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The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
The Effect of Decayed Or Downed Wood on the Structure and Function of Ectomycorrhizal Fungal Communities at a High Elevation Forest
The effect of decayed or downed wood on the structure and function of ectomycorrhizal fungal communities at a high elevation forest by Jennifer Karen Marie Walker B.Sc., The University of Northern British Columbia, 2003 M.Sc., The University of Northern British Columbia, 2006 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in The College of Graduate Studies (Biology) THE UNIVERSITY OF BRITISH COLUMBIA (Okanagan) March 2012 !Jennifer Karen Marie Walker, 2012 Abstract Shifts in ectomycorrhizal (ECM) fungal community composition occur after clearcut logging, resulting in the loss of forest-associated fungi and potential ecosystem function. Coarse woody debris (CWD) includes downed wood generated during logging; decayed downed wood is a remnant of the original forest, and important habitat for ECM fungi. Over the medium term, while logs remain hard, it is not known if they influence ECM fungal habitat. I tested for effects of downed wood on ECM fungal communities by examining ECM roots and fungal hyphae of 10-yr-old saplings in CWD retention and removal plots in a subalpine ecosystem. I then tested whether downed and decayed wood provided ECM fungal habitat by planting nonmycorrhizal spruce seedlings in decayed wood, downed wood, and mineral soil microsites in the clearcuts and adjacent forest plots, and harvested them 1 and 2 years later. I tested for differences in the community structure of ECM root tips (Sanger sequencing) among all plots and microsites, and of ECM fungal hyphae (pyrosequencing) in forest microsites. I assayed the activities of eight extracellular enzymes in order to compare community function related to nutrient acquisition. -
Fungi Determined in Ankara University Tandoğan Campus Area (Ankara-Turkey)
http://dergipark.gov.tr/trkjnat Trakya University Journal of Natural Sciences, 20(1): 47-55, 2019 ISSN 2147-0294, e-ISSN 2528-9691 Research Article DOI: 10.23902/trkjnat.521256 FUNGI DETERMINED IN ANKARA UNIVERSITY TANDOĞAN CAMPUS AREA (ANKARA-TURKEY) Ilgaz AKATA1*, Deniz ALTUNTAŞ1, Şanlı KABAKTEPE2 1Ankara University, Faculty of Science, Department of Biology, Ankara, TURKEY 2Turgut Ozal University, Battalgazi Vocational School, Battalgazi, Malatya, TURKEY *Corresponding author: ORCID ID: orcid.org/0000-0002-1731-1302, e-mail: [email protected] Cite this article as: Akata I., Altuntaş D., Kabaktepe Ş. 2019. Fungi Determined in Ankara University Tandoğan Campus Area (Ankara-Turkey). Trakya Univ J Nat Sci, 20(1): 47-55, DOI: 10.23902/trkjnat.521256 Received: 02 February 2019, Accepted: 14 March 2019, Online First: 15 March 2019, Published: 15 April 2019 Abstract: The current study is based on fungi and infected host plant samples collected from Ankara University Tandoğan Campus (Ankara) between 2017 and 2019. As a result of the field and laboratory studies, 148 fungal species were identified. With the addition of formerly recorded 14 species in the study area, a total of 162 species belonging to 87 genera, 49 families, and 17 orders were listed. Key words: Ascomycota, Basidiomycota, Ankara, Turkey. Özet: Bu çalışma, Ankara Üniversitesi Tandoğan Kampüsü'nden (Ankara) 2017 ve 2019 yılları arasında toplanan mantar ve enfekte olmuş konukçu bitki örneklerine dayanmaktadır. Arazi ve laboratuvar çalışmaları sonucunda 148 mantar türü tespit edilmiştir. Daha önce bildirilen 14 tür dahil olmak üzere 17 ordo, 49 familya, 87 cinse mensup 162 tür listelenmiştir. Introduction Ankara, the capital city of Turkey, is situated in the compiled literature data were published as checklists in center of Anatolia, surrounded by Çankırı in the north, different times (Bahçecioğlu & Kabaktepe 2012, Doğan Bolu in the northwest, Kırşehir, and Kırıkkale in the east, et al. -
Systematic Study of Fungi in the Genera Underwoodia and Gymnohydnotrya (Pezizales) with the Description of Three New South American Species
Persoonia 44, 2020: 98–112 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2020.44.04 Resurrecting the genus Geomorium: Systematic study of fungi in the genera Underwoodia and Gymnohydnotrya (Pezizales) with the description of three new South American species N. Kraisitudomsook1, R.A. Healy1, D.H. Pfister2, C. Truong3, E. Nouhra4, F. Kuhar4, A.B. Mujic1,5, J.M. Trappe6,7, M.E. Smith1,* Key words Abstract Molecular phylogenetic analyses have addressed the systematic position of several major Northern Hemisphere lineages of Pezizales but the taxa of the Southern Hemisphere remain understudied. This study focuses Geomoriaceae on the molecular systematics and taxonomy of Southern Hemisphere species currently treated in the genera Under Helvellaceae woodia and Gymnohydnotrya. Species in these genera have been identified as the monophyletic /gymnohydno trya Patagonia lineage, but no further research has been conducted to determine the evolutionary origin of this lineage or its relation- South American fungi ship with other Pezizales lineages. Here, we present a phylogenetic study of fungal species previously described truffle systematics in Underwoodia and Gymnohydnotrya, with sampling of all but one described species. We revise the taxonomy of Tuberaceae this lineage and describe three new species from the Patagonian region of South America. Our results show that none of these Southern Hemisphere species are closely related to Underwoodia columnaris, the type species of the genus Underwoodia. Accordingly, we recognize the genus Geomorium described by Spegazzini in 1922 for G. fuegianum. We propose the new family, Geomoriaceae fam. nov., to accommodate this phylogenetically and morphologically unique Southern Hemisphere lineage. -
Balsamia Oblonga (Helvellaceae), a New Species from a Subalpine Forest in Japan 日本の亜高山帯において採集された新種ナガミノツチレイシタケ Balsamia Oblonga (ノボリリュウ科)
Online publication; available at: http://jats-truffles.org/truffology/ Truffology 4 (1): 1–7 (2021) Original peer-reviewed article (原著論文 ; 査読有) Balsamia oblonga (Helvellaceae), a new species from a subalpine forest in Japan 日本の亜高山帯において採集された新種ナガミノツチレイシタケ Balsamia oblonga (ノボリリュウ科) Kohei Yamamoto1*, Naoki Endo2, Muneyuki Ohmae3, Takamichi Orihara4 1* 2 3 4 山本 航平 , 遠藤 直樹 , 大前 宗之 , 折原 貴道 1 Department of Botany, National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba-shi, Ibaraki 305-0005, Japan 国立科学博物館植物研究部, 〒 305-0005 茨城県つくば市天久保 4-1-1 2 Fungus/Mushroom Resource and Research Center, Faculty of Agriculture, Tottori University, 4-101 Koyama, Tottori 680-8553, Japan 鳥取大学農学部附属菌類きのこ遺伝資源研究センター, 〒 680-8553 鳥取県鳥取市湖山町南 4 丁目 101 3 Hokken Co. Ltd., 7-3 Ekihigashimachi, Mibu-machi, Shimotsuga-gun, Tochigi 321-0222, Japan 株式会社北研, 〒 321-0222 栃木県下都賀郡壬生町駅東町 7-3 4 Kanagawa Prefectural Museum of Natural History, 499 Iryuda, Odawara-shi, Kanagawa 250-0031, Japan 神奈川県立生命の星 ・ 地球博物館, 〒 250-0031 神奈川県小田原市入生田 499 * Corresponding author (主著者) E-mail: [email protected] Abstract Balsamia is a member of the family Helvellaceae, and all but one of the 25 species form subterranean truffle-like ascomata. This genus is broadly distributed across the Northern Hemisphere, i.e., Europe, North America, and Asia (China). However, this genus had not been found in Japan. In September 2013, an unidentified truffle-like fungus was collected in a subalpine forest in Gunma Prefecture, Japan. Morphological observations and molecular phylogenetic analyses revealed that this fungus belongs to the genus Balsamia. Here, we describe the new species B. oblonga. This species is characterized by large, oblong ascospores (up to 33.5 µm) with a large length- to-width ratio (up to 3.3). -
Trakya Üniversitesi Fen Bilimleri Enstitüsü Binası, Balkan Yerleşkesi – 22030 Edirne / TÜRKİYE E-Mail: [email protected] Tel: +90 284 2358230 Fax: +90 284 2358237
TRAKYA UNIVERSITY JOURNAL OF NATURAL SCIENCES 20 Volume 1 Number April 2019 TUJNS TRAKYA UNIVERSITY JOURNAL OF NATURAL SCIENCES Trakya Univ J Nat Sci ISSN 2147-0294 e-ISSN 2528-9691 Trakya University Journal of Natural Sciences Volume: 20 Number: 1 April 2019 Trakya Univ J Nat Sci http://dergipark.gov.tr/trkjnat e-mail: [email protected] ISSN 2147-0294 e-ISSN 2528-9691 ISSN 2147-0294 e-ISSN 2528-9691 Trakya University Journal of Natural Sciences http://dergipark.gov.tr/trkjnat Volume 20, Number 1, April 2019 Owner On behalf of Trakya University Rectorship, Graduate School of Natural and Applied Sciences Prof. Dr. Murat YURTCAN Editor-in-Chief Doç. Dr. Kadri KIRAN Editorial Board Abdel Hameed A. AWAD National Research Center, Dokki Giza Egypt Albena LAPEVA-GJONOVA Sofia University, Sofia Bulgaria Ayşegül ÇERKEZKAYABEKİR Trakya University, Edirne Turkey (Copyeditor) Bálint MARKÓ Babeș-Bolyai University Romania Beata ZIMOWSKA University of Life Sciences, Lublin Poland Belgin SÜSLEYİCİ Marmara University, İstanbul Turkey Burak ÖTERLER Trakya University, Edirne Turkey (Design Editor) Bülent YORULMAZ Muğla Sıtkı Koçman University, Muğla Turkey Celal KARAMAN Trakya University, Edirne Turkey (Copyeditor) Cem Vural Erciyes University, Kayseri Turkey Coşkun TEZ Erciyes University, Kayseri Turkey Errol HASSAN University of Queensland, Brisbane Australia Gamze ALTINTAŞ KAZAR Trakya University, Edirne Turkey (Design Editor) Gökhan Barış ÖZDENER Boston University, Boston United States Herdem ASLAN Çanakkale Onsekiz Mart University, Çanakkale Turkey -
Pindara Revisited – Evolution and Generic Limits in Helvellaceae
Persoonia 42, 2019: 186–204 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2019.42.07 Pindara revisited – evolution and generic limits in Helvellaceae K. Hansen1, T. Schumacher2, I. Skrede2, S. Huhtinen3, X.-H. Wang1,4 Key words Abstract The Helvellaceae encompasses taxa that produce some of the most elaborate apothecial forms, as well as hypogeous ascomata, in the class Pezizomycetes (Ascomycota). While the circumscription of the Helvella ascus croziers ceae is clarified, evolutionary relationships and generic limits within the family are debatable. A robust phylogeny Balsamia of the Helvellaceae, using an increased number of molecular characters from the LSU rDNA, RPB2 and EF-1α Barssia gene regions (4 299 bp) and a wide representative sampling, is presented here. Helvella s.lat. was shown to be Helvella aestivalis polyphyletic, because Helvella aestivalis formed a distant monophyletic group with hypogeous species of Balsamia Midotis and Barssia. All other species of Helvella formed a large group with the enigmatic Pindara (/Helvella) terrestris Pezizomycetes nested within it. The ear-shaped Wynnella constitutes an independent lineage and is recognised with the earlier name Midotis. The clade of the hypogeous Balsamia and Barssia, and H. aestivalis is coherent in the three-gene phylogeny, and considering the lack of phenotypic characters to distinguish Barssia from Balsamia we combine species of Barssia, along with H. aestivalis, in Balsamia. The closed/tuberiform, sparassoid H. astieri is shown to be a synonym of H. lactea; it is merely an incidental folded form of the saddle-shaped H. lactea. Pindara is a sister group to a restricted Helvella, i.e., excluding the /leucomelaena lineage, on a notably long branch. -
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes 1 DONALD H. PFISTER CONTENTS 5. Discinaceae . 47 6. Glaziellaceae. 47 I. Introduction ................................ 35 7. Helvellaceae . 47 II. Orbiliomycetes: An Overview.............. 37 8. Karstenellaceae. 47 III. Occurrence and Distribution .............. 37 9. Morchellaceae . 47 A. Species Trapping Nematodes 10. Pezizaceae . 48 and Other Invertebrates................. 38 11. Pyronemataceae. 48 B. Saprobic Species . ................. 38 12. Rhizinaceae . 49 IV. Morphological Features .................... 38 13. Sarcoscyphaceae . 49 A. Ascomata . ........................... 38 14. Sarcosomataceae. 49 B. Asci. ..................................... 39 15. Tuberaceae . 49 C. Ascospores . ........................... 39 XIII. Growth in Culture .......................... 50 D. Paraphyses. ........................... 39 XIV. Conclusion .................................. 50 E. Septal Structures . ................. 40 References. ............................. 50 F. Nuclear Division . ................. 40 G. Anamorphic States . ................. 40 V. Reproduction ............................... 41 VI. History of Classification and Current I. Introduction Hypotheses.................................. 41 VII. Growth in Culture .......................... 41 VIII. Pezizomycetes: An Overview............... 41 Members of two classes, Orbiliomycetes and IX. Occurrence and Distribution .............. 41 Pezizomycetes, of Pezizomycotina are consis- A. Parasitic Species . ................. 42 tently shown -
Duke University Dissertation Template
Systematics, Phylogeography and Ecology of Elaphomycetaceae by Hannah Theresa Reynolds Department of Biology Duke University Date:_______________________ Approved: ___________________________ Rytas Vilgalys, Supervisor ___________________________ Marc Cubeta ___________________________ Katia Koelle ___________________________ François Lutzoni ___________________________ Paul Manos Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biology in the Graduate School of Duke University 2011 iv ABSTRACTU Systematics, Phylogeography and Ecology of Elaphomycetaceae by Hannah Theresa Reynolds Department of Biology Duke University Date:_______________________ Approved: ___________________________ Rytas Vilgalys, Supervisor ___________________________ Marc Cubeta ___________________________ Katia Koelle ___________________________ François Lutzoni ___________________________ Paul Manos An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biology in the Graduate School of Duke University 2011 Copyright by Hannah Theresa Reynolds 2011 Abstract This dissertation is an investigation of the systematics, phylogeography, and ecology of a globally distributed fungal family, the Elaphomycetaceae. In Chapter 1, we assess the literature on fungal phylogeography, reviewing large-scale phylogenetics studies and performing a meta-data analysis of fungal population genetics. In particular, we examined -
Truffle Trouble: What Happened to the Tuberales?
mycological research 111 (2007) 1075–1099 journal homepage: www.elsevier.com/locate/mycres Truffle trouble: what happened to the Tuberales? Thomas LÆSSØEa,*, Karen HANSENb,y aDepartment of Biology, Copenhagen University, DK-1353 Copenhagen K, Denmark bHarvard University Herbaria – Farlow Herbarium of Cryptogamic Botany, Cambridge, MA 02138, USA article info abstract Article history: An overview of truffles (now considered to belong in the Pezizales, but formerly treated in Received 10 February 2006 the Tuberales) is presented, including a discussion on morphological and biological traits Received in revised form characterizing this form group. Accepted genera are listed and discussed according to a sys- 27 April 2007 tem based on molecular results combined with morphological characters. Phylogenetic Accepted 9 August 2007 analyses of LSU rDNA sequences from 55 hypogeous and 139 epigeous taxa of Pezizales Published online 25 August 2007 were performed to examine their relationships. Parsimony, ML, and Bayesian analyses of Corresponding Editor: Scott LaGreca these sequences indicate that the truffles studied represent at least 15 independent line- ages within the Pezizales. Sequences from hypogeous representatives referred to the fol- Keywords: lowing families and genera were analysed: Discinaceae–Morchellaceae (Fischerula, Hydnotrya, Ascomycota Leucangium), Helvellaceae (Balsamia and Barssia), Pezizaceae (Amylascus, Cazia, Eremiomyces, Helvellaceae Hydnotryopsis, Kaliharituber, Mattirolomyces, Pachyphloeus, Peziza, Ruhlandiella, Stephensia, Hypogeous Terfezia, and Tirmania), Pyronemataceae (Genea, Geopora, Paurocotylis, and Stephensia) and Pezizaceae Tuberaceae (Choiromyces, Dingleya, Labyrinthomyces, Reddellomyces, and Tuber). The different Pezizales types of hypogeous ascomata were found within most major evolutionary lines often nest- Pyronemataceae ing close to apothecial species. Although the Pezizaceae traditionally have been defined mainly on the presence of amyloid reactions of the ascus wall several truffles appear to have lost this character. -
Ulukiġla (Nġğde) Yöresġnde Yetġġen Makromantarlarin Belġrlenmesġ
ULUKIġLA (NĠĞDE) YÖRESĠNDE YETĠġEN MAKROMANTARLARIN BELĠRLENMESĠ Osman BERBER Yüksek Lisans Tezi Biyoloji Anabilim Dalı Prof. Dr. Abdullah KAYA Haziran-2019 T.C KARAMANOĞLU MEHMETBEY ÜNĠVERSĠTESĠ FEN BĠLĠMLERĠ ENSTĠTÜSÜ ULUKIġLA (NĠĞDE) YÖRESĠNDE YETĠġEN MAKROMANTARLARIN BELĠRLENMESĠ YÜKSEK LĠSANS TEZĠ Osman BERBER Anabilim Dalı: Biyoloji Tez DanıĢmanı: Prof. Dr. Abdullah KAYA KARAMAN-2019 TEZ BĠLDĠRĠMĠ Yazım kurallarına uygun olarak hazırlanan bu tezin yazılmasında bilimsel ahlak kurallarına uyulduğunu, başkalarının eserlerinden yararlanılması durumunda bilimsel normlara uygun olarak atıfta bulunulduğunu, tezin içerdiği yenilik ve sonuçların başka bir yerden alınmadığını, kullanılan verilerde herhangi bir tahrifat yapılmadığını, tezin herhangi bir kısmının bu üniversite veya başka bir üniversitedeki başka bir tez çalışması olarak sunulmadığını beyan ederim. OsmanBERBER ÖZET Yüksek Lisans Tezi ULUKIġLA (NĠĞDE) YÖRESĠNDE YETĠġEN MAKROMANTARLARIN BELĠRLENMESĠ Osman BERBER Karamanoğlu Mehmetbey Üniversitesi Fen Bilimleri Enstitüsü Biyoloji Anabilim Dalı DanıĢman: Prof. Dr. Abdullah KAYA Haziran, 2019, 121 sayfa Bu çalışma Ulukışla (Niğde) yöresinde yetişen makromantarlar üzerinde gerçekleştirilmiştir. 2017-2019 yılları arasında periyodik olarak bölgede gerçekleştirilen arazi çalışmaları sonucunda 356 makromantar örneği toplanmıştır. Laboratuvar ortamına getirilen örnekler kurutularak fungaryum materyali haline getirilmiş, gerekli teşhis işlemleri sonucunda 6 sınıf, 13 takım, 38 familya ve 62 cinse ait 79 tür tanımlanmıştır. Belirlenen türlerden -
Balsamia (Sequestrate Helvellaceae, Ascomycota) in Western North America
VOLUME 2 DECEMBER 2018 Fungal Systematics and Evolution PAGES 11–36 doi.org/10.3114/fuse.2018.02.02 Balsamia (Sequestrate Helvellaceae, Ascomycota) in western North America D. Southworth1*, J.L. Frank1, M.A. Castellano2, M.E. Smith3, J.M. Trappe4 1Department of Biology, Southern Oregon University, Ashland, OR 97520, USA 2USDA Forest Service, Northern Research Station, Forestry Sciences Laboratory, Corvallis, OR 97331, USA 3Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA 4Department of Forest Ecosystems and Society, Oregon State University, and USDA Forest Service, Pacific Northwest Research Station, Forestry Sciences Laboratory, Corvallis, OR 97331, USA *Corresponding author: [email protected] Key words: Abstract: Balsamia, a hypogeous, sequestrate genus in the Helvellaceae, has been characterized variously as having three hypogeous fungi to eight species in North America, and these have been considered either different from or conspecific with European Pezizomycotina species. No available modern systematic treatment of Balsamia exists to allow for accurate identification at the species Pseudobalsamia level. We sequenced DNA from recent western North American Balsamia collections, assessed relationships by sequence sequestrate fungi similarity, and identified molecular taxonomic units. From these data, we determined which matched descriptions and truffles types of named species. ITS sequences supported 12 Balsamia species in western North America, five originally described by Harkness and Fischer and seven new species that we describe here. No sequences from Balsamia collections in western North America were nested among those of European species. We found no clear evidence for separation ofBalsamia into multiple genera. Published online: 6 June 2018. Editor-in-Chief Prof. dr P.W.