Algal Bloom and Its Economic Impact
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Development of a Quantitative PCR Assay for the Detection And
bioRxiv preprint doi: https://doi.org/10.1101/544247; this version posted February 8, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Development of a quantitative PCR assay for the detection and enumeration of a potentially ciguatoxin-producing dinoflagellate, Gambierdiscus lapillus (Gonyaulacales, Dinophyceae). Key words:Ciguatera fish poisoning, Gambierdiscus lapillus, Quantitative PCR assay, Great Barrier Reef Kretzschmar, A.L.1,2, Verma, A.1, Kohli, G.S.1,3, Murray, S.A.1 1Climate Change Cluster (C3), University of Technology Sydney, Ultimo, 2007 NSW, Australia 2ithree institute (i3), University of Technology Sydney, Ultimo, 2007 NSW, Australia, [email protected] 3Alfred Wegener-Institut Helmholtz-Zentrum fr Polar- und Meeresforschung, Am Handelshafen 12, 27570, Bremerhaven, Germany Abstract Ciguatera fish poisoning is an illness contracted through the ingestion of seafood containing ciguatoxins. It is prevalent in tropical regions worldwide, including in Australia. Ciguatoxins are produced by some species of Gambierdiscus. Therefore, screening of Gambierdiscus species identification through quantitative PCR (qPCR), along with the determination of species toxicity, can be useful in monitoring potential ciguatera risk in these regions. In Australia, the identity, distribution and abundance of ciguatoxin producing Gambierdiscus spp. is largely unknown. In this study we developed a rapid qPCR assay to quantify the presence and abundance of Gambierdiscus lapillus, a likely ciguatoxic species. We assessed the specificity and efficiency of the qPCR assay. The assay was tested on 25 environmental samples from the Heron Island reef in the southern Great Barrier Reef, a ciguatera endemic region, in triplicate to determine the presence and patchiness of these species across samples from Chnoospora sp., Padina sp. -
Save the Reef
Save the Reef A member group of Lock the Gate Alliance www.savethereef.net.au Committee Secretary Senate Standing Committees on Environment and Communications PO Box 6100 Parliament House Canberra ACT 2600 Phone: +61 2 6277 3526 Fax: +61 2 6277 5818 [email protected] Submission to the Senate Inquiry on The adequacy of the Australian and Queensland Governments’ efforts to stop the rapid decline of the Great Barrier Reef, including but not limited to: Points a–k. Save the Reef would like to thank this committee for the opportunity to make a submission and would also like to speak further if there is an opportunity at any public hearings. The Great Barrier Reef is Australia’s greatest natural asset. It is a tourism mecca, a 6 billion dollar economic boon as well as a scientific wonderland. It is a World Heritage Listed property and an acknowledged world wonder. The Great Barrier Reef is part of Australia’s very identity. We are failing to protect the Great Barrier Reef. The efforts to stop the rapid decline of the Great Barrier Reef are grossly inadequate. It demonstrates that our current system for protecting the environment is broken. Environmental impact statements, conditions, offsets, regulations, enforcement and even the EPBC act, processes meant to protect the environment are being subverted and the impact is apparent. The holes in the “Swiss Cheese” are lining up and have allowed and are continuing to allow further destruction of the Great Barrier Reef when it needs our protection the most. The recent developments in Gladstone are a clear demonstration of the failure of our systems. -
Sample Chapter Algal Blooms
ALGAL BLOOMS 7 Observations and Remote Sensing. http://dx.doi.org/10.1109/ energy and material transport through the food web, and JSTARS.2013.2265255. they also play an important role in the vertical flux of Pack, R. T., Brooks, V., Young, J., Vilaca, N., Vatslid, S., Rindle, P., material out of the surface waters. These blooms are Kurz, S., Parrish, C. E., Craig, R., and Smith, P. W., 2012. An “ ” overview of ALS technology. In Renslow, M. S. (ed.), Manual distinguished from those that are deemed harmful. of Airborne Topographic Lidar. Bethesda: ASPRS Press. Algae form harmful algal blooms, or HABs, when either Sithole, G., and Vosselman, G., 2004. Experimental comparison of they accumulate in massive amounts that alone cause filter algorithms for bare-Earth extraction from airborne laser harm to the ecosystem or the composition of the algal scanning point clouds. ISPRS Journal of Photogrammetry and community shifts to species that make compounds Remote Sensing, 59,85–101. (including toxins) that disrupt the normal food web or to Shan, J., and Toth, C., 2009. Topographic Laser Ranging and Scanning: Principles and Processes. Boca Raton: CRC Press. species that can harm human consumers (Glibert and Slatton, K. C., Carter, W. E., Shrestha, R. L., and Dietrich, W., 2007. Pitcher, 2001). HABs are a broad and pervasive problem, Airborne laser swath mapping: achieving the resolution and affecting estuaries, coasts, and freshwaters throughout the accuracy required for geosurficial research. Geophysical world, with effects on ecosystems and human health, and Research Letters, 34,1–5. on economies, when these events occur. This entry Wehr, A., and Lohr, U., 1999. -
Harmful Algal Bloom Response Program
What are HABs? • Blue-green algae are bacteria that grow in water, contain chlorophyll, and can photosynthesize. They are not a new occurrence. WHEN IN DOUBT, STAY OUT! Kansas Department of Health • When these bacteria reproduce rapidly, For additional information: and Environment it can create a Harmful Algal Bloom (HAB). Please visit • HABs can sometimes produce toxins www.kdheks.gov/algae-illness. Harmful that affect people, pets, livestock, and Or call the KDHE HAB Hotline at wildlife. The toxins can affect the skin, 785-296-1664. liver, and nervous system. Algal Bloom • People and animals may be exposed to toxins via ingestion, skin contact, or Response inhalation of contaminated water. Program • The most common human health effects from HABs can include vomiting, diarrhea, skin rashes, eye irritation, and respiratory symptoms. • Boiling water does not remove or Department of Health inactivate toxins from blue-green algae, and Environment and there is no known antidote. • Animal deaths due to HAB toxins have Department of Health been documented, so: and Environment When in doubt, stay out! To protect and improve the health and environment of all Kansans. How else is KDHE working to What causes HABs? HAB Advisory Levels prevent HABs? Blue-green algae are a natural part of water- Threshold Levels based ecosystems. They become a problem Harmful Algal Blooms thrive in the presence when nutrients (phosphorus and nitrogen) are Watch Warning Closure of excess nutrients such as nitrogen and present in concentrations above what would phosphorus. Thus, KDHE continually works to occur naturally. Under these conditions, algae blue green reduce nutrient input and improve overall can grow very quickly to extreme numbers, cell counts 80,000 250,000 10,000,000 water quality through a series of interrelated resulting in a Harmful Algal Bloom. -
Harmful Algal Bloom Online Resources
Harmful Algal Bloom Online Resources General Information • CDC Harmful Algal Bloom-Associated Illnesses Website • CDC Harmful Algal Blooms Feature • EPA CyanoHABs Website • EPA Harmful Algal Blooms & Cyanobacteria Research Website • NOAA Harmful Algal Bloom Website • NOAA Harmful Algal Bloom and Hypoxia Research Control Act Harmful Algal Bloom Monitoring and Tracking • EPA Cyanobacteria Assessment Network (CyAN) Project • NCCOS Harmful Algal Bloom Research Website • NOAA Harmful Algal Bloom Forecasts • USGS Summary of Cyanobacteria Monitoring and Assessments in USGS Water Science Centers • WHO Toxic Cyanobacteria in water: A guide to their public health consequences, monitoring, and management Harmful Algal Blooms and Drinking Water • AWWA Assessment of Blue-Green Algal Toxins in Raw and Finished Drinking Water • EPA Guidelines and Recommendations • EPA Harmful Algal Bloom & Drinking Water Treatment Website • EPA Algal Toxin Risk Assessment and Management Strategic Plan for Drinking Water Document • USGS Drinking Water Exposure to Chemical and Pathogenic Contaminants: Algal Toxins and Water Quality Website Open Water Resources • CDC Healthy Swimming Website - Oceans, Lakes, Rivers • EPA State Resources Website • EPA Beach Act Website • EPA Beach Advisory and Closing On-line Notification (BEACON) • USG Guidelines for Design and Sampling for Cyanobacterial Toxin and Taste-and-Odor Studies in Lakes and Reservoirs • NALMS Inland HAB Program • NOAA Illinois-Indiana and Michigan Sea Grant Beach Manager’s Manual • USGS Field and Laboratory Guide -
Environmental Quality Standards for Barium in Surface Water Proposal for an Update According to the Methodology of the Water Framework Directive
Environmental quality standards for barium in surface water Proposal for an update according to the methodology of the Water Framework Directive This report contains an erratum d.d. 29-01-2021 on page 111 RIVM letter report 2020-0024 E.M.J. Verbruggen | C.E. Smit | P.L.A. van Vlaardingen Environmental quality standards for barium in surface water Proposal for an update according to the methodology of the Water Framework Directive This report contains an erratum d.d. 29-01-2021 on page 111 RIVM letter report 2020-0024 E.M.J. Verbruggen | C.E. Smit | P.L.A. van Vlaardingen RIVM letter report 2020-0024 Colophon © RIVM 2020 Parts of this publication may be reproduced, provided acknowledgement is given to: National Institute for Public Health and the Environment, along with the title and year of publication. DOI 10.21945/RIVM-2020-0024 E.M.J. Verbruggen (author), RIVM C.E. Smit (author), RIVM P.L.A. van Vlaardingen. (author), RIVM Contact: Els Smit Centre for Safety of Substances and Products [email protected] This investigation has been performed by order and for the account of Ministry of Infrastructure and Water Management, within the framework of the project ‘Chemical substances, standard setting and Priority Substances Directive’. Published by: National Institute for Public Health and the Environment, RIVM P.O. Box1 | 3720 BA Bilthoven The Netherlands www.rivm.nl/en Page 2 of 111 RIVM letter report 2020-0024 Synopsis Environmental quality standards for barium in surface water Proposal for an update according to the methodology of the Water Framework Directive RIVM is proposing new water quality standards for barium in surface water. -
Habs in UPWELLING SYSTEMS
GEOHAB CORE RESEARCH PROJECT: HABs IN UPWELLING SYSTEMS 1 GEOHAB GLOBAL ECOLOGY AND OCEANOGRAPHY OF HARMFUL ALGAL BLOOMS GEOHAB CORE RESEARCH PROJECT: HABS IN UPWELLING SYSTEMS AN INTERNATIONAL PROGRAMME SPONSORED BY THE SCIENTIFIC COMMITTEE ON OCEANIC RESEARCH (SCOR) AND THE INTERGOVERNMENTAL OCEANOGRAPHIC COMMISSION (IOC) OF UNESCO EDITED BY: G. PITCHER, T. MOITA, V. TRAINER, R. KUDELA, P. FIGUEIRAS, T. PROBYN BASED ON CONTRIBUTIONS BY PARTICIPANTS OF THE GEOHAB OPEN SCIENCE MEETING ON HABS IN UPWELLING SYSTEMS AND THE GEOHAB SCIENTIFIC STEERING COMMITTEE February 2005 3 This report may be cited as: GEOHAB 2005. Global Ecology and Oceanography of Harmful Algal Blooms, GEOHAB Core Research Project: HABs in Upwelling Systems. G. Pitcher, T. Moita, V. Trainer, R. Kudela, P. Figueiras, T. Probyn (Eds.) IOC and SCOR, Paris and Baltimore. 82 pp. This document is GEOHAB Report #3. Copies may be obtained from: Edward R. Urban, Jr. Henrik Enevoldsen Executive Director, SCOR Programme Co-ordinator Department of Earth and Planetary Sciences IOC Science and Communication Centre on The Johns Hopkins University Harmful Algae Baltimore, MD 21218 U.S.A. Botanical Institute, University of Copenhagen Tel: +1-410-516-4070 Øster Farimagsgade 2D Fax: +1-410-516-4019 DK-1353 Copenhagen K, Denmark E-mail: [email protected] Tel: +45 33 13 44 46 Fax: +45 33 13 44 47 E-mail: [email protected] This report is also available on the web at: http://www.jhu.edu/scor/ http://ioc.unesco.org/hab ISSN 1538-182X Cover photos courtesy of: Vera Trainer Teresa Moita Grant Pitcher Copyright © 2005 IOC and SCOR. -
Harmful Algal Blooms (Habs) and Desalination: a Guide to Impacts, Monitoring, and Management
Manuals and Guides 78 Harmful Algal Blooms (HABs) and Desalination: A Guide to Impacts, Monitoring, and Management Edited by: Donald M. Anderson, Siobhan F.E. Boerlage, Mike B. Dixon UNESCO Manuals and Guides 78 Intergovernmental Oceanographic Commission Harmful Algal Blooms (HABs) and Desalination: A Guide to Impacts, Monitoring and Management Edited by: Donald M. Anderson* Biology Department, Woods Hole Oceanographic Institution Woods Hole, MA 02543 USA Siobhan F. E. Boerlage Boerlage Consulting Gold Coast, Queensland, Australia Mike B. Dixon MDD Consulting, Kensington Calgary, Alberta, Canada *Corresponding Author’s email: [email protected] UNESCO 2017 Bloom prevention and control 7 BLOOM PREVENTION AND CONTROL Clarissa R. Anderson1, Kevin G. Sellner2, and Donald M. Anderson3 1University of California, Santa Cruz, Santa Cruz, CA USA 2Chesapeake Research Consortium, Edgewater MD USA 3Woods Hole Oceanographic Institution, Woods Hole MA USA 7.1 Introduction ........................................................................................................................................... 205 7.2 Bloom prevention .................................................................................................................................. 207 7.2.1 Nutrient load reduction .................................................................................................................. 207 7.2.2 Nutrient load ................................................................................................................................. -
Harmful Algal Blooms
NSF GK-12 Graduate Fellows Program Award # DGE-0139171 University of North Carolina at Wilmington Harmful Algal Blooms by Tika Knierim, Department of Chemistry This activity is aligned with the 2001 North Carolina Standard Course of Study for 8th Grade Science: Goal # 1 & 2 Algal species sometimes make their presence known as a massive “bloom” of cells that may discolor the water These “blooms” alter marine habitats Every coastal state has reported major blooms Although they are referred to as harmful algal blooms, not all HABs are toxic Toxic blooms are caused by algae that produce potent toxins that can cause massive fish kills, marine mammal deaths, and human illness There are several types of toxins produced by these harmful algae. .commonly the toxins affect the functioning of nerve and muscle cells Toxic blooms have been responsible for causing diarrhea, vomiting, numbness, dizziness, paralysis, and even death The key is how the toxins move through the food web The key to this scenario is bioaccumulation!! BIOACCUMULATION is the process by which compounds accumulate or build up in an organism at a faster rate than they can be broken down. Some organisms, such as krill, mussels, anchovies, and mackerel, have been found to retain toxins in their bodies Today we are going to do a little activity in order to better understand the concept of bioaccumulation and how toxins are transferred through the food chain. Each person will be assigned one of the following organisms: Krill: Seal: Fish: Killer Whale: There is an outbreak of a Harmful Algal Bloom within the boundaries of this classroom, and there is algae (green beads) spread all over the area. -
HARMFUL ALGAL BLOOMS in COASTAL WATERS: Options for Prevention, Control and Mitigation
Science for Solutions A A Special Joint Report with the Decision Analysis Series No. 10 National Fish and Wildlife Foundation onald F. Boesch, Anderson, Rita A dra %: Shumway, . Tesf er, Terry E. February 1997 U.S. DEPARTMENT OF COMMERCE U.S. DEPARTMENT OF THE INTERIOR William M. Daley, Secretary Bruce Babbitt, Secretary The Decision Analysis Series has been established by NOAA's Coastal Ocean Program (COP) to present documents for coastal resource decision makers which contain analytical treatments of major issues or topics. The issues, topics, and principal investigators have been selected through an extensive peer review process. To learn more about the COP or the Decision Analysis Series, please write: NOAA Coastal Ocean Office 1315 East West Highway Silver Spring, MD 209 10 phone: 301-71 3-3338 fax: 30 1-7 13-4044 Cover photo: The upper portion of photo depicts a brown tide event in an inlet along the eastern end of Long Island, New York, during Summer 7986. The blue water is Block lsland Sound. Photo courtesy of L. Cosper. Science for Solutions NOAA COASTAL OCEAN PROGRAM Special Joint Report with the Decision Analysis Series No. 10 National Fish and WildlifeFoundation HARMFUL ALGAL BLOOMS IN COASTAL WATERS: Options for Prevention, Control and Mitigation Donald F. Boesch, Donald M. Anderson, Rita A. Horner Sandra E. Shumway, Patricia A. Tester, Terry E. Whitledge February 1997 National Oceanic and Atmospheric Administration National Fish and Wildlife Foundation D. James Baker, Under Secretary Amos S. Eno, Executive Director Coastal Ocean Office Donald Scavia, Director This ~ublicationshould be cited as: Boesch, Donald F. -
Estuarine Response to Nutrient Enrichment, a Counterpart of Eutrophication
ESTUARINE RESPONSE TO NUTRIENT ENRICHMENT, A COUNTERPART OF EUTROPHICATION: AN ANNOTATED BIBLIOGRAPHY K. L. WEBB D. M. HAYWARD J. M. BAKER B. MURRAY VIRGINIA INSTITUTE OF MARINE SCIENCE AND SCHOOL OF MARINE SCIENCE COLLEGE OF WILLIAM AND MARY GLOUCESTER POINT, VA 23062 THIS RESEARCH WAS SUPPORTED BY GRANT NUMBER: R 806 189 010 FROM THE US ENVIRONMENTAL PROTECTION AGENCY TO THE CHESAPEAKE RESEARCH CONSORTIUM, INC. 1419 FOREST DRIVE, SUITE 207 ANNAPOLIS, MD 21403 MAY 1979 CRC PUBLICATION NUMBER: 67 SPECIAL SCIENTIFIC REPORT NUMBER: 94 VIRGINIA INSTITUTE OF MARINE SCIENCE PREFACE This work is a result of our efforts to compile the literature related to the results of nutrient enrichment of estuaries. It consists of two related publications, a bibliography and an annotated bibliography; both works are accompanied by an index which applies to either bibliography. An attempt has been made to include some key papers related to various processes, eg. nutrient uptake by phytoplankton, which influence or participate in the response process. Items included are wide ranging from articles in scientific journals, chapters in books, and manuscripts for such publications to the grey literature of project reports, theses and the like. They have been accumulated by a variety of methods including the use of the DIALOG Information Retrieval Service (Lockheed Information Systems), manual search of various abstracting publications and the original contemporary literature as well as direct input from authors responding to direct and indirect solicitation. Science Citation Index (Institute of Scientific Information) was also utilized as a source. Annotations rely heavily on abstracts from authors or abstracting services. Copies of all the original documents are being acquired and will be available for personal use at the CRC headquarters and the four Consortium member institutions. -
Dry Weight and Cell Density of Individual Algal and Cyanobacterial Cells for Algae
Dry Weight and Cell Density of Individual Algal and Cyanobacterial Cells for Algae Research and Development _______________________________________ A Thesis presented to the Faculty of the Graduate School at the University of Missouri-Columbia _______________________________________________________ In Partial Fulfillment of the Requirements for the Degree Master of Science _____________________________________________________ by WENNA HU Dr. Zhiqiang Hu, Thesis Supervisor July 2014 The undersigned, appointed by the Dean of the Graduate School, have examined the thesis entitled Dry Weight and Cell Density of Individual Algal and Cyanobacterial Cells for Algae Research and Development presented by Wenna Hu, a candidate for the degree of Master of Science, and hereby certify that, in their opinion, it is worthy of acceptance. Professor Zhiqiang Hu Professor Enos C. Inniss Professor Pamela Brown DEDICATION I dedicate this thesis to my beloved parents, whose moral encouragement and support help me earn my Master’s degree. Acknowledgements Foremost, I would like to express my sincere gratitude to my advisor and mentor Dr. Zhiqiang Hu for the continuous support of my graduate studies, for his patience, motivation, enthusiasm, and immense knowledge. His guidance helped me in all the time of research and writing of this thesis. Without his guidance and persistent help this thesis would not have been possible. I would like to thank my committee members, Dr. Enos Inniss and Dr. Pamela Brown for being my graduation thesis committee. Their guidance and enthusiasm of my graduate research is greatly appreciated. Thanks to Daniel Jackson in immunology core for the flow cytometer operation training, and Arpine Mikayelyan in life science center for fluorescent images acquisition.