of any species of fungi have been described [8–10]. natural environment including soils. In soils, they act Freshwater nourishes diverse habitats for fungi, as agents governing soil carbon cycling, plant nutri- such as fallen leaves, plant litter, decaying wood, tion, and pathology. Many fungal species also adapt to aquatic plants and insects, and soils. Little -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Notes on British Species of Byssonectria
Mycol. Res 100 (7). 881-882 (1996) Prmled in Greal Bnlam 881 Notes on British species of Byssonectria Y.-J. YA01,2 AND B. M. SPOONERl 1 Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK 2 School of Biomolecular Sciences, Liverpool John Moores UnIVerslly, Byrom Street, LIverpool L3 3Ar, UK Notes on the taxonomy of the species reported from Britain as Byssonectria and Inermisia are presented. Two species, B. fusispora and B. terrestris, are retained in the British list, although fresh collections are required to confirm the distinction between them. Byssoneetna tetraspora and Inermisia pi/ifera should be placed in Oetospora. Observations on the type of O. pi/ifera are provided to update the species description. Byssonectria P. Karst., originally referred to the Hypocreales cyanobacteria grow, and in having larger ascospores (24'0• Lindau, was shown by Korf (1971) to be an earlier name for 29'0 x 7'0-II'0 I-lm). The subiculum is, in fact, variable Inermisia Rifai (Rifai, 1968). The genus has been distinguished amongst British collections previously named as either B. from Octospora Hedw. on the basis of excipular structure, and fusispora or Peziza aggregata, ranging from very conspicuous to the non-bryophilous (Benkert, 1987) or nitrogen-rich (Pfister, scanty or even absent. Such variation is seen especially in 1993) habitat, although Khare & Tewari (1978) treated these those collections from plant debris; collections on soil rarely names as synonyms. exhibit development of a subiculum. This may imply that the Three accepted names in Byssonectria and Inermisia, B. development of subiculum is related to the substrate.